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As filed with the Securities and Exchange Commission on May 10, 2004.
Registration No. 333-113162


UNITED STATES SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549


AMENDMENT NO. 3

TO
Form S-1
REGISTRATION STATEMENT UNDER
THE SECURITIES ACT OF 1933
Alnylam Pharmaceuticals, Inc.
(Exact name of registrant as specified in its charter)


         
Delaware   2834   77-0602661
(State or other jurisdiction of
incorporation or organization)
  (Primary Standard Industrial
Classification Code Number)
  (I.R.S. Employer
Identification Number)

300 Third Street

Cambridge, Massachusetts 02142
(617) 551-8200
(Address Including Zip Code, and Telephone Number, Including Area Code, of Registrant’s Principal Executive Offices)


John M. Maraganore, Ph.D.

President and Chief Executive Officer
Alnylam Pharmaceuticals, Inc.
300 Third Street
Cambridge, Massachusetts 02142
(617) 551-8200
(Name, Address Including Zip Code and Telephone Number, Including Area Code, of Agent for Service)


Copies to:

     
Steven D. Singer, Esq.
Peter N. Handrinos, Esq.
Hale and Dorr LLP
60 State Street
Boston, Massachusetts 02109
(617) 526-6000
  Danielle Carbone, Esq.
Shearman & Sterling LLP
599 Lexington Avenue
New York, New York 10022
(212) 848-4000

     Approximate date of commencement of proposed sale to the public: As soon as practicable after the effective date hereof.

     If any of the securities being registered on this Form are to be offered on a delayed or continuous basis pursuant to Rule 415 under the Securities Act, check the following box.     o

     If this Form is filed to register additional securities for an offering pursuant to Rule 462(b) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o  


     If this Form is a post-effective amendment filed pursuant to Rule 462(c) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o  


     If this Form is a post-effective amendment filed pursuant to Rule 462(d) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o  


     If delivery of the Prospectus is expected to be made pursuant to Rule 434, please check the following box.     o  



CALCULATION OF REGISTRATION FEE

                 


Proposed Maximum Proposed Maximum Amount of
Title of Each Class of Amount to Aggregate Offering Aggregate Offering Registration
Securities to be Registered be Registered(1) Price Per Share(2) Price(2) Fee(3)(4)

Common Stock, $0.0001 par value per share
  5,750,000   $12.00   $69,000,000   $8,743


(1)  Includes 750,000 shares of common stock that may be purchased by the underwriters to cover over-allotments, if any.
 
(2)  Estimated solely for the purpose of calculating the registration fee pursuant to Rule 457(a) under the Securities Act of 1933, as amended.
 
(3)  Calculated pursuant to Rule 457(a) based on an estimate of the proposed maximum aggregate offering price.
 
(4)  A registration fee of $10,928 has been paid previously in connection with this Registration Statement based on an estimate of the aggregate offering price.


     The Registrant hereby amends this Registration Statement on such date or dates as may be necessary to delay its effective date until the Registrant shall file a further amendment which specifically states that this Registration Statement shall thereafter become effective in accordance with Section 8(a) of the Securities Act of 1933 or until the Registration Statement shall become effective on such date as the Commission, acting pursuant to said Section 8(a), may determine.




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The information in this preliminary prospectus is not complete and may be changed. We may not sell these securities until the registration statement filed with the Securities and Exchange Commission is effective. This preliminary prospectus is not an offer to sell these securities and it is not soliciting an offer to buy these securities in any jurisdiction where the offer or sale is not permitted.

Preliminary Prospectus                SUBJECT TO COMPLETION, DATED MAY 10, 2004

5,000,000 Shares

(ALNYLAM LOGO)

Common Stock


        Alnylam Pharmaceuticals, Inc. is offering 5,000,000 shares of common stock. This is our initial public offering, and no public market currently exists for our shares. We anticipate that the initial public offering price will be between $10 and $12 per share. After the offering, the market price for our shares may be outside this range.


      We have applied to list our common stock on the NASDAQ National Market under the symbol “ALNY.”


      Investing in our common stock involves a high degree of risk. See “Risk Factors” beginning on page 11.

                 


Per Share Total

Offering price
  $       $    

Discounts and commissions to underwriters
  $       $    

Offering proceeds to Alnylam, before expenses
  $       $    


      Neither the Securities and Exchange Commission nor any state securities commission has approved or disapproved of these securities or determined if this prospectus is accurate or complete. Any representation to the contrary is a criminal offense.

      We have granted the underwriters the right to purchase up to 750,000 additional shares of common stock to cover any over-allotments. The underwriters can exercise this right at any time within 30 days after the offering. The underwriters expect to deliver the shares of common stock to investors on or about                     , 2004.

Banc of America Securities LLC


Citigroup
  Piper Jaffray
  ThinkEquity Partners

                  , 2004


     You should rely only on the information contained in this prospectus. We have not, and the underwriters have not, authorized anyone to provide you with different information. We are not making an offer to sell these securities in any jurisdiction where the offer or sale is not permitted. You should assume that the information contained in this prospectus is accurate as of the date on the front of this prospectus only. Our business, financial condition, results of operations and prospects may have changed since that date.

     Unless otherwise stated, all references to “Alnylam,” “we,” “us,” “our,” the “Company” and similar designations refer to Alnylam Pharmaceuticals, Inc. and its subsidiaries. Alnylam is a registered trademark, Direct RNAi, Systemic RNAi and Interfe Rx are trademarks, and Alnylam’s logo is a service mark, of Alnylam. Other trademarks and service marks appearing in this prospectus are the property of their respective holders.


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    F-1  
  EX-1.1 UNDERWRITING AGREEMENT
  EX-3.1 CERTIFICATE OF INCORPORATION
  EX-4.1 SPECIMEN CERTIFICATE
  EX-5.1 OPINION OF HALE & DORR LLP
  EX-10.1 2002 EMP, DIRECTOR & CONSULTANT STOCK PLAN
  EX-10.2 2003 EMP, DIRECTOR & CONSULTANT STOCK PLAN
  EX-10.3 2004 STOCK INCENTIVE PLAN
  EX-10.4 2004 EMPLOYEE STOCK PURCHASE PLAN
  EX-23.1 CONSENT OF PRICEWATERHOUSECOOPERSLLP
  EX-23.2 CONSENT OF PRICEWATERHOUSECOOPERS GERMANY


      We are offering our shares of common stock in those jurisdictions in the United States and Europe and elsewhere where it is lawful to make such offers. The distribution of this prospectus and the offering of such shares of common stock in some jurisdictions may be restricted by law. Persons who receive this prospectus should inform themselves about and observe any such restrictions. This prospectus does not constitute, and may not be used in connection with, an offer or solicitation by anyone in any jurisdiction in which such offer or solicitation is not authorized or in which the person making such offer or solicitation is not qualified to do so or to any person to whom it is unlawful to make such offer or solicitation.

      A person may only communicate or cause to be communicated an invitation or inducement to engage in investment activity, within the meaning of section 21 of the Financial Services and Markets Act 2000 (U.K.), or the FSMA, received by it in connection with the issue or sale of any of our common shares in circumstances in which section 21(1) of the FSMA does not apply to us.

      This communication is directed only at persons who (1) are outside the United Kingdom, (2) have professional experience in matters relating to investments or (3) are persons falling within article 49(2)(a) to (d) (high net worth companies, unincorporated associations etc.) of The Financial Services and Markets Act 2000 (Financial Promotion) Order 2001 (U.K.), all such persons together being referred to as relevant persons. This communication must not be acted on or relied on by persons who are not relevant persons. Any investment or investment activity to which this communication relates is available only to relevant persons and will be engaged in only with relevant persons.

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SUMMARY

      This summary highlights information contained elsewhere in this prospectus that we consider important. This summary does not contain all of the information you should consider before buying shares of our common stock. You should read the entire prospectus carefully, including the “Risk Factors” section and our consolidated financial statements and the related notes included in this prospectus, before making an investment in our common stock.

OUR BUSINESS

Overview

      Alnylam is a biopharmaceutical company seeking to develop and commercialize new drugs that work through a recently discovered system in cells known as RNA interference, or RNAi. We believe that drugs that work through RNA interference, or RNAi therapeutics, have the potential to become a major class of drugs, like small molecule, protein and antibody drugs. Using our intellectual property and the expertise we have built in RNAi, we are developing a set of biological and chemical methods and know how that we expect to apply in a systematic way to develop RNAi therapeutics for a variety of diseases. We refer to these methods and their systematic application as our “product engine”. Using our current capabilities, we have initiated programs to develop RNAi therapeutics that will be administered directly to diseased parts of the body, which we refer to as Direct RNAi therapeutics. We believe there are multiple opportunities for Direct RNAi therapeutics. Our current Direct RNAi programs are focused on an eye disease known as age-related macular degeneration, or AMD, and on a central nervous system disorder known as Parkinson’s disease, or PD. We expect to initiate a clinical trial for our lead AMD product candidate in 2005. We are also working to extend our capabilities to enable the development of RNAi therapeutics that travel through the blood stream to reach diseased parts of the body, which we refer to as Systemic RNAi therapeutics. We believe Systemic RNAi will be used to treat a broad range of diseases.

      RNAi is a recently discovered natural mechanism for selectively silencing genes. Genes provide cells with coded instructions for making proteins, and silencing a gene refers to stopping or reducing production of the protein specified, or encoded, by that gene. Our goal is to develop new drugs that use the RNAi mechanism to selectively silence genes encoding proteins that play harmful roles in disease. We intend to develop drugs based on a type of molecule known as small interfering RNA, or siRNA. siRNAs are the molecules within cells that directly trigger RNAi. We expect that our RNAi therapeutics will consist of chemically modified siRNAs designed to silence specific genes. Given the recent availability of the base sequence of the entire human genome, RNAi therapeutics can be designed, in theory, to silence any gene that encodes a protein involved in disease, even if currently this protein cannot be adequately controlled by conventional drugs.

      The scientific evidence to support the feasibility of developing drugs based on RNAi technology is both preliminary and limited. siRNAs do not naturally possess many of the properties required of drugs, such as the ability to survive in the blood stream and penetrate into diseased tissues. The methods we are developing for our product engine need to introduce these drug-like properties into siRNAs without making these siRNAs unsafe or ineffective. We do not currently know whether we will be successful in developing these methods. Very few drug candidates based on RNAi technology have been tested in animals, and none has been tested in humans.

      We believe that we have a strong intellectual property position relating to the development and commercialization of siRNAs as therapeutics, consisting of:

  •  a concentration of intellectual property rights claiming fundamental features of siRNAs and their use as therapeutics, which includes our ownership of, or exclusive rights to, several issued patents and pending patent applications;
 
  •  a broad portfolio of intellectual property relating to chemical modifications of siRNAs, including over 150 patents licensed from Isis Pharmaceuticals, Inc.; and

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  •  a number of pending patent applications claiming siRNAs directed to specific targets as treatments for particular diseases.

We have filed or licensed over 200 patents and patent applications in the RNAi field. Nevertheless, we may need to acquire additional intellectual property rights in order to develop our products. In addition, our intellectual property rights may not be sufficient to prevent other companies from developing products that compete with any products we may develop.

      Our goal is to develop and commercialize RNAi therapeutics. To access the substantial funding and expertise required to develop and commercialize RNAi therapeutics, we intend to form strategic collaborations with pharmaceutical companies. In the collaborations we form in the near term, we expect to take the lead role in discovery and early preclinical development of specific RNAi therapeutics, and to share responsibilities with our collaborators in later-stage development and commercialization of these RNAi therapeutics. We expect that our collaborators will provide us with significant funding for the work we perform, access to their development and commercial capabilities, and a share of revenues from products we originate. Our first such alliance is with Merck & Co., Inc. Over time, as we expand our capabilities and resources, we expect the nature of the collaborations we form will evolve, so that we take on progressively more responsibility for development and commercialization of products we originate, and retain a greater share of the revenues these products generate. In the longer term, we expect to develop and commercialize RNAi therapeutics independently.

      Our ability to form appropriate collaborations with pharmaceutical companies will be crucial for our success. The development and commercialization of drugs often takes a decade or more to complete and requires significant expenditures. It is unlikely that we will be able to afford the time or expense involved in the development and commercialization of drugs unless we secure suitable collaborations with pharmaceutical companies. If we are unable to form or to maintain such collaborations, or our collaborators do not perform as we expect them to, we may not be able to develop and commercialize RNAi therapeutics. Moreover, the pharmaceutical marketplace is highly competitive, with hundreds of companies pursuing the same or very similar product opportunities. Even if we do succeed in developing RNAi therapeutics, we may not be able to compete effectively in the marketplace.

      Our scientific founders have published significant discoveries in the field of RNAi. In addition, we have assembled an experienced management team to implement our business plan. Members of our management team have led discovery, development and commercialization programs for a number of marketed drugs, including Aranesp, Neulasta, Angiomax and Velcade.

Potential for RNAi Therapeutics

      Proteins perform many of the vital functions of the cell and of the human body. Although the roles they play are generally beneficial, in certain circumstances, proteins can be harmful. Many human diseases are caused by the inappropriate behavior of proteins. A particular protein may, for example, be present in too great a quantity, be too active, or appear in the wrong place or at the wrong time. In these circumstances, the ability to stop or reduce production of the protein by selectively silencing the gene that directs its synthesis could be very beneficial in the treatment of the disease.

      Beginning in 1999, our scientific founders described and provided evidence that the RNAi mechanism occurs in mammalian cells and that its immediate trigger is a type of molecule known as small interfering RNA, or siRNA. They showed that laboratory-synthesized siRNAs could be introduced into the cell and suppress production of specific target proteins. Because it is possible, in theory, to design and synthesize siRNAs specific for any gene of interest, we believe that RNAi therapeutics have the potential to become a broad new class of drugs. We believe that RNAi therapeutics could offer the following benefits:

  •  Ability to treat a broad range of diseases. Given the availability of the base sequence of the entire human genome, in theory, it should be possible to design siRNAs to suppress the production of virtually any human protein whose presence or activity causes disease.

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  •  Ability to target proteins that cannot be targeted effectively by existing drug classes. Many proteins that play important roles in disease cannot be targeted effectively with small molecules and therapeutic proteins, including monoclonal antibodies. In theory, siRNAs should not face the same limitations as these drug classes and, therefore, we believe RNAi therapeutics will be able to target proteins that small molecule and protein drugs cannot currently target.
 
  •  An inherently potent mechanism of action. Each siRNA molecule can trigger destruction of multiple messenger RNA molecules, each of which could otherwise direct the synthesis of many protein molecules. As a result, one siRNA molecule may effectively be able to block the activity of many protein molecules. This inherent potency of the RNAi mechanism suggests a potentially high degree of potency for RNAi therapeutics.
 
  •  Simplified discovery of drug candidates. Identification of siRNA drug candidates has the potential to be much simpler and take considerably less time than other drug classes because, in theory, it will involve a relatively standard process that can be applied in a similar fashion to many successive product candidates.

None of these potential benefits has yet been proven. If we are unable to design siRNAs with sufficient stability and the ability to enter tissues and cells, we will not be able to develop safe and effective RNAi therapeutics.

Our Business Strategy

      Our strategy is to use our strong intellectual property position and our expertise in RNAi to develop and commercialize RNAi therapeutics. The key elements of our business strategy are as follows:

  •  Pursue product opportunities in a phased approach based on the evolving capabilities of our product engine. We are implementing a phased approach to product development that we believe will allow us to initiate product development activities in three main phases:

  —  Direct RNAi Therapeutics: We intend to utilize the current capabilities of our product engine by focusing our efforts on developing RNAi therapeutics that can be administered directly at diseased parts of the body, such as the eye, the brain or the lungs. As part of this phase, we have initiated Direct RNAi programs focused on AMD and PD.
 
  —  Systemic RNAi Therapeutics for liver-based diseases: As we extend the capabilities of our product engine, we intend to develop RNAi therapeutics for liver-based diseases because it appears, on the basis of early preclinical evidence, that the liver takes up siRNAs more readily than other tissues.
 
  —  Systemic RNAi Therapeutics for other diseases: As a third phase of our product development strategy, we will seek to develop RNAi therapeutics that exert their effects in tissues other than the liver. We believe achievement of this objective could permit us to develop Systemic RNAi drugs for a broad range of diseases, such as cancer and autoimmune diseases.

  •  Maintain our strong intellectual property position in the RNAi field. We believe we have a strong intellectual property position relating to the development and commercialization of siRNAs as therapeutics. To build upon our existing intellectual property position, we are focusing on patents and patent applications covering fundamental aspects of siRNAs, chemical modifications to siRNAs and specific targets for RNAi therapeutics.
 
  •  Capitalize on our expertise in RNAi and our intellectual property position to gain access to additional resources to develop and commercialize RNAi therapeutics. We believe that we can use our expertise and the strength of our intellectual property to drive the formation of strategic alliances that will provide us with funding and access to important additional resources. We intend to take an active role in these alliances, including maintaining certain development and commercialization rights. We also intend to use our early alliances to expand our own capabilities so that in the future we will be able to develop and commercialize our therapeutic products independently.

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  •  Leverage our intellectual property position by licensing our technology to generate revenues. We intend to generate revenues by granting licenses to our intellectual property to third parties for the development of therapeutics outside our areas of focus and for the development of research reagents and services.

Our Product Engine

      To realize the potential of RNAi therapeutics as a broad new class of drugs, we are developing a set of biological and chemical methods and know how that we expect to apply in a systematic way to develop RNAi therapeutics for a variety of diseases. We refer to these methods and their systematic application as our product engine. We believe that our product engine will provide a systematic approach for identifying siRNA drug candidates, using the following steps:

  •  Sequence selection  — the use of computational tools to design siRNA sequences likely to be selective for the gene that is to be silenced,
 
  •  Potency selection — the synthesis and comparison of different siRNAs to determine which are most potent in silencing the target gene,
 
  •  Stabilization  — the introduction of chemical modifications into potent siRNAs to make them more stable within the body, and
 
  •  Improvement of biodistribution  — the addition of further chemical groups to stabilized siRNAs to improve their ability to reach different parts of the body.

Our Development Programs

      Using the current capabilities of our product engine, we have initiated two programs to identify specific siRNAs for potential further development as Direct RNAi drug candidates. We expect to initiate additional programs as the capabilities of our product engine evolve. Our current programs are focused on AMD and PD.

Age-Related Macular Degeneration

      AMD can cause severe deterioration of vision and may ultimately cause blindness. The National Eye Institute estimates that over 1.6 million adults over 50 in the United States suffer from advanced AMD. The siRNAs we are exploring would treat wet AMD, a subtype of AMD often associated with severe vision loss. AMD Alliance International estimates that approximately 200,000 new cases of wet AMD are diagnosed in North America each year and 500,000 new cases of wet AMD are diagnosed worldwide each year. We are developing a RNAi therapeutic intended to treat wet AMD by suppressing production of the protein known as vascular endothelial growth factor, or VEGF. VEGF is believed to play a key role in wet AMD by stimulating the growth and leakage of blood vessels that disrupt the retina. We are currently evaluating several siRNAs designed to inhibit the production of VEGF in animal models and expect to begin a clinical trial for an AMD product candidate in 2005. Any siRNA we develop for AMD will be a Direct RNAi drug administered by injection into the eye, the mode of administration used for two drug candidates currently in late stage clinical trials by other companies. We have filed patent applications relating to the use of siRNA to suppress VEGF production for therapeutic purposes.

Parkinson’s Disease

      PD is a disorder of the nervous system that the American Parkinson Disease Association estimates afflicts more than 1.5 million people in the United States, and the World Health Organization estimates afflicts approximately four million people worldwide. Current treatments for PD largely focus on treating the symptoms of the disease, which are caused by the shortage of a substance known as dopamine in the brain. There are no drugs currently approved to treat the cause of the disease. The siRNAs we have started to explore as potential treatments for PD are based on treating the suspected cause of PD rather than the

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symptoms. Instead of replacing the function of missing dopamine in persons with PD, our approach would attempt to prevent the death of dopamine-producing cells that causes this shortage. Based on recent scientific findings, we believe that it may be possible to prevent the death of these cells by using an siRNA to suppress production of a protein known as alpha-synuclein. We recently entered into a collaboration with the Mayo Foundation for Medical Education and Research and the Mayo Clinic Jacksonville, to explore this possibility in animal models of PD. We plan to begin animal model testing by the end of 2004.

Early Stage Company

      We are an early stage company and the approach we are taking to discover and develop drugs is novel and unproven. Our potential product candidates are in early stages of preclinical development where failure is common. Neither we nor any other company has received regulatory approval to market therapeutics utilizing siRNAs. We do not expect any of our product candidates, if successfully developed, to receive regulatory approval for commercial sale for at least several years. See “Risk Factors” beginning on page 11 for risks related to an investment in our common stock.

Corporate Information

      Alnylam Pharmaceuticals, Inc. was incorporated in Delaware in May 2003. Alnylam Europe, AG, which was incorporated in Germany in June 2000 under the name Ribopharma AG, and Alnylam U.S., Inc., which was incorporated in Delaware in June 2002, are wholly owned subsidiaries of Alnylam Pharmaceuticals, Inc. Alnylam Pharmaceuticals, Inc. acquired Alnylam Europe, AG in July 2003. Our principal executive office is located at 300 Third Street, Cambridge, Massachusetts 02142, and our telephone number is (617) 551-8200. Our internet address is www.alnylam.com. The information on our web site is not incorporated by reference into this prospectus and should not be considered to be a part of this prospectus. Our web site address is included in this prospectus as an inactive technical reference only.

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THE OFFERING

 
Common stock offered 5,000,000 shares
 
Common stock to be outstanding after this offering 19,283,309 shares
 
Use of proceeds We expect to use the net proceeds of this offering to fund research and development activities, to fund the acquisition, licensing and protection of intellectual property rights, and for general corporate purposes. See “Use of Proceeds” for more information.
 
Proposed NASDAQ National Market symbol ALNY
 
Risk factors See “Risk Factors” and the other information included in this prospectus for a discussion of factors you should carefully consider before deciding to invest in shares of our common stock.

      The number of shares of common stock to be outstanding after this offering is based on the number of shares outstanding as of March 31, 2004 and excludes:

  •  1,942,908 shares of common stock issuable upon the exercise of outstanding stock options as of March 31, 2004 with a weighted average exercise price of $0.61 per share;
 
  •  65,787 shares of common stock issuable upon the exercise of outstanding warrants as of March 31, 2004 with a weighted average exercise price of $8.55 per share; and
 
  •  an aggregate of 4,151,643 shares of common stock reserved for issuance under our stock option plans and stock purchase plan.

      Except as otherwise noted, all information in this prospectus:

  •  assumes no exercise by the underwriters of their over-allotment option to purchase additional shares of common stock in the offering;
 
  •  reflects a 1-for-1.9 reverse stock split of our outstanding shares of common stock effected on May 7, 2004;
 
  •  gives effect to the conversion of all outstanding shares of convertible preferred stock into shares of common stock upon the closing of the offering; and
 
  •  gives effect to the filing of our restated certificate of incorporation and the adoption of our amended and restated bylaws upon the closing of the offering.

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SUMMARY CONDENSED CONSOLIDATED FINANCIAL DATA

      You should read the following summary financial data in conjunction with “Selected Condensed Consolidated Financial Data”, “Management’s Discussion and Analysis of Financial Condition and Results of Operations” and our consolidated financial statements and related notes, all included elsewhere in this prospectus.

      Pro forma basic and diluted net loss per common share have been calculated assuming the conversion of all outstanding shares of convertible preferred stock into shares of common stock. On July 31, 2003, we acquired all of the outstanding voting shares of Alnylam Europe for $1.5 million in cash and 815,376 shares of our common stock, and assumed $7.1 million of debt. In connection with the acquisition, we allocated $4.6 million of the purchase price to purchased in-process research and development, which we expensed immediately. The results of Alnylam Europe have been included in our consolidated results from the date of acquisition.

                                   
Period
from Inception Three Months
(June 14, 2002) Ended March 31,
through Year Ended
December 31, 2002 December 31, 2003 2003 2004




($ in thousands, except per share data)
Consolidated Statements of Operations Data:
                               
Revenue from research collaborators
  $     $ 176     $     $ 134  
     
     
     
     
 
Costs and expenses
                               
 
Research and development(1)
    3,342       13,097       1,266       10,435  
 
General and administrative(1)
    880       7,527       908       3,031  
 
Purchased in-process research and development
          4,609              
     
     
     
     
 
Total operating costs and expenses
    4,222       25,233       2,174       13,466  
Loss from operations
    (4,222 )     (25,057 )     (2,174 )     (13,332 )
Other income (expense), net
    86       24       23       (250 )
     
     
     
     
 
Net loss
    (4,136 )     (25,033 )     (2,151 )     (13,582 )
Accretion of redeemable convertible preferred stock
    (748 )     (2,906 )     (435 )     (1,962 )
     
     
     
     
 
Net loss attributable to common stockholders
    (4,884 )     (27,939 )     (2,586 )     (15,544 )
     
     
     
     
 
Net loss per common share (basic and diluted)
  $ (14.74 )   $ (29.64 )     (5.56 )     (9.39 )
     
     
     
     
 
 
Weighted average shares used to compute basic and diluted net loss per common share
    331,341       942,665       465,349       1,655,168  
Pro forma net loss per common share (basic and diluted)
          $ (3.17 )           $ (1.11 )
             
             
 
 
Shares used to compute basic and diluted pro forma net loss per common share
            7,977,685               12,935,145  


(1)  Noncash stock-based compensation expense included in these amounts are as follows:

                                 
    Research and development
  $ 172     $ 2,832     $ 500     $ 1,724  
    General and administrative
          623       19       507  
     
     
     
     
 
        Total noncash stock-based compensation
  $ 172     $ 3,455     $ 519     $ 2,231  
     
     
     
     
 

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     The as adjusted balance sheet data as of March 31, 2004 gives effect to the conversion of all shares of convertible preferred stock into shares of common stock and the sale of 5,000,000 shares of common stock offered by this prospectus at an assumed initial public offering price of $11.00 per share, the mid-point of the estimated price range shown on the cover page of this prospectus, after deducting estimated underwriting discounts and offering expenses.

                 
As of March 31, 2004

Actual As Adjusted


($ in thousands)
Consolidated Balance Sheet Data:
               
Cash and cash equivalents
  $ 21,612     $ 70,862  
Working capital
    14,393       63,643  
Total assets
    39,339       88,589  
Note payable
    1,879       1,879  
Redeemable convertible preferred stock
    66,875        
Total stockholders’ equity (deficit)
    (39,080 )     77,045  

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RISK FACTORS

      An investment in our common stock involves a high degree of risk. In deciding whether to invest, you should carefully consider the following risk factors, as well as the other information contained in this prospectus, including our consolidated financial statements and the related notes. Any of the following risks could have a material adverse effect on our business, financial condition, results of operations and prospects and cause the value of our stock to decline, which could cause you to lose all or part of your investment.

Risks Related to Our Business

Risks Related to Being an Early Stage Company

Because we have a short operating history, there is a limited amount of information about us upon which you can evaluate our business and prospects.

      Our operations began in June 2002 and we have only a limited operating history upon which you can evaluate our business and prospects. In addition, as an early stage company, we have limited experience and have not yet demonstrated an ability to successfully overcome many of the risks and uncertainties frequently encountered by companies in new and rapidly evolving fields, particularly in the biopharmaceutical area. For example, to execute our business plan, we will need to successfully:

  •  execute product development activities using an unproven technology;
 
  •  build and maintain a strong intellectual property portfolio;
 
  •  gain acceptance for the development and commercialization of our products;
 
  •  develop and maintain successful strategic relationships; and
 
  •  manage our spending as costs and expenses increase due to clinical trials, regulatory approvals and commercialization.

If we are unsuccessful in accomplishing these objectives, we may not be able to develop product candidates, raise capital, expand our business or continue our operations.

The approach we are taking to discover and develop novel drugs is unproven and may never lead to marketable products.

      We have concentrated our efforts and therapeutic product research on RNAi technology, and our future success depends on the successful development of this technology and products based on RNAi technology. Neither we nor any other company has received regulatory approval to market therapeutics utilizing siRNAs. The scientific discoveries that form the basis for our efforts to discover and develop new drugs are relatively new. The scientific evidence to support the feasibility of developing drugs based on these discoveries is both preliminary and limited. Skepticism as to the feasibility of developing RNAi therapeutics has been expressed in scientific literature. For example, Richard Robinson, in an article titled “RNAi Therapeutics, How Likely, How Soon?” published in Public Library of Science Biology , indicates that no clinical trials have been commenced for any RNAi therapeutic, that two similar but more advanced therapies that showed promise in the laboratory have not yet demonstrated equal success in humans, that stability and delivery of siRNAs are obstacles intrinsic to the biochemical nature of RNA and that the human body’s reaction to RNAi therapies is still unknown.

      Very few drug candidates based on these discoveries have ever been tested in animals, and none has been tested in humans. siRNAs, the class of molecule we are trying to develop into drugs, do not naturally possess the inherent properties typically required of drugs, such as the ability to be stable in the body long enough to reach the tissues in which their effects are required, nor the ability to enter cells within these tissues in order to exert their effects. We currently have only limited data, and no conclusive evidence, to suggest that we can introduce these drug-like properties into siRNAs. We may spend large amounts of money trying to introduce these properties, and never succeed in doing so. In addition, these compounds may not

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demonstrate in patients the chemical and pharmacological properties ascribed to them in laboratory studies, and they may interact with human biological systems in unforeseen, ineffective or harmful ways. As a result, we may never succeed in developing a marketable product. If we do not successfully develop and commercialize drugs based upon our technological approach, we will not become profitable and the value of our common stock will decline.

      Further, our focus solely on RNAi technology for developing drugs as opposed to multiple, more proven technologies for drug development increases the risks associated with the ownership of our common stock. If we are not successful in developing a product candidate using RNAi technology, we may be required to change the scope and direction of our product development activities. In that case, we may not be able to identify and implement successfully an alternative product development strategy.

Risks Related to Our Financial Results and Need for Financing

We have a history of losses and may never be profitable.

      We have experienced significant operating losses since our inception. We had net losses of $25.0 million for the year ended December 31, 2003 and $13.6 million for the quarter ended March 31, 2004. As of March 31, 2004, we had a deficit accumulated in the development stage of $43.9 million. To date, we have not developed any products nor generated any revenues from the sale of products. Further, we do not expect to generate any such revenues in the foreseeable future. We expect our annual operating losses to increase over the next several years as we expand our efforts to discover, develop and commercialize RNAi therapeutics. We anticipate that the majority of any revenue we generate over the next several years will be from collaborations with pharmaceutical companies, but cannot be certain that we will be able to secure these collaborations or to meet the obligations or achieve any milestones that we may be required to meet or achieve to receive payments. To date, our collaboration and license agreements have provided us with minimal revenue. If we are unable to secure revenue from collaborations, we may be unable to continue our efforts to discover, develop and commercialize RNAi therapeutics without raising financing from other sources.

      To become and remain profitable, we must succeed in developing and commercializing novel drugs with significant market potential. This will require us to be successful in a range of challenging activities that we have yet to initiate, including preclinical testing and clinical trial stages of development, obtaining regulatory approval for these novel drugs, and manufacturing, marketing and selling them. We may never succeed in these activities, and may never generate revenues that are significant enough to achieve profitability. Even if we do achieve profitability, we may not be able to sustain or increase profitability on a quarterly or annual basis. If we cannot become and remain profitable, the market price of our common stock could decline. In addition, we may be unable to raise capital, expand our business, diversify our product offerings or continue our operations.

We will require substantial additional funds to complete our research and development activities and if additional funds are not available we may need to critically limit, significantly scale back or cease our operations.

      We have used substantial funds to develop our RNAi technologies and will require substantial funds to conduct further research and development, including preclinical testing and clinical trials of any product candidates, and to manufacture and market any products that are approved for commercial sale. Because the successful development of our products is uncertain, we are unable to estimate the actual funds we will require to develop and commercialize them. We believe that the net proceeds from this offering and our existing resources will be sufficient to support our current operating plan until at least the end of 2005, during which time we expect to extend the capabilities of our product engine, initiate development of a product for the treatment of wet AMD and continue to prosecute patent applications and otherwise build and maintain our intellectual property portfolio.

      However, our future capital requirements and the period for which we expect the net proceeds from this offering and our existing resources to support our operations may vary from what we expect. We have based

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our expectations on a number of factors, many of which are difficult to predict or are outside of our control, including:

  •  our progress in demonstrating that siRNAs can be active as drugs;
 
  •  our ability to develop relatively standard procedures for selecting and modifying siRNA drug candidates;
 
  •  progress in our research and development programs, as well as the magnitude of these programs;
 
  •  the timing, receipt, and amount of milestone and other payments, if any, from present and future collaborators, if any;
 
  •  our ability to establish and maintain additional collaborative arrangements;
 
  •  the resources, time and costs required to initiate and complete our preclinical and clinical trials, obtain regulatory approvals, protect our intellectual property and obtain and maintain licenses to third-party intellectual property; and
 
  •  the timing, receipt and amount of sales and royalties, if any, from our potential products.

If our estimates and predictions relating to these factors are incorrect, we may need to modify our operating plan.

      We will be required to seek additional funding in the future and intend to do so through collaborative arrangements and public or private equity offerings and debt financings. Additional funds may not be available to us on acceptable terms or at all. In addition, the terms of any financing may adversely affect the holdings or the rights of our stockholders. For example, if we raise additional funds by issuing equity securities, further dilution to our then-existing stockholders will result. Debt financing, if available, may involve restrictive covenants that could limit our flexibility in conducting future business activities. If we are unable to obtain funding on a timely basis, we may be required to significantly curtail one or more of our research or development programs. We also could be required to seek funds through arrangements with collaborators or others that may require us to relinquish rights to some of our technologies, product candidates or products that we would otherwise pursue on our own.

Risks Related to Our Dependence on Third Parties

 
We may not be able to execute our business strategy if we are unable to enter into alliances with other companies that can provide capabilities and funds for the development and commercialization of our drug candidates. If we are unsuccessful in forming or maintaining these alliances on favorable terms, our business may not succeed.

      We do not have any capability for sales, marketing or distribution and have limited capabilities for drug development. Accordingly, we must enter into alliances with other companies that can provide such capabilities. For example, we may enter into alliances with major pharmaceutical companies to jointly develop specific drug candidates and to jointly commercialize them if they are approved. In such alliances, we would expect our pharmaceutical collaborators to provide substantial capabilities in clinical development, regulatory affairs, marketing and sales. We may not be successful in entering into any such alliances on favorable terms. Even if we do succeed in securing such alliances, we may not be able to maintain them if, for example, development or approval of a drug candidate is delayed or sales of an approved drug are disappointing. Furthermore, any delay in entering into collaboration agreements could delay the development and commercialization of our drug candidates and reduce their competitiveness even if they reach the market. Any such delay related to our collaborations could adversely affect our business.

      In addition, we expect that we will need to enter into alliances with other companies to provide substantial additional cash for development and potential commercialization of our drug candidates. We have entered into a collaboration agreement with Merck under which Merck may elect to pay a portion of the costs to develop and market certain drug candidates that we may initially develop based on information and materials provided by Merck. Merck is under no obligation to pay any of the development and

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commercialization costs for any of these drug candidates, and they may elect not to do so. For drug candidates from our Merck collaboration that Merck does not elect to fund, and for drug candidates we may develop outside of this collaboration, we expect to seek additional collaborations with other pharmaceutical companies to fund all or part of the costs of drug development and commercialization. We may not be able to enter into such collaborations, and the terms of any collaboration agreement we do secure may not be favorable to us. If we are not successful in our efforts to enter into a collaboration arrangement with respect to a particular drug candidate, we may not have sufficient funds to develop this or any other drug candidate internally, or to bring any drug candidates to market. If we do not have sufficient funds to develop and bring our drug candidates to market, we will not be able to generate sales revenues from these drug candidates, and this will substantially harm our business.

If any collaborator terminates or fails to perform its obligations under agreements with us, the development and commercialization of our drug candidates could be delayed or terminated.

      Our expected dependence on collaborators for capabilities and funding means that our business would be adversely affected if any collaborator terminates its collaboration agreement with us or fails to perform its obligations under that agreement. Our current or future collaborations, if any, may not be scientifically or commercially successful. Disputes may arise in the future with respect to the ownership of rights to technology or products developed with collaborators, which could have an adverse effect on our ability to develop and commercialize any affected product candidate.

      Our current collaborations allow, and we expect that any future collaborations will allow, either party to terminate the collaboration for a material breach by the other party. If a collaborator terminates its collaboration with us, for breach or otherwise, it would be difficult for us to attract new collaborators and could adversely affect how we are perceived in the business and financial communities. In addition, a collaborator could determine that it is in its financial interest to:

  •  pursue alternative technologies or develop alternative products, either on its own or jointly with others, that may be competitive with the products on which it is collaborating with us or which could affect its commitment to the collaboration with us;
 
  •  pursue higher-priority programs or change the focus of their development programs, which could affect the collaborator’s commitment to us; or
 
  •  if it has marketing rights, choose to devote fewer resources to the marketing of our product candidates, if any are approved for marketing, than they do for product candidates of their own development.

If any of these occur, the development and commercialization of one or more drug candidates could be delayed, curtailed or terminated because we may not have sufficient financial resources or capabilities to continue such development and commercialization on our own.

      In addition, we have entered into a research collaboration agreement with the Mayo Foundation for Medical Education and Research and the Mayo Clinic Jacksonville, which we refer to collectively as the Mayo Clinic, in connection with our PD program and we may enter into similar agreements in the future. Either party may terminate this research collaboration agreement upon a breach by the other party. The agreement provides us with an option to acquire an exclusive license to any intellectual property or inventions developed in connection with the collaboration. However, in order to secure any such license, we and the Mayo Clinic must agree on terms within 90 days of the exercise of the option. We may not be able to enter into any such license on reasonable terms, if at all.

We have no manufacturing experience or resources and we must incur significant costs to develop this expertise or rely on third parties to manufacture our products.

      We have no manufacturing experience. In order to develop products, apply for regulatory approvals and commercialize our products, we will need to develop, contract for, or otherwise arrange for the necessary manufacturing capabilities. We expect to rely on others to manufacture the materials we will require for any clinical trials that we initiate. Only a limited number of manufacturers can supply synthetic RNAi, and we

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have not secured any long-term commercial supply arrangements. The manufacturing process for any products that we may develop is an element of the FDA approval process and we will need to contract with manufacturers who can meet the FDA requirements on an ongoing basis. In addition, if we receive the necessary regulatory approval for any product candidate, we also expect to rely on third parties, including our collaborators, to produce materials required for commercial production. We may experience difficulty in obtaining adequate manufacturing capacity for our needs. If we are unable to obtain or maintain contract manufacturing for these product candidates, or to do so on commercially reasonable terms, we may not be able to successfully develop and commercialize our products.

      To the extent that we enter into manufacturing arrangements with third parties, we will depend on these third parties to perform their obligations in a timely manner and consistent with regulatory requirements. The failure of a third-party manufacturer to perform its obligations as expected could adversely affect our business in a number of ways, including:

  •  we may not be able to initiate or continue clinical trials of products that are under development;
 
  •  we may be delayed in submitting applications for regulatory approvals for our products;
 
  •  we may lose the cooperation of our collaborators;
 
  •  we may be required to cease distribution or recall some or all batches of our products; and
 
  •  ultimately, we may not be able to meet commercial demands for our products.

      If a third-party manufacturer with whom we contract fails to perform its obligations, we may be forced to manufacture the materials ourselves, for which we may not have the capabilities or resources, or enter into an agreement with a different third-party manufacturer, which we may not be able to do on reasonable terms, if at all. In addition, if we are required to change manufacturers for any reason, we will be required to verify that the new manufacturer maintains facilities and procedures that comply with quality standards and with all applicable regulations and guidelines. The delays associated with the verification of a new manufacturer could negatively affect our ability to develop product candidates in a timely manner or within budget. Furthermore, a manufacturer may possess technology related to the manufacture of our product candidate that such manufacturer owns independently. This would increase our reliance on such manufacturer or require us to obtain a license from such manufacturer in order to have another third party manufacture our products.

We have no sales, marketing or distribution experience and expect to depend significantly on third parties who may not successfully commercialize our products.

      We have no sales, marketing or distribution experience. We expect to rely on third parties to launch and market certain of our product candidates, if approved. We may have limited or no control over the sales, marketing and distribution activities of these third parties. Our future revenues may depend heavily on the success of the efforts of these third parties.

      To develop internal sales, distribution and marketing capabilities, we will have to invest significant amounts of financial and management resources. For products where we decide to perform sales, marketing and distribution functions ourselves, we could face a number of additional risks, including:

  •  we may not be able to attract and build a significant marketing or sales force;
 
  •  the cost of establishing a marketing or sales force may not be justifiable in light of the revenues generated by any particular product; and
 
  •  our direct sales and marketing efforts may not be successful.

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Risks Related to Managing Our Operations

If we are unable to attract and retain qualified key management and scientists, staff consultants and advisors, our ability to implement our business plan may be adversely affected.

      We are highly dependent upon our senior management and scientific staff. The loss of the service of any of the members of our senior management, including Dr. John Maraganore, our President and Chief Executive Officer, may significantly delay or prevent the achievement of product development and other business objectives. Our employment agreements with our key personnel are terminable without notice. We do not carry key man life insurance on any of our key employees.

      Although we have generally been successful in our recruiting efforts, we face intense competition for qualified individuals from numerous pharmaceutical and biotechnology companies, universities, governmental entities and other research institutions. We may be unable to attract and retain suitably qualified individuals, and our failure to do so could have an adverse effect on our ability to implement our business plan.

We may have difficulty managing our growth and expanding our operations successfully as we seek to evolve from a company primarily involved in discovery and preclinical testing into one that develops and commercializes drugs.

      Since we commenced operations in 2002, we have grown rapidly to over 60 employees, with offices and laboratory space in both Cambridge, Massachusetts and Kulmbach, Germany. This rapid and substantial growth, and the geographical separation of our sites, has placed a strain on our administrative and operational infrastructure, and we anticipate that our continued growth will have a similar impact. If drug candidates we develop enter and advance through clinical trials, we will need to expand our development, regulatory, manufacturing, marketing and sales capabilities or contract with other organizations to provide these capabilities for us. As our operations expand, we expect that we will need to manage additional relationships with various collaborators, suppliers and other organizations. Our ability to manage our operations and growth will require us to continue to improve our operational, financial and management controls, reporting systems and procedures in at least two different countries. We may not be able to implement improvements to our management information and control systems in an efficient or timely manner and may discover deficiencies in existing systems and controls.

If we are unable to manage the challenges associated with our international operations, the growth of our business could be limited.

      In addition to our operations in Cambridge, Massachusetts, we operate an office and laboratory in Kulmbach, Germany. We are subject to a number of risks and challenges that specifically relate to these international operations. Our international operations may not be successful if we are unable to meet and overcome these challenges, which could limit the growth of our business and may have an adverse effect on our business and operating results. These risks include:

  •  fluctuations in foreign currency exchange rates that may increase the U.S. dollar cost of our international operations;
 
  •  difficulty managing operations in multiple locations, which could adversely affect the progress of our product candidate development program and business prospects;
 
  •  local regulations that may restrict or impair our ability to conduct biotechnology-based research and development;
 
  •  foreign protectionist laws and business practices that favor local competition; and
 
  •  failure of local laws to provide the same degree of protection against infringement of our intellectual property, which could adversely affect our ability to develop product candidates or reduce future product or royalty revenues, if any, from product candidates we may develop.

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Risks Related to Our Industry

Risks Related to Development, Clinical Testing and Regulatory Approval of Our Drug Candidates

Any drug candidates we develop may fail in development or be delayed so much that they do not become commercially viable.

      Preclinical testing and clinical trials of new drug candidates are lengthy and expensive and the historical failure rate for drug candidates is high. We may not be able to advance any product candidates into clinical trials. Even if we do successfully enter into clinical studies, the results from preclinical testing of a drug candidate may not predict the results that will be obtained in human clinical trials. We, the FDA or other applicable regulatory authorities may suspend clinical trials of a drug candidate at any time if we or they believe the subjects or patients participating in such trials are being exposed to unacceptable health risks, or for other reasons. Among other reasons, adverse side effects of a drug candidate on subjects or patients in a clinical trial could result in the FDA or foreign regulatory authorities suspending or terminating the trial and refusing to approve a particular drug candidate for any or all indications of use.

      Clinical trials of a new drug candidate require the enrollment of a sufficient number of patients, including patients who are suffering from the disease the drug candidate is intended to treat and who meet other eligibility criteria. Rates of patient enrollment are affected by many factors, including the size of the patient population, the nature of the protocol, the proximity of patients to clinical sites, the availability of effective treatments for the relevant disease and the eligibility criteria for the clinical trial. Delays in patient enrollment can result in increased costs and longer development times.

      Clinical trials also require the review and oversight of institutional review boards, referred to as IRBs, which approve and continually review clinical investigations and protect the rights and welfare of human subjects. Inability to obtain or delay in obtaining IRB approval can prevent or delay the initiation and completion of clinical trials, and the FDA may decide not to consider any data or information derived from a clinical investigation not subject to initial and continuing IRB review and approval in support of a marketing application.

      Our drug candidates that we develop may encounter problems during clinical trials that will cause us or regulatory authorities to delay or suspend these trials, or that will delay the analysis of data from these trials. If we experience any such problems, we may not have the financial resources to continue development of the drug candidate that is affected, or development of any of our other drug candidates. We may also lose, or be unable to enter into, collaborative arrangements for the affected drug candidate and for other drug candidates we are developing.

      Delays in clinical trials could reduce the commercial viability of our drug candidates. Any of the following could delay our clinical trials:

  •  discussions with the FDA or comparable foreign authorities regarding the scope or design of our clinical trials;
 
  •  problems in engaging IRBs to oversee trials or problems in obtaining IRB approval of studies;
 
  •  delays in enrolling patients and volunteers into clinical trials;
 
  •  high drop-out rates for patients and volunteers in clinical trials;
 
  •  negative results of clinical trials;
 
  •  inadequate supply or quality of drug candidate materials or other materials necessary for the conduct of our clinical trials;
 
  •  serious and unexpected drug-related side effects experienced by participants in our clinical trials; or
 
  •  unfavorable FDA inspection and review of a clinical trial site or records of any clinical or preclinical investigation.

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The FDA approval process may be delayed for any drugs we develop that require the use of specialized drug delivery devices.

      Some drug candidates that we develop may need to be administered using specialized drug delivery devices. We believe that any product candidate we develop for PD will need to be administered using such a device. While we expect to rely on drug delivery systems that have been approved by the FDA or other regulatory agencies to deliver drugs like ours to similar physiological sites, we may need to modify the design or labeling of such delivery device for some products we may develop. In such an event, the FDA may regulate the product as a combination product or require additional approvals or clearances for the modified delivery device. Further, to the extent the specialized delivery device is owned by another company, we would need that company’s cooperation to implement the necessary changes to the device, or its labeling, and to obtain any additional approvals or clearances. Obtaining such additional approvals or clearances, and cooperation of such other companies, when necessary, could significantly delay and increase the cost of obtaining marketing approval, which could reduce the commercial viability of our drug candidate.

We may be unable to obtain U.S. or foreign regulatory approval and, as a result, be unable to commercialize our drug candidates.

      Our drug candidates are subject to extensive governmental regulations relating to development, clinical trials, manufacturing and commercialization. Rigorous preclinical testing and clinical trials and an extensive regulatory approval process are required to be successfully completed in the United States and in many foreign jurisdictions before a new drug can be sold. Satisfaction of these and other regulatory requirements is costly, time consuming, uncertain and subject to unanticipated delays. It is possible that none of the drug candidates we may develop will obtain the appropriate regulatory approvals necessary for us or our collaborators to begin selling them.

      We have no experience in conducting and managing the clinical trials necessary to obtain regulatory approvals, including approval by the FDA. The time required to obtain FDA and other approvals is unpredictable but typically exceeds five years following the commencement of clinical trials, depending upon the complexity of the drug candidate. Any analysis we perform of data from preclinical and clinical activities is subject to confirmation and interpretation by regulatory authorities, which could delay, limit or prevent regulatory approval. We may also encounter unexpected delays or increased costs due to new government regulations, for example, from future legislation or administrative action, or from changes in FDA policy during the period of product development, clinical trials and FDA regulatory review.

      Because the drugs we are intending to develop may represent a new class of drug, the FDA has not yet established any definitive policies, practices or guidelines in relation to these drugs. While we expect any AMD or PD product candidates we develop will be regulated as a new drug under the Federal Food, Drug, and Cosmetic Act, the FDA could decide to regulate them or other products we may develop as biologics under the Public Health Service Act. The lack of such policies, practices or guidelines may hinder or slow review by the FDA of any regulatory filings that we may submit. Moreover, the FDA may respond to these submissions by defining requirements we may not have anticipated. Such responses could lead to significant delays in the clinical development of our product candidates. In addition, because there are approved treatments for both AMD and PD, in order to receive regulatory approval, we will need to demonstrate through clinical trials that the product candidates we develop to treat these diseases, if any, are not only safe and effective, but safer or more effective than existing products.

      Any delay or failure in obtaining required approvals could have a material adverse effect on our ability to generate revenues from the particular drug candidate. Furthermore, any regulatory approval to market a product may be subject to limitations on the indicated uses for which we may market the product. These limitations may limit the size of the market for the product.

      We are also subject to numerous foreign regulatory requirements governing the conduct of clinical trials, manufacturing and marketing authorization, pricing and third-party reimbursement. The foreign regulatory approval process includes all of the risks associated with FDA approval described above as well as risks

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attributable to the satisfaction of local regulations in foreign jurisdictions. Approval by the FDA does not assure approval by regulatory authorities outside the United States.

Even if we obtain regulatory approvals, our marketed drugs will be subject to ongoing regulatory review. If we fail to comply with continuing U.S. and foreign regulations, we could lose our approvals to market drugs and our business would be seriously harmed.

      Following any initial regulatory approval of any drugs we may develop, we will also be subject to continuing regulatory review, including the review of adverse drug experiences and clinical results that are reported after our drug products are made commercially available. This would include results from any post-marketing tests or vigilance required as a condition of approval. The manufacturer and manufacturing facilities we use to make any of our drug candidates will also be subject to periodic review and inspection by the FDA. The discovery of any previously unknown problems with the product, manufacturer or facility may result in restrictions on the drug or manufacturer or facility, including withdrawal of the drug from the market. We do not have, and currently do not intend to develop, the ability to manufacture material for our clinical trials or on a commercial scale. Reliance on third-party manufacturers entails risks to which we would not be subject if we manufactured products ourselves, including reliance on the third-party manufacturer for regulatory compliance. Our product promotion and advertising is also subject to regulatory requirements and continuing FDA review.

      If we fail to comply with applicable continuing regulatory requirements, we may be subject to fines, suspension or withdrawal of regulatory approval, product recalls and seizures, operating restrictions and criminal prosecutions.

Even if we receive regulatory approval to market our product candidates, the market may not be receptive to our product candidates upon their commercial introduction, which will prevent us from becoming profitable.

      The product candidates that we are developing are based upon new technologies or therapeutic approaches. Key participants in pharmaceutical marketplaces, such as physicians, third-party payors and consumers, may not accept a product intended to improve therapeutic results based on RNAi technology. As a result, it may be more difficult for us to convince the medical community and third-party payors to accept and use our products.

      Other factors that we believe will materially affect market acceptance of our product candidates include:

  •  the timing of our receipt of any marketing approvals, the terms of any approvals and the countries in which approvals are obtained;
 
  •  the safety, efficacy and ease of administration;
 
  •  the success of our physician education programs;
 
  •  the availability of government and third-party payor reimbursement;
 
  •  the pricing of our products, particularly as compared to alternative treatments; and
 
  •  the availability of alternative effective treatments for the diseases that product candidates we develop are intended to treat.

If we or our collaborators, manufacturers or service providers fail to comply with regulatory laws and regulations, we or they could be subject to enforcement actions, which could affect our ability to market and sell our products and may harm our reputation.

      If we or our collaborators, manufacturers or service providers fail to comply with applicable federal, state or foreign laws or regulations, we could be subject to enforcement actions, which could affect our ability

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to develop, market and sell our products under development successfully and could harm our reputation and lead to reduced acceptance of our products by the market. These enforcement actions include:

  •  warning letters;
 
  •  recalls or public notification or medical product safety alerts;
 
  •  restrictions on, or prohibitions against, marketing our products;
 
  •  restrictions on importation of our products;
 
  •  suspension of review or refusal to approve pending applications;
 
  •  suspension or withdrawal of product approvals;
 
  •  product seizures;
 
  •  injunctions; and
 
  •  civil and criminal penalties and fines.

Any drugs we develop may become subject to unfavorable pricing regulations, third-party reimbursement practices or healthcare reform initiatives, thereby harming our business.

      The regulations that govern marketing approvals, pricing and reimbursement for new drugs vary widely from country to country. Some countries require approval of the sale price of a drug before it can be marketed. In many countries, the pricing review period begins after marketing or product licensing approval is granted. In some foreign markets, prescription pharmaceutical pricing remains subject to continuing governmental control even after initial approval is granted. Although we intend to monitor these regulations, our programs are currently in the early stages of development and we will not be able to assess the impact of price regulations for a number of years. As a result, we might obtain regulatory approval for a product in a particular country, but then be subject to price regulations that delay our commercial launch of the product and negatively impact the revenues we are able to generate from the sale of the product in that country.

      Our ability to commercialize any products successfully also will depend in part on the extent to which reimbursement for these products and related treatments will be available from government health administration authorities, private health insurers and other organizations. Even if we succeed in bringing one or more products to the market, these products may not be considered cost-effective, and the amount reimbursed for any products may be insufficient to allow us to sell our products on a competitive basis. Because our programs are in the early stages of development, we are unable at this time to determine their cost effectiveness and the level or method of reimbursement. Increasingly, the third-party payors who reimburse patients, such as government and private insurance plans, are requiring that drug companies provide them with predetermined discounts from list prices, and are challenging the prices charged for medical products. If the price we are able to charge for any products we develop is inadequate in light of our development and other costs, our profitability could be adversely affected.

      We currently expect that any drugs we develop may need to be administered under the supervision of a physician. Under currently applicable law, drugs that are not usually self-administered may be eligible for coverage by the Medicare program if:

  •  they are incident to a physician’s services;
 
  •  they are “reasonable and necessary” for the diagnosis or treatment of the illness or injury for which they are administered according to accepted standard of medical practice;
 
  •  they are not excluded as immunizations; and
 
  •  they have not been determined by the FDA to be less than effective.

There may be significant delays in obtaining coverage for newly-approved drugs, and coverage may be more limited than the purposes for which the drug is approved by the FDA. Moreover, eligibility for coverage does

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not imply that any drug will be reimbursed in all cases or at a rate that covers our costs, including research, development, manufacture, sale and distribution. Interim payments for new drugs, if applicable, may also not be sufficient to cover our costs and may not be made permanent. Reimbursement rates may vary according to the use of the drug and the clinical setting in which it is used, may be based on payments allowed for lower-cost drugs that are already reimbursed, may be incorporated into existing payments for other services and may reflect budgetary constraints or imperfections in Medicare data. Net prices for drugs may be reduced by mandatory discounts or rebates required by government health care programs or private payors and by any future relaxation of laws that presently restrict imports of drugs from countries where they may be sold at lower prices than in the United States. Third party payors often rely upon Medicare coverage policy and payment limitations in setting their own reimbursement rates. Our inability to promptly obtain coverage and profitable reimbursement rates from both government-funded and private payors for new drugs that we develop could have a material adverse effect on our operating results, our ability to raise capital needed to commercialize products, and our overall financial condition.

      We believe that the efforts of governments and third-party payors to contain or reduce the cost of healthcare will continue to affect the business and financial condition of pharmaceutical and biopharmaceutical companies. A number of legislative and regulatory proposals to change the healthcare system in the United States and other major healthcare markets have been proposed in recent years. These proposals have included prescription drug benefit legislation recently enacted in the United States and healthcare reform legislation recently enacted by certain states. Further federal and state legislative and regulatory developments are possible and we expect ongoing initiatives in the United States to increase pressure on drug pricing. Such reforms could have an adverse effect on anticipated revenues from drug candidates that we may successfully develop.

      Another development that may affect the pricing of drugs is Congressional action regarding drug reimportation into the United States. The Medicare Prescription Drug Plan legislation, which became law in December 2003, requires the Secretary of Health and Human Services to promulgate regulations for drug reimportation from Canada into the United States under some circumstances, including when the drugs are sold at a lower price than in the United States. The Secretary retains the discretion not to implement a drug reimportation plan if he finds that the benefits do not outweigh the cost. Proponents of drug reimportation may attempt to pass legislation that would directly allow reimportation under certain circumstances. If legislation or regulations were passed allowing the reimportation of drugs, they could decrease the price we receive for any products that we may develop, negatively affecting our anticipated revenues and prospects for profitability.

There is a substantial risk of product liability claims in our business. If we are unable to obtain sufficient insurance, a product liability claim against us could adversely affect our business.

      Our business exposes us to significant potential product liability risks that are inherent in the development, manufacturing and marketing of human therapeutic products. Product liability claims could delay or prevent completion of our clinical development programs. If we succeed in marketing products, such claims could result in an FDA investigation of the safety and effectiveness of our products, our manufacturing processes and facilities or our marketing programs, and potentially a recall of our products or more serious enforcement action, or limitations on the indications for which they may be used, or suspension or withdrawal of approval. We currently do not have any product liability insurance, but plan to obtain such insurance at appropriate levels prior to initiating clinical trials and at higher levels prior to marketing any of our drug candidates. Any insurance we obtain may not provide sufficient coverage against potential liabilities. Furthermore, clinical trial and product liability insurance is becoming increasingly expensive. As a result, we may be unable to obtain sufficient insurance at a reasonable cost to protect us against losses caused by product liability claims that could have a material adverse effect on our business.

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If we do not comply with laws regulating the protection of the environment and health and human safety, our business could be adversely affected.

      Our research and development involves the use of hazardous materials, chemicals and various radioactive compounds. We maintain quantities of various flammable and toxic chemicals in our facilities in Cambridge and Germany that are required for our research and development activities. We believe our procedures for storing, handling and disposing these materials in our Cambridge facility comply with the relevant guidelines of the City of Cambridge and the Commonwealth of Massachusetts and the procedures we employ in our German facility comply with the standards mandated by applicable German laws and guidelines. Although we believe that our safety procedures for handling and disposing of these materials comply with the standards mandated by applicable regulations, the risk of accidental contamination or injury from these materials cannot be eliminated. If an accident occurs, we could be held liable for resulting damages, which could be substantial. We are also subject to numerous environmental, health and workplace safety laws and regulations, including those governing laboratory procedures, exposure to blood-borne pathogens and the handling of biohazardous materials.

      Although we maintain workers’ compensation insurance to cover us for costs and expenses we may incur due to injuries to our employees resulting from the use of these materials, this insurance may not provide adequate coverage against potential liabilities. We do not maintain insurance for environmental liability or toxic tort claims that may be asserted against us in connection with our storage or disposal of biological, hazardous or radioactive materials. Additional federal, state and local laws and regulations affecting our operations may be adopted in the future. We may incur substantial costs to comply with, and substantial fines or penalties if we violate, any of these laws or regulations.

Risks Related to Competition

The pharmaceutical market is intensely competitive. If we are unable to compete effectively with existing drugs, new treatment methods and new technologies, we may be unable to commercialize any drugs that we develop.

      The pharmaceutical market is intensely competitive and rapidly changing. Many large pharmaceutical and biotechnology companies, academic institutions, governmental agencies and other public and private research organizations are pursuing the development of novel drugs for the same diseases that we are targeting or expect to target. Many of our competitors have:

  •  much greater financial, technical and human resources than we have at every stage of the discovery, development, manufacture and commercialization of products;
 
  •  more extensive experience in preclinical testing, conducting clinical trials, obtaining regulatory approvals, and in manufacturing and marketing pharmaceutical products;
 
  •  product candidates that are based on previously tested or accepted technologies;
 
  •  products that have been approved or are in late stages of development; and
 
  •  collaborative arrangements in our target markets with leading companies and research institutions.

      We will face intense competition from drugs that have already been approved and accepted by the medical community for the treatment of the conditions for which we may develop drugs. We also expect to face competition from new drugs that enter the market. We believe a significant number of drugs are currently under development, and may become commercially available in the future, for the treatment of conditions for which we may try to develop drugs. For instance, we are currently evaluating siRNAs to suppress VEGF gene activity as a potential drug candidate for the treatment of wet AMD and we are currently evaluating the potential of siRNAs for the treatment of PD. One drug, Visudyne, is already marketed for the treatment of wet AMD, and numerous drugs are currently marketed for the treatment of PD. In addition, we are aware of a number of experimental drugs for the treatment of wet AMD that, unlike our product candidate, are in advanced stages of clinical development. These experimental drugs include Macugen, which is being developed by Eyetech Pharmaceuticals, Inc. in collaboration with Pfizer, Inc., and

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Lucentis, which is being developed by Genentech, Inc. in collaboration with Novartis. These drug candidates may be approved for marketing before our product candidate receives approval. Furthermore, our competitors’ products may be more effective, or marketed and sold more effectively, than any products we develop.

      If we successfully develop drug candidates, and obtain approval for them, we will face competition based on many different factors, including:

  •  the safety and effectiveness of our products;
 
  •  the timing and scope of regulatory approvals for these products;
 
  •  the availability and cost of manufacturing, marketing and sales capabilities;
 
  •  price;
 
  •  reimbursement coverage; and
 
  •  patent position.

      Our competitors may develop or commercialize products with significant advantages over any products we develop based on any of the factors listed above. Our competitors may therefore be more successful in commercializing their products than we are, which could adversely affect our competitive position and business. Competitive products may make any products we develop obsolete or noncompetitive before we can recover the expenses of developing and commercializing our drug candidates. Furthermore, we also face competition from existing and new treatment methods that reduce or eliminate the need for drugs, such as the use of advanced medical devices. The development of new medical devices or other treatment methods for the diseases we are targeting could make our drug candidates noncompetitive, obsolete or uneconomical.

We face competition from other companies that are working to develop novel drugs using technology similar to ours. If these companies develop drugs more rapidly than we do or their technologies are more effective, our ability to successfully commercialize drugs will be adversely affected.

      In addition to the competition we face from competing drugs in general, we also face competition from other companies working to develop novel drugs using technology that competes more directly with our own. We are aware of several other companies that are working in the field of RNAi, including Sirna Therapeutics, Inc., Acuity Pharmaceuticals, Inc., Nucleonics, Inc., Benitec Ltd. and CytRx Corporation. In addition, we granted a license to Isis Pharmaceuticals, Inc., or Isis, under which it may develop RNAi therapeutics against a limited number of targets. Any of these companies may develop its RNAi technology more rapidly and more effectively than us.

      We also compete with companies working to develop antisense-based drugs. Like RNAi product candidates, antisense drugs target mRNAs in order to suppress the activity of specific genes. Isis is currently marketing an antisense drug and has several antisense drug candidates in clinical trials, and another company, Genta Inc., has an antisense drug candidate under FDA review. The development of antisense drugs is more advanced than that of RNAi therapeutics and may become the preferred technology for drugs that target mRNAs to silence specific genes.

Risks Related to Patents, Licenses and Trade Secrets

If we are not able to obtain and enforce patent protection for our discoveries, our ability to develop and commercialize our product candidates will be harmed.

      Our success depends, in part, on our ability to protect proprietary methods and technologies that we develop under the patent and other intellectual property laws of the United States and other countries, so that we can prevent others from unlawfully using our inventions and proprietary information. However, we may not hold proprietary rights to some patents required for us to commercialize our proposed products. Because certain U.S. patent applications are confidential until patents issue, such as applications filed prior to November 29, 2000, or applications filed after such date which will not be filed in foreign countries, third parties may have filed patent applications for technology covered by our pending patent applications without

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our being aware of those applications, and our patent applications may not have priority over those applications. For this and other reasons, we may be unable to secure desired patent rights, thereby losing desired exclusivity. Further, we may be required to obtain licenses under third-party patents to market our proposed products or conduct our research and development or other activities. If licenses are not available to us on acceptable terms, we will not be able to market the affected products or conduct the desired activities.

      Our strategy depends on our ability to rapidly identify and seek patent protection for our discoveries. In addition, we will rely on third-party collaborators to file patent applications relating to proprietary technology that we develop jointly during certain collaborations. The process of obtaining patent protection is expensive and time consuming. If our present or future collaborators fail to file and prosecute all necessary and desirable patent applications at a reasonable cost and in a timely manner, our business will be adversely affected. Despite our efforts and the efforts of our collaborators to protect our proprietary rights, unauthorized parties may be able to obtain and use information that we regard as proprietary. The mere issuance of a patent does not guarantee that it is valid or enforceable, so even if we obtain patents, they may not be valid or enforceable against third parties.

      Our pending patent applications may not result in issued patents. The patent position of pharmaceutical or biotechnology companies, including ours, is generally uncertain and involves complex legal and factual considerations. The standards that the United States Patent and Trademark Office and its foreign counterparts use to grant patents are not always applied predictably or uniformly and can change. There is also no uniform, worldwide policy regarding the subject matter and scope of claims granted or allowable in pharmaceutical or biotechnology patents. Accordingly, we do not know the degree of future protection for our proprietary rights or the breadth of claims that will be allowed in any patents issued to us or to others.

      We also rely on trade secrets, know-how and technology, which are not protected by patents, to maintain our competitive position. If any trade secret, know-how or other technology not protected by a patent were to be disclosed to or independently developed by a competitor, our business and financial condition could be materially adversely affected.

We license patent rights from third party owners. If such owners do not properly maintain or enforce the patents underlying such licenses, our competitive position and business prospects will be harmed.

      We are a party to a number of licenses that give us rights to third party intellectual property that is necessary or useful for our business. In particular, we have obtained licenses from Isis, Carnegie Institution of Washington, Cancer Research Technology Limited, the Massachusetts Institute of Technology, the Whitehead Institute, Garching Innovation GmbH, representing the Max Planck Gesellschaft zur Förderung der Wissenschaften e.V., referred to as the Max Planck organization, and Cold Spring Harbor Laboratory. We also intend to enter into additional licenses to third party intellectual property in the future.

      Our success will depend in part on the ability of our licensors to obtain, maintain and enforce patent protection for our licensed intellectual property, in particular, those patents to which we have secured exclusive rights. Our licensors may not successfully prosecute the patent applications to which we are licensed. Even if patents issue in respect of these patent applications, our licensors may fail to maintain these patents, may determine not to pursue litigation against other companies that are infringing these patents, or may pursue such litigation less aggressively than we would. Without protection for the intellectual property we license, other companies might be able to offer substantially identical products for sale, which could adversely affect our competitive business position and harm our business prospects.

One of our key patents, the so-called Kreutzer-Limmer patent, is the subject of an opposition proceeding in the European Patent Office, which could result in the invalidation of this patent.

      We believe the so-called Kreutzer-Limmer patent is the only patent granted to date that specifically covers the use of short dsRNAs as therapeutics. A German Utility Model covering RNAi composition was registered in 2003, and a patent covering RNAi compositions and their use was granted by the European Patent Office, or EPO, in 2002 and in South Africa in 2003. Related patent applications are pending in other countries, including the United States. A German Utility Model is a form of patent that is directed only

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to physical matter, such as medicines, and does not cover methods. The maximum period of protection afforded by the German Utility Model ends in 2010. After the grant by the EPO of the Kreutzer-Limmer patents published under publication number EP 1144623B9, several oppositions to the issuance of the European patent were filed with the EPO, a practice that is allowed under the European Patent Convention. Each of the oppositions raises a number of grounds for the invalidation of the patent, including the use of disclaimer practice. The EPO opposition division in charge of the opposition proceedings may agree with one or more of the grounds and could revoke the patent in whole or restrict the scope of the claims. It may be several years before the outcome of the opposition proceeding is decided by the EPO.

      In addition, the Enlarged Board of Appeal at the EPO has just rendered a decision in an unrelated case covering what is known as “disclaimer practice”. With a disclaimer, a patent applicant gives up, or disclaims, part of the originally claimed invention in a patent application in order to overcome prior art and adds a limitation to the claims which may have no basis in the original disclosure. The Enlarged Board determined that disclaimer practice is allowed under the European Patent Convention under a defined set of circumstances. It now has to be determined as part of the opposition proceedings regarding the Kreutzer-Limmer patent whether the use of a disclaimer during the prosecution of this case falls within one of the allowable circumstances. Determination by the EPO opposition division that the use of the disclaimer in this case does not fall under one of the allowed circumstances could result in the invalidation of the Kreutzer-Limmer patent. Even if the EPO opposition division determines that the use of a disclaimer is permissible, the Kreutzer-Limmer patent would remain subject to the other issues raised in the opposition. If the Kreutzer-Limmer patent is invalidated or limited for any reason, other companies will be better able to develop products that compete with ours, which could adversely affect our competitive business position, business prospects and financial condition.

Other companies or organizations may assert patent rights that prevent us from developing and commercializing our products.

      RNA interference is a relatively new scientific field that has generated many different patent applications from organizations and individuals seeking to obtain important patents in the field. These applications claim many different methods, compositions and processes relating to the discovery, development and commercialization of RNAi therapeutics. Because the field is so new, very few of these patent applications have been fully processed by government patent offices around the world, and there is a great deal of uncertainty about which patents will issue, when, to whom, and with what claims. It is likely that there will be significant litigation and other proceedings, such as interference proceedings in various patent offices, relating to patent rights in the RNAi field. Others may attempt to invalidate our intellectual property rights. Even if our rights are not directly challenged, disputes among third parties could lead to the weakening or invalidation of our intellectual property rights.

      In addition, there are many issued and pending patents that claim aspects of oligonucleotide chemistry that we may need to apply to our siRNA drug candidates. There are also many issued patents that claim genes or portions of genes that may be relevant for siRNA drugs we wish to develop.

      Thus, it is possible that one or more organizations will hold patent rights to which we will need a license. If those organizations refuse to grant us a license to such patent rights on reasonable terms, we will not be able to market products or perform research and development or other activities covered by these patents.

If we become involved in patent litigation or other proceedings related to a determination of rights, we could incur substantial costs and expenses, substantial liability for damages or be required to stop our product development and commercialization efforts.

      A third party may sue us for infringing its patent rights. Likewise, we may need to resort to litigation to enforce a patent issued or licensed to us or to determine the scope and validity of third-party proprietary rights. In addition, a third party may claim that we have improperly obtained or used its confidential or proprietary information. Furthermore, in connection with a license agreement, we have agreed to indemnify

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the licensor for costs incurred in connection with litigation relating to intellectual property rights. The cost to us of any litigation or other proceeding relating to intellectual property rights, even if resolved in our favor, could be substantial, and the litigation would divert our management’s efforts. Some of our competitors may be able to sustain the costs of complex patent litigation more effectively than we can because they have substantially greater resources. Uncertainties resulting from the initiation and continuation of any litigation could limit our ability to continue our operations.

      If any parties successfully claim that our creation or use of proprietary technologies infringes upon their intellectual property rights, we might be forced to pay damages, potentially including treble damages, if we are found to have willfully infringed on such parties’ patent rights. In addition to any damages we might have to pay, a court could require us to stop the infringing activity or obtain a license. Any license required under any patent may not be made available on commercially acceptable terms, if at all. In addition, such licenses are likely to be non-exclusive and, therefore, our competitors may have access to the same technology licensed to us. If we fail to obtain a required license and are unable to design around a patent, we may be unable to effectively market some of our technology and products, which could limit our ability to generate revenues or achieve profitability and possibly prevent us from generating revenue sufficient to sustain our operations. Moreover, we expect that a number of our collaborations will provide that royalties payable to us for licenses to our intellectual property may be offset by amounts paid by our collaborators to third parties who have competing or superior intellectual property positions in the relevant fields, which could result in significant reductions in our revenues from products developed through collaborations.

If we fail to comply with our obligations under any licenses or related agreements, we could lose license rights that are necessary for developing and protecting our RNAi technology and any related product candidates that we develop, or we could lose certain exclusive rights to grant sublicenses.

      Our current licenses impose, and any future licenses we enter into are likely to impose, various development, commercialization, funding, royalty, diligence, sublicensing, insurance and other obligations on us. If we breach any of these obligations, the licensor may have the right to terminate the license or render the license non-exclusive, which could result in us being unable to develop, manufacture and sell products that are covered by the licensed technology or enable a competitor to gain access to the licensed technology. In addition, while we cannot currently determine the amount of the royalty obligations we will be required to pay on sales of future products, if any, the amounts may be significant. The amount of our future royalty obligations will depend on the technology and intellectual property we use in products that we successfully develop and commercialize, if any. Therefore, even if we successfully develop and commercialize products, we may be unable to achieve or maintain profitability.

      For two important pending patent applications, owned in part or solely by the Max Planck organization of Germany, our licenses include a condition requiring us to operate a German company comparable to our United States operation until at least December 2007. If we fail to comply with this condition, the owners of the patent applications that are the subject of these licenses would have the right to grant similar licenses to one other company for each pending patent application. We regard these pending patent applications as significant because they relate to important aspects of the structure of siRNA molecules and their use as therapeutics.

      We have an agreement with Isis under which we were granted licenses to over 150 patents and patent applications that we believe will be useful to the development of RNAi therapeutics. If, by January 1, 2008, we or a collaborator have not completed the studies required for an investigational new drug application filing or similar foreign filing for at least one product candidate involving these patent rights, Isis would have the right to grant licenses to third parties for these patents and patent applications, thereby making our rights non-exclusive.

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Confidentiality agreements with employees and others may not adequately prevent disclosure of trade secrets and other proprietary information.

      In order to protect our proprietary technology and processes, we also rely in part on confidentiality agreements with our collaborators, employees, consultants, outside scientific collaborators and sponsored researchers and other advisors. These agreements may not effectively prevent disclosure of confidential information and may not provide an adequate remedy in the event of unauthorized disclosure of confidential information. In addition, others may independently discover trade secrets and proprietary information, and in such cases we could not assert any trade secret rights against such party. Costly and time-consuming litigation could be necessary to enforce and determine the scope of our proprietary rights, and failure to obtain or maintain trade secret protection could adversely affect our competitive business position.

Risks Related to Our Common Stock

Purchasers in this offering will suffer immediate dilution.

      If you purchase common stock in this offering, the value of your shares based on our actual book value will immediately be less than the offering price you paid. This reduction in the value of your equity is known as dilution. Based upon the net tangible book value of the common stock at March 31, 2004, your shares will be worth less per share than the price you paid in the offering. If the options and warrants we previously granted are exercised, additional dilution will occur. As of March 31, 2004, options to purchase 1,942,908 shares of common stock at a weighted average exercise price of $0.61 per share were outstanding, and warrants to purchase 65,787 shares of common stock at a weighted average exercise price of $8.55 per share were outstanding. In addition, if we raise additional funding by issuing additional equity securities, the newly-issued shares will further dilute your percentage ownership of our shares and may also reduce the value of your investment.

Our stock price will fluctuate after this offering, which may cause your investment in our stock to suffer a decline in value.

      After this offering, an active trading market in our stock might not develop or continue. If you purchase shares of our common stock in the offering, you will pay a price that was not established in a competitive market. Rather, you will pay a price that we negotiated with the representatives of the underwriters based upon an assessment of the valuation of our stock. The public market may not agree with or accept this valuation, in which case you may not be able to sell your shares at or above the initial offering price.

      In addition, the market price of our common stock may fluctuate significantly in response to factors that are beyond our control. The stock market in general has recently experienced extreme price and volume fluctuations. The market prices of securities of pharmaceutical and biotechnology companies have been extremely volatile, and have experienced fluctuations that often have been unrelated or disproportionate to the operating performance of these companies. These broad market fluctuations could result in extreme fluctuations in the price of our common stock, which could cause a decline in the value of your investment.

We may incur significant costs from class action litigation due to our expected stock volatility.

      Our stock price may fluctuate for many reasons, including as a result of public announcements regarding the progress of our development efforts, the addition or departure of our key personnel, variations in our quarterly operating results and changes in market valuations of pharmaceutical and biotechnology companies. Recently, when the market price of a stock has been volatile as our stock price may be, holders of that stock have occasionally brought securities class action litigation against the company that issued the stock. If any of our stockholders were to bring a lawsuit of this type against us, even if the lawsuit is without merit, we could incur substantial costs defending the lawsuit. The lawsuit could also divert the time and attention of our management.

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A significant portion of our total outstanding shares are restricted from immediate resale but may be sold into the market in the near future. If there are substantial sales of our common stock, the price of our common stock could decline.

      The price of our common stock could decline if there are substantial sales of our common stock and if there is a large number of shares of our common stock available for sale. After this offering, we will have outstanding 19,283,309 shares of common stock based on the number of shares outstanding as of March 31, 2004. This includes the 5,000,000 shares that we are selling in this offering, which may be resold in the public market immediately. The remaining 14,283,309 shares, or 74.1% of our outstanding shares after this offering, are currently restricted as a result of securities laws or lock-up agreements but will be able to be sold in the near future as set forth below.

     
Number of shares and % of total outstanding Date available for sale into public market


79,943 shares, or 0.4%
  Beginning 90 days after the completion of this offering, depending on the requirements of the federal securities laws.
13,326,173 shares, or 69.1%
  180 days after the date of this prospectus due to lock-up agreements between the holders of these shares and the underwriters. However, the underwriters can waive the provisions of these lock-up agreements and allow these stockholders to sell their shares at any time.
877,193 shares, or 4.6%
  Beginning 181 days after the completion of this offering, depending on the requirements of the federal securities laws.

      After this offering, the holders of an aggregate of 11,964,889 shares of common stock as of March 31, 2004, will have rights, subject to some conditions, to require us to file registration statements covering their shares or to include their shares in registration statements that we may file for ourselves or other stockholders. The holders of warrants to purchase an aggregate of 65,787 shares of our common stock will also be entitled to include such shares in registration statements that we may file in the future. We also intend to register all shares of common stock that we may issue under our employee benefit plans. Once we register these shares, they can be freely sold in the public market upon issuance, subject to the lock-up agreements described in “Underwriting.” For additional information, see “Shares Eligible for Future Sale”.

      Due to these factors, sales of a substantial number of shares of our common stock in the public market could occur at any time. These sales, or the perception in the market that the holders of a large number of shares intend to sell shares, could reduce the market price of our common stock.

Insiders will continue to have substantial control over Alnylam after this offering and could delay or prevent a change in corporate control.

      After this offering, our directors, executive officers and principal stockholders, together with their affiliates, will beneficially own, in the aggregate, approximately 56% of our outstanding common stock. As a result, these stockholders, if acting together, may have the ability to determine the outcome of matters submitted to our stockholders for approval, including the election of directors and any merger, consolidation or sale of all or substantially all of our assets. In addition, these persons, acting together, may have the ability to control the management and affairs of our company. Accordingly, this concentration of ownership may harm the market price of our common stock by:

  •  delaying, deferring or preventing a change in control of our company;
 
  •  impeding a merger, consolidation, takeover or other business combination involving our company; or
 
  •  discouraging a potential acquirer from making a tender offer or otherwise attempting to obtain control of our company.

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We have broad discretion in the use of the net proceeds from this offering and may not use them effectively.

      We cannot specify with certainty the particular uses of the net proceeds that we will receive from this offering. Our management will have broad discretion in the application of the net proceeds, including for any of the purposes described in the “Use of Proceeds” section of this prospectus. Our stockholders may not agree with the manner in which our management chooses to allocate and spend the net proceeds. The failure by our management to apply these funds effectively could have a material adverse effect on our business. Pending their use, we may invest the net proceeds from this offering in a manner that does not produce income or that loses value.

Anti-takeover provisions in our charter documents and under Delaware law could make an acquisition of us, which may be beneficial to our stockholders, more difficult and may prevent attempts by our stockholders to replace or remove our current management.

      Provisions in our certificate of incorporation and our bylaws that will become effective upon the completion of this offering may delay or prevent an acquisition of us or a change in our management. In addition, these provisions may frustrate or prevent any attempts by our stockholders to replace or remove our current management by making it more difficult for stockholders to replace members of our board of directors. Because our board of directors is responsible for appointing the members of our management team, these provisions could in turn affect any attempt by our stockholders to replace current members of our management team. These provisions include:

  •  a classified board of directors;
 
  •  a prohibition on actions by our stockholders by written consent;
 
  •  the ability of our board of directors to issue preferred stock without stockholder approval, which could be used to institute a “poison pill” that would work to dilute the stock ownership of a potential hostile acquirer, effectively preventing acquisitions that have not been approved by our board of directors;
 
  •  limitations on the removal of directors; and
 
  •  advance notice requirements for election to our board of directors and for proposing matters that can be acted upon at stockholder meetings.

Moreover, because we are incorporated in Delaware, we are governed by the provisions of Section 203 of the Delaware General Corporation Law, which prohibits a person who owns in excess of 15% of our outstanding voting stock from merging or combining with us for a period of three years after the date of the transaction in which the person acquired in excess of 15% of our outstanding voting stock, unless the merger or combination is approved in a prescribed manner. These provisions would apply even if the proposed merger or acquisition could be considered beneficial by some stockholders.

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FORWARD-LOOKING STATEMENTS

      This prospectus including the sections entitled “Summary,” “Risk Factors,” “Management’s Discussion and Analysis of Financial Condition and Results of Operations,” and “Business,” contains forward-looking statements. We may, in some cases, use words such as “project,” “believe,” “anticipate,” “plan,” “expect,” “estimate,” “intend,” “should,” “would,” “could,” “potentially,” “will,” or “may,” or other words that convey uncertainty of future events or outcomes to identify these forward-looking statements. Forward-looking statements in this prospectus may include statements about:

  •  our research and development activities, including development of our product engine, and projected expenditures;
 
  •  the advantages of our technology and product candidates as compared to others;
 
  •  our ability to obtain and maintain collaborators for certain of our development programs and the terms of these arrangements;
 
  •  our ability to successfully complete preclinical testing;
 
  •  our ability to commence, and the timing of, any clinical trials, including for an AMD product candidate;
 
  •  the completion and success of any clinical trials that we commence;
 
  •  the receipt of regulatory approvals by our collaborators or us;
 
  •  our ability to maintain and establish intellectual property rights in our product candidates;
 
  •  our ability to obtain licenses relating to any necessary third party intellectual property;
 
  •  the outcome of any future litigation;
 
  •  our ability to retain and hire necessary employees and appropriately staff our development programs;
 
  •  our spending of the proceeds from this offering;
 
  •  our cash needs;
 
  •  implementation of our corporate strategy; and
 
  •  our financial performance.

      There are a number of important factors that could cause actual results to differ materially from the results anticipated by these forward-looking statements. These important factors include those that we discuss in this prospectus under the caption “Risk Factors.” You should read these factors and the other cautionary statements made in this prospectus as being applicable to all related forward-looking statements wherever they appear in this prospectus. If one or more of these factors materialize, or if any underlying assumptions prove incorrect, our actual results, performance or achievements may vary materially from any future results, performance or achievements expressed or implied by these forward-looking statements. The forward-looking statements contained in this prospectus are excluded from the safe harbor protection provided by the Private Securities Litigation Reform Act of 1995 and Section 27A of the Securities Act of 1933. We undertake no obligation to publicly update any forward-looking statements, whether as a result of new information, future events or otherwise, except as required by law.

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USE OF PROCEEDS

      We estimate that our net proceeds from the sale of 5,000,000 shares of common stock in this offering will be approximately $49.3 million, assuming an initial public offering price of $11.00 per share, the mid-point of the estimated price range shown on the cover of this prospectus, and after deducting the estimated underwriting discounts and commissions and estimated offering expenses payable by us. If the underwriters exercise their over-allotment option, we estimate that we will receive additional net proceeds of approximately $7.7 million. We expect to use the net proceeds to fund:

  •  research and development activities, including development of our RNAi capabilities, selection of product candidates and preclinical and clinical development of our product candidates;
 
  •  acquisition, licensing and protection of intellectual property rights; and
 
  •  working capital, capital expenditures and other general corporate purposes.

      The amounts and timing of our actual expenditures will depend upon numerous factors, including the status of our research and development efforts, the timing and success of preclinical testing, the timing and success of any clinical trials we may commence in the future, the timing of regulatory submissions, the amount of proceeds actually raised in this offering, the amount of cash generated by our operations, the amount of competition we face and how successful we are with obtaining any required licenses and entering into collaboration arrangements. We may also use a portion of the proceeds for the acquisition of, or investment in, companies, technologies, products or assets that complement our business. However, we have no present understandings, commitments or agreements to enter into any potential acquisitions or investments. We currently estimate that of the net proceeds from this offering we will spend between $15 and $20 million on our systemic RNAi research and development activities, between $10 and $15 million on our AMD and other direct RNAi programs, and the remainder on the acquisition, licensing and protection of intellectual property rights and on working capital, capital expenditures and other general corporate purposes. Our management will have broad discretion to allocate the net proceeds from this offering. We do not expect the net proceeds from this offering to be sufficient to fund the completion of the development of any product candidate and we expect to need to raise additional funds prior to being able to market any product.

      Pending utilization of the net proceeds as described above, we intend to invest the net proceeds of the offering in short-term investment grade and U.S. government securities.

DIVIDEND POLICY

      We have never paid or declared any cash dividends on our common stock. We currently intend to retain earnings, if any, to finance the growth and development of our business and we do not expect to pay any cash dividends on our common stock in the foreseeable future. Payment of future dividends, if any, will be at the discretion of our board of directors and will depend on our financial condition, results of operations, capital requirements, restrictions contained in current or future financing instruments and other factors our board of directors deems relevant.

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CAPITALIZATION

      The following table sets forth our cash and cash equivalents, note payable and capitalization as of March 31, 2004:

  •  on an actual basis;
 
  •  on an as adjusted basis to (1) reflect the conversion of all of our shares of convertible preferred stock outstanding as of March 31, 2004 into an aggregate of 11,964,889 shares of common stock upon the closing of this offering and (2) give effect to the issuance and sale of 5,000,000 shares of common stock in this offering at an assumed initial public offering price of $11.00 per share, the mid-point of the estimated price range shown on the cover page of this prospectus, after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us.

      You should read the information below with our consolidated financial statements and the related notes and “Management’s Discussion and Analysis of Financial Commission and Results of Operations” included elsewhere in this prospectus.

                     
As of March 31, 2004

Actual As Adjusted


($ in thousands, except
per share data)
Cash and cash equivalents
  $ 21,612     $ 70,862  
     
     
 
Note payable
  $ 1,879     $ 1,879  
     
     
 
Redeemable convertible preferred stock, $0.0001 par value; 22,943,580 authorized and 22,733,347 shares issued and outstanding, actual; and no shares authorized, issued or outstanding, as adjusted
    66,875        
     
     
 
Stockholders’ equity (deficit):
               
 
Common stock, $0.0001 par value, 32,000,000 shares authorized, 2,401,314 shares issued and 2,318,420 shares outstanding, actual; and, $0.01 par value, 125,000,000 shares authorized and 19,283,309 shares issued and outstanding, as adjusted
    1       193  
 
Additional paid-in capital
    12,524       128,457  
 
Deferred compensation
    (7,741 )     (7,741 )
 
Accumulated other comprehensive income
    69       69  
 
Deficit accumulated in the development stage
    (43,933 )     (43,933 )
     
     
 
   
Total stockholders’ equity (deficit)
    (39,080 )     77,045  
     
     
 
   
Total capitalization
  $ 27,795     $ 77,045  
     
     
 

      The above table excludes:

  •  1,942,908 shares of common stock issuable upon exercise of options outstanding as of March 31, 2004 with a weighted average exercise price of $0.61 per share;
 
  •  65,787 shares of common stock issuable upon exercise of outstanding warrants as of March 31, 2004 with a weighted average exercise price of $8.55 per share; and
 
  •  4,151,643 shares of common stock reserved for issuance under our stock option plans and stock purchase plan.

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DILUTION

      The net tangible book value of our common stock as of March 31, 2004 was approximately $(43.1) million, or $(18.58) per share. Net tangible book value per share represents our total tangible assets less the sum of the total liabilities and the liquidation value of our convertible preferred stock and divided by the number of shares of common stock outstanding. Net tangible book value dilution per share to new investors is the difference between the amount per share paid by purchasers of common stock in this offering and the pro forma as adjusted net tangible book value per share immediately following the offering.

      After giving effect to the conversion of all outstanding shares of convertible preferred stock into an aggregate of 11,964,889 shares of common stock upon the closing of this offering, and after giving effect to the issuance and sale of the 5,000,000 shares of common stock in this offering at an assumed offering price of $11.00 per share and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us, our pro forma as adjusted net tangible book value as of March 31, 2004 would have been $73.0 million, or $3.79 per share. This represents an immediate increase in pro forma net tangible book value to existing stockholders of $2.12 per share. The initial public offering price per share will significantly exceed the net tangible book value per share. Accordingly, new investors who purchase common stock in this offering will suffer an immediate dilution of their investment of $7.21 per share. The following table illustrates this per share dilution:

                   
Assumed initial public offering price per share
          $ 11.00  
 
Net tangible book value per share as of March 31, 2004
  $ (18.58 )        
 
Pro forma increase in net tangible book value per share attributable to conversion of convertible preferred stock
    20.25          
 
Increase in net tangible book value per share attributable to this offering
    2.12          
     
         
Pro forma as adjusted net tangible book value per share after this offering
            3.79  
             
 
Dilution of net tangible book value per share to new investors
          $ 7.21  
             
 

      If the underwriters exercise their over-allotment option in full, the pro forma net tangible book value per share after the offering would be $4.03 per share, the increase in net tangible book value per share to existing stockholders would be $2.36 per share and the dilution to new investors would be $6.97 per share.

      The following table summarizes, on a pro forma as adjusted basis as of March 31, 2004, giving effect to the conversion of all shares of convertible preferred stock outstanding into shares of common stock, the differences between the number of shares of common stock purchased from us, the total consideration paid to us and the average price per share paid by existing stockholders and by new investors. The calculation below is based on an assumed initial public offering price of $11.00 per share, before deduction of estimated underwriting discounts and commissions and estimated offering expenses payable by us:

                                           
Shares Issued Total Consideration


Average Price
Number % Amount % Per Share





Existing stockholders
    14,283,309       74 %   $ 64,005,000       54 %   $ 4.48  
New investors
    5,000,000       26 %   $ 55,000,000       46 %   $ 11.00  
     
     
     
     
     
 
 
Total
    19,283,309       100 %   $ 119,005,000       100 %   $ 6.17  
     
     
     
     
     
 

      The tables above assume no exercise of stock options or warrants outstanding as of March 31, 2004. At March 31, 2004, there were 1,942,908 shares of common stock issuable upon exercise of outstanding stock options at a weighted average exercise price of $0.61 per share, and 65,787 shares of common stock issuable upon exercise of outstanding warrants at a weighted average exercise price of $8.55 per share. To the extent that outstanding options or warrants are exercised in the future, there will be further dilution to new investors. To the extent all of such outstanding options and warrants had been exercised as of March 31, 2004, net tangible book value per share after this offering would be $3.51 and total dilution per share to new investors would be $7.49.

      If the underwriters exercise their over-allotment option in full, the number of shares held by new investors will increase to 5,750,000 shares, or 29% of the total number of shares of common stock outstanding after this offering.

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SELECTED CONDENSED CONSOLIDATED FINANCIAL DATA

     The following table presents our historical financial data. You should read carefully the financial statements included in this prospectus, including the notes to the financial statements and “Management’s Discussion and Analysis of Financial Condition and Results of Operations.” The selected financial data in this section are not intended to replace the financial statements.

     We derived the statement of operations data for the period from June 14, 2002 through December 31, 2002 and the year ended December 31, 2003 and the balance sheet data as of December 31, 2002 and 2003 from our consolidated financial statements, which have been audited by PricewaterhouseCoopers LLP, independent accountants, and are included elsewhere in this prospectus. We derived the statement of operations data for the three months ended March 31, 2003 and 2004 and the balance sheet data as of March 31, 2004 from our unaudited consolidated financial statements, which are included elsewhere in this prospectus. Historical results are not necessarily indicative of future results. See the notes to the financial statements for an explanation of the method used to determine the number of shares used in computing basic and diluted and pro forma basic and diluted net loss per common share.

     Pro forma basic and diluted net loss per common share have been calculated assuming the conversion of all outstanding shares of convertible preferred stock into shares of common stock. On July 31, 2003, we acquired all of the outstanding voting shares of Alnylam Europe for $1.5 million in cash and 815,376 shares of our common stock, and assumed $7.1 million of debt. In connection with the acquisition, we allocated $4.6 million of the purchase price to purchased in-process research and development, which we expensed immediately. The results of Alnylam Europe have been included in our consolidated results from the date of acquisition.

                                       
Three Months Ended
Period from Inception Year Ended March 31,
(June 14, 2002) through December 31,
December 31, 2002 2003 2003 2004




($ in thousands, except per share data)
Consolidated Statements of Operations Data:
                               
Revenue from research collaborators
  $     $ 176     $     $ 134  
     
     
     
     
 
Costs and expenses
                               
  Research and development(1)     3,342       13,097       1,266       10,435  
  General and administrative(1)     880       7,527       908       3,031  
  Purchased in-process research and development           4,609              
     
     
     
     
 
Total operating costs and expenses
    4,222       25,233       2,174       13,466  
     
     
     
     
 
Loss from operations
    (4,222 )     (25,057 )     (2,174 )     (13,332 )
Other income (expense), net
    86       24       23       (250 )
     
     
     
     
 
Net loss
    (4,136 )     (25,033 )     (2,151 )     (13,582 )
Accretion of redeemable convertible preferred stock
    (748 )     (2,906 )     (435 )     (1,962 )
     
     
     
     
 
Net loss attributable to common stockholders
    (4,884 )     (27,939 )     (2,586 )     (15,544 )
     
     
     
     
 
Net loss per common share (basic and diluted)
  $ (14.74 )   $ (29.64 )   $ (5.56 )   $ (9.39 )
     
     
     
     
 
  Weighted average shares used to compute basic and diluted net loss per common share     331,341       942,665       465,349       1,655,168  
Pro forma net loss per common share (basic and diluted)
          $ (3.17 )           $ (1.11 )
             
             
 
  Shares used to compute basic and diluted pro forma net loss per common share             7,977,685               12,935,145  

                               
(1) Noncash stock-based compensation expense included in these amounts are as follows:                                
    Research and development   $ 172     $ 2,832     $ 500     $ 1,724  
    General and administrative           623       19       507  
     
     
     
     
 
      Total noncash stock-based compensation expense   $ 172     $ 3,455     $ 519     $ 2,231  
     
     
     
     
 
                                 
As of December 31, As of

March 31,
2002 2003 2004



($ in thousands)
Consolidated Balance Sheet Data:
                               
Cash and cash equivalents   $ 15,477     $ 23,193     $ 21,612  
Working capital     12,846       20,345       14,393  
Total assets     16,111       35,183       39,339  
Note payable           1,859       1,879  
Redeemable convertible preferred stock     18,084       55,189       66,875  
Total stockholders’ equity (deficit)     (4,646 )     (26,707 )     (39,080 )

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MANAGEMENT’S DISCUSSION AND ANALYSIS OF

FINANCIAL CONDITION AND RESULTS OF OPERATIONS

      The following discussion and analysis of financial condition and results of operations should be read together with “Selected Condensed Consolidated Financial Data,” and our consolidated financial statements and accompanying notes appearing elsewhere in this prospectus. This discussion contains forward-looking statements, based on current expectations and related to future events and our future financial performance, that involve risks and uncertainties. Our actual results may differ materially from those anticipated in these forward-looking statements as a result of many important factors, including those set forth under “Risk Factors” and elsewhere in this prospectus. See “Forward-Looking Statements.”

Overview

      We are a biopharmaceutical company that is seeking to develop and commercialize new drugs that work through a recently discovered system in cells known as RNA interference, or RNAi. We believe that RNAi therapeutics have the potential to become a major class of drugs with applications in a wide range of therapeutic areas. We have initiated programs to develop RNAi therapeutics that will be administered directly to diseased parts of the body. We are also working to extend our capabilities by investing in RNAi therapeutics that will be administered systemically in order to treat a broad range of diseases. To realize the potential of RNAi therapeutics, we are developing capabilities that we can apply to any specific small interfering RNA, or siRNA, in a systematic way to endow it with drug-like properties. We use the term product engine to describe these capabilities because we believe they will enable us to develop many products across a variety of therapeutic areas. We expect that our product engine will enable us to produce RNAi therapeutic candidates that are potent against and specific for a particular target, appropriately stable and able to penetrate cells of target tissues.

      We commenced operations in June 2002. To date, our revenue has been derived primarily from our strategic alliance with Merck. We received a $2.0 million license fee from Merck in 2003, almost all of which has been deferred and is being recognized as revenue over six years. We expect our revenues to continue to be derived primarily from strategic alliances. Since our inception, we have generated significant losses. As of March 31, 2004, we had an accumulated deficit of $43.9 million. We have funded our operations to date primarily through proceeds of $54.9 million from the sale of equity securities to investors. We are a development stage company and have yet to submit any drug applications to any regulatory authority. We have focused our efforts since inception primarily on business planning, research and development, acquiring intellectual property rights, recruiting management and technical staff, and raising capital. We are unable to predict when, if ever, we will be able to commence sales of any product. We have not achieved profitability on a quarterly or annual basis and we expect to incur significant additional losses over the next several years. We expect our net losses to increase primarily due to research and development activities relating to our collaborations, drug development programs and other general corporate activities. We anticipate that our operating results will fluctuate for the foreseeable future. Therefore, period-to-period comparisons should not be relied upon as predictive of the results in future periods. Our sources of potential funding for the next several years are expected to include proceeds from this offering, the sale of equity, license and other fees, funded research and development payments, and milestone payments under existing and future collaborative arrangements.

      In July 2003, we acquired Ribopharma AG, now called Alnylam Europe, AG, a RNAi company based in Kulmbach, Germany. To effect the acquisition, we paid $1.5 million in cash and transaction costs of $0.4 million and issued common shares with a fair value of $1.9 million. In addition, we assumed $7.1 million in debt of which $3.0 million was subsequently paid in cash and $4.1 million was settled through the issuance of our Series B redeemable convertible preferred stock. As a result of the acquisition, we expensed $4.6 million of purchased in-process research and development and allocated $5.8 million to long lived assets representing the value ascribed to the Alnylam Europe work force, core technology and fixed assets acquired in the transaction. The results of Alnylam Europe are included in our consolidated results from the date of acquisition.

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Research and Development

      Since our inception, we have focused on drug discovery and development programs. Research and development expenses represented approximately 79% of our total operating expenses for the period from June 14, 2002 through December 31, 2002, 52% of our total operating expenses for the year ended December 31, 2003, and 77% of our total operating expenses for the three months ended March 31, 2004. We have not tracked our historical research and development costs or our personnel and personnel-related costs on a project-by-project basis, since the majority of our efforts have been focused on the development of capabilities associated with our product engine rather than on specific projects. Major components of our research and development expense for 2003 include payroll and related expenses of $3.0 million, stock-based compensation expenses of $2.8 million, laboratory costs of $2.1 million, costs to license technology of $1.7 million and costs associated with our intellectual property of $1.4 million. Major components of our research and development expense for the three months ended March 31, 2004 include license fees of $5.0 million, payroll and related expenses of $1.5 million and stock-based compensation expenses of $1.7 million.

      We have initiated two programs to identify specific siRNAs for potential further development as Direct RNAi drug candidates and we expect to initiate additional programs as the capabilities of our product engine evolve. Our current programs are focused on AMD and PD. We are currently evaluating several RNAi therapeutics in animal models and expect to begin a clinical trial for an AMD product candidate in 2005. We recently entered into a collaboration with the Mayo Foundation for Medical Education and Research and the Mayo Clinic Jacksonville to explore the potential of a PD treatment by initiating testing in animal models. We plan to begin animal model testing by the end of 2004.

      There is a risk that any drug discovery and development program may not produce revenue because of the risks inherent in drug discovery and development. Moreover, there are uncertainties specific to any new field of drug discovery, including RNAi. The successful development of any product candidate we develop is highly uncertain. Due to the numerous risks associated with developing drugs, we cannot reasonably estimate or know the nature, timing and estimated costs of the efforts necessary to complete the development of, or the period in which material net cash inflows are expected to commence from, any potential product candidate. These risks include the uncertainty of:

  •  our ability to progress any product candidates into preclinical and clinical trials;
 
  •  the scope, rate and progress of our preclinical trials and other research and development activities;
 
  •  the scope, rate of progress and cost of any clinical trials we commence;
 
  •  clinical trial results;
 
  •  the cost of filing, prosecuting, defending and enforcing any patent claims and other intellectual property rights;
 
  •  the terms and timing of any collaborative, licensing and other arrangements that we may establish;
 
  •  the cost and timing of regulatory approvals;
 
  •  the cost and timing of establishing sales, marketing and distribution capabilities;
 
  •  the cost of establishing clinical and commercial supplies of any products that we may develop; and
 
  •  the effect of competing technological and market developments.

      Any failure to complete any stage of the development of any potential products in a timely manner could have a material adverse effect on our operations, financial position and liquidity. A discussion of the risks and uncertainties associated with completing our projects on schedule, or at all, and the potential consequences of failing to do so, are set forth in the “Risk Factors” section of this prospectus.

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Critical Accounting Policies and Estimates

      While our significant accounting policies are more fully described in the notes to our consolidated financial statements included in this prospectus, we believe the following accounting policies to be the most critical in understanding the judgments and estimates we use in preparing our consolidated financial statements:

Use of Estimates

      Our discussion and analysis of our financial condition and results of operations is based on our consolidated financial statements, which have been prepared in accordance with accounting principles generally accepted in the United States. The preparation of our consolidated financial statements requires us to make estimates and judgments that affect the reported amounts of assets, liabilities, revenues and expenses. On an ongoing basis, we evaluate our estimates and judgments, including those related to revenue recognition, accrued expenses and the fair value of our common and preferred stock, particularly as it relates to stock-based compensation. We base our estimates on historical experience and on various other assumptions that we believe to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities that are not readily apparent from other sources. Actual results may differ from these estimates under different assumptions or conditions and could have a material impact on our reported results.

      With respect to our estimates involved in the determination of the fair value of our common stock, during 2003 the board of directors evaluated several events that provided indicators of the fair value of our common stock including (1) a valuation that was performed in connection with the acquisition of Alnylam Europe in July 2003, (2) the fair value of our Series B and Series C convertible preferred stock that was issued in July, September and October 2003, and its relation to the value of our common stock, and (3) the impact of our proposed offering of common stock. These factors indicated that the options granted to employees during 2003 had a deemed fair value that was higher than the exercise price. This caused us to record deferred compensation of $3.3 million during 2003 and related compensation expense of $0.7 million in 2003. The deferred compensation will be recorded as an expense over the vesting period of the underlying stock options in accordance with the method prescribed by the Financial Accounting Standards Board, or FASB, Interpretation No. 28, Accounting for Stock Appreciation Rights and Other Variable Stock Options and Award Plans , or FIN 28, as this method appropriately matches the compensation expense related to the services performed by the option holder with the period over which each of the options vest from the date of grant. We expect to record amortization of this deferred compensation of $1.4 million in 2004, $0.7 million in 2005, $0.4 million in 2006 and $0.1 million in 2007, subject to employee terminations.

      In connection with stock options granted to nonemployees for services during the year ended December 31, 2003 and our determination of the fair value of our common stock, we have recorded aggregate deferred compensation of approximately $1.2 million, which represents the fair value of nonemployee grants. The deferred compensation will be recorded as an expense over the vesting period of the underlying stock options in accordance with the method prescribed by FIN 28, as this method appropriately matches the compensation expense related to the services performed by the option holder with the period over which each of the options vest from the date of grant. At the end of each financial reporting period prior to vesting, the value of these options, as calculated using the Black-Scholes option pricing model, will be remeasured using the then-current fair value of our common stock. At that point, deferred compensation and the noncash compensation recognized during that period will be adjusted accordingly. Stock-based compensation expense related to these nonemployee options for 2003 was $0.5 million. Since the fair value of the common stock to nonemployees is subject to change in the future, the compensation expense recognized during the year ended December 31, 2003 and prior years may not be indicative of future compensation charges.

      We have also recorded cumulative deferred compensation of $3.8 million related to restricted stock awards that were issued to nonemployees in 2002. Shares remaining unvested or subject to forfeiture for nonemployees still providing services are subject to a mark-to-market adjustment during each reporting period

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prior to vesting in full. The deferred compensation will be recorded as an expense over the vesting period of the underlying restricted stock in accordance with the method prescribed by FIN 28, as this method appropriately matches the compensation expense related to the services performed by the option holder with the period over which each of the options vest from the date of grant. We recorded noncash stock-based compensation expense of $0.2 million during the period from June 14, 2002 through December 31, 2002 and $2.2 million during the year ended December 31, 2003, related to the amortization of the deferred compensation. The deferred compensation balance at December 31, 2003 related to these awards was $1.2 million. Since the fair value of the common stock to nonemployees is subject to change in the future, the compensation expense recognized during the year ended December 31, 2003 and prior years may not be indicative of future compensation charges.

Acquired Technology

      We have licensed technology that we expect to utilize in our research and development activities. The terms of the licenses may provide for up-front payments, annual maintenance payments, milestone payments based upon the achievement of specified events and royalties based on product sales. We account for the costs associated with obtaining licenses in accordance with FASB Statement No. 2, Accounting for Research and Development Costs . Under this standard, we determine whether the technology we are licensing relates to a particular research and development project with no alternative use. If it is determined that there are no alternative uses, the amount is expensed as incurred. Alternatively, the costs are capitalized and amortized over their estimated useful life. To date, we have expensed $8.2 million of acquired technology, including $4.6 million of purchased in-process research and development that is believed to have no alternative uses. We have capitalized $3.6 million of core technology, with a 10-year estimated useful life, which was acquired in 2003 as part of the Alnylam Europe acquisition.

Long-lived Assets

      We generally depreciate property and equipment using the straight-line method over the asset’s estimated economic life, which ranges from two years to eight years. Determining the economic lives of property and equipment requires us to make significant judgments that can materially impact our operating results. As of December 31, 2003, there was approximately $3.9 million of intangible assets on our consolidated balance sheet, including $3.6 million of core technology and $0.4 million related to the Alnylam Europe workforce. We amortize acquired intangible assets using the straight-line method over their estimated economic lives, which range from four years to 10 years. Determining the economic lives of acquired intangible assets requires us to make significant judgment and estimates, and can materially impact our operating results. If our estimates require adjustment, it could have a material impact on our reported results.

      Our policy regarding long-lived assets is to evaluate the recoverability or usefulness of these assets when the facts and circumstances suggest that these assets may be impaired. This analysis relies on a number of factors, including changes in strategic direction, business plans, regulatory developments, economic and budget projections, technological improvements and operating results. The test of recoverability or usefulness is a comparison of the asset value to the undiscounted cash flow of its expected cumulative net operating cash flow over the asset’s remaining useful life. Any write-downs would be treated as permanent reductions in the carrying amount of the asset and an operating loss would be recognized. To date, we have had recurring operating losses and the recoverability of our long-lived assets is contingent upon executing our business plan that includes obtaining significant revenue from research collaborations. If we are unable to execute our business plan, we may be required to write down the value of our long-lived assets in future periods.

      In accounting for the acquisition of Alnylam Europe, we allocated the purchase price to the fair value of the acquired tangible and intangible assets, including purchased in-process research and development, which requires us to make several significant judgments and estimates. In preparing the allocation, we used a discounted cash flow model to value the intangibles of Alnylam Europe, which requires us to make assumptions and estimates about, among other things: (1) the time and investment that will be required to develop the projects and related technologies; (2) the amount of revenues, royalties and milestone payments that will be derived from the projects; and (3) the appropriate discount rates to be used in the analysis. Use

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of different estimates and judgments could yield materially different results in our analysis, and could result in materially different asset values and purchased in-process research and development charges.

Revenue Recognition

      We recognize revenue in accordance with the Securities and Exchange Commission’s Staff Accounting Bulletin No. 104, Revenue Recognition in Financial Statements . We have entered into a collaboration agreement with Merck. Revenue from this collaboration agreement includes nonrefundable license fees, milestones and royalties. When evaluating multiple element arrangements, we consider whether the components of the arrangement represents separate units of accounting as defined in Emerging Issues Task Force Issue No. 00-21, Revenue Arrangements with Multiple Deliverables , or EITF 00-21. Application of these standards requires subjective determinations and requires management to make judgments about value of the individual elements and whether it is separable from the other aspects of the contractual relationship. To date, we have determined that our upfront non-refundable license fees cannot be separated from our ongoing collaborative activities, and accordingly, do not treat them as a separate element. Nonrefundable license fees are recognized as revenue as we perform under the collaboration agreement. Where our level of effort is relatively constant over the performance period, we recognize total fixed or determined contract revenues on a straight-line basis over the development period set forth in the contract.

      We recognize milestone payments as revenue upon achievement of the milestone only if (1) it represents a separate unit of accounting as defined in EITF 00-21; (2) the milestone payments are nonrefundable; (3) substantive effort is involved in achieving the milestone; and (4) the amount of the milestone is reasonable in relation to the effort expended or the risk associated with achievement of the milestone. If any of these conditions are not met, we defer the milestone payments and recognize them as revenue over the term of the contract as we complete our performance obligations. To date, we have not recognized revenue from any milestone payments.

Results of Operations

 
Three Months Ended March 31, 2004 Compared to the Three Months Ended March 31, 2003
 
Revenue

      We do not currently sell any products. To date, our revenue has been derived primarily from our strategic alliance with Merck. We received a $2.0 million license fee from Merck in 2003, almost all of which has been deferred and is being recognized as revenue over six years, the estimated period of performance under the collaboration agreement. We did not recognize any revenue in the three months ended March 31, 2003. For the foreseeable future, we expect our revenues to continue to be derived primarily from strategic alliances. In addition, we have recently established license programs for research reagents and services, which are expected to provide revenues from license fees and from royalties on sales.

Research and Development Expenses

      We expense research and development costs as incurred. Research and development expenses were $10.4 million for the three months ended March 31, 2004, an increase of $9.1 million from $1.3 million for the three months ended March 31, 2003. This increase resulted primarily from the $5.0 million license fee incurred under the Isis agreement, an increase in noncash stock-based compensation of $1.2 million, research and development expenses of $1.2 million incurred by Alnylam Europe, which we acquired in July 2003, for which there are no comparable amounts in the prior period, and the increase in payroll and related expenses of our research and development team of $1.1 million. The remainder of the increase is primarily a result of an expansion of our technology development program during 2003. We expect to continue to devote substantial resources to research and development.

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General and Administrative Expenses

      General and administrative expenses consist primarily of salaries and related expenses, professional fees, and general corporate activities. General and administrative expenses were $3.0 million for the three months ended March 31, 2004, an increase of $2.1 million from $0.9 million for the three months ended March 31, 2003. This increase resulted from an increase of $0.5 million in noncash stock-based compensation, the addition of Alnylam Europe of $0.3 million, for which there are no comparable amounts in the prior period, and an increase in payroll and related expenses of $0.6 million resulting from the hiring of additional employees and members of the management team. The remainder of the increase resulted primarily from the building of our infrastructure and various costs associated with the growth and related increased business activities. We anticipate that these expenses will continue to increase as a result of the expected expansion of our operations, facilities and other activities associated with the planned expansion of our business, together with additional costs associated with operating as a public company.

Interest Income and Expense

      There was no significant interest income for the three months ended March 31, 2003 or 2004. Interest expense was $0.2 million for the three months ended March 31, 2004 and $0 for the three months ended March 31, 2003. The interest expense for the three months ended March 31, 2004 is related to our borrowings for equipment purchases. We expect that our interest expense will increase as we continue to draw down our loan.

Accretion of Redeemable Convertible Preferred Stock

      Accretion of redeemable convertible preferred stock relates primarily to the 10% annual interest feature on the Series A and Series B redeemable convertible preferred stock as well as the deemed dividend of $0.8 million recorded on the Series D preferred stock issued in March 2004 resulting from a beneficial conversion feature. The accretion and deemed dividend were $1.9 million for the three months ended March 31, 2004, an increase of $1.5 million from $0.4 million for the three months ended March 31, 2003. The increase resulted from the issuance of Series A and Series B redeemable convertible preferred stock during the third quarter of 2003 and the issuance of the Series D convertible preferred stock in March 2004.

Results of Operations

Year Ended December 31, 2003 Compared to the Period from June 14, 2002 (Date of Inception) through December 31, 2002

Revenue

      To date, our revenue has been derived primarily from our strategic alliance. In 2003, we received a $2.0 million license fee from Merck in connection with our strategic alliance, almost all of which has been deferred and is being recognized as revenue over six years, the estimated period of performance under the collaboration agreement. We did not recognize any revenue in 2002.

Research and Development Expenses

      Research and development expenses were $13.1 million in 2003, an increase of $9.8 million from $3.3 million in 2002. This increase resulted primarily from an increase in noncash stock-based compensation of $2.6 million, research and development expenses incurred by Alnylam Europe, which we acquired in July 2003, of $2.1 million, and the increase in payroll and related costs of our research and development team of $2.1 million. The remainder of the increase is primarily a result of an expansion of our technology development program during 2003 and the impact of a full year of operations in 2003.

General and Administrative Expenses

      General and administrative expenses were $7.5 million in 2003, an increase of $6.6 million from $0.9 million in 2002. This resulted from an increase due to the addition of Alnylam Europe of $0.9 million,

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and an increase due to the hiring of additional employees and key members of the management team of $1.8 million. The remainder of the increase is primarily a result of the impact of a full year of operations in 2003.

Purchased In-Process Research and Development

      In July 2003, in connection with our acquisition of Alnylam Europe, we allocated $4.6 million of the purchase price to purchased in-process research and development, which we recorded as an expense in our consolidated statement of operations in 2003. As of December 31, 2003, the technological feasibility of the projects had not yet been reached and management believes the assumptions included in the valuation analysis continue to be valid.

      Below is a brief description of the Alnylam Europe purchased in-process research and development projects and their status as of December 31, 2003.

                             
Estimated
Cost to Year of
Value at Complete at Expected
Program Description Development Status at Acquisition December 31, Product
or Indication December 31, 2003 Date 2003 Launch





($ in thousands)
Malignant Melanoma
  Research   $ 1,756     $ 12,871       2012 (1)
Pancreatic Carcinoma
  Research     2,853       10,769       2012 (1)
         
     
         
    Total:   $ 4,609     $ 23,640          
         
     
         


(1)  Our intention for these programs is to conduct the first phase of clinical trials and then out-license the programs to a partner. Upon out-licensing, we expect the partner to bear all development costs and control clinical development. We expect to earn payments upon the attainment of clinical milestones by any such partner and royalties on product sales. Since such a partner would control the clinical development, we will be unable to influence the timing of the achievement of the milestones, if at all, or the estimated year of the product launch, if at all. Our valuation assumed a development period of approximately 10 years, with milestones being earned during that period, which management believes is a typical time period required to bring a drug to market. Actual results will differ from these estimates due to the uncertainties surrounding drug development.

      Our strategy is to focus on the development of our Direct RNAi programs for AMD and PD. In addition we are continuing to build the capabilities of our product engine to enable the development of Systemic RNAi programs and expand the range of diseases that can be treated with our RNAi therapeutics. We believe Systemic RNAi capabilities will enable us to develop RNAi therapeutics to treat a broader range of diseases, including cancers such as malignant melanoma and pancreatic carcinoma.

Interest Income and Expense

      Interest income was $0.2 million in 2003 and $0.1 million in 2002. This increase resulted primarily from higher cash balances due to net proceeds of $27.5 million from the issuance of convertible preferred stock in 2003. Interest expense was $0.1 million in 2003, and relates to the equipment line of credit used for financing equipment purchases. We had no interest expense in 2002.

Accretion of Redeemable Convertible Preferred Stock

      The accretion of redeemable convertible preferred stock was $2.9 million in 2003, an increase of $2.2 million from $0.7 million in 2002. The increase is primarily from the issuance of Series A and Series B redeemable convertible preferred stock during 2003 and, to a lesser extent, the impact of accretion for the full year.

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Liquidity and Capital Resources

      We commenced operations in June 2002. Since our inception, we have generated significant losses. As of March 31, 2004, we had an accumulated deficit in the development stage of $43.9 million. We have funded our operations primarily through the proceeds of $54.9 million from the sale of equity securities. As of March 31, 2004, we had restricted cash of $2.7 million and cash and cash equivalents of $21.6 million, consisting primarily of money market instruments, compared to cash and cash equivalents of $15.5 million as of December 31, 2002, and $23.2 million as of December 31, 2003.

      Net cash used in operating activities was $1.3 million in 2002, $12.8 million in 2003 and $8.5 million for the three months ended March 31, 2004. The use of cash in each period resulted primarily from funding our efforts in business planning, research and development, acquiring intellectual property rights, recruiting management and technical staff and raising capital. In addition, during the three months ended March 31, 2004, we paid $3 million of the $5 million due under the license agreement with Isis, which was signed in March 2004.

      Net cash used in investing activities was $0.6 million in 2002, $3.2 million in 2003 and $2.1 million for the three months ended March 31, 2004. The use of cash in each period resulted primarily from the purchase of research and development equipment and, additionally in 2003 and in the three months ended March 31, 2004, capital expenditures related to the tenant improvements for our new facility in Cambridge, Massachusetts. We estimate that we will spend $2.9 million to complete the tenant improvements for this new facility in the first half of 2004.

      Net cash provided by financing activities was $17.3 million in 2002, $23.7 million in 2003 and $9.0 million for the three months ended March 31, 2004. The net cash provided by financing activities resulted primarily from the sale of convertible preferred stock of $17.3 million in 2002, $27.5 million in 2003 and $10.0 million for the three months ended March 31, 2004. In 2003, we borrowed $2.1 million under an equipment line of credit and repaid a $3.0 million note assumed in the Alnylam Europe acquisition.

      On March 11, 2004, we entered into a collaboration and license agreement with Isis providing for an upfront license payment to Isis of $5.0 million, of which $3.0 million was paid upon the signing of the agreement and the remaining $2.0 million is due on January 3, 2005. We also agreed to make milestone payments (totalling $3.4 million payable upon the occurrence of specified development and regulatory events) and royalties to Isis for each product that we or a collaborator develop utilizing Isis intellectual property. In addition, we agreed to pay to Isis a percentage of some fees from strategic collaborations we enter into that include access to the Isis intellectual property. In connection with the agreement, Isis purchased 1,666,667 shares of our Series D preferred stock for $10.0 million. Isis also agreed to pay us a license fee, milestone payments (totalling $3.4 million payable upon the occurrence of specified development and regulatory events) and royalties for each product developed by Isis or a collaborator that utilizes our intellectual property.

      We also in-license technology from a number of other sources. Pursuant to these in-license agreements, we will be required to make payments if and when we achieve specified development and regulatory milestones. If we successfully commercialize products that utilize technology licensed under these agreements, we will be required to pay aggregate milestone payments ranging from $0.6 million to $2.4 million per product under each of these agreements.

      During 2003, we secured an equipment line of credit to finance equipment purchases of up to $2.5 million. The borrowings bore interest at 0.25% over the prime rate of interest plus an additional 8% due at the end of the term, which was recorded as additional interest expense over the term of each borrowing. The borrowings were repayable over 42 months. The line of credit was collateralized with all of our assets other than intellectual property. As of December 31, 2003, we had an aggregate of $1.9 million outstanding under this facility. On March 31, 2004, we repaid all amounts outstanding under this facility with proceeds from a borrowing under our new line of credit described below and terminated this facility.

      On March 31, 2004, we entered into an equipment line of credit to finance equipment purchases of up to $10 million. The borrowings bear interest at 3% over the prime rate of interest plus an additional 11.5% due at the end of the term of each borrowing. We will make interest only payments on all draw-downs made

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during the period from March 30, 2004 through June 30, 2005 at which point all draw-downs under the line of credit will be repaid over 48 months. The borrowings are collateralized by the assets financed.

      Based on our current operating plan, we believe that the proceeds from this offering, together with our existing resources, will be sufficient to fund our planned operations through at least the end of 2005, during which time we expect to extend the capabilities of our product engine, initiate development of a product for the treatment of wet AMD and continue to prosecute patent applications and otherwise build and maintain our patent portfolio. However, we may require significant additional funds earlier than we currently expect in order to develop and commence clinical trials for any product candidates we identify.

      We expect to seek additional funding through collaborative arrangements and public or private financings. Additional funding may not be available to us on acceptable terms or at all. In addition, the terms of any financing may adversely affect the holdings or the rights of our stockholders. For example, if we raise additional funds by issuing equity securities, further dilution to our existing stockholders may result. If we are unable to obtain funding on a timely basis, we may be required to significantly curtail one or more of our research or development programs. We also could be required to seek funds through arrangements with collaborators or others that may require us to relinquish rights to some of our technologies or product candidates that we would otherwise pursue.

      Even if we are able to raise additional funds in a timely manner, our future capital requirements may vary from what we expect and will depend on many factors, including the following:

  •  our progress in demonstrating that siRNAs can be active as drugs;
 
  •  our ability to develop relatively standard procedures for selecting and modifying siRNA drug candidates;
 
  •  progress in our research and development programs, as well as the magnitude of these programs;
 
  •  the timing, receipt, and amount of milestone and other payments, if any, from present and future collaborators, if any;
 
  •  our ability to establish and maintain additional collaborative arrangements;
 
  •  the resources, time and costs required to successfully initiate and complete our preclinical and clinical trials, obtain regulatory approvals, protect our intellectual property and obtain and maintain licenses to third-party intellectual property;
 
  •  the cost of preparing, filing, prosecuting, maintaining, and enforcing patent claims; and
 
  •  the timing, receipt and amount of sales and royalties, if any, from our potential products.

Off-Balance Sheet Arrangements

      We do not have any off-balance sheet arrangements or relationships with unconsolidated entities or financial partnerships, such as entities often referred to as structured finance or special purpose entities.

Contractual Obligations and Commitments

      Set forth below is a description of our contractual cash obligations as of December 31, 2003.

                                         
2005 2008
Less than through through After
Contractual Obligations Total One Year 2007 2009 2009






($ in thousands)
Operating lease obligations
  $ 15,246     $ 1,637     $ 6,092     $ 4,086     $ 3,431  
Short and long-term debt
    2,123       645       1,478              
Consulting agreements
    360       144       216              
     
     
     
     
     
 
Total contractual cash obligations
  $ 17,729     $ 2,426     $ 7,786     $ 4,086     $ 3,431  
     
     
     
     
     
 

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      On March 26, 2004, we entered into an agreement with Perini Building Company, Inc. for the build out of our new facility in Cambridge, Massachusetts. The contract contains a guaranteed maximum price of $5.4 million, $0.8 million of which we had paid as of March 31, 2004 and the remainder of which we expect to pay by June 30, 2004. As part of the lease agreement that we entered into with the landlord of this facility, the landlord will reimburse us for up to approximately $3.0 million of certain of the costs of the tenant improvements.

      On April 23, 2004, we agreed to indemnify one of our licensors for damages arising in connection with the intellectual property licensed under the license agreement.

Recently Issued Accounting Pronouncements

      In January 2003, the FASB issued Interpretation No. 46, Consolidation of Variable Interest Entities, an interpretation of Accounting Research Bulletin No. 51 , or FIN 46. FIN 46 requires existing unconsolidated variable interest entities to be consolidated by their primary beneficiaries if the entities do not effectively disperse risks among parties involved. Variable interest entities that effectively disperse risk will not be consolidated unless a single party holds an interest or combination of interests that effectively recombines risks that were previously dispersed. FIN 46 also requires enhanced disclosure requirements related to variable interest entities. FIN 46 applies immediately to variable interest entities created after January 31, 2003, and to variable interest entities in which an enterprise obtains an interest after that date. It applies in the first fiscal year or interim period ending after December 15, 2003 to variable interest entities in which an enterprise holds a variable interest that it acquired before February 1, 2003. We do not expect our adoption of FIN 46 to have a material impact on our financial statements.

      In May 2003, the FASB issued SFAS No. 150, Accounting for Certain Financial Instruments with Characteristics of both Liabilities and Equity , or SFAS No. 150. SFAS No. 150 requires that certain financial instruments, which under previous guidance were accounted for as equity, must now be accounted for as liabilities. The financial instruments affected include mandatorily redeemable stock, certain financial instruments that require or may require the issuer to buy back some of its shares in exchange for cash or other assets and certain obligations that can be settled with shares of stock. SFAS No. 150 is effective for all financial instruments entered into or modified after May 31, 2003 and must be applied to our existing financial instruments effective July 1, 2003, the beginning of the first fiscal period after June 15, 2003. The adoption of SFAS No. 150 did not have a material impact on our financial condition or results of operations.

Quantitative and Qualitative Disclosures about Market Risk

      We are exposed to market risk related to changes in interest rates. Our current investment policy is to maintain an investment portfolio consisting mainly of U.S. money market and government-grade securities, directly or through managed funds, with maturities of one year or less. Our cash is deposited in and primarily invested through highly rated financial institutions in North America, primarily in money market funds, as of March 31, 2004. Our short-term investments are subject to interest rate risk and will fall in value if market interest rates increase. If market interest rates were to increase immediately and uniformly by 10% from levels at March 31, 2004, we estimate that the fair value of our investment portfolio would decline by an immaterial amount. While our cash and investment balances will increase upon completion of the offering described by this prospectus, we will have the ability to hold our fixed income investments until maturity, and therefore we would not expect our operating results or cash flows to be affected to any significant degree by the effect of a change in market interest rates on our investments.

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BUSINESS

Overview

      We are a biopharmaceutical company seeking to develop and commercialize new drugs that work through a recently discovered system in cells known as RNA interference, or RNAi. We believe that drugs that work through RNA interference, or RNAi therapeutics, have the potential to become a major class of drugs, like small molecule, protein and antibody drugs. Using our intellectual property and the expertise we have built in RNAi, we are developing a set of biological and chemical methods and know how that we expect to apply in a systematic way to develop RNAi therapeutics for a variety of diseases. We refer to these methods and their systematic application as our “product engine”. Using our current capabilities, we have initiated programs to develop RNAi therapeutics that will be administered directly to diseased parts of the body, which we refer to as Direct RNAi therapeutics. We believe there are multiple opportunities for Direct RNAi therapeutics. Our current Direct RNAi programs are focused on an eye disease known as age-related macular degeneration, or AMD, and on Parkinson’s disease, or PD. We expect to initiate a clinical trial for our lead AMD product candidate in 2005. We are also working to extend our capabilities to enable the development of RNAi therapeutics that travel through the blood stream to reach diseased parts of the body, which we refer to as Systemic RNAi therapeutics. We believe Systemic RNAi will be used to treat a broad range of diseases.

      RNAi is a recently discovered natural mechanism for selectively silencing genes. Genes provide cells with coded instructions for making proteins, and silencing a gene refers to stopping or reducing production of the protein specified, or encoded, by that gene. Our goal is to develop new drugs that use the RNAi mechanism to selectively silence genes encoding proteins that play harmful roles in disease. We intend to develop drugs based on a type of molecule known as small interfering RNA, or siRNA. siRNAs are the molecules within cells that directly trigger RNAi. We expect that our RNAi therapeutics will consist of chemically modified siRNAs designed to silence specific genes. Given the recent availability of the base sequence of the entire human genome, RNAi therapeutics can be designed, in theory, to silence any gene that encodes a protein involved in disease, even if currently this protein cannot be adequately controlled by conventional drugs.

      We believe that we have a strong intellectual property position relating to the development and commercialization of siRNAs as therapeutics, consisting of:

  •  a concentration of intellectual property rights claiming fundamental features of siRNAs and their use as therapeutics, which includes our ownership of, or exclusive rights to, several issued patents and pending patent applications;
 
  •  a broad portfolio of intellectual property relating to chemical modifications of siRNAs, including over 150 patents licensed from Isis Pharmaceuticals, Inc.; and
 
  •  a number of pending patent applications claiming siRNAs directed to specific targets as treatments for particular diseases.

We have filed or licensed over 200 patents and patent applications in the RNAi field.

      Our goal is to develop and commercialize RNAi therapeutics. To access the substantial funding and expertise required to develop and commercialize RNAi therapeutics, we intend to form strategic collaborations with pharmaceutical companies. In the collaborations we form in the near term, we expect to take the lead role in discovery and early preclinical development of specific RNAi therapeutics, and to share responsibilities with our collaborators in later-stage development and commercialization of these RNAi therapeutics. We expect that our collaborators will provide us with significant funding for the work we perform, access to their development and commercial capabilities, and a share of revenues from products we originate. Our first such alliance is with Merck & Co., Inc. Over time, as we expand our capabilities and resources, we expect the nature of the collaborations we form to evolve, so that we take on progressively more responsibility for development and commercialization of products we originate, and retain a greater share of the revenues these products generate. In the longer term, we expect to develop and commercialize RNAi therapeutics independently.

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      Our scientific founders have published significant discoveries in the field of RNAi. In addition, we have assembled an experienced management team to implement our business plan. Members of our management team have led discovery, development and commercialization programs for a number of marketed drugs, including Aranesp, Neulasta, Angiomax and Velcade.

RNA Interference

      RNAi is a recently discovered mechanism that occurs naturally within cells and selectively silences the activity of specific genes. Genes provide cells with instructions for producing proteins. Proteins perform many of the vital functions of the cell and of the human body. Although the roles they play are generally beneficial, in certain circumstances, proteins can be harmful. Many human diseases are caused by the inappropriate behavior of proteins. A particular protein may, for example, be present in too great a quantity, be too active or appear in the wrong place or at the wrong time. In these circumstances, the ability to stop or reduce production of the protein by selectively silencing the gene that directs its synthesis could be very beneficial towards the treatment of the disease.

      Beginning in 1999, our scientific founders described and provided evidence that the RNAi mechanism occurs in mammalian cells and that its immediate trigger is a type of molecule known as small interfering RNA, or siRNA. They showed that laboratory-synthesized siRNAs could be introduced into the cell and suppress production of specific target proteins. Because it is possible, in theory, to design and synthesize siRNAs specific for any gene of interest, we believe that RNAi therapeutics have the potential to become a broad new class of drugs.

How RNA interference Works

      RNA is a crucial intermediate in the process by which the cell uses inherited genetic information. This information is passed from one generation to the next in the form of genes, which are made of a substance known as deoxyribonucleic acid, or DNA. Generally, each gene contains the instructions that tell the cell how to make one specific protein. These instructions are in a coded form. The code is based on the four different chemical building blocks from which DNA is made, usually designated by the first letters of their chemical names, A, C, G and T. It is the sequence in which these building blocks, or bases, occur in a gene that tells the cell what protein to make. Most gene sequences are thousands of bases long, and the variety possible in such long sequences allows the cell to produce a large number of different proteins.

      One very important property of DNA is that it is double-stranded, consisting of two separate strands intertwined around each other in a double helix. The two strands are held together by base pairs that form between bases on the opposite strands. Strict rules govern the formation of these base pairs: an A on one strand can pair with a T on the other, and a G can pair with a C, but no other pairings are allowed. The double-stranded nature of DNA and the strict rules governing base-pairing are fundamental to ensuring that genetic information is copied accurately when it is handed down from one generation to the next.

      Base-pairing rules are also fundamental to the process by which the cell uses, or expresses, genetic information to make a protein. To initiate this process, the cell makes a working copy of the gene that encodes the protein. This working copy is made not of DNA but of a closely related substance called ribonucleic acid, or RNA. The working copy is known as messenger RNA, or mRNA. Unlike DNA, mRNA has only one strand. However, the application of base-pairing rules during synthesis of this strand ensures that the sequence of bases in mRNA accurately reflects the base sequence, and thus the genetic information, in the gene being copied. This mRNA then associates with the cell’s protein synthesis machinery, where it directs synthesis of a protein in such a way that the structure of the protein is directly determined by the sequence of bases in the mRNA, and thus in the gene. The protein specified by a particular gene or mRNA is said to be encoded by that gene or mRNA. When this protein is made, the gene is said to be active or expressed.

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      Although many RNA molecules, like mRNA, are single-stranded, RNA is capable of forming double-stranded molecules analogous to those formed by DNA. When it does so, base-pairing rules apply. As a result, only RNA molecules with complementary sequences can form double-stranded structures. Every base on one strand has to line up with its permitted base-pair partner on the other strand, otherwise the double-stranded structure will be unstable.

      Double-stranded RNA, or dsRNA, is crucial to the phenomenon of RNAi. A particular type of dsRNA interferes with the activity of specific genes by triggering the breakdown of mRNAs copied from these genes, preventing production of the proteins they encode. Selection of mRNAs for breakdown is driven by base-pairing between the target mRNAs and the separated strands of the dsRNA. Thus, the mRNAs selected for breakdown are those which contain base sequences identical to base sequences in one strand of the dsRNA. As a result, RNAi leads to selective silencing of specific genes with little impact on other genes whose mRNAs do not share base sequences with the dsRNA.

      In nature, the cell initiates RNAi by cutting longer dsRNAs into smaller dsRNA pieces that have 25 or fewer base pairs. These shorter dsRNAs are known as small interfering RNAs, or siRNAs. siRNAs are double-stranded along most of their length but have unpaired bases, or overhangs, at each end, which are important for their activity. siRNAs are the molecules that actually trigger RNA interference. They do so by a process that has three main steps as shown in the figure below.

(CHART)

  Step 1. siRNAs associate with several proteins to form an assembly known as the RNA-induced silencing complex, or RISC. The two strands of the siRNA become separated as the RISC is formed, so that RISC contains an unpaired single-stranded RNA.
 
  Step 2. The RISC then looks for mRNA molecules that contain base sequences complementary to the single-stranded RNA it contains — that is, sequences within the mRNA whose bases can pair up exactly, using base-pairing rules, with the bases in the single-stranded RNA.
 
  Step 3. Once this pairing occurs, the RISC complex cuts the mRNA into two separate pieces at the base-paired region, destroying its ability to direct protein synthesis. The RISC complex is then available to cut additional mRNA molecules that contain the appropriate base sequence.

      Repetitive cycles through steps two and three lead to catalytic degradation of mRNAs that contain a sequence complementary to the siRNA strand in the RISC. The ability of each RISC complex to cut multiple mRNA molecules consecutively in a catalytic manner is one of the reasons why we believe RNAi will be effective at silencing gene activity.

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Opportunity for Therapeutics Based on RNAi

      In May 2001, one of our scientific founders published the first scientific paper demonstrating that the siRNAs required to trigger RNA interference need not be generated inside the cell. Instead, siRNAs can be synthesized in the laboratory using chemical or biochemical methods and introduced into cells to silence the activity of a specific gene. As a result of the human genome project, complete base sequences are available for most human genes. With the sophisticated bioinformatics tools that were developed in conjunction with the genome project, it is possible to scan through the gene that encodes a particular protein and select base sequences that are of the appropriate length for siRNAs and unique to that gene. Several siRNAs targeted to the gene of interest can then be synthesized. Each synthesized siRNA will contain a sequence capable of base-pairing exactly with a short stretch of the sequence of the mRNA copied from the target gene. The synthetic siRNAs can then be tested to determine whether they silence the activity of this gene and suppress the synthesis of the protein it encodes.

      The use of siRNAs has been broadly adopted by academic and industrial researchers for the fundamental study of the function of genes. Important information about the function of a gene can often be deduced by suppressing, or knocking-down, its activity and examining the effect this has on the behavior of a cell or animal. There are now many examples in which such suppression of gene activity has been achieved, in whole or in part, using synthetic siRNAs. In just a few years after siRNAs were discovered, they have become the tools of choice for the selective knock-down of gene function by research scientists, and have largely displaced other methods previously used for this purpose. Reflecting this, siRNAs are a growing portion of the market for research reagents and related products and services.

      One important application of such knock-down studies is to confirm the role of a particular gene or protein in a disease, a process often referred to as target identification or target validation. If silencing a gene with an siRNA leads to improvements in disease symptoms in an experimental disease model, this implies that the target gene or protein plays an important role in the disease. It also implies that the siRNA that suppresses the gene in the model system may be a useful starting point for the development of a drug. We believe that it will be possible to develop these siRNAs into potent and specific drugs.

Broad Potential of siRNAs as Therapeutics

      The success of siRNAs in silencing gene activity in experimental systems suggests that siRNAs could potentially be developed into a broad class of human therapeutics. We believe this new class of drugs has the potential to become a major class of drugs because RNAi therapeutics could offer the following benefits:

  •  Ability to treat a broad range of diseases. Given the availability of the base sequence of the entire human genome, in theory, it could be possible to design siRNAs to suppress the production of virtually any human protein whose presence or activity causes disease. This suggests that RNAi therapeutics could potentially be used to treat a broad range of diseases.
 
  •  Ability to target proteins that cannot be targeted effectively by existing drug classes. Many proteins that play important roles in disease cannot be targeted effectively with small molecules and therapeutic proteins, including monoclonal antibodies. These proteins are commonly referred to as non-druggable targets. In the case of small molecule drugs, many proteins are non-druggable because it has proved difficult to synthesize drug candidates with appropriate specificity, potency and safety. In the case of protein drugs, the range of available targets is limited to targets outside the cell. These limitations on small molecule and protein drugs should not apply to siRNAs, which, in theory, can be synthesized to target any gene in the genome. Therefore, we believe RNAi therapeutics will be able to target proteins that small molecule and protein drugs cannot currently target.
 
  •  Inherently potent mechanism of action. One molecule of siRNA could potentially do the work of thousands of molecules of conventional drugs. With conventional drugs, one drug molecule is typically required for every protein molecule whose activity needs to be blocked. Accordingly, to block several thousand protein molecules, several thousand drug molecules are required. In contrast, a single siRNA molecule can potentially block the synthesis of many protein molecules. This is because each siRNA

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  within a RISC complex can trigger destruction of multiple mRNA molecules, each of which could otherwise direct the synthesis of many protein molecules. This inherent potency of the RNAi mechanism suggests a potentially high degree of potency for RNAi therapeutics.
 
  •  Simplified discovery of drug candidates. Identification of small molecule and protein drug candidates typically requires screening of a large number of potential candidates to find prospective leads. These leads must then undergo significant optimization in order to become drug candidates. Particularly in the case of small molecule drug candidates, the optimization procedure can be very challenging, and has to be almost entirely repeated for each candidate. Identification of siRNA drug candidates has the potential to be much simpler and take considerably less time because, in theory, it will involve relatively standard processes that can be applied in a similar fashion to many successive product candidates.

      For these potential benefits of siRNA drugs to be realized, it will be necessary to create chemically-synthesized siRNAs that are potent, specific, stable and safe and also capable of reaching the appropriate tissues and cells. The incorporation of such properties into siRNAs is the focus of our product engine.

Our Business Strategy

      Our strategy is to use our intellectual property and expertise in RNAi to develop and commercialize RNAi therapeutics. The key elements of our business strategy are as follows:

  •  Pursue product opportunities in a phased approach based on the capabilities of our product engine. With the goal of accelerating the development of RNAi therapeutics, we are implementing a phased approach to product development. Using the current capabilities of our product engine, we will focus initially on the development of Direct RNAi therapeutics. We believe there are multiple opportunities for Direct RNAi therapeutics. As we extend the capabilities of our product engine, we will initiate development of Systemic RNAi products. We believe this approach will allow us to initiate product development activities in three main phases.

  —  Direct RNAi therapeutics. We intend to utilize the current capabilities of our product engine by focusing our efforts on developing RNAi therapeutics that can be administered directly to diseased parts of the body, such as the eye, the brain or the lungs. As part of this phase, we have initiated Direct RNAi programs focused on AMD and PD.
 
  —  Systemic RNAi therapeutics for liver-based diseases. As we extend the capabilities of our product engine, we intend to develop RNAi therapeutics for liver-based diseases. We intend to focus on the liver because it is central to several important diseases and also appears, on the basis of early preclinical evidence, to take up siRNAs more readily than other tissues.
 
  —  Systemic RNAi therapeutics for other diseases. As a third phase of our product development strategy, we will seek to develop RNAi therapeutics that exert their effects in tissues other than the liver. We believe achievement of this objective could permit us to develop Systemic RNAi drugs for a broad range of diseases, such as cancer and autoimmune diseases.

  •  Maintain a strong intellectual property position in the RNAi field. We believe we have a strong intellectual property position relating to the development and commercialization of siRNAs as therapeutics. To build upon our existing intellectual property position, we are focusing on patent and patent applications covering:

  —  fundamental aspects of the structure and uses of siRNAs, including their use as therapeutics;
 
  —  chemical modifications to siRNAs that improve their suitability for therapeutic uses; and
 
  —  siRNAs directed to specific targets as treatments for particular diseases.

  In March 2004, we entered into a collaboration with Isis that provides us with rights to over 150 issued patents covering fundamental aspects of double-stranded RNA therapeutics designed to work through a RNAi mechanism and chemical modifications that may enhance their pharmaceutical

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  properties. Isis agreed that it will not grant corresponding rights to any third party for any dsRNA products designed to work through a RNAi mechanism, except in the context of a collaboration in which Isis plays an active role.

  •  Capitalize on our expertise in RNAi and our intellectual property position to gain access to additional resources to develop and commercialize RNAi therapeutics. We believe that we can use our expertise and the strength of our intellectual property to drive the formation of strategic alliances that will provide us with significant funding and access to important additional resources. We expect these resources to include significant additional capital as well as expertise in the development, manufacturing and commercialization of novel therapeutics. We intend to take an active role in these alliances, including maintaining certain development and commercialization rights. We also intend to use our early alliances to expand our own capabilities so that in the future we will be able to develop and commercialize our therapeutic products independently. To date, we have entered into one such alliance with Merck, the goal of which is to jointly develop advanced RNAi technology and therapeutics.
 
  •  Leverage our intellectual property position by licensing our technology to generate revenues. We intend to license our intellectual property to third parties for the development and commercialization of RNAi therapeutics outside our areas of strategic focus through our Interfe Rx Program. We expect to receive license fees, annual maintenance fees, milestone payments and royalties on sales of any resulting RNAi therapeutics. We also intend to grant further licenses to our intellectual property for the development and commercialization of research reagents and services. To date, we have granted research reagents licenses to Invitrogen Corporation and Cell Signaling Technology, Inc. and have granted research service licenses to Invitrogen, Cenix Bioscience AG and RNAx GmbH. We grant these licenses in return for an initial license fee, annual renewal fees and royalties on sales of siRNA research reagents and services.

Alnylam Product Engine

      To realize the potential of RNAi therapeutics as a broad new class of drugs, we are developing capabilities that we can apply to any specific siRNA in a relatively standard fashion to endow it with drug-like properties. We use the term product engine to describe these capabilities because we believe they will enable us to develop many products across a variety of therapeutic areas. The concept for our product engine is that it will provide a systematic approach to identifying RNAi drug candidates with the following steps:

  •  Sequence selection. Using sophisticated bioinformatics tools we scan through the entire sequence of a target mRNA to identify sequences that are unique to that mRNA and have few closely similar sequences in other mRNAs. From these unique sequences we derive a list of potential siRNAs that would match up exactly with the target mRNA and not with any other mRNAs. We narrow this list down further by applying filters for other important properties, such as the presence of stabilizing sequence motifs that we have identified. This provides us with a shorter list of siRNAs, each of which we then synthesize for experimental evaluation.
 
  •  Potency selection. The siRNAs synthesized in the sequence selection step are tested in cell culture systems to compare their potencies in suppressing production of the target protein.
 
  •  Stabilization by chemical modification. Each of the most potent siRNAs is tested to identify the sites within its structure where it is most vulnerable to attack by enzymes known as ribonucleases that could degrade the siRNA. A minimal set of chemical modifications is then introduced into the siRNA to protect these vulnerable sites, and the modified siRNA is tested to confirm its stability and that it has retained activity against the target mRNA.
 
  •  Improvement of biodistribution by conjugation of additional chemical groups. The stabilized siRNA is further modified by the addition, or conjugation, of one or more chemical groups designed to improve uptake of the siRNA into cells and, if desired, to prolong the time it circulates in the blood.

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      We expect the output of this process to be RNAi drug candidates that are potent against and specific for a particular target, are appropriately stable and are able to penetrate cells of target tissues. Moreover, we expect this process for finding suitable drug candidates will be simpler, faster and more productive than the corresponding process for small molecule and protein drug candidates. Therefore, we believe that any significant success in the development of our product engine will place us in a position to pursue multiple therapeutic opportunities.

Progress in the Development of Product Engine

      We have made considerable progress in establishing capabilities suitable for Direct RNAi drugs, and believe on the basis of early results that we will be able to develop capabilities suitable for Systemic RNAi drugs. In judging our progress, we focus on five key attributes that are important for any drug molecule: potency, specificity, stability, safety and biodistribution.

Potency

      The more potent a drug is, the lower the dose required for a therapeutic effect, and the lower the risk of side effects. Because siRNAs harness the catalytic activity of a natural mechanism to block the synthesis of undesirable proteins, we expect siRNA drugs to be potent at this task. Current data that we and others have generated support this expectation. We have designed and synthesized siRNAs that are highly effective at low concentrations in suppressing target protein production in cultured cells. A frequently used measure of the potency of potential drug candidates is the parameter known as IC 50 , which is the concentration of the drug candidate required to reduce the activity of the target protein by 50% of its normal level. The lower the IC 50 value, the more potent the drug candidate. We have made siRNAs that suppress target protein production in cultured cells with IC 50 values similar to, or lower than, the values typically observed for other types of drugs in analogous experiments. Further, the siRNAs we have made and tested in cell culture experiments for one of our programs have demonstrated greater potency than siRNAs others have tested against the same target in published experiments. In this program, we have also demonstrated with one siRNA that suppression of gene activity continued for at least seven days after cells were exposed to low concentrations of the siRNA on the first day. Although these observations need to be extended to experiments in animals and then to clinical testing in humans, they lead us to believe that we will be able to identify siRNAs with potency that is sufficient for therapeutic use.

Specificity

      To maximize beneficial effects and minimize harmful ones, a drug should be highly selective for its intended target and have minimal activity against unintended targets. For siRNAs, careful selection of an appropriate base sequence can provide a high degree of specificity for the target mRNA. Some evidence has been reported of off-target effects with certain siRNAs, meaning that these siRNAs affected mRNAs other than their intended targets. However, we believe that such effects can be minimized by the use of sophisticated bioinformatics tools to improve selection of siRNA sequences and by judicious incorporation of chemical modifications at appropriate positions within the siRNA molecule. Therefore, we believe we will be able to identify siRNA molecules that are sufficiently specific to the target mRNAs.

Stability

      To be effective, drugs must be stable in the body long enough to reach the tissues in which their effects are required and then to exert those effects. To endow siRNA molecules with appropriate stability, we are introducing a series of chemical modifications into siRNAs to protect them against enzymes called ribonucleases that would otherwise degrade them. We have also identified certain sequence motifs that help to stabilize the siRNAs that contain them, and which we can incorporate by design into the siRNAs we make. We use various experimental systems to assess the impact of sequence selection or chemical modifications on the stability of siRNAs. These systems include incubation of modified siRNAs at body temperature in samples of animal or human serum or in extracts made from animal tissues, such as the liver or the eye. We also assess the stability of siRNAs by injecting them into animals and analyzing samples of serum or tissues

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for the presence of intact siRNA. These analyses are performed using radioactive labels to trace the fate of the siRNAs or using a biochemical test known as a ribonuclease protection assay to detect the presence of the siRNAs. Using these analytical procedures, we have systematically evaluated the impact of various chemical modifications within siRNA molecules. As a result, we have developed a series of rules enabling us to synthesize siRNAs that are more resistant to breakdown in our experimental systems than unmodified siRNAs but which also retain sufficient potency in cell culture experiments. We have shown that a modified siRNA can maintain stability for 24 hours, whereas many unmodified siRNAs are largely degraded within minutes.

Safety

      All drugs carry the risk of side effects. These effects may have a variety of causes, including incomplete specificity of the drug for its intended target or an adverse interaction between the drug and the body’s systems for monitoring and disposing of foreign materials. In the case of RNAi drugs, our ability to choose siRNAs that are potent and selective for their targets should help to minimize side effects caused by lack of specificity. Moreover, we are deliberately minimizing the number of chemical modifications we are introducing into siRNAs to enhance stability and other properties and believe that this will help minimize potential adverse effects on the body’s disposal systems.

      Because siRNAs are dsRNAs, one further potential side effect is activation of the so-called interferon response, which can be provoked by dsRNAs and causes influenza-like symptoms. The published evidence concerning the interferon response and siRNAs is inconclusive. It has been reported that dsRNAs must be at least 30 base pairs long to activate the interferon response, suggesting that our siRNAs, which typically only have 19 base pairs, will be short enough to not trigger this response. However, there are also recent reports suggesting that siRNAs less than 30 base pairs long may trigger the response. Our approach is to test the siRNAs we are considering as drug candidates and to select siRNAs that do not trigger an interferon response.

Biodistribution

      Biodistribution refers to the ability of drugs to reach different tissues within the body and to enter cells within these tissues. Because RNA molecules are typically unable to enter cells without the use of special delivery agents, biodistribution is considered to be one of the key issues to be addressed before siRNAs can be developed into drugs. We believe we have made considerable progress addressing biodistribution for siRNAs. For example, we have recently demonstrated that:

  •  The attachment of a chemical structure to one end of an siRNA molecule enables that molecule to enter cultured cells without any other delivery agent. To demonstrate entry of the modified siRNA into cells, we incubated cultured cells with various concentrations of the modified siRNA or of an siRNA having the same base sequence but lacking the crucial modification. Activity of the target protein was reduced to about 20% of its normal level in the cells incubated with the modified siRNA, but was essentially unaffected in the cells incubated with the siRNA lacking the crucial modification. We refer to this modification as the permeation group, and use the term permeating siRNAs to describe siRNAs to which we have attached the permeation group.
 
  •  A permeating siRNA remains in the circulation of a mouse and a rat for longer than a similar siRNA that has not been modified with the permeation group. In a test to measure the lifetime of injected siRNA, we demonstrated that a permeating siRNA was detectable in the circulation of a mouse and a rat 12 hours after injection, whereas an unmodified siRNA was barely detectable after one hour.
 
  •  A permeating siRNA can make its way to the liver after injection into the tail vein of a mouse. We made extracts from the livers of mice that had been injected with various siRNAs and used the ribonuclease protection assay to analyze these extracts for the presence of siRNA. siRNAs were only observed in liver extracts if the injected siRNAs had been modified by attachment of the permeation group. No siRNAs were observed in liver extracts from mice that had not been injected or had been injected with siRNAs lacking the permeation group.

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  •  Liver concentrations of a target mRNA and protein can be measured in the same liver extracts that contain a permeating siRNA. We have designed experiments that will enable us to measure liver concentrations of a target mRNA and protein in the same liver extracts that contain a permeating siRNA. Important steps that we have yet to prove are that permeating siRNAs enter the appropriate cells within the liver and that they are active in reducing the amount of target mRNA or protein in the liver.

      These experiments lead us to believe that we will be able to identify siRNAs that have appropriate drug-like properties.

Our Development Programs

      Given our progress in developing our product engine we have begun work on Direct RNAi drug candidates and believe that we will also be able to move forward with Systemic RNAi drug candidates in the future. Using the current capabilities of the product engine, we have initiated two programs to identify specific siRNAs for potential further development as Direct RNAi drug candidates. Our two current programs are focused on age-related macular degeneration and Parkinson’s disease.

Age-Related Macular Degeneration

Market Opportunity

      AMD can cause severe deterioration of vision and may ultimately cause blindness. The National Eye Institute estimates that over 1.6 million adults over 50 in the United States suffer from advanced AMD. The siRNAs we are exploring would treat wet AMD, a subtype of AMD often associated with severe vision loss. According to AMD Alliance International, approximately 200,000 new cases of wet AMD are diagnosed in North America each year and approximately 500,000 new cases of wet AMD are diagnosed worldwide each year.

      The macula is the central area of the retina, and is the area most responsible for visual acuity, or sharpness of vision. Macular degeneration is a complex process involving the formation of new blood vessels immediately behind the retina. These newly formed vessels tend to be relatively fragile, and to leak blood and fluid into the surrounding tissue. The presence of leaked fluids and new blood vessels behind the retina physically disrupts the integrity of the macula, resulting in blurring of central vision, and ultimately blindness.

Current Treatments

      Current treatments for AMD are limited in their effectiveness and there is only one drug approved for treatment of wet AMD, Visudyne. Visudyne is used in a two-step process known as photodynamic therapy whose goal is to seal newly formed blood vessels behind the retina so that they neither grow nor leak. However, Visudyne is only approved for the treatment of certain subtypes of wet AMD, and its beneficial effects are frequently modest and of limited duration. The only current alternative to photodynamic therapy is treatment with a laser to burn out newly formed blood vessels. Unfortunately, this treatment can also cause irreversible damage to the retina, resulting in significant blind spots, and its beneficial effects appear to be of limited duration.

      Several companies are currently pursuing a new approach to treat wet AMD by blocking the activity of a protein known as vascular endothelial growth factor, or VEGF. There is evidence that VEGF promotes both the growth and the leakage of new blood vessels behind the retina in AMD. Eyetech Pharmaceuticals, Inc. and Genentech, Inc. each have investigational drugs, Macugen and Lucentis, respectively, directed against VEGF in advanced stages of clinical testing for the treatment of wet AMD. These drugs are intended to block the activity of VEGF by binding to it. Two other companies are in the early stages of developing siRNA products to block VEGF activity. One of these products is intended to limit production of VEGF by suppressing the activity of the VEGF gene. The other is intended to limit production of a protein known as VEGF-receptor, which is the protein on cell surfaces that VEGF must bind to in order to exert its effects.

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Alnylam Program

      We are developing a RNAi therapeutic, which we refer to as VEGF Production Inhibitor, for the treatment of wet AMD. We believe that a RNAi therapeutic that suppresses VEGF gene activity, thereby cutting off VEGF production, could have significant advantages over drugs that bind to VEGF once it has been produced or that limit production of the VEGF-receptor. We have identified siRNAs that suppress the activity of the VEGF gene potently and specifically in cultured cells. We believe that the siRNAs we have identified are significantly more potent and effective than VEGF-directed siRNAs reported by others, and that we can apply the current capabilities of our product engine to develop them into competitive drug candidates. We are currently evaluating these siRNAs in animal models relevant to wet AMD and expect to begin a clinical trial for a wet AMD product candidate in 2005. Any siRNA we develop for wet AMD will be a Direct RNAi drug administered by direct injection into the eye, the method of administration for Macugen and Lucentis in their clinical trials. We have filed patent applications relating to the use of siRNAs to suppress VEGF production for therapeutic purposes.

Parkinson’s Disease

Market Opportunity

      PD is a disorder of the nervous system that, according to the American Parkinson Disease Association, afflicts more than 1.5 million people in the United States and, according to the World Health Organization, afflicts approximately four million people worldwide. In its early stages PD is characterized by uncontrollable tremors that gradually increase in severity. As the disease progresses it can lead to severe loss of mobility and dementia. According to Decision Resources, sales of drugs for treating PD in major pharmaceutical markets are expected to grow to approximately $3 billion by 2012.

      The symptoms of PD are caused by a shortage of a substance called dopamine in a key region of the brain. Dopamine plays an important role in transmitting signals between nerve cells and in regulating movement. The shortage of dopamine in PD is caused by the death of dopamine-producing cells in a region of the brain known as the substantia nigra.

Current Treatments

      Currently approved treatments address the symptoms of PD rather than its cause and largely rely on drugs that replace the function of the missing dopamine. These drugs act in a variety of ways, including mimicking dopamine, boosting the amount of dopamine in the brain, enhancing the activity of dopamine boosters or mimics, slowing down the breakdown of dopamine and compensating for diminished dopamine activity. Over time, however, patients cease to respond to these drugs, and there are no effective treatments for advanced PD.

      Several companies are currently seeking to develop drugs that treat PD by altering the course of the disease. These investigational drugs include CEP-1347, which is being developed by Cephalon, Inc. in collaboration with H. Lundbeck A/S, GDNF, which is being developed by Amgen Inc., TCH-346, which is being developed by Novartis AG, and rasagiline, which is being developed jointly by Teva Pharmaceutical Industries Ltd. and H. Lundbeck A/S.

Alnylam Program

      The goal of our program is to develop a RNAi therapeutic that will slow or halt the progress of PD. Instead of replacing the function of missing dopamine in persons with PD, the siRNAs we have begun to explore as potential treatments of PD would attempt to prevent the shortage of dopamine by preventing the death of dopamine-producing cells that causes this shortage. Based on recent scientific findings, we believe that it may be possible to prevent the death of those cells by using an siRNA to suppress production of a protein known as alpha-synuclein. Recent evidence suggests that the presence of excessive amounts of alpha-synuclein in dopamine-producing cells contributes to their death. We have identified siRNAs that suppress the activity of the alpha-synuclein gene in cultured cells. We recently entered into a collaboration with the Mayo Foundation for Medical Education and Research and the Mayo Clinic Jacksonville, which we refer to collectively as the Mayo Clinic, to explore this possibility in animal models of PD.

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      The collaboration is established with an initial one-year period to explore whether an siRNA could be effective in treating PD and allows for an extension of the collaboration if the results are positive. We expect that any resulting RNAi therapeutic would be a Direct RNAi drug administered using a specialized medical device to infuse the drug into the appropriate region of the brain. Accordingly, we would anticipate collaborating with a manufacturer of such devices to develop appropriate procedures for delivery. We have secured an option for an exclusive license to a patent application filed by the Mayo Clinic relating to the use of siRNAs to suppress production of alpha-synuclein for therapeutic purposes.

Strategic Alliances and Licenses

Strategic Alliances

      We intend to form strategic alliances to gain access to the financial, technical, clinical and commercial resources necessary to develop and market RNAi therapeutics. We expect these alliances to provide us with financial support in the form of equity investments, research and development funding, license fees, milestone payments and royalties or profit sharing based on sales of RNAi therapeutics. Our first strategic alliance is with Merck for the development of advanced RNAi technology and therapeutics.

Merck

      In September 2003, Alnylam entered into a five-year strategic alliance with Merck to develop advanced RNAi technology and RNAi therapeutics. For technology development, both parties committed to devote significant human resources and expertise to the collaborative development of advanced RNAi technology. Merck will have exclusive rights to use Alnylam’s RNAi technology and the RNAi technology developed jointly under the collaboration solely for the identification and validation of drug targets. Alnylam will have rights to use this technology for all internal research purposes and in collaborations in which the primary purpose is the development of therapeutic products using RNAi. For therapeutics development, Merck agreed to provide Alnylam with twelve proprietary drug targets over the course of the collaboration that have well-validated roles in disease and that appear attractive as potential targets for RNAi therapeutics. Alnylam has the right, but not the obligation, to develop siRNA drug candidates against each target provided by Merck. If Alnylam advances a candidate to a defined point in preclinical development, Alnylam and Merck will then decide whether Alnylam, Merck or the two companies together will proceed with the further development and commercialization of that candidate. For each drug candidate that Merck decides to develop, whether by itself or jointly with Alnylam, Merck will pay Alnylam a fee at the time of its decision, and will also reimburse Alnylam for one-half of the costs we incurred previously on that candidate. If the parties agree to develop a drug candidate together, we will share development expenses and co-promote the products upon terms to be determined by mutual agreement. If it is determined that Merck will develop the drug candidate without Alnylam’s further involvement, Merck will bear all development expenses and will pay Alnylam a royalty on product sales. Likewise, if it is determined that Alnylam will develop the drug candidate without further Merck involvement, Alnylam will bear all development expenses and will pay Merck a royalty on product sales. In that event, Alnylam would retain the right to collaborate with a third party on the development and commercialization of that drug candidate.

      In connection with this alliance, Merck made a $2 million cash payment and $5 million equity investment in Alnylam during 2003. Further cash payments are due from Merck in each of 2004 and 2005. Merck will make an additional cash payment and equity investment totaling $7 million upon the first demonstration by Alnylam of RNAi activity in live animals, as measured by agreed upon scientific criteria.

Licenses

      We intend to enter into licensing arrangements with third parties to enhance our intellectual property position and to generate revenues from our intellectual property rights. We recently entered into a collaboration and license agreement with Isis under which we obtained rights to a broad portfolio of intellectual property relating to double-stranded RNA therapeutics designed to work through a RNAi mechanism. To generate revenues from our intellectual property rights, we have established our Interfe Rx program and our research reagents and services licensing program.

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Isis Pharmaceuticals, Inc.

      In March 2004, we entered into a collaboration and license agreement with Isis, a leading developer of single-stranded antisense oligonucleotide drugs that target RNA. The agreement further enhances our intellectual property position with respect to RNA-based therapeutics and our ability to develop double-stranded RNA for RNAi therapeutics, and provides us with the opportunity to defer investment in manufacturing technology. Isis granted us licenses to its current and future patents and patent applications relating to chemistry and to RNA-targeting mechanisms for the research, development and commercialization of double-stranded RNA products. We have the right to use Isis technologies in our development programs or in collaborations, and Isis has agreed not to grant licenses under these patents to any other organization for any dsRNA products designed to work through a RNAi mechanism, except in the context of a collaboration in which Isis plays an active role. We granted Isis non-exclusive licenses to our current and future patents and patent applications relating to RNA-targeting mechanisms and to chemistry for research use. We also granted Isis the exclusive or co-exclusive right to develop and commercialize double-stranded RNA products against a limited number of targets. In addition, we granted Isis non-exclusive rights to our patents and patent applications for research, development and commercialization of single-stranded RNA products.

      Under the terms of our agreement, we agreed to pay Isis an upfront license fee of $5 million, $3 million of which was paid upon signing of the agreement and the remaining $2 million of which is due on January 3, 2005. We also agreed to pay milestone payments (totalling $3.4 million payable upon the occurrence of specified development and regulatory events) and royalties to Isis for each product that we or a collaborator develop utilizing Isis intellectual property. In addition, we agreed to pay to Isis a percentage of some fees from strategic collaborations we may enter into that include access to the Isis intellectual property. In conjunction with the agreement, Isis made a $10 million equity investment in Alnylam. Isis also agreed to pay us a license fee, milestone payments (totalling $3.4 million payable upon the occurrence of specified development and regulatory events) and royalties for each product developed by Isis or a collaborator that utilizes our intellectual property. The agreement also gives us an option to use Isis’ manufacturing services for RNA-based therapeutics.

      Our agreement with Isis also gives us the exclusive right to grant sub-licenses for Isis technology to third parties with whom we are not collaborating. We may include these sub-licenses in our Interfe Rx licenses. If a license includes rights to Isis’ intellectual property, we will share revenues from that license equally with Isis.

      If, by January 1, 2008, we or a collaborator have not completed the studies required for an investigational new drug application filing or similar foreign filing for at least one product candidate involving these patent rights, Isis would have the right to grant licenses to third parties for the patents and patent applications licensed to us, thereby making our rights non-exclusive.

InterfeRx Program

      Our Interfe Rx program consists of the licensing of our intellectual property to others for the development and commercialization of RNAi therapeutics relating to specific protein targets outside our areas of strategic focus. We expect to receive license fees, annual maintenance fees, milestone payments and royalties on sales of any resulting RNAi therapeutics. Generally, we do not expect to collaborate with our Interfe Rx licensees in the development of RNAi therapeutics, but may do so in appropriate circumstances. To date, we have not entered into any Interfe Rx licenses.

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Research Reagents and Services

      We have granted licenses to our intellectual property for the development and commercialization of research reagents and services, and intend to enter into additional licenses on an ongoing basis. Our target licensees are vendors that provide siRNAs and related products and services for use in biological research. To date, we have entered into research reagent licenses with Invitrogen Corporation and Cell Signaling Technology, Inc. and research service licenses with Invitrogen Corporation, Cenix Bioscience AG and RNAx GmbH. We grant these licenses in return for an initial license fee, annual renewal fees and royalties from sales of siRNA research reagents and services. No single research reagent or research services license is material to our business.

Research Collaborations

      We may also enter into collaborations with leading research and medical institutions in connection with our development of RNAi therapeutics for specific indications. Our arrangement with the Mayo Clinic related to PD is an example of this type of collaboration.

Mayo Clinic

      In October 2003, we entered into a one-year research collaboration with the Mayo Clinic to develop an siRNA that suppresses the expression of alpha-synuclein, which is over-expressed in patients with PD. Under the collaboration, we agreed to identify, synthesize and provide siRNA drug candidates to the Mayo Clinic, which will test these candidates for their efficacy in a series of in vitro and in vivo studies. We provide research funding to the Mayo Clinic, and have the option to acquire exclusive licenses to background intellectual property held by the Mayo Clinic and inventions arising out of the collaboration.

Patents and Proprietary Rights

      We have devoted considerable effort and resources to establish what we believe to be a strong position in intellectual property relevant to RNAi therapeutics. In this regard, we have focused on patents, patent applications and other intellectual property covering:

  •  fundamental aspects of the structure and uses of siRNAs, including their use as therapeutics, and RNAi-related mechanisms;
 
  •  chemical modifications to siRNAs that improve their suitability for therapeutic uses; and
 
  •  siRNAs directed to specific targets as treatments for particular diseases.

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Intellectual Property Related to Fundamental Aspects and Uses of siRNA and RNAi-related Mechanisms

      In this category, we include patents and patent applications that claim key aspects of RNAi-related mechanisms. Specifically, we include patents and patent applications relating to targeted cleavage of mRNA directed by RNAi-like oligonucleotides, double-stranded RNAs of particular lengths, particular structural features of these dsRNAs, such as overhanging ends, and uses of these dsRNAs. Our strategy has been to secure rights to the potentially key patents and patent applications covering the fundamental aspects of siRNAs on an exclusive basis where possible or appropriate. The following table lists patents or patent applications to which we have secured rights that we regard as being potentially fundamental for the use of siRNAs as therapeutics.

                         

Licensor/ Subject Priority
Patent Owner Matter Date Inventors Status Alnylam Rights

Isis Pharmaceuticals   Inactivation of target mRNA     06/06/1997     S. Crooke   Issued in the United States, pending in the EU   Exclusive rights for therapeutic purposes related to dsRNAs*

Carnegie Institution of Washington   Double- stranded RNAs to induce RNAi     12/23/1997     A. Fire,
C. Mello
  Issued in the United States, pending elsewhere   Non-exclusive rights for therapeutic purposes

Alnylam   Short double- stranded RNAs as therapeutics     01/30/1999     R. Kreutzer,
S. Limmer
  Granted in the EU, issued in Germany and South Africa, pending in the United States and elsewhere   Owned

Cancer Research Technology Limited   RNAi uses in mammalian cells     11/19/1999     M. Zernicka-Goetz,
M.J. Evans,
D.M. Glover
  Pending worldwide   Exclusive rights for therapeutic purposes

Massachusetts Institute of Technology, Whitehead Institute, Max Planck organization**   Mediation of RNAi by siRNAs containing 21-23 base pairs     03/30/2000     D.P. Bartel,
P.A. Sharp,
T. Tuschl,
P.D. Zamore
  Pending worldwide   Non-exclusive rights for therapeutic purposes**

Max Planck organization   siRNAs with 3’-overhangs as therapeutics     12/01/2000     T. Tuschl,
S. Elbashir,
W. Lendeckel
  Pending worldwide   Exclusive rights for therapeutic purposes

Cold Spring Harbor Laboratory   RNAi uses in mammalian cells     03/16/2001     D. Beach,
G. Hannon
  Pending worldwide   Non-exclusive rights for therapeutic purposes

Stanford University   RNAi uses in vivo     07/23/2001     M.A. Kay,
A.P. McCaffrey
  Pending worldwide   Co-exclusive rights for therapeutic purposes

  * Alnylam holds co-exclusive therapeutic rights with Isis. However, Isis has agreed not to license such rights to any third party, except in the context of a collaboration in which Isis plays an active role.

** Alnylam holds exclusive rights to the interest owned by three of four co-owners. The fourth co-owner, the University of Massachusetts, has licensed its interest separately to third parties.

      We believe we have a strong portfolio of broad and exclusive rights to fundamental siRNA patents and patent applications. In securing these rights, we have focused on obtaining the strongest rights for those

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intellectual property assets we believe will be most important in providing competitive advantage with respect to RNAi therapeutics. We note in particular the third and sixth patents and patent applications listed in the table above, those covering inventions by Dr. Kreutzer and Dr. Limmer and by Dr. Tuschl and his colleagues. We believe the so-called Kreutzer-Limmer European patent is the only patent so far granted that specifically covers the use of short dsRNAs as therapeutics. Through our acquisition of Alnylam Europe in 2003, we own this patent outright, as well as corresponding patent applications in other countries, including the United States. The pending patent application filed by the Max Planck organization on the invention by Dr. Tuschl and his colleagues, or the Tuschl II patent application, covers a key structural feature of siRNAs, namely the presence of overhangs at the 3’-end of each of the two strands. We have obtained an exclusive license to claims in the Tuschl II patent application uniquely covering the use of RNAi for therapeutic purposes. The application contains claims relating to therapeutic uses of siRNAs with or without concomitant gene therapy. Our exclusive rights are to the claims that do not require concomitant gene therapy.

      As indicated in the table, two other RNAi-related patents have already been issued that pre-date the Kreutzer-Limmer patent. These are the Crooke patent and the Fire and Mello patent. The Crooke patent, owned by and licensed from Isis, covers the use of oligonucleotides to promote degradation of target mRNA by enzymes that recognize dsRNAs, such as those involved in RNAi. Under the terms of our license agreement, Isis agreed not to grant licenses under this patent to any other organization for dsRNA products designed to work through a RNAi mechanism, except in the context of a collaboration in which Isis plays an active role. The Fire and Mello patent owned by the Carnegie Institution covers the use of dsRNAs to induce RNAi. The Carnegie Institution has made this patent broadly available for licensing and we, like many companies, have taken a non-exclusive license to the patent for therapeutic purposes. We believe, however, that the Fire and Mello patent does not claim specific structural features of dsRNAs that are important for the biological activity of siRNAs in mammalian cells. These specific features are the subjects of the Kreutzer-Limmer patent and the Tuschl II patent application for which we have secured exclusive rights.

      The Kreutzer-Limmer patent was granted by the European Patent Office in 2002 and in South Africa in 2003 and is pending in other countries, including the United States. In addition, a German Utility Model covering RNAi composition was branched off the European patent application, and was registered by the German Patent and Trademark Office in 2003. A German Utility Model is a form of patent that is directed only to physical matter, such as medicines, and does not cover methods. The German Utility Model is valid for ten years from the time of the filing of its parent European patent application and is thus in effect until 2010. The issuance of the European patent is currently being opposed by several other companies under a provision of the European Patent Convention that allows such opposition. It may be several years before the outcome of this opposition is decided by the EPO.

      The Enlarged Board of Appeal at the EPO has just rendered a decision in an unrelated case covering what is known as “disclaimer practice”. With a disclaimer, a patent applicant gives up, or disclaims, part of the originally claimed invention in a patent application in order to overcome prior art and adds a limitation to the claims which may have no basis in the original disclosure. The Enlarged Board determined that disclaimer practice is allowed under the European Patent Convention under a defined set of circumstances. It now has to be determined, as part of the opposition proceedings regarding the Kreutzer-Limmer patent, whether the use of a disclaimer during the prosecution of this case falls within one of the allowable circumstances. Determination by the EPO opposition division that the use of the disclaimer in this case does not fall under one of the allowed circumstances could result in the invalidation of the Kreutzer-Limmer patent. Even if the EPO opposition division determines that the use of a disclaimer is permissible, the Kreutzer-Limmer patent would remain subject to the other issues raised in the opposition. In the event that the Kreutzer-Limmer patent is invalidated, there are pending claims in continuing applications before the EPO based on the original Kreutzer-Limmer priority application filings that do not have a disclaimer in them. These pending claims have the potential of issuing as a patent that could give significant coverage to structural features of siRNAs.

      The other pending patent applications listed in the table either provide further coverage for structural features of siRNAs or relate to the use of siRNAs in mammalian cells. For some of these we have exclusive rights, for others non-exclusive. While we believe these pending patent applications are important, we also believe that access to the Kreutzer-Limmer patent and the Tuschl II patent application will be of particular

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importance for development and commercialization of RNAi therapeutics, which is why we have secured exclusive positions with respect to these assets. However, because RNAi is a relatively new field, few patents have been issued, and many potentially key patent applications are still pending.

Intellectual Property Related to Chemical Modifications

      Over the last fifteen years a large amount of effort has been devoted by academics and other biotechnology companies to two other technologies with the potential to selectively turn off gene activity. These technologies are known as antisense oligonucleotides and ribozymes. Both involve using short DNA or RNA molecules to intercept specific mRNAs so as to reduce production of proteins encoded by these mRNAs. Scientists and companies working on antisense oligonucleotides and ribozymes have developed a variety of chemical modifications that can be applied to short DNA and RNA molecules to endow them with drug-like properties. A number of patents have been issued to these scientists and companies claiming the chemical modifications they have developed. Isis has been very successful in obtaining such patents. We recently entered into a collaboration and license agreement with Isis that provides us with rights to use over 150 issued patents relating to chemical modifications we may wish to incorporate into our RNAi therapeutics. Isis also granted us rights based on future chemistry patent applications filed in the next five years to which it has rights. We believe that access to this intellectual property from Isis could accelerate our development of RNAi therapeutics by enabling us to capitalize on proprietary chemistry developed by Isis instead of designing around this chemistry. Under the terms of our license agreement, Isis agreed not to grant licenses under these patents to any other organization for dsRNA products designed to work through a RNAi mechanism, except in the context of a collaboration in which Isis plays an active role.

      In addition to licensing these intellectual property rights from Isis, we are also working to develop our own proprietary modifications that we can apply to siRNAs to endow them with drug-like properties. We have filed a number of patent applications relating to novel chemical modifications that we may apply to siRNAs. We filed these applications relatively recently, and are still evaluating which chemical modifications we may incorporate into siRNA drugs. We may not know for a number of years whether the modifications we use will be patentable or free of patents held by others.

Intellectual Property Related to siRNAs Directed to Specific Targets

      We have also filed a number of patent applications claiming specific siRNAs directed to a large number of targets as treatments for specific diseases. We recognize, however, that there may be a significant number of competing applications filed by other organizations on similar siRNAs. Because our subsidiaries, Alnylam Europe and Alnylam U.S., were among the first companies to focus on RNAi therapeutics, we believe that a number of our patent applications may predate competing applications that others may have filed. With respect to specific siRNAs, we believe that the most important patent coverage will ultimately result from demonstrating that particular compositions exert suitable biological and therapeutic effects. Accordingly, we are focused on achieving such demonstrations for siRNAs in key therapeutic areas.

      Because the work we and others are performing to develop siRNAs as drugs is at a relatively early stage, and because many patent applications on specific siRNAs are pending but none, to our knowledge, have been issued, we may not know for a number of years whether any siRNA drugs we develop will be patentable and free of patents held by others.

Competition

      The pharmaceutical marketplace is extremely competitive, with hundreds of companies competing to discover, develop and market new drugs. We face a broad spectrum of current and potential competitors, ranging from very large, global pharmaceutical companies with significant resources to other biotechnology companies with resources and expertise comparable to our own. We believe that for most or all of our drug development programs, there will be one or more competing programs in other companies. In many cases the companies with competing programs will have access to greater resources and expertise than we do and may be more advanced.

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      The competition we face can be grouped into three broad categories:

  •  Other companies working to develop RNAi therapeutics;
 
  •  Companies developing technology known as antisense, which, like RNAi, attempts to silence the activity of specific genes by targeting the mRNAs copied from them; and
 
  •  Marketed products and development programs that compete with the drugs we may try to develop.

Other Companies Working to Develop RNAi Therapeutics

      We are aware of several other companies that are working to develop RNAi therapeutics. Some of these companies are seeking, as we are, to develop chemically synthesized siRNAs as drugs. Others are following a gene therapy approach, with the goal of treating patients not with synthetic siRNAs but with genes designed to produce siRNA-like molecules within cells.

      Companies working on chemically synthesized siRNAs include Sirna Therapeutics, Inc., Genta, Inc., and Acuity Pharmaceuticals, Inc. Sirna Therapeutics has approximately ten years’ prior experience working to develop RNA molecules as drugs. This experience was largely gained with a different class of RNA molecules known as ribozymes, but could potentially be relevant for siRNAs. Companies working on gene therapy approaches to RNAi therapeutics include Nucleonics, Inc. and Benitec Ltd. In addition, CytRx Corporation may be developing RNAi therapeutics.

Other Companies Working to Develop Antisense Technology

      Antisense technology uses short, single-stranded, DNA-like molecules known as oligonucleotides to block mRNAs encoding specific proteins. An antisense oligonucleotide, or ASO, contains a sequence of bases complementary to a sequence within its target mRNA, enabling it to attach to the mRNA by base-pairing. The attachment of the ASO may lead to breakdown of the mRNA, or may physically block the mRNA from associating with the protein synthesis machinery of the cell. In either case, production of the protein encoded by the mRNA may be reduced. Typically, the backbone of an ASO, the linkages that hold its constituent bases together, will carry a number of chemical modifications that do not exist in naturally occurring DNA. These modifications are intended to improve the stability and pharmaceutical properties of the ASO.

      While we believe that RNAi drugs may potentially have significant advantages over ASOs, including greater potency and specificity, others are developing ASO drugs that are currently at a more advanced stage of development than RNAi drugs. For example, ISIS has developed an ASO drug, Vitravene, which is currently on the market, and has several ASO drug candidates in clinical trials. In addition, a number of other companies have product candidates in various stages of preclinical and clinical development, including Genta Inc., which has a drug candidate known as Genasense under review by the FDA as a potential treatment for various forms of cancer. ASOs, rather than siRNAs, may become the preferred technology for drugs that target mRNAs in order to turn off the activity of specific genes.

Competing Drugs for Age-Related Macular Degeneration

      We are currently evaluating siRNAs that suppress VEGF gene activity as potential drug candidates for the treatment of wet AMD. VEGF is believed to play a major role in wet AMD by stimulating the growth and leakage of new blood vessels that disrupt the retina. siRNAs that reduce production of VEGF may potentially suppress the growth and leakage of these vessels. Visudyne, the only currently marketed drug for wet AMD, also targets these blood vessels. Worldwide sales of Visudyne were approximately $357 million in 2003. Visudyne is used in a two-step process known as photodynamic therapy. The first step in this therapy is to administer the drug by infusing it into a vein. The second step, after sufficient time has been allowed for the drug to reach the eye, is to shine laser light of the right color into the patient’s eye. This activates the drug, which then damages the walls of new blood vessels behind the retina, sealing these vessels. Visudyne is only approved for treating certain subtypes of wet AMD, and its beneficial effects may only last for a few months. We believe that a RNAi therapeutic that blocks production of VEGF may be more effective than photodynamic therapy in preventing the growth and leakage of new blood vessels behind the retina.

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      We are also aware of a number of experimental drugs in advanced stages of clinical development for the treatment of wet AMD. These include two drugs that are also intended to block the action of VEGF: Macugen, which is being developed by Eyetech Pharmaceuticals, Inc. in collaboration with Pfizer, Inc., and Lucentis, which is being developed by Genentech, Inc. in collaboration with Novartis AG. Each of these drugs is intended to work by binding to VEGF molecules and blocking their function. Conceptually, this approach requires one molecule of drug for every molecule of VEGF. We believe that a siRNA that blocks production of VEGF could be more effective at lower concentrations, because each siRNA molecule could potentially block production of many VEGF molecules. This is because each siRNA can potentially trigger degradation of multiple VEGF mRNA molecules, each of which could otherwise direct synthesis of multiple VEGF protein molecules.

Competing Drugs for Parkinson’s Disease

      In collaboration with the Mayo Clinic, we are currently evaluating the potential of siRNAs directed against alpha-synuclein gene activity for the treatment of PD. The goal of our program is to find a RNAi therapeutic that will slow or halt the progress of the disease. Should we decide to pursue development of an alpha-synuclein siRNA for this disease, we would face competition from a number of marketed and investigational drugs. Many of the currently marketed drugs for PD work by boosting the levels of dopamine in the brain or by mimicking the action of dopamine. Dopamine is an important substance that is depleted in the brains of PD patients. Current drugs for PD include:

  •  Carbidopa/levodopa, also sold as Sinemet and Atamet . The levodopa component of this combination drug is converted to dopamine in the brain. The carbidopa component helps to prevent the levodopa component from being used up before it reaches the brain. According to the on-line publication DrugTopics.com, sales of carbidopa/levodopa in the United States were approximately $202 million in 2003.
 
  •  Entacapone, sold as Comtan . Entacapone is another drug that prevents the breakdown of levodopa, further helping to increase dopamine levels in patients who take the carbidopa/levodopa combination. According to its developer, Orion Pharma of Finland, worldwide sales of Comtan were approximately 75 million in 2002.
 
  •  Selegiline, also sold as Eldepryl and Deprenyl . Selegiline slows the breakdown of dopamine, which is another strategy to boost depleted levels of dopamine in the brains of PD patients. According to DrugTopics.com, sales of selegiline in the United States were approximately $23 million in 2001.
 
  •  Mirapex, Perman and Requip, trade names for the drugs pramipexole, pergolide and ropinirole . These drugs are known as dopamine agonists, which mimic dopamine rather than boost dopamine levels.

      By boosting or mimicking dopamine levels, all of these drugs help to treat the symptoms of PD, but none address the underlying cause of the disease, which is the death of brain cells that produce dopamine. Recently published scientific findings suggest that the death of these cells may be caused by over-production of the protein known as alpha-synuclein. We therefore believe that a RNAi therapeutic that reduces alpha-synuclein production could prevent the death of dopamine-producing cells, and thereby slow or halt progression of PD. A RNAi therapeutic with this capability would be expected to offer significant benefits over drugs that simply help alleviate the symptoms of PD.

      We expect that any RNAi therapeutic we succeed in developing for PD would require administration using a specialized medical device to deliver it to the appropriate region of the brain. This requirement could make any RNAi therapeutic we develop less competitive than orally administered drugs for PD, such as the dopamine-boosting drugs described above.

      In addition to marketed drugs, there are a number of investigational drugs for PD currently undergoing clinical development that are intended to alter the course of the disease, including the investigational drugs known as CEP-1347, GDNF, TCH-346 and rasagiline. If one or more of these are developed and marketed successfully before an RNAi therapeutic reaches the marketplace, they could be strong competition for any RNAi therapeutic we may develop to treat PD.

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Regulatory Matters

      The research, testing, manufacture and marketing of drug products and their delivery systems are extensively regulated in the United States and the rest of the world. In the United States, drugs are subject to rigorous regulation by the FDA. The Federal Food, Drug, and Cosmetic Act and other federal and state statutes and regulations govern, among other things, the research, development, testing, manufacture, storage, record keeping, packaging, labeling, promotion and advertising, marketing and distribution of pharmaceutical products. The failure to comply with the applicable regulatory requirements may subject a company to a variety of administrative or judicially-imposed sanctions and the inability to obtain or maintain required approvals or to market approved drug products.

      The steps ordinarily required before a new pharmaceutical product may be marketed in the United States include preclinical laboratory tests, animal tests and formulation studies, the submission to the FDA of an investigational new drug application, which must become effective prior to commencement of clinical testing, and adequate and well-controlled clinical trials to establish that the drug product is safe and effective for the indication for which FDA approval is sought. Satisfaction of FDA pre-market approval requirements typically take several years and the actual time taken may vary substantially depending upon the complexity of the product or the disease. Government regulation may delay or prevent marketing of potential products for a considerable period of time and impose costly procedures on a company’s activities. Success in early stage clinical trials does not necessarily assure success in later stage clinical trials. Data obtained from clinical activities is not always conclusive and may be subject to alternative interpretations that could delay, limit or even prevent regulatory approval. Even if a product receives regulatory approval, later discovery of previously unknown problems with a product may result in restrictions on the product or even complete withdrawal of the product from the market.

      Preclinical tests include laboratory evaluation of product chemistry and formulation, as well as animal trials to assess the potential safety and efficacy of the product. The conduct of the preclinical tests and formulation of compounds for testing must comply with federal regulations and requirements. The results of preclinical testing are submitted to the FDA as part of an investigational new drug application.

      A 30-day waiting period after the filing of an investigational new drug application is required prior to such application becoming effective and the commencement of clinical testing in humans. If the FDA has not commented on, or questioned, the application during this 30-day waiting period, clinical trials may begin. If the FDA has comments or questions these must be resolved to the satisfaction of the FDA prior to commencement of clinical trials. The investigational new drug application process can result in substantial delay and expense. The FDA may, at any time, impose a clinical hold on ongoing clinical trials. If the FDA imposes a clinical hold, clinical trials cannot commence or recommence without FDA authorization and then only under terms authorized by the FDA.

      Clinical trials involve the administration of the investigational new drug to healthy volunteers or patients under the supervision of a qualified investigator. Clinical trials must be conducted in compliance with federal regulations and requirements, under protocols detailing the objectives of the trial, the parameters to be used in monitoring safety and the safety and effectiveness criteria to be evaluated. Each protocol involving testing on subjects in the United States must be submitted to the FDA as part of the investigational new drug application. The study protocol and informed consent information for patients in clinical trials must be submitted to institutional review boards for approval.

      Clinical trials to support new drug applications for marketing approval are typically conducted in three sequential phases, but the phases may overlap. In Phase I, the initial introduction of the drug into healthy human subjects or patients, the drug is tested to assess metabolism, pharmacokinetics and pharmacological actions and safety, including side effects associated with increasing doses. Phase II usually involves trials in a limited patient population, to determine dosage tolerance and optimum dosage, identify possible adverse effects and safety risks, and provide preliminary support for the efficacy of the drug in the indication being studied.

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      If a compound demonstrates evidence of effectiveness and an acceptable safety profile in Phase II evaluations, Phase III trials are undertaken to further evaluate clinical efficacy and to further test for safety within an expanded patient population, typically at geographically dispersed clinical trial sites. Phase I, Phase II or Phase III testing of any product candidates may not be completed successfully within any specified time period, if at all. After successful completion of the required clinical testing, generally a new drug application is prepared and submitted to the FDA.

      We believe that any Direct RNAi product candidate we develop for AMD or Parkinson’s disease will be regulated as a new drug by the FDA. FDA approval of the new drug application is required before marketing of the product may begin in the United States. The new drug application must include the results of extensive clinical and other testing and a compilation of data relating to the product’s pharmacology, chemistry, manufacture and controls. The cost of preparing and submitting a new drug application is substantial. Under Federal law, the submission of new drug applications are additionally subject to substantial application user fees, currently exceeding $500,000, and sponsor under an approved new drug application are also subject to annual product and establishment user fees, currently exceeding $30,000 per product and $200,000 per establishment. These fees are typically increased annually.

      The FDA has 60 days from its receipt of a new drug application to determine whether the application will be accepted for filing based on the agency’s threshold determination that the new drug application is sufficiently complete to permit substantive review. Once the submission is accepted for filing, the FDA begins an in-depth review of the new drug application. The review process is often significantly extended by FDA requests for additional information or clarification regarding information already provided in the submission. The FDA may also refer applications for novel drug products or drug products which present difficult questions of safety or efficacy to an advisory committee, typically a panel that includes clinicians and other experts, for review, evaluation and a recommendation as to whether the application should be approved. The FDA is not bound by the recommendation of an advisory committee. The FDA normally also will conduct a preapproval inspection to ensure the manufacturing facility, methods and controls are adequate to preserve the drug’s identity, strength, quality, purity and stability, and are in compliance with regulations governing current good manufacturing practices.

      If FDA evaluations of the new drug application and the manufacturing facilities are favorable, the FDA may issue an approval letter or an approvable letter followed by an approval letter. An approvable letter generally contains a statement of specific conditions that must be met in order to secure final approval of the new drug application. If and when those conditions have been met to the FDA’s satisfaction, the FDA will typically issue an approval letter. An approval letter authorizes commercial marketing of the drug with specific prescribing information for specific indications. As a condition of new drug application approval, the FDA may require post approval testing and surveillance to monitor the drug’s safety or efficacy and may impose other conditions, including labeling restrictions which can materially impact the potential market and profitability of the drug. Once granted, product approvals may be withdrawn if compliance with regulatory standards is not maintained or problems are identified following initial marketing.

      While we believe that any RNAi therapeutic we develop will be regulated as a new drug under the Federal Food, Drug, and Cosmetics Act, the FDA could decide to regulate RNAi therapeutics as biologics under the Public Health Service Act. Biologics must have a biologics license application, or BLA, approved prior to commercialization. Like new drug applications, BLAs are subject to user fees. To obtain BLA approval, an applicant must provide preclinical and clinical evidence and other information to demonstrate that the biologic product is safe, pure and potent, and that the facilities in which it is manufactured, processed, packed or held meet standards, including drug good manufacturing practices and any additional standards in the license designed to ensure its continued safety, purity and potency. Biologics establishments are subject to preapproval inspections. The review process for BLAs is time consuming and uncertain, and BLA approval may be conditioned on post approval testing and surveillance. Once granted, BLA approvals may be suspended or revoked under certain circumstances, such as if the product fails to conform to the standards established in the license.

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      Once a new drug application or biologics license application is approved, a product will be subject to certain post-approval requirements, including requirements for adverse event reporting and submission of periodic reports. Additionally, the FDA also strictly regulates the promotional claims that may be made about prescription drug products and biologics. In particular, the FDA requires substantiation of any claims of superiority of one product over another, including that such claims be proven by adequate and well controlled head-to-head clinical trials. To the extent that market acceptance of our products may depend on their superiority over existing therapies, any restriction on our ability to advertise or otherwise promote claims of superiority, or requirements to conduct additional expensive clinical trials to provide proof of such claims, could negatively affect the sales of our products or our costs. We must also notify the FDA of any change in an approved product beyond variations already allowed in the approval. Certain changes to the product, its labeling or its manufacturing require prior FDA approval and may require conduct of further clinical investigations to support the change. Such approvals may be expensive and time-consuming and, if not approved, the product will not be allowed to be marketed as modified.

      If the FDA’s evaluation of the new drug application submission or manufacturing facilities is not favorable, the FDA may refuse to approve the new drug application or issue a not approvable letter. The not approvable letter outlines the deficiencies in the submission and often requires additional testing or information in order for the FDA to reconsider the application. Even after submitting this additional information, the FDA ultimately may decide that the application does not satisfy the regulatory criteria for approval. With limited exceptions, the FDA may withhold approval of a new drug application regardless of prior advice it may have provided or commitments it may have made to the sponsor.

      Some of our drug candidates may need to be administered using specialized drug delivery systems. While we expect to rely on drug delivery systems that are already approved to deliver drugs like ours to similar physiological sites, in some instances, we may need to modify the design or labeling of the legally available device for delivery of our product candidate. In such an event, the FDA may regulate the product as a combination product or require additional approvals or clearances for the modified device. Further, to the extent the delivery device is owned by another company, we would need that company’s cooperation to implement the necessary changes to the device and to obtain any additional approvals or clearances. Obtaining such a additional approvals or clearances, and cooperation of other companies, when necessary, could significantly delay, and increase the cost of obtaining, marketing approval, which could reduce the commercial viability of a drug candidate.

      Once a new drug application is approved, the product covered thereby becomes a listed drug that can, in turn, be cited by potential competitors in support of approval of an abbreviated new drug application. An abbreviated new drug application provides for marketing of a drug product that has the same active ingredients in the same strengths and dosage form as the listed drug and has been shown through bioequivalence testing to be therapeutically equivalent to the listed drug. There is no requirement, other than the requirement for bioequivalence testing, for an abbreviated new drug application applicant to conduct or submit results of preclinical or clinical tests to prove the safety or effectiveness of its drug product. Drugs approved in this way are commonly referred to as generic equivalents to the listed drug, are listed as such by the FDA, and can often be substituted by pharmacists under prescriptions written for the original listed drug. Federal law provides for a period of three years of exclusivity following approval of a listed drug that contains previously approved active ingredients but is approved in a new dosage, dosage form, route of administration or combination, or for a new use, the approval of which was required to be supported by new clinical trials conducted by or for the sponsor. During such three-year exclusivity period the FDA cannot grant approval of an abbreviated new drug application to commercially distribute a generic version of the drug based on that listed drug. However, the FDA can approve generic equivalents of that listed drug based on other listed drugs, such as a generic that is the same in every way but its indication for use, and thus the value of such exclusivity may be undermined. Federal law also provides a period of five years following approval of a drug containing no previously approved active ingredients, during which abbreviated new drug applications for generic versions of those drugs cannot be submitted unless the submission accompanies a challenge to a listed patent, in which case the submission may be made four years following the original product approval. Additionally, in the event that the sponsor of the listed drug has properly informed FDA of

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patents covering its listed drug, applicants submitting an abbreviated new drug application referencing that drug, are required to make one of four certifications, including certifying that it believes one or more listed patents are invalid or not infringed. If an applicant certifies invalidity or non-infringement it is required to provide notice of its filing to the new drug application sponsor and the patent holder. If the patent holder then initiates a suit for patent infringement against the abbreviated new drug application sponsor within 45 days of receipt of the notice, the FDA cannot grant effective approval of the abbreviated new drug application until either 30 months has passed or there has been a court decision holding that the patents in question are invalid or not infringed. If the abbreviated new drug application applicant certifies that it does not intend to market its generic product before some or all listed patents on the listed drug expire, then the FDA cannot grant effective approval of the abbreviated new drug application until those patents expire. The first of the abbreviated new drug applicants submitting substantially complete applications certifying that listed patents for a particular product are invalid or not infringed may qualify for an exclusivity period of 180 days running from when the generic product is first marketed, during which subsequently submitted abbreviated new drug applications cannot be granted effective approval.

      From time to time legislation is drafted and introduced in Congress that could significantly change the statutory provisions governing the approval, manufacturing and marketing of drug products. In addition, FDA regulations and guidance are often revised or reinterpreted by the agency in ways that may significantly affect our business and our products. It is impossible to predict whether legislative changes will be enacted, or FDA regulations, guidance or interpretations changed, or what the impact of such changes, if any, may be.

Foreign Regulation of New Drug Compounds

      Approval of a product by comparable regulatory authorities may be necessary in foreign countries prior to the commencement of marketing of the product in those countries, whether or not FDA approval has been obtained. The approval procedure varies among countries and can involve requirements for additional testing. The time required may differ from that required for FDA approval. Although there are some procedures for unified filings for some European countries with the sponsorship of the country which first granted marketing approval, in general, each country has its own procedures and requirements, many of which are time consuming and expensive. Thus, there can be substantial delays in obtaining required approvals from foreign regulatory authorities after the relevant applications are filed.

      In Europe, marketing authorizations may be submitted at a centralized, a decentralized or a national level. The centralized procedure is mandatory for the approval of biotechnology products and provides for the grant of a single marketing authorization that is valid in all European Union member states. As of January 1995, a mutual recognition procedure is available at the request of the applicant for all medicinal products that are not subject to the centralized procedure. We will choose the appropriate route of European regulatory filing to accomplish the most rapid regulatory approvals. However, our chosen regulatory strategy may not secure regulatory approvals on a timely basis or at all.

Hazardous Materials

      Our research and development processes involve the controlled use of hazardous materials, chemicals and radioactive materials and produce waste products. We are subject to federal, state and local laws and regulations governing the use, manufacture, storage, handling and disposal of hazardous materials and waste products. We do not expect the cost of complying with these laws and regulations to be material.

Manufacturing

      We have no commercial manufacturing capabilities. We plan to rely on third parties to manufacture bulk compounds and finished investigational medicines for clinical trials. Commercial quantities of any drugs that we may seek to develop will have to be manufactured in facilities and by processes that comply with FDA and other regulations. We plan to rely on third parties to manufacture commercial quantities of any products that we successfully develop. Under our agreement with Isis, at our request, we may negotiate a manufacturing services agreement with Isis for double-stranded RNA products designed to work through a RNAi mechanism.

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Scientific Advisors

      We seek advice from our scientific advisory board, which consists of a number of leading scientists and physicians, on scientific and medical matters. Our scientific advisory board meets regularly to assess:

  •  our research and development programs;
 
  •  the design and implementation of our clinical programs;
 
  •  our patent and publication strategies;
 
  •  new technologies relevant to our research and development programs; and
 
  •  specific scientific and technical issues relevant to our business.

      The current members of our scientific advisory board are:

     
Name Position/Institutional Affiliation


Dennis A. Ausiello, M.D. 
  Physician-in-chief/ Massachusetts General Hospital
David P. Bartel, Ph.D. 
  Associate Professor/ Whitehead Institute for Medical Research
Fritz Eckstein, Ph.D. 
  Professor/ Max Planck Institute
Edward E. Harlow, Ph.D. 
  Professor/ Harvard Medical School
Robert S. Langer, Ph.D. 
  Germeshausen Professor/ Massachusetts Institute of Technology
Paul R. Schimmel, Ph.D. 
  Professor/ Skaggs Institute for Chemical Biology
Phillip A. Sharp, Ph.D. 
  Institute Professor/ McGovern Institute for Brain Research at MIT
Markus Stoffel, M.D., Ph.D. 
  Heilbrunn Professor/ Rockefeller University
Thomas H. Tuschl, Ph.D. 
  Associate Professor/ Rockefeller University
Phillip D. Zamore, Ph.D. 
  Associate Professor/ University of Massachusetts Medical School

Employees

      As of March 31, 2004, we had 60 full-time employees, 46 of whom were engaged in research and development and 14 of whom were engaged in management, administration and finance. Of our employees, 36 hold M.D. or Ph.D. degrees. None of our employees is represented by a labor union or covered by a collective bargaining agreement, nor have we experienced work stoppages. We believe that relations with our employees are good.

Facilities

      Our operations are based primarily in Cambridge, Massachusetts and Kulmbach, Germany. On April 30, 2004, we moved our Cambridge operations from 790 Memorial Drive to a new facility at 300 Third Street, Cambridge. The properties we lease are listed below:

                                 
Square Monthly
Location Feet Type Lease Expires Lease Payments





300 Third Street, Cambridge, MA
    33,000       Office & laboratory       September 2011     $ 114,000  
Kulmbach, Germany
    14,000       Office & laboratory       June 2008       25,000  

      We also hold a lease on expansion space of 10,600 square feet within the 300 Third Street, Cambridge, Massachusetts facility, for which payment will begin by September 1, 2005, and options to lease an additional

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21,100 square feet of office and laboratory space. We believe that the total space available to us under our current leases and options will meet our needs for the foreseeable future, and that additional space would be available to us on commercially reasonable terms if it were required.

Legal Proceedings

      We are currently not a party to any material legal proceedings.

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MANAGEMENT

Directors, Executive Officers and Other Key Employees

      Our directors, executive officers and other key employees, and their ages and positions as of March 31, 2004, are set forth below:

             
Age Position


Directors and Executive Officers
           
John M. Maraganore, Ph.D.
    41     President, Chief Executive Officer and Director
Barry E. Greene
    40     Chief Operating Officer and Treasurer
Vincent J. Miles, Ph.D.
    53     Senior Vice President, Business Development
Thomas R. Ulich, M.D.
    50     Senior Vice President, Research and Development
Peter Barrett, Ph.D. (2)(3)
    50     Director
John E. Berriman (2)
    55     Director
John K. Clarke (1)(3)
    50     Co-Founder and Chairman of the Board of Directors
Paul R. Schimmel, Ph.D. (1)
    63     Co-Founder and Director
Phillip A. Sharp, Ph.D. (2)(3)
    59     Co-Founder and Director
Kevin P. Starr (1)
    41     Director
Christoph H. Westphal, M.D., Ph.D.
    36     Co-Founder and Director
 
Other Key Employees
           
David M. Konys
    53     Vice President of Corporate Development and Operations
Victor E. Kotelianski, M.D., Ph.D.
    55     Vice President of Research
Muthiah Manoharan, Ph.D.
    51     Vice President of Drug Discovery
Roland Kreutzer, Ph.D.
    44     Co-Founder and Member of Management Board, Alnylam Europe, AG
Stefan Limmer, Ph.D.
    52     Co-Founder and Member of Management Board, Alnylam Europe, AG


(1)  Member of Audit Committee
 
(2)  Member of Compensation Committee
 
(3)  Member of Nominating and Corporate Governance Committee

      John M. Maraganore, Ph.D. has served as our President and Chief Executive Officer and as a member of our board of directors since December 2002. From April 2000 to December 2002, Dr. Maraganore served as Senior Vice President, Strategic Product Development for Millennium Pharmaceuticals, Inc., a biopharmaceutical company. From April 1997 to April 2000, Dr. Maraganore also served as Millennium’s Vice President, Strategic Planning and M&A and as General Manager of Millennium BioTherapeutics, Inc., a former subsidiary of Millennium. Before joining Millennium, Dr. Maraganore served in several capacities including Director of Biological Research and Director of Market and Business Development for Biogen, Inc., a biopharmaceutical company. At Biogen, Dr. Maraganore invented Angiomax, a direct thrombin inhibitor currently marketed by The Medicines Company. Before Biogen, Dr. Maraganore was a Senior Scientist at Zymogenetics, Inc., and a Visiting Research Scientist at The Upjohn Company. Dr. Maraganore received an M.S. and Ph.D. in biochemistry and molecular biology from the University of Chicago.

      Barry E. Greene has served as our Chief Operating Officer since he joined us in October 2003 and as our Treasurer since February 2004. From February 2001 to September 2003, Mr. Greene served as General Manager of Oncology at Millennium Pharmaceuticals, Inc., a biopharmaceutical company. From January 2000 to February 2001, Mr. Greene served as Executive Vice President and Chief Business Officer for

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Mediconsult.com, a medical internet company. From February 1997 to December 2001, Mr. Greene held various vice president positions with AstraZeneca, in marketing and sales roles, most recently as Vice President Strategic Integration. Previously, he was a partner at Andersen Consulting with leadership responsibility in the pharmaceutical/biotechnology marketing and sales practice. Mr. Greene received a B.S. in industrial engineering from the University of Pittsburgh.

      Vincent J. Miles, Ph.D. has served as our Senior Vice President of Business Development since he joined us in July 2003. From May 1997 to July 2003, Dr. Miles held various positions at Millennium Pharmaceuticals, Inc., a biopharmaceutical company, including vice president positions in business development, strategic planning and scientific affairs. Dr. Miles received his bachelor’s degree in biochemistry and his Ph.D. in molecular biology from University College London.

      Thomas R. Ulich, M.D. has served as our Senior Vice President of Preclinical Development since he joined us in October 2003. From 1993 to January 2003, Dr. Ulich held various positions at Amgen, Inc., a biopharmaceutical company, including Vice President of Preclinical Development and Vice President of Preclinical Development and Protein Therapeutics. Dr. Ulich is also Professor of Pathology at the University of California, San Diego. Dr. Ulich received a B.A. from Dartmouth College and an M.D. from the University of California, Los Angeles.

      Peter Barrett, Ph.D. has served as a member of our board of directors since July 2002. Dr. Barrett has served as a Senior Principal of Atlas Venture, a venture capital firm, since January 2002. From August 1998 to December 2001, he served as Executive Vice President and Chief Business Officer of Celera Genomics, a biopharmaceutical company, which he co-founded. He also served as Vice President of Celera from 1994 to 1998. Dr. Barrett received a B.S. in chemistry from Lowell Technological Institute (now known as the University of Massachusetts, Lowell) and a Ph.D. in analytical chemistry from Northeastern University. He also completed Harvard Business School’s Management Development Program.

      John E. Berriman has served as a member of our board of directors since July 2003. Mr. Berriman has served as a Director of Abingworth Management, a venture capital firm specializing in life science biomedical companies, since August 2001. From March 1997 to August 2001, Mr. Berriman served as a consultant to Abingworth. He holds a degree in Chemical Engineering from the University of Cambridge and an M.B.A. from the London Business School.

      John K. Clarke is a founder of Alnylam and has served as the Chairman of our board of directors since June 2002. Since founding Cardinal Partners, a venture capital firm focused on healthcare, in 1997, Mr. Clarke has served as its Managing General Partner. He received an A.B. in economics and biology from Harvard University and an M.B.A. from the Wharton School at the University of Pennsylvania. Mr. Clarke also serves as a director of Cubist Pharmaceuticals, Inc.

      Paul R. Schimmel, Ph.D. is a founder of Alnylam and has served as a member of our board of directors since June 2002. Dr. Schimmel has been a Professor of Molecular Biology at the Skaggs Institute for Chemical Biology since 1997, where he is the Hahn Professor. Dr. Schimmel received a Ph.D. from the Massachusetts Institute of Technology. Dr. Schimmel also serves as a director of Alkermes, Inc. and Repligen, Inc.

      Phillip A. Sharp, Ph.D. is a founder of Alnylam and has served as a member of our board of directors since June 2002. Dr. Sharp is the Founding Director of the McGovern Institute for Brain Research at the Massachusetts Institute of Technology, where he has served as a professor since 1974. In 1993, Dr. Sharp was one of two recipients of the Nobel Prize in Physiology or Medicine, which he received for his work in molecular biology. He received a B.A. from Union College in Kentucky and a Ph.D. in chemistry from the University of Chicago. Dr. Sharp also serves as a director of Biogen Idec.

      Kevin P. Starr has served as a member of our board of directors since September 2003. From December 2001 to December 2002, Mr. Starr served as Chief Operating Officer of Millennium Pharmaceuticals, Inc., a biopharmaceutical company. Mr. Starr also served as Millennium’s Chief Financial Officer from December 1998 to December 2002. From June 2000 to December 2001, Mr. Starr served in various vice president positions at Millennium, including Executive Vice President, Business Operations, and

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Senior Vice President. From March 1998 to December 1998, he served as the Vice President, Finance of Millennium BioTherapeutics, a subsidiary of Millennium. Mr. Starr also served as Corporate Controller of Biogen from 1991 to February 1998. Mr. Starr received a B.A. in mathematics and business from Colby College and an M.S. in corporate finance from Boston College.

      Christoph H. Westphal, M.D., Ph.D. is a founder of Alnylam and has served as a member of our board of directors since our incorporation in June 2002. In addition, from June 2002 to December 2002, Dr. Westphal was our start-up Chief Executive Officer and, from June 2002 to February 2004, he served as our Vice Chairman. Dr. Westphal has served as a General Partner of Polaris Venture Partners, a venture capital firm, since June 2000. Prior to joining Polaris, Dr. Westphal was at McKinsey & Co., a consulting firm. Dr. Westphal received a B.A. from Columbia University and an M.D./ Ph.D. from Harvard Medical School. Dr. Westphal is vice chairman of Momenta Pharmaceuticals, Inc. and Acceleron Pharma.

      David M. Konys has served as our Vice President of Corporate Development since he joined us in April 2003. From March 2001 to September 2002, he served as Vice President Corporate Development for Ingenium Pharmaceuticals, a biopharmaceutical company. From 1985 to March 2001, Mr. Konys served in various positions at Biogen, Inc., a biopharmaceutical company, most recently as Director, Commercial Projects. Mr. Konys received a B.S. in Biology from Xavier University.

      Victor E. Kotelianski, M.D., Ph.D. has served as our Vice President of Research since he joined us in April 2003. From October 2001 to March 2003, Dr. Kotelianski served as Distinguished Investigator, Director Biological Research for Biogen, Inc., a biopharmaceutical company. From October 1996 to December 2001, he also served as Section Head and Group Leader, Department of Immunology and Cell Biology for Biogen. Dr. Kolelianski received an M.D./ Ph.D. from Uzhgorod University School of Medicine and a Ph.D. from the National Academy of Science.

      Muthiah Manoharan, Ph.D. has served as our Vice President of Drug Discovery since he joined us in February 2003. From January 2001 to January 2003, Dr. Manoharan served as Executive Director of Medicinal Chemistry at Isis Pharmaceuticals, Inc., a biotechnology company focused on antisense oligonucleotide therapeutics. He also served as Director, Medicinal Chemistry for Isis Pharmaceuticals from 1996 to January 2001. Dr. Manoharan received a Ph.D. in chemistry at the University of North Carolina-Chapel Hill.

      Roland Kreutzer, Ph.D. is a founder of Alnylam Europe, AG and has served on the Management Board of Alnylam Europe, AG since October 2000. From October 2000 to July 2003 he also served as Chief Executive Officer of Alnylam Europe, AG. From January 1990 to August 2000, he served as an Assistant Professor at the University of Bayreuth, Germany. Dr. Kreutzer received his Ph.D. in molecular genetics from the University of Bayreuth, Germany.

      Stefan Limmer, Ph.D. is a founder of Alnylam Europe, AG and has served on the Management Board of Alnylam Europe, AG since its incorporation in August 2000. From August 2000 to July 2003 he also served as Chief Scientific Officer of Alnylam Europe, AG. He received his Ph.D. in physics from the University of Leipzig. Since February 1995, Dr. Limmer has served as a biochemistry lecturer at the University of Bayreuth, Germany.

Board of Directors

      Upon completion of this offering, we will have a board of directors consisting of eight members. Following this offering, the board of directors will be divided into three classes, each of whose members will serve for a staggered three-year term. The board of directors will consist of three class I directors: John M. Maraganore, Ph.D., Paul R. Schimmel, Ph.D. and Phillip A. Sharp, Ph.D.; three class II directors: John E. Berriman, John K. Clarke and Christoph H. Westphal, M.D., Ph.D.; and two class III directors: Peter Barrett, Ph.D. and Kevin P. Starr. At each annual meeting of stockholders, a class of directors will be elected for a three-year term to succeed the directors of the same class whose terms are then expiring. The terms of the class I directors, class II directors and class III directors expire upon the election and qualification of successor directors at the annual meeting of stockholders held during the calendar years 2005, 2006 and 2007, respectively.

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      Our amended and restated bylaws provide that the authorized number of directors may be changed only by resolution of the board of directors or by the stockholders. Any additional directorships resulting from an increase in the number of directors will be distributed among the three classes, so that, as nearly as possible, each class will consist of one-third of the total number of directors. This classification of the board of directors may have the effect of delaying or preventing changes in the control or management of us.

      Each executive officer is elected by, and serves at the discretion of, the board of directors. Each of our executive officers and directors, other than non-employee directors, devotes his or her full time to our affairs. Each of our directors currently serves on the board of directors pursuant to a stockholders’ voting agreement. The stockholders’ voting agreement will terminate upon the closing of this offering. There are no family relationships among any of our directors or officers.

Board Committees

      Our board of directors has established an audit committee, a compensation committee and a nominating and corporate governance committee. The members of each committee are appointed by the board of directors.

Audit Committee

      We have an audit committee consisting of Kevin P. Starr, Chairman, John K. Clarke and Paul R. Schimmel, Ph.D. The audit committee assists our board of directors in its oversight of:

  •  the integrity of our financial statements;
 
  •  the independent auditor’s qualifications and independence; and
 
  •  the performance of our independent auditors.

      The audit committee has direct responsibility for the appointment, compensation, retention and oversight of the work of our independent accountants, PricewaterhouseCoopers LLP. In addition, the audit committee must approve any related party transaction entered into by us. We believe that each member of the audit committee satisfies the requirements for membership established by the NASDAQ National Market and the SEC.

Compensation Committee

      We have a compensation committee consisting of Peter Barrett, Ph.D., Chairman, John E. Berriman and Phillip A. Sharp, Ph.D. The compensation committee reviews, and makes recommendations to the board of directors regarding, the compensation and benefits of our executive officers and key managers. The compensation committee also administers the issuance of stock options and other awards under our stock plans and establishes and reviews policies relating to the compensation and benefits of our employees and consultants. We believe that each member of the compensation committee satisfies the requirements for membership established by the NASDAQ National Market.

Nominating and Corporate Governance Committee

      We have a nominating and corporate governance committee consisting of John K. Clarke, Chairman, Peter Barrett, Ph.D. and Phillip A. Sharp, Ph.D. The purpose of the nominating and corporate governance committee is to:

  •  identify and nominate members of the board of directors;
 
  •  develop and recommend to the board of directors a set of corporate governance principles; and
 
  •  oversee the evaluation of the board of directors and management.

      Procedures for the consideration of director nominees recommended by stockholders are set forth in our amended and restated bylaws, which will be effective upon completion of this offering. We believe that each member of the compensation committee satisfies the requirements for membership established by the NASDAQ National Market.

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Compensation of Directors

      Each of our directors, other than a director who is employed by us or beneficially owns at least 1.5% of our outstanding capital stock, will receive a fee of $5,000 per quarter for serving on the board of directors. Each of our directors who serves as the chairman of a committee of the board of directors will receive an additional $5,000 per year for each such position held. Directors are reimbursed for reasonable travel and other expenses incurred in connection with attending meetings of the board of directors and its committees.

      Directors are also eligible to participate in our 2004 equity incentive plan. Pursuant to the 2004 plan, each non-employee director is eligible to receive an option to purchase 7,105 shares of our common stock upon his appointment to the board. Each director who (1) is not employed by us, (2) has served as a director for at least six months, (3) does not beneficially own more than 1.5% of our outstanding capital stock and (4) attended at least 75% of the meetings of the board, including meetings of the committees on which the director served, held during the preceding year, is also eligible to receive an option to purchase 5,263 shares of our common stock at each year’s annual meeting at which he or she serves as a director. These stock options vest in full on the first anniversary of the date of grant provided he or she is still serving as a director. Each stock option terminates upon the earlier of ten years from the date of grant and three months after the optionee ceases to serve as a director. The exercise price of these options is the fair market value of our common stock on the date of grant.

      In 2003, Dr. Schimmel and Mr. Starr each received $3,000 per month for service on our board of directors and Dr. Sharp received $1,250 per month for service on our board of directors. In addition, in 2003, we granted the following stock options under our 2003 employee, director and consultant stock plan to the following non-employee directors:

         
Name of Directors Number of Shares


Kevin P. Starr
    52,631  
Phillip A. Sharp, Ph.D. 
    36,842  

These options vest as to 25% of the shares on the first anniversary of the date of grant and, with respect to the option granted to Mr. Starr, as to an additional 2.08% of the shares on the last day of each full calendar month thereafter and, with respect to the option granted to Dr. Sharp, as to an additional 6.25% of the shares on the last day of each calendar quarter thereafter.

Compensation Committee Interlocks and Insider Participation

      None of our executive officers serves as a member of the board of directors or compensation committee, or other committee serving an equivalent function, of any other entity that has one or more of its executive officers serving as a member of our board of directors or compensation committee. None of the current members of our compensation committee has ever been an employee of Alnylam.

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Executive Compensation

      The table below sets forth the total compensation paid or accrued for the fiscal year ended December 31, 2003 for our chief executive officer and each of our three most highly compensated other executive officers who were serving as executive officers on December 31, 2003 and whose total annual compensation exceeded $100,000 for the year ended December 31, 2003. We refer to these officers as our named executive officers.

Summary Compensation Table

                                   
Long-Term
Compensation
Awards
Annual
Compensation Securities

Underlying All Other
Name and Principal Position Salary Bonus Options (#) Compensation





John M. Maraganore, Ph.D.
  $ 369,398     $ 110,000       417,368     $  
 
President and Chief Executive Officer
                               
Thomas R. Ulich, M.D.(1)
    157,403       46,113       157,894       43,462  
 
Senior Vice President, Research and Development
                               
Vincent J. Miles, Ph.D.(2)
    107,716       44,975       78,947        
 
Senior Vice President, Business Development
                               
John G. Conley(3)
    259,453       55,250              
 
Former Chief Financial Officer and Vice President, Finance and Strategy
                               


(1)  Dr. Ulich commenced employment with us in June 2003. His current annual salary is $313,720. The amount indicated under the heading “All Other Compensation” represents reimbursement of relocation expenses and related taxes.
 
(2)  Dr. Miles commenced employment with us in July 2003. His current annual salary is $237,115.
 
(3)  Mr. Conley resigned from Alnylam effective January 31, 2004.

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Option Grants in Last Fiscal Year

      The following table sets forth each grant of stock options during the fiscal year ended December 31, 2003 to each of the named executive officers. The potential realizable value set forth in the last column of the table is calculated based on the term of the option at the time of grant, which is ten years. This value is based on assumed rates of stock price appreciation of 5% and 10% compounded annually from the date of grant until their expiration date, assuming a fair market value equal to an assumed initial public offering price of $11.00, minus the applicable exercise price. These numbers are calculated based on the requirements of the SEC and do not reflect our estimate of future stock price growth. Actual gains, if any, on stock option exercises will depend on the future performance of the common stock on the date on which the options are exercised.

                                                 
Potential Realizable
Percent of Value at Assumed
Number of Total Annual Rates of Stock
Securities Options Price Appreciation for
Underlying Granted to Option Term(3)
Options Employees in Exercise Expiration
Name Granted(1) Fiscal Year Price(2) Date 5% 10%







John M. Maraganore, Ph.D. 
    321,052       22.1 %   $ 0.475       2/25/13     $ 5,504,000     $ 8,764,000  
      96,315 (4)     6.6 %     0.475       2/25/13       1,651,000       2,629,000  
Thomas R. Ulich, M.D. 
    157,894       10.9       0.475       7/31/13       2,707,000       4,310,000  
Vincent J. Miles, Ph.D. 
    78,947       5.4       0.475       7/31/13       1,353,000       2,155,000  
John G. Conley
                                   

(1)  Stock options granted to our executive officers generally vest as to 25% of the shares on the first anniversary of the vesting commencement date established by the board of directors and as to an additional 6.25% of the shares on the last day of each calendar quarter thereafter. See also footnote 4 below.
 
(2)  The exercise price per share was determined to be equal to the fair market value per share of common stock as valued by our board of directors on the date of grant.
 
(3)  Amounts represent hypothetical gains that could be achieved for stock options if exercised at the end of the option term. These gains are based on assumed rates of stock price appreciation of 5% and 10% compounded annually from the date stock options are granted. Actual gains, if any, on stock option exercises will depend on the future performance of common stock on the date on which the stock options are exercised.
 
(4)  Under the terms of the option agreement, 48,157 of these shares vested immediately upon Alnylam entering into its first significant strategic alliance, which occurred on September 8, 2003. The remaining 48,157 of these shares vest in equal installments on the last day of each quarterly period thereafter over four years.

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Fiscal Year-End Option Values

      The following table sets forth information for each of the named executive officers regarding the number of shares subject to both exercisable and unexercisable stock options, as well as the value of unexercisable in-the-money options, as of December 31, 2003. There was no public trading market for our common stock as of December 31, 2003. Accordingly, the value of the unexercised in-the-money options at fiscal year-end has been calculated by determining the difference between the exercise price per share and the fair market value of our common stock at fiscal year end, as determined by our board of directors. None of the named executive officers exercised options during the fiscal year ended December 31, 2003.

                                 
Number of
Securities Underlying Value of Unexercised
Unexercised Options In-The-Money Options
at December 31, 2003 at December 31, 2003


Name Exercisable Unexercisable Exercisable Unexercisable





John M. Maraganore, Ph.D. 
    151,496       265,872     $ 290,721     $ 510,209  
Thomas R. Ulich, M.D. 
          157,894             303,000  
Vincent J. Miles, Ph.D. 
          78,947             151,500  
John G. Conley
                       

Employment Arrangements

      We have entered into letter agreements with Dr. Maraganore, Dr. Ulich, Dr. Miles and Mr. Greene regarding their employment with us.

  •  Dr. Maraganore’s agreement provides that, if he is employed upon a change in control of Alnylam, all options held by Dr. Maraganore will vest and become immediately exercisable. In addition, Dr. Maraganore’s agreement provided for the issuance to him of an option to purchase 96,315 shares of our common stock, 48,157 of which would vest if and when we entered into a significant strategic alliance and the remaining 48,157 of which would vest in equal installments on the last day of each quarterly period thereafter over four years. Upon execution on September 8, 2003 of our collaboration agreement with Merck, which our board of directors deemed to be a significant strategic alliance, the option vested as to the initial 48,157 shares and quarterly vesting for the remaining shares commenced.
 
  •  Dr. Ulich’s agreement provides that if he is terminated without cause prior to June 30, 2005, we will enter into a consulting agreement with Dr. Ulich and continue to pay him his base salary for twelve months at the rate in effect at the time of his termination.
 
  •  Dr. Miles’ agreement provides that, if we enter into a strategic alliance, other than our collaboration with Merck, within 18 months of the date Dr. Miles began his employment with us and such alliance provides us with at least $10 million of cash flow, we will issue Dr. Miles a stock option to purchase 26,315 shares of our common stock.
 
  •  Mr. Greene’s agreement provides that, if he is employed upon a change in control of Alnylam, all options held by Mr. Greene will vest and become immediately exercisable. In addition, if we terminate his employment without cause during the first 12 months of his employment, we will pay Mr. Greene six months severance based on his base salary in effect at the time of the termination of his employment.

      Each executive officer has signed a nondisclosure, invention and non-competition agreement providing for the protection of our confidential information and ownership of intellectual property developed by such executive officer and a one-year non-compete provision.

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Employee Benefit Plans

2002 Employee, Director and Consultant Stock Plan, 2003 Employee, Director and Consultant Stock Plan and 2004 Stock Incentive Plan

      Our 2002 employee, director and consultant stock plan, or 2002 plan, was initially adopted in November 2002. Our 2003 employee director and consultant stock plan, or 2003 plan, was initially adopted in September 2003. As of April 30, 2004, an aggregate of 2,451,315 shares of common stock were authorized for issuance under the 2002 plan and 2003 plan, 1,987,167 of which were subject to outstanding options at a weighted average exercise price of $0.63 per share, and 267,684 of which were available for future grant. However, we do not intend to make any further grants under the 2002 plan or the 2003 plan following the completion of this offering.

      Our 2004 stock incentive plan, or 2004 plan, was initially adopted by our board of directors in March 2004 and by our stockholders in May 2004 and, upon adoption, 1,578,947 shares of common stock were authorized for issuance under the 2004 plan. Additional shares of common stock may be authorized for issuance under the 2004 plan upon the expiration, termination, cancellation or repurchase of existing awards under the 2002 plan and 2003 plan. The exact number of shares that can be added to the 2004 plan equals the sum of the number of shares reserved for issuance under the 2002 plan and 2003 plan that remain available for grant immediately prior to the closing of this offering, plus the number of shares subject to awards under the 2002 plan and 2003 plan that have expired or terminated or we have repurchased. In addition, the 2004 plan provides for an annual increase in the number of shares available for issuance under the 2004 plan equal to the lesser of 2,631,578 shares of our common stock, 5% of our outstanding shares or an amount determined by the board.

      All of our plans provide for the grant of options intended to qualify as incentive stock options under Section 422 of the Internal Revenue Code, non-statutory stock options and restricted stock awards.

      Our employees, officers, directors, consultants and advisors are eligible to receive awards under the plans. Under present law, however, incentive stock options may only be granted to employees, including officers.

      Optionees receive the right to purchase a specified number of shares of common stock at a specified option price and subject to any other terms and conditions specified in connection with the option grant at an exercise price equal to or greater than the fair market value of our common stock on the date of grant. Under present law, incentive stock options and options intended to qualify as performance-based compensation under Section 162(m) of the Internal Revenue Code may not be granted to optionees holding more than 10% of the voting power of all shares of our capital stock at an exercise price less than 110% of the fair market value of our common stock on the date of grant. The plans permit our board of directors to determine how optionees may pay the exercise price of their options, including through payment by cash, check, surrender to us of shares of common stock owned for at least six months or by any combination of the permitted forms of payment. In addition, at the discretion of the board of directors, under the 2002 plan and the 2003 plan, options may be exercised in accordance with a cashless exercise program established with a brokerage service and under the 2004 plan they may be exercised by delivery to us of an irrevocable undertaking of a creditworthy broker to promptly deliver the exercise price to us.

      The compensation committee of our board of directors administers the plans. The compensation committee has the authority to grant awards, including awards to executive officers, and to adopt, amend and repeal the administrative rules, guidelines and practices relating to the plans of and to interpret the provisions of the plans. In addition, our board of directors may delegate authority under the 2004 plan to one or more of our executive officers. Subject to any applicable limitations contained in the plans, our compensation committee, or if applicable, one or more executive officers to whom authority has been granted under the 2004 plan, selects the recipients of awards and determines:

  •  the number of shares of common stock covered by options and the dates upon which such option become exercisable;
 
  •  the exercise price of options;

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  •  the duration of options;
 
  •  the conditions and limitations applicable to the exercise of each option; and
 
  •  the number of shares of common stock subject to any restricted stock award and the terms and conditions of such awards.

      Each of our plans will be effective for ten years following adoption, unless previously terminated. We do not intend to grant any further options or awards under the 2002 plan or 2003 plan upon the completion of this offering, but the vesting and effectiveness of awards previously granted will continue. Pursuant to its terms, no awards may be granted under the 2004 plan after March 29, 2014, but the vesting and effectiveness of awards previously granted may extend beyond that date.

      Our compensation committee may at any time modify or amend the plans, except that:

  •  under the 2002 plan and the 2003 plan, if the compensation committee determines such amendment requires shareholder approval, the amendment shall be subject to obtaining such shareholder approval; and
 
  •  under the 2004 plan, no award granted under the plan intended to comply with Section 162(m) shall, after the date of such amendment, become exercisable, realizable or vested, as applicable to such award, unless such amendment is approved by our stockholders as required by Section 162(m).

      The 2002 plan, 2003 plan and 2004 plan each provides that in the event of a merger or other acquisition event, the compensation committee is authorized, in its discretion, to take one or more of the following actions:

  •  provide for outstanding options or other awards to be assumed or substituted for by the acquiring or succeeding entity;
 
  •  provide that unexercised options or other awards will become exercisable in full and will terminate immediately prior to the consummation of such transaction unless previously exercised;
 
  •  in the case of the 2004 plan, provide that outstanding awards shall become realizable or deliverable, or restrictions applicable to an award shall lapse;
 
  •  provide for per share cash payment to the optionees equal to, in the case of the 2002 plan and the 2003 plan, the fair market value per share of such options or other awards less the exercise price per share of such option or other award, and, in the case of the 2004 plan, the cash per share received by the holders of common stock less the exercise price per share of such option or other award; or
 
  •  provide that, immediately prior to such transaction, all or a portion of the unexercised options will become exercisable in full; or
 
  •  in the case of the 2004 plan, provide that, in connection with a liquidation or dissolution of Alnylam, awards shall convert into the right to receive liquidation proceeds.

      Our rights under the terms of outstanding restricted stock granted under the 2004 plan will inure to the benefit of the surviving or succeeding entity and will continue to apply to any cash or other property into which shares were convertible as a result of such transaction.

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2004 Employee Stock Purchase Plan

      Our 2004 employee stock purchase plan, or 2004 ESPP, was adopted by our board of directors in March 2004 and approved by our stockholders in May 2004. The 2004 ESPP will become effective upon completion of this offering and authorizes the issuance of up to a total of 315,789 shares of our common stock to participating employees.

      All of our employees, including our directors who are employees, who meet the following criteria are eligible to participate in the purchase plan if:

  •  such person is employed for more than 20 hours per week and for more than five months in a calendar year;
 
  •  such person is employed for at least six months prior to enrolling in the 2004 ESPP;
 
  •  such person is employed on the first day of the applicable offering period under the 2004 ESPP; and
 
  •  in the case of an executive officer, such person is not considered a “highly compensated individual” under Section 414(q) of the Internal Revenue Code.

      Employees who would immediately after the grant own 5% or more of the total combined voting power or value of our stock are not eligible to participate in the purchase plan.

      We will make one or more offerings to our employees to purchase stock under the 2004 ESPP. Our first offering commencement date will begin on the later of November 1, 2004 or the first date on which trading of our common stock commences on the NASDAQ National Market in connection with this offering. Subsequent offerings will begin each November 1 (or the first business day thereafter), unless otherwise determined by our board of directors. Each offering commencement date will begin a twelve-month period, unless otherwise determined by our board of directors, during which payroll deductions will be made and held for the purchase of our common stock at the end of the purchase plan period.

      On the first day of a designated payroll deduction period, or offering period, we will grant to each eligible employee who has elected to participate in the purchase plan an option to purchase shares of our common stock. The employee may authorize up to a maximum of 15% of his or her base pay to be deducted by us during the offering period. On the last day of the offering period, the employee is deemed to have exercised the option, at the option exercise price, to the extent of accumulated payroll deductions. Under the terms of the purchase plan, the option exercise price is an amount equal to 85% of the closing price, as defined in the purchase plan, per share of our common stock on either the first day or the last day of the offering period, whichever is lower. In no event may an employee purchase in any one offering period a number of shares that exceeds the number of shares determined by dividing (a) the product of $2,083 and the number of full months in the offering period by (b) the closing price of a share of our common stock on the commencement date of the offering period. Our board of directors may, in its discretion, choose an offering period of 12 months or less for each offering and may choose a different offering period for each offering.

      An employee who is not a participant on the last day of the offering period is not entitled to exercise any option, and the employee’s accumulated payroll deductions will be refunded. An employee’s rights under the purchase plan terminate upon voluntary withdrawal from the purchase plan at any time, or when the employee ceases employment for any reason, except that upon termination of employment because of death, the employee’s beneficiary has certain rights to elect to exercise the option to purchase the shares that the accumulated payroll deductions in the employee’s account would purchase at the date of death.

      Because the participation in the purchase plan is voluntary, we cannot now determine the number of shares of our common stock to be purchased by any particular current executive officer, by all current executive officers as a group or by non-executive employees as a group.

401(k) Plan

      Our employee savings plan is qualified under Section 401 of the Internal Revenue Code. Our employees may elect to reduce their current compensation by up to the statutorily prescribed annual limit and have the amount of such reduction contributed to the 401(k) plan. We may make matching or additional contributions to the 401(k) plan in amounts to be determined annually by our board of directors.

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CERTAIN RELATIONSHIPS AND RELATED PARTY TRANSACTIONS

      Since our incorporation, we have engaged in the following transactions with our directors, officers and holders of more than five percent of our voting securities.

Preferred Stock Issuances

Issuance of Series A Convertible Preferred Stock

      On July 30, 2003 and July 31, 2003, we sold an aggregate of 3,000,010 shares of Series A convertible preferred stock at a price per share of $1.00 for an aggregate purchase price of $3,000,010. All shares of our Series A convertible preferred stock will be automatically converted into 1,578,949 shares of our common stock upon completion of this offering. All of these 3,000,010 shares were sold to the following holders of more than five percent of our voting securities:

                 
Shares of Series A
Convertible
Name Preferred Stock Purchase Price



Polaris Venture Partners(1)
    1,000,010     $ 1,000,010  
Abingworth Bioventures(2)
    1,000,000       1,000,000  
Cardinal Partners(3)
    1,000,000       1,000,000  
     
     
 
Total
    3,000,010     $ 3,000,010  
     
     
 

(1)  Consists of 959,955 shares held by Polaris Venture Partners III, L.P., 24,925 shares held by Polaris Venture Partners Entrepreneurs Fund III, L.P. and 15,130 shares sold to Polaris Venture Partners Founders Fund III, L.P. Christoph H. Westphal, M.D., Ph.D., a director of Alnylam, is a member of Polaris Venture Management Co. III, LLC, the General Partner of these Polaris entities.
 
(2)  Consists of 502,000 shares held by Abingworth Bioventures III A, L.P., 306,440 shares held by Abingworth Bioventures III B, L.P., 183,560 shares held by Abingworth Bioventures III C, L.P. and 8,000 shares held by Abingworth Bioventures Executives III, L.P. John E. Berriman, a director of Alnylam, is a Director of Abingworth Management Limited, the Manager of these Abingworth Bioventures entities.
 
(3) Consists of 1,000,000 shares held by CHP II, L.P. John K. Clarke, the Chairman of our board of directors, is the Managing General Partner of CHP II Management, LLC, the General Partner of CHP II, L.P.

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Issuance of Series B Convertible Preferred Stock

      On July 30, 2003 and July 31, 2003, we sold an aggregate of 16,561,845 shares of Series B convertible preferred stock at a price per share of $2.50 for an aggregate purchase price of $41,404,612. All shares of our Series B convertible preferred stock will be automatically converted into 8,716,743 shares of our common stock upon completion of this offering. Of these 16,561,845 shares, an aggregate of 15,580,000 shares were sold to the following directors, officers and holders of more than five percent of our voting securities:

                 
Shares of Series B
Convertible
Name Preferred Stock Purchase Price



Polaris Venture Partners(1)
    3,640,000     $ 9,100,000  
Arch Venture Fund(2)
    3,300,000       8,250,000  
Atlas Venture(3)
    3,300,000       8,250,000  
Abingworth BioVentures(4)
    2,760,000       6,900,000  
Cardinal Partners(5)
    2,440,000       6,100,000  
Paul R. Schimmel, Ph.D. 
    60,000       150,000  
Phillip A. Sharp, Ph.D. 
    60,000       150,000  
John G. Conley
    20,000       50,000  
     
     
 
Total
    15,580,000     $ 38,950,000  
     
     
 

(1)  Consists of 3,494,200 shares held by Polaris Venture Partners III, L.P., 90,728 shares held by Polaris Venture Partners Entrepreneurs Fund III, L.P. and 55,072 shares held by Polaris Venture Partners Founders Fund III, L.P. Christoph H. Westphal, M.D., Ph.D., a director of Alnylam, is a member of Polaris Venture Management Co. III, LLC, the General Partner of these Polaris entities.
 
(2)  Consists of 3,278,220 shares held by Arch Venture Fund V, L.P. and 21,780 shares held by Arch V Entrepreneurs Fund, L.P.
 
(3)  Consists of 1,043,414 shares held by Atlas Venture Fund V, L.P., 129,609 shares held by Atlas Venture Parallel Fund V-A, C.V., 129,609 shares held by Atlas Venture Parallel Fund V-B, C.V., 17,368 shares held by Atlas Venture Entrepreneur Fund V, L.P., 1,895,164 shares held by Atlas Venture Fund VI, L.P., 50,135 shares held by Atlas Venture Entrepreneurs Fund VI, L.P. and 34,701 shares held by Atlas Venture Fund VI GmbH & Co. KG. Peter Barrett, Ph.D., a director of Alnylam, is a Senior Partner of Atlas Venture.
 
(4)  Consists of 1,385,520 shares held by Abingworth Bioventures III A, L.P., 845,774 shares held by Abingworth Bioventures III B, L.P., 506,626 shares held by Abingworth Bioventures III C, L.P. and 22,080 shares held by Abingworth Bioventures Executives III, L.P. John E. Berriman, a director of Alnylam, is a partner of Abingworth Management Limited, the Manager of these Abingworth entities.
 
(5)  Consists of 2,440,000 shares held by CHP II, L.P. John K. Clarke, the Chairman of our board of directors is Managing General Partner of CHP II Management, LLC, the General Partner of CHP II, L.P.

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Issuance of Series C Convertible Preferred Stock.

      On September 8, 2003 and October 9, 2003, we sold an aggregate of 1,504,825 shares of Series C convertible preferred stock at a price per share of $5.00 for an aggregate purchase price of $7,524,125. All shares of our Series C convertible preferred stock will be automatically converted into 792,004 shares of our common stock upon completion of this offering. Of these 1,504,825 shares, an aggregate of 504,825 shares were sold to the following holders of more than five percent of our voting securities:

                 
Shares of Series C
Convertible
Name Preferred Stock Purchase Price



Polaris Venture Partners(1)
    129,998     $ 649,990  
Abingworth BioVentures(2)
    103,972       519,860  
Cardinal Partners(3)
    92,803       464,015  
Arch Venture Fund(4)
    89,026       445,130  
Atlas Venture(5)
    89,026       445,130  
     
     
 
Total
    504,825     $ 2,524,125  
     
     
 

(1)  Consists of 124,791 shares held by Polaris Venture Partners III, L.P., 3,240 shares held by Polaris Venture Partners Entrepreneurs Fund III, L.P. and 1,967 shares held by Polaris Venture Partners Founders Fund III, L.P. Christoph H. Westphal, M.D., Ph.D., a director of Alnylam, is a member of Polaris Venture Management Co. III, LLC, the General Partner of these Polaris entities.
 
(2)  Consists of 52,194 shares held by Abingworth Bioventures III A, L.P., 31,861 shares held by Abingworth Bioventures III B, L.P., 19,085 shares held by Abingworth Bioventures III C, L.P. and 832 shares held by Abingworth Bioventures Executives III, L.P. John E. Berriman, a director of Alnylam, is a partner of Abingworth Management Limited, the Manager of these Abingworth entities.
 
(3) Consists of 92,803 shares held by CHP II, L.P. John K. Clarke, the Chairman of our board of directors, is Managing General Partner of CHP II Management, LLC, the General Partner of CHP II, L.P.
 
(4) Consists of 88,438 shares held by Arch Venture Fund V, L.P. and 588 shares held by Arch V Entrepreneurs Fund, L.P.
 
(5)  Consists of 28,149 shares sold to Atlas Ventures Fund V, L.P., 3,496 shares held by Atlas Venture Parallel Fund V-A, C.V., 3,496 shares held by Atlas Venture Parallel Fund V-B, C.V., 469 shares held by Atlas Venture Entrepreneurs Fund V, L.P., 50,927 shares held by Atlas Venture Fund VI, L.P., 1,557 shares held by Atlas Venture Entrepreneurs Fund VI, L.P. and 932 shares held by Atlas Venture Fund VI GmbH & Co. KG. Peter Barrett, Ph.D., a director of Alnylam, is a Senior Partner of Atlas Venture.

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Registration Rights

      The holders of 11,964,889 shares of our common stock are entitled to require us to register their shares under the Securities Act. The holders of warrants to purchase 65,787 shares of our common stock will be entitled to include such shares in registration statements that we may file in the future. These rights are provided under the terms of registration rights agreements between us and these holders. These holders include the following directors, officers and holders of more than five percent of our voting securities and their affiliates:

         
Number of
Name Shares


Polaris Venture Partners
    2,510,529  
Abingworth BioVentures
    2,033,669  
Arch Venture Fund
    1,783,697  
Atlas Venture
    1,783,695  
Cardinal Partners
    1,859,370  
Paul R. Schimmel, Ph.D. 
    31,578  
Phillip A. Sharp, Ph.D. 
    31,578  
     
 
Total
    10,034,116  
     
 

      The holders of registration rights in connection with this offering have waived their right to participate in this offering.

Other Considerations

      We have adopted a policy providing that all material transactions between us and our officers, directors and other affiliates must be:

  •  approved by a majority of the members of our board of directors and by a majority of the disinterested members of our board of directors; and
 
  •  on terms no less favorable to us than those that we believe could be obtained from unaffiliated third parties.

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PRINCIPAL STOCKHOLDERS

      The following table sets forth information regarding beneficial ownership of our common stock as of March 31, 2004 by:

  •  each person, or group of affiliated persons, known to us to be the beneficial owner of more than 5% of the outstanding shares of our common stock;
 
  •  each of our directors and the named executive officers; and
 
  •  all of our directors and executive officers as a group.

      Beneficial ownership is determined in accordance with the rules of the SEC, and includes voting or investment power with respect to shares. Shares of common stock issuable under stock options that are exercisable within 60 days after March 31, 2004 are deemed outstanding for the purpose of computing the percentage ownership of the person holding the options but are not deemed outstanding for the purpose of computing the percentage ownership of any other person.

      Unless otherwise indicated below, to our knowledge, all persons named in the table have sole voting and investment power with respect to their shares of common stock, except to the extent authority is shared by spouses under community property laws. The percentage of common stock outstanding reflects the conversion, upon the closing of this offering, of all outstanding shares of convertible preferred stock into an aggregate of 11,964,889 shares of common stock. The number of shares of common stock deemed outstanding after this offering includes the 5,000,000 shares of common stock being offered for sale in this offering but assumes no exercise of the underwriters’ over-allotment option.

                                 
Number of Securities
Beneficially Owned Percentage Owned
Prior to Offering

Before the After the
Name and Address of Beneficial Owner(1) Stock Options(2) Offering Offering





Holders of more than 5% of our voting securities
                               
Polaris Venture Partners(3)
    2,510,529             17.6 %     13.0 %
Abingworth BioVentures(4)
    2,083,163             14.6       10.8  
Cardinal Partners(5)
    1,859,370             13.0       9.6  
Arch Venture Fund(6)
    1,783,697             12.5       9.3  
Atlas Venture(7)
    1,783,695             12.5       9.3  
Directors and Named Executive Officers
                               
John M. Maraganore, Ph.D.(8)
          279,835       1.9       1.4  
Peter Barrett, Ph.D.(7)
    1,783,695             12.5       9.3  
John E. Berriman(4)
    2,083,163             14.6       10.8  
John K. Clarke(5)
    1,859,370             13.0       9.6  
Paul R. Schimmel, Ph.D. 
    237,893             1.7       1.2  
Phillip A. Sharp, Ph.D. 
    264,911             1.8       1.3  
Kevin P. Starr
                       
Christoph H. Westphal, M.D., Ph.D.(3)
    2,510,529             17.6       13.0  
Vincent J. Miles, Ph.D. 
                       
Thomas R. Ulich, M.D. 
                       
John G. Conley
    117,104             *       *  
All current executive officers and directors as a group (11 individuals)(8)
    8,792,192       279,835       62.3 %     46.4 %

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  *   Represents beneficial ownership of less than one percent of common stock.

(1)  Unless otherwise indicated, the address of each shareholder is c/o Alnylam Pharmaceuticals, Inc., 300 Third Street, Cambridge, MA 02142.
 
(2)  All stock options granted by Alnylam prior to the completion of this offering were subject to a right of early exercise, pursuant to which an optionee could exercise unvested stock options for shares of restricted stock. However, for purposes of this table, options that will not vest within 60 days after March 31, 2004 have not been deemed exercisable or outstanding.
 
(3)  Consists of 2,409,971 shares held by Polaris Venture Partners III, L.P., 62,575 shares held by Polaris Venture Partners Entrepreneurs Fund III, L.P. and 37,983 shares held by Polaris Venture Partners Founders Fund III., L.P.

North Star Ventures directly or indirectly provides investment advisory services to various venture capital funds, including Polaris Venture Partners III, Polaris Entrepreneurs Fund III and Polaris Founders Fund III. The respective General Partners of these funds exercise sole voting and investment power with respect to the shares held by such funds.

The members of North Star Ventures are members of Polaris Venture Management Co. III, LLC, the General Partner of Polaris Venture Partners III, Polaris Entrepreneurs Fund III and Polaris Founders Fund III. As members of these funds, they may be deemed to share voting and investment powers for the shares held by the funds. These principals disclaim beneficial ownership of all such shares except to the extent of their proportionate pecuniary interests in such shares.

Christoph H. Westphal, M.D., Ph.D., a director of Alnylam, is a member of Polaris Venture Management Co. III, LLC, the General Partner of Polaris Venture Partners III, Polaris Entrepreneurs Fund III and Polaris Founders Fund III. As a member of these funds, he may be deemed to share voting and investment powers with respect to the shares held by these funds except to the extent of his proportionate pecuniary interest therein.

(4)  Consists of 1,045,749 shares held by Abingworth Bioventures III A, L.P., 638,359 shares held by Abingworth Bioventures III B, L.P., 382,391 shares held by Abingworth Bioventures III C, L.P. and 16,664 shares held by Abingworth Bioventures Executives III, L.P. John E. Berriman, a director of Alnylam, is a partner of Abingworth Management Limited, the Manager of the other Abingworth entities listed in this footnote.
 
(5)  Consists of 1,859,370 shares held by CHP II, L.P. John K. Clarke, the Chairman of our board of directors, is the Managing General Partner of CHP II Management, LLC, the General Partner of CHP II, L.P. Mr. Clarke, together with the other general partners of CHP II Management LLC, share voting power and investment control with respect to the shares held by CHP II, L.P. Mr. Clarke may be deemed to beneficially own the shares held by CHP II, L.P. although he disclaims beneficial ownership except to the extent of his proportionate partnership interest therein.
 
(6)  Consists of 1,771,925 shares held by Arch Venture Fund V, L.P. and 11,772 shares held by Arch V Entrepreneurs Fund, L.P.
 
(7)  Consists of 563,980 shares held by Atlas Venture Fund V, L.P., 70,055 shares held by Atlas Venture Parallel Fund V-A, C.V., 70,055 shares held by Atlas Venture Parallel Fund V-B, C.V., 9,387 shares held by Atlas Venture Entrepreneur Fund V, L.P., 1,024,258 shares held by Atlas Venture Fund VI, L.P., 27,206 shares held by Atlas Venture Entrepreneur Fund VI, L.P. and 18,754 shares held by Atlas Venture Fund VI GmbH & Co. KG. Peter Barrett, Ph.D., a director of Alnylam, is a Senior Partner of Atlas Venture.
 
(8)  Includes 105,263 shares subject to an option issued to Dr. Maraganore that will vest in full upon the consummation of this offering.

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DESCRIPTION OF CAPITAL STOCK

      The following description of our capital stock and provisions of our restated certificate of incorporation and amended and restated bylaws are summaries and are qualified by reference to the restated certificate of incorporation and the amended and restated bylaws that will become effective upon closing of this offering. Copies of these documents have been filed with the SEC as exhibits to our registration statement, of which this prospectus forms a part. The descriptions of the common stock and preferred stock reflect changes to our capital structure that will occur upon the closing of this offering.

      Upon the completion of this offering, our authorized capital stock will consist of 125,000,000 shares of common stock, par value $0.01 per share, and 5,000,000 shares of preferred stock, par value $0.01 per share, all of which shares of preferred stock will be undesignated. Our board of directors may establish the rights and preferences of the preferred stock from time to time. As of March 31, 2004, after giving effect to the conversion of all outstanding shares of convertible preferred stock into shares of common stock, there were 14,283,309 shares of common stock issued and outstanding. As of March 31, 2004, there were 63 stockholders of record of our capital stock.

Common Stock

      Holders of common stock are entitled to one vote for each share held on all matters submitted to a vote of stockholders and do not have cumulative voting rights. Accordingly, holders of a majority of the shares of common stock entitled to vote in any election of directors may elect all of the directors standing for election. Holders of common stock are entitled to receive proportionately any dividends as may be declared by our board of directors, subject to any preferential dividend rights of outstanding preferred stock. Upon our liquidation, dissolution or winding up, the holders of common stock are entitled to receive proportionately our net assets available after the payment of all debts and other liabilities and subject to the prior rights of any outstanding preferred stock. Holders of common stock have no preemptive, subscription, redemption or conversion rights. Our outstanding shares of common stock are, and the shares offered by us in this offering will be, when issued and paid for, fully paid and nonassessable. The rights, preferences and privileges of holders of common stock are subject to, and may be adversely affected by, the rights of the holders of shares of any series of preferred stock that we may designate and issue in the future.

Preferred Stock

      Under the terms of our restated certificate of incorporation, our board of directors is authorized to issue shares of preferred stock in one or more series without stockholder approval. Our board of directors has the discretion to determine the rights, preferences, privileges and restrictions, including voting rights, dividend rights, conversion rights, redemption privileges and liquidation preferences, of each series of preferred stock.

      The purpose of authorizing our board of directors to issue preferred stock and determine its right and preferences is to eliminate delays associated with a stockholder vote on specific issuances. The issuance of preferred stock, while providing flexibility in connection with possible future acquisitions and other corporate purposes, will affect, and may adversely affect, the rights of holders of any preferred stock that may be issued in the future. It is not possible to state the actual effect of the issuance of any shares of preferred stock on the rights of holders of common stock until the board of directors determines the specific rights attached to that preferred stock. The effects of issuing preferred stock could include one or more of the following:

  •  restricting dividends on the common stock;
 
  •  diluting the voting power of the common stock;
 
  •  impairing the liquidation rights of the common stock; or
 
  •  delaying or preventing changes in control or management of Alnylam.

      We have no present plans to issue any shares of preferred stock.

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Warrants

      As of March 31, 2004, Silicon Valley Bancshares held a warrant to purchase an aggregate of 13,157 shares of common stock at an exercise price of $4.75 per share. This warrant expires on December 18, 2012. In addition, as of March 31, 2004, Lighthouse Capital Partners V, L.P. and a related entity held warrants to purchase an aggregate of 52,630 shares of common stock at an exercise price of $9.50 per share. These warrants expire on March 30, 2011. The holders of these warrants have registration rights that are outlined below under the heading “Registration Rights.”

Registration Rights

      The holders of 11,964,889 shares of common stock, after giving effect to the conversion of outstanding convertible preferred stock into shares of common stock upon completion of this offering, have rights to require us to file registration statements under the Securities Act or to include their shares in registration statements that we may file in the future for ourselves or other stockholders. The holders of warrants to purchase 65,787 shares of our common stock will be entitled to include shares issued upon exercise of the warrants in registration statements that we may file in the future. The holders of registration rights in connection with this offering have waived their right to participate in this offering.

      At any time after twelve months after the closing of this offering, holders of at least 33% of the shares of our common stock having registration rights may demand that we register all or a portion of their common stock for sale under the Securities Act. We are required to effect only two of these registrations. However, if at any time we become eligible to file a registration statement on Form S-3, or any successor form, holders of registration rights may make unlimited requests for us to effect a registration on such forms of their common stock having an aggregate offering price of at least $3,000,000.

      In addition, if at any time after this offering we register any shares of common stock, either for our own account or for the account of other security holders, the holders of registration rights are entitled to notice of the registration and to include all or a portion of their common stock in the registration. A holder’s right to demand or include shares in a registration is subject to the right of the underwriters to limit the number of shares included in the offering.

Anti-Takeover Provisions of Delaware Law, our Restated Certificate of Incorporation and our Amended and Restated Bylaws

      We are subject to the provisions of Section 203 of the General Corporation Law of Delaware. Subject to certain exceptions, Section 203 prohibits a publicly held Delaware corporation from engaging in a business combination with an interested stockholder for a period of three years after the person became an interested stockholder, unless the interested stockholder attained such status with the approval of our board of directors or the business combination is approved in a prescribed manner. A business combination includes, among other things, a merger or consolidation involving us and the interested stockholder and the sale of more than 10% of our assets. In general, an interested stockholder is any entity or person beneficially owning 15% or more of our outstanding voting stock and any entity or person affiliated with or controlling or controlled by such entity or person.

      Our restated certificate of incorporation and our amended and restated bylaws divide our board of directors into three classes with staggered three-year terms. In addition, our restated certificate of incorporation provides that directors may be removed only for cause by the affirmative vote of the holders of 75% of our shares of capital stock entitled to vote. Under our restated certificate of incorporation, any vacancy on our board of directors, including a vacancy resulting from an enlargement of our board of directors, may only be filled by vote of a majority of our directors then in office. The classification of our board of directors and the limitations on the removal of directors and filling of vacancies could make it more difficult for a third party to acquire, or discourage a third party from acquiring, control of us.

      Our restated certificate of incorporation and our amended and restated bylaws also provide that any action required or permitted to be taken by our stockholders at an annual meeting or special meeting of

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stockholders may only be taken if it is properly brought before the meeting and may not be taken by written action in lieu of a meeting. Our restated certificate of incorporation and our amended and restated bylaws further provide that, except as otherwise required by law, special meetings of the stockholders may only be called by the chairman of the board, chief executive officer or our board of directors. In addition, our amended and restated bylaws establish an advance notice procedure for stockholder proposals to be brought before an annual meeting of stockholders, including proposed nominations of persons for election to the board of directors. Stockholders at an annual meeting may only consider proposals or nominations specified in the notice of meeting or brought before the meeting by or at the direction of the board of directors or by a stockholder of record on the record date for the meeting, who is entitled to vote at the meeting and who has delivered timely written notice in proper form to our secretary of the stockholder’s intention to bring such business before the meeting. These provisions could have the effect of delaying until the next stockholders’ meeting stockholder actions that are favored by the holders of a majority of our outstanding voting securities. These provisions may also discourage a third party from making a tender offer for our common stock, because even if it acquired a majority of our outstanding voting securities, the third party would be able to take action as a stockholder, such as electing new directors or approving a merger, only at a duly called stockholders’ meeting, and not by written consent.

      The General Corporation Law of Delaware provides generally that the affirmative vote of a majority of the shares entitled to vote on any matter is required to amend a corporation’s certificate of incorporation or bylaws, unless a corporation’s certificate of incorporation or bylaws, as the case may be, requires a greater percentage. Our restated certificate of incorporation and amended and restated bylaws require the affirmative vote of the holders of at least 75% of the shares of our capital stock issued and outstanding and entitled to vote to amend or repeal any of the provisions described in the prior two paragraphs.

Limitation of Liability and Indemnification

      Our restated certificate of incorporation contains provisions permitted under the General Corporation Law of Delaware relating to the liability of directors. The provisions eliminate a director’s liability for monetary damages for a breach of fiduciary duty, except in circumstances involving wrongful acts, such as the breach of a director’s duty of loyalty or acts or omissions that involve intentional misconduct or a knowing violation of law. Further, our restated certificate of incorporation contains provisions to indemnify our directors and officers to the fullest extent permitted by the General Corporation Law of Delaware.

Transfer Agent and Registrar

      The transfer agent and registrar for our common stock is EquiServe Trust Company.

NASDAQ National Market

      We have applied for the quotation of our common stock on the NASDAQ National Market under the symbol “ALNY.”

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SHARES ELIGIBLE FOR FUTURE SALE

      Sales of substantial amounts of our common stock in the public market could adversely affect prevailing market prices of our common stock. Furthermore, since some shares of common stock will not be available for sale shortly after this offering because of the contractual and legal restrictions on resale described below, sales of substantial amounts of common stock in the public market after these restrictions lapse could adversely affect the prevailing market price and our ability to raise equity capital in the future.

      Prior to this offering, there has been no public market for our common stock. Upon completion of this offering, we will have outstanding an aggregate of 19,283,309 shares of our common stock assuming no exercise of outstanding options or warrants. Of these shares, the 5,000,000 shares sold in this offering will be freely tradable without restrictions or further registration under the Securities Act, unless those shares are purchased by affiliates as that term is defined in Rule 144 under the Securities Act. The remaining 14,283,309 shares of common stock held by existing stockholders are restricted securities as that term is defined in Rule 144 under the Securities Act or are subject to the contractual restrictions described below. Of these remaining securities:

  •  79,943 shares which are not subject to the 180-day lock-up period described below may be sold beginning 90 days after completion of this offering;
 
  •  13,326,173 additional shares may be sold upon expiration of the 180-day lock-up period described below; and
 
  •  877,193 additional shares may be sold between 181 and 365 days after the effective date of this offering.

      Restricted securities may be sold in the public market only if registered or if they qualify for an exemption from registration under Rule 144 or 701 under the Securities Act, which rules are summarized below.

Rule 144

      In general, under Rule 144, beginning 90 days after the date of this prospectus, a person who has beneficially owned shares of our common stock for at least one year would be entitled to sell within any three-month period a number of shares that does not exceed the greater of:

  •  1% of the number of shares of common stock then outstanding, which will equal approximately 192,833 shares immediately after this offering; or
 
  •  the average weekly trading volume of the common stock on the NASDAQ National Market during the four calendar weeks preceding the filing of a notice on Form 144 with respect to the sale.

      Sales under Rule 144 are also subject to manner of sale provisions and notice requirements and to the availability of current public information about us.

Rule 144(k)

      Common stock eligible for sale under Rule 144(k) may be sold immediately upon the completion of this offering. In general, under Rule 144(k), a person may sell shares of common stock acquired from us immediately upon completion of this offering, without regard to manner of sale, the availability of public information or volume, if:

  •  the person is not our affiliate and has not been our affiliate at any time during the three months preceding such a sale; and
 
  •  the person has beneficially owned the shares proposed to be sold for at least two years, including the holding period of any prior owner other than an affiliate.

Rule 701

      In general, under Rule 701 of the Securities Act, any of our employees, consultants or advisors who purchase shares from us in connection with a qualified compensatory stock plan or other written agreement is eligible to resell those shares 90 days after the effective date of this offering in reliance on Rule 144, but without compliance with various restrictions, including the holding period, contained in Rule 144.

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Lock-up Agreements

      Our officers and directors and stockholders owning an aggregate of 14,203,366 shares of common stock have signed lock-up agreements under which they agreed not to offer, sell, pledge, contract to sell, sell short, grant any option in or otherwise dispose of, or enter into any hedging transaction with respect to, any shares of our common stock or any securities convertible into or exercisable or exchangeable for shares of our common stock beneficially owned by them, for a period ending 180 days after the date of this prospectus. The foregoing does not prohibit open market purchases and sales of our common stock by such holders after the completion of this offering and transfers or dispositions by our officers, directors and stockholders can be made sooner:

  •  with the written consent of Banc of America Securities LLC;
 
  •  as a gift or by will or intestacy;
 
  •  to immediate family members; and
 
  •  to any trust for the direct or indirect benefit of the holder or his or her immediately family.

Registration Rights

      Upon completion of this offering, the holders of 11,964,889 shares of our common stock, or their transferees, have rights to require or participate in the registration of those shares under the Securities Act. The holders of warrants to purchase 65,787 shares of our common stock will also be entitled to participate in such registration with respect to the shares of common stock issuable upon exercise of such warrants. For a detailed description of these registration rights see “Description of Capital Stock — Registration Rights”.

Stock Options

      We intend to file a registration statement under the Securities Act covering the 4,020,115 shares of common stock reserved for issuance under our 2002 plan, 2003 plan, 2004 plan and 2004 ESPP as of March 31, 2004. That registration statement is expected to become effective upon filing with the SEC. Accordingly, common stock registered under that registration statement will, subject to vesting provisions and limitations as to the volume of shares that may be sold by our affiliates under Rule 144 described above, be available for sale in the open market immediately after the 180-day lock-up period expires.

      As of March 31, 2004, options to purchase 1,942,908 shares of common stock were issued and outstanding at a weighted average exercise price of $0.61 per share. Upon the expiration of the lock-up period described above, at least 641,869 shares of common stock will be subject to vested options, based on options outstanding as of March 31, 2004.

Warrants

      Upon completion of this offering, there will be warrants outstanding to purchase 65,787 shares of common stock at a weighted average exercise price of $8.55 per share. Holders of these warrants have registration rights that are outlined above under the heading “Registration Rights.”

Effect of Sales of Shares

      Prior to this offering, there has been no public market for our common stock, and no prediction can be made as to the effect, if any, that market sales of shares of common stock or the availability of shares for sale will have on the market price of our common stock prevailing from time to time. Nevertheless, sales of significant numbers of shares of our common stock in the public market after the completion of this offering could adversely affect the market price of our common stock and could impair our future ability to raise capital through an offering of our equity securities.

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MATERIAL U.S. FEDERAL TAX CONSIDERATIONS FOR NON-U.S. HOLDERS OF OUR COMMON STOCK

      The following is a general discussion of the material U.S. federal income and estate tax considerations applicable to non-U.S. holders with respect to their ownership and disposition of shares of our common stock. This discussion is for general information only and is not tax advice. Accordingly, all prospective non-U.S. holders of our common stock should consult their own tax advisors with respect to the U.S. federal, state, local and non-U.S. tax consequences of the purchase, ownership and disposition of our common stock. In general, a non-U.S. holder means a beneficial owner of our common stock who is not for U.S. federal income tax purposes:

  •  an individual who is a citizen or resident of the U.S.;
 
  •  a corporation, or any other organization taxable as a corporation for U.S. federal tax purposes, created or organized in the U.S. or under the laws of the U.S. or of any state thereof or the District of Columbia; or
 
  •  an estate or trust, the income of which is included in gross income for U.S. federal income tax purposes regardless of its source.

      This discussion is based on current provisions of the U.S. Internal Revenue Code of 1986, as amended, existing and proposed U.S. Treasury Regulations promulgated thereunder, current administrative rulings and judicial decisions, in effect as of the date of this prospectus, all of which are subject to change or to differing interpretation, possibly with retroactive effect. Any change could alter the tax consequences to non-U.S. holders described in this prospectus. We assume in this discussion that a non-U.S. holder holds shares of our common stock as a capital asset (generally property held for investment).

      This discussion does not address all aspects of U.S. federal income and estate taxation that may be relevant to a particular non-U.S. holder in light of that non-U.S. holder’s individual circumstances nor does it address any aspects of U.S. state, local or non-U.S. taxes. This discussion also does not consider any specific facts or circumstances that may apply to a non-U.S. holder and does not address the special tax rules applicable to particular non-U.S. holders, such as:

  •  insurance companies;
 
  •  tax-exempt organizations;
 
  •  financial institutions;
 
  •  brokers or dealers in securities;
 
  •  partnerships or other pass-through entities;
 
  •  regulated investment companies;
 
  •  pension plans;
 
  •  owners of more than 5% of our common stock;
 
  •  owners that hold our common stock as part of a straddle, hedge, conversion transaction, synthetic security or other integrated investment; and
 
  •  certain U.S. expatriates.

      There can be no assurance that the Internal Revenue Service, referred to as the IRS, will not challenge one or more of the tax consequences described herein, and we have not obtained, nor do we intend to obtain, an opinion of counsel with respect to the U.S. federal income or estate tax consequences to a non-U.S. holder of the purchase, ownership, or disposition of our common stock. We urge prospective investors to consult with their own tax advisors regarding the U.S. federal, state, local and non-U.S. income and other tax considerations of acquiring, holding and disposing of shares of our common stock.

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Distributions on Our Common Stock

      We have not declared or paid distributions on our common stock since our inception and do not intend to pay any distributions on our common stock in the foreseeable future. In the event we do pay distributions on our common stock, however, these distributions generally will constitute dividends for U.S. federal income tax purposes to the extent paid from our current or accumulated earnings and profits, as determined under U.S. federal income tax principles. If a distribution exceeds our current and accumulated earnings and profits, the excess will be treated as a tax-free return of the non-U.S. holder’s investment, up to such holder’s tax basis in the common stock. Any remaining excess will be treated as capital gain, subject to the tax treatment described below in “Gain on Sale, Exchange or Other Disposition of Common Stock.”

      Dividends paid to a non-U.S. holder generally will be subject to withholding of U.S. federal income tax at a 30% rate or such lower rate as may be provided by an applicable income tax treaty between the U.S. and such holder’s country of residence. If we determine, at a time reasonably close to the date of payment of a distribution on our common stock, that the distribution will not constitute a dividend because we do not anticipate having current or accumulated earnings and profits, we intend not to withhold any U.S. federal income tax on the distribution as permitted by U.S. Treasury Regulations. If we or another withholding agent withholds tax on such a distribution, a non-U.S. holder may be entitled to a refund of the tax withheld which the non-U.S. holder may claim by filing a U.S. tax return with the IRS.

      Dividends that are treated as effectively connected with a trade or business conducted by a non-U.S. holder within the United States (and if an applicable income tax treaty so provides, are also attributable to a permanent establishment or a fixed base maintained by such non-U.S. holder) are generally exempt from the 30% withholding tax if the non-U.S. holder satisfies applicable certification and disclosure requirements. However, such U.S. effectively connected income, net of specified deductions and credits, is taxed at the same graduated U.S. federal income tax rates applicable to U.S. persons. Any U.S. effectively connected income received by a non-U.S. holder that is a corporation may also, under certain circumstances, be subject to an additional branch profits tax at a 30% rate or such lower rate as specified by an applicable income tax treaty between the United States and such holder’s country of residence.

      A non-U.S. holder of our common stock who claims the benefit of an applicable income tax treaty between the United States and such holder’s country of residence generally will be required to provide a properly executed IRS Form W-8BEN and satisfy applicable certification and other requirements. Non-U.S. holders are urged to consult their tax advisors regarding their entitlement to benefits under a relevant income tax treaty.

      A non-U.S. holder that is eligible for a reduced rate of U.S. withholding tax under an income tax treaty may obtain a refund of any excess amounts withheld by timely filing an appropriate claim with the IRS.

Gain on Sale, Exchange or Other Disposition of Our Common Stock

      In general, a non-U.S. holder will not be subject to any U.S. federal income tax or withholding tax on any gain realized upon such holder’s sale, exchange or other disposition of shares of our common stock unless:

  •  the gain is effectively connected with a U.S. trade or business (and if an applicable income tax treaty so provides, is also attributable to a permanent establishment or a fixed base maintained by such non-U.S. holder), in which case the graduated U.S. federal income tax rates applicable to U.S. persons and, if the non-U.S. holder is a foreign corporation, the additional branch profits tax described above in “Distributions on Our Common Stock” may apply;
 
  •  the non-U.S. holder is an individual who is present in the United States for 183 days or more in the taxable year of the disposition and certain other conditions are met, in which case the non-U.S. holder will be subject to a 30% tax on the net gain derived from the disposition, which may be offset by U.S. source capital losses of the non-U.S. holder, if any; or

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  •  we are or have been, at any time during the five-year period preceding such disposition (or the non-U.S. holder’s holding period if shorter) a “U.S. real property holding corporation” unless our common stock is regularly traded on an established securities market and the non-U.S. holder holds no more than 5% of our outstanding common stock, directly or indirectly. If we are determined to be a U.S. real property holding corporation and the foregoing exception does not apply, then a purchaser may withhold 10% of the proceeds payable to a non-U.S. holder from a sale of our common stock and the non-U.S. holder generally will be taxed on its net gain derived from the disposition at the graduated U.S. federal income tax rates applicable to U.S. persons and, if the non-U.S. holder is a foreign corporation, the additional branch profits tax described above in “Distributions on Our Common Stock” may apply. Generally, a corporation is a U.S. real property holding corporation only if the fair market value of its U.S. real property interests equals or exceeds 50% of the sum of the fair market value of its worldwide real property interests plus its other assets used or held for use in a trade or business. Although there can be no assurance, we do not believe that we are, or have been, a U.S. real property holding corporation, or that we are likely to become one in the future. Furthermore, no assurance can be provided that our stock will be regularly traded on an established securities market for purposes of the rules described above.

U.S. Federal Estate Tax

      Shares of our common stock that are owned or treated as owned by an individual non-U.S. holder at the time of death and certain lifetime transfers of an interest in our common stock made by such individual are considered U.S. situs assets and will be included in the individual’s gross estate for U.S. federal estate tax purposes. Such shares, therefore, may be subject to U.S. federal estate tax, unless an applicable estate tax or other treaty provides otherwise.

Backup Withholding and Information Reporting

      We must report annually to the IRS and to each non-U.S. holder the gross amount of the distributions on our common stock paid to such holder and the tax withheld, if any, with respect to such distributions. Non-U.S. holders may have to comply with specific certification procedures to establish that the holder is not a U.S. person in order to avoid backup withholding with respect to dividends on our common stock. The gross amount of dividends paid to a non-U.S. holder that fails to certify its non-U.S. holder’s status in accordance with the applicable U.S. Treasury Regulations generally will be reduced by backup withholding at the applicable rate, currently 28%. Dividends paid to non-U.S. holders subject to the U.S. withholding tax, as described above in “Distributions on Our Common Stock,” generally will be exempt from U.S. backup withholding.

      Information reporting and backup withholding will generally apply to the proceeds of a disposition of our common stock by a non-U.S. holder effected by or through the U.S. office of any broker, U.S. or foreign, unless the holder certifies its status as a non-U.S. holder and satisfies certain other requirements, or otherwise establishes an exemption. Generally, information reporting and backup withholding will not apply to a payment of disposition proceeds where the transaction is effected outside the U.S. through a non-U.S. office of a non-U.S. broker. However, for information reporting purposes, certain brokers with substantial U.S. ownership or operations generally will be treated in a manner similar to U.S. brokers. Non-U.S. holders should consult their own tax advisors regarding the application of the information reporting and backup withholding rules to them.

      Copies of information returns may be made available to the tax authorities of the country in which the non-U.S. holder resides or is incorporated under the provisions of a specific treaty or agreement.

      Backup withholding is not an additional tax. Any amounts withheld under the backup withholding rules from a payment to a non-U.S. holder can be refunded or credited against the non-U.S. holder’s U.S. federal income tax liability, if any, provided that an appropriate claim is timely filed with the IRS.

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UNDERWRITING

      We are offering the shares of common stock described in this prospectus through a number of underwriters. Banc of America Securities LLC, Citigroup Global Markets Inc., Piper Jaffray & Co. and ThinkEquity Partners LLC are the representatives of the underwriters. We have entered into a firm commitment underwriting agreement with the underwriters. Subject to the terms and conditions of the underwriting agreement, we have agreed to sell to the underwriters, and each underwriter has agreed to purchase, the number of shares of common stock listed next to its name in the following table:

           
Underwriter Number of Shares


Banc of America Securities LLC
       
Citigroup Global Markets Inc.
       
Piper Jaffray & Co. 
       
ThinkEquity Partners LLC
       
     
 
 
Total
    5,000,000  
     
 

      The underwriting agreement is subject to a number of terms and conditions and provides that the underwriters must buy all of the shares if they buy any of them. The underwriters will sell the shares to the public when and if the underwriters buy the shares from us.

      The underwriters initially will offer the shares to the public at the price specified on the cover page of this prospectus. The underwriters may allow a concession of not more than $           per share to selected dealers. The underwriters may also allow, and those dealers may re-allow, a concession of not more than $           per share to some other dealers. If all the shares are not sold at the public offering price, the underwriters may change the public offering price and the other selling terms. The common stock is offered subject to a number of conditions, including:

  •  receipt and acceptance of the common stock by the underwriters; and
 
  •  the underwriters’ right to reject orders in whole or in part.

      Over-Allotment Option. We have granted the underwriters an over-allotment option to buy up to                additional shares of our common stock at the same price per share as they are paying for the shares shown in the table above. These additional shares would cover sales of shares by the underwriters that exceed the total number of shares shown in the table above. The underwriters may exercise this option at any time within 30 days after the date of this prospectus. To the extent that the underwriters exercise this option, each underwriter will purchase additional shares from us in approximately the same proportion as it purchased the shares shown in the table above. If purchased, the additional shares will be sold by the underwriters on the same terms as those on which the other shares are sold.

      Discounts and Commissions. The following table shows the per share and total underwriting discounts and commissions to be paid to the underwriters by us. These amounts are shown assuming no exercise and full exercise of the underwriters’ option to purchase additional shares.

                   
Paid by Us

No Exercise Full Exercise


Per Share
  $       $    
     
     
 
 
Total
  $       $    
     
     
 

      We estimate that the expenses of the offering to be paid by us, not including the underwriting discounts and commissions, will be approximately $1.9 million.

      Listing. We expect our common stock to be approved for quotation on the NASDAQ National Market under the symbol “ALNY.”

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      Stabilization. In connection with this offering, the underwriters may engage in activities that stabilize, maintain or otherwise affect the price of our common stock, including:

  •  stabilizing transactions;
 
  •  short sales;
 
  •  syndicate covering transactions;
 
  •  imposition of penalty bids; and
 
  •  purchases to cover positions created by short sales.

      Stabilizing transactions consist of bids or purchases made for the purpose of preventing or retarding a decline in the market price of our common stock while this offering is in progress. Stabilizing transactions may include making short sales of our common stock, which involves the sale by the underwriters of a greater number of shares of common stock than they are required to purchase in this offering, and purchasing shares of common stock from us or in the open market to cover positions created by short sales. Short sales may be covered shorts, which are short positions in an amount not greater than the underwriters’ over-allotment option referred to above, or may be naked shorts, which are short positions in excess of that amount. Syndicate covering transactions involve purchases of our common stock in the open market after the distribution has been completed in order to cover syndicate short positions.

      The underwriters may close out any covered short position either by exercising their over-allotment option, in whole or in part, or by purchasing shares in the open market. In making this determination, the underwriters will consider, among other things, the price of shares available for purchase in the open market compared to the price at which the underwriters may purchase shares pursuant to the over-allotment option.

      A naked short position is more likely to be created if the underwriters are concerned that there may be downward pressure on the price of the common stock in the open market that could adversely affect investors who purchased shares of our common stock in this offering. To the extent that the underwriters create a naked short position, they will purchase shares in the open market to cover the position.

      The representatives also may impose a penalty bid on underwriters and dealers participating in the offering. This means that the representatives may reclaim from any syndicate member or other dealers participating in the offering the commissions and selling concessions on shares sold by them and purchased by the representatives in stabilizing or short covering transactions.

      These activities may have the effect of raising or maintaining the market price of our common stock or preventing or retarding a decline in the market price for our common stock. As a result of these activities the price of or common stock may be higher than the price that otherwise might exist in the open market. If the underwriters commence these activities, they may discontinue them at any time. The underwriters may carry out these transactions on the NASDAQ National Market, in the over-the-counter market or otherwise.

      Discretionary Accounts. The underwriters have informed us that they do not expect to make sales to accounts over which they exercise discretionary authority in excess of 5% of the shares of common stock being offered.

      IPO Pricing. Prior to this offering, there has been no public market for our common stock. The initial public offering price will be negotiated between us and the representatives of the underwriters. Among the factors to be considered in these negotiations are:

  •  the history of, and prospects for, our company and the industry in which we compete;
 
  •  our past and present financial performance;
 
  •  an assessment of our management;
 
  •  the present state of our development;
 
  •  the prospects for our future earnings;

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  •  the prevailing conditions of the applicable U.S. securities market at the time of this offering;
 
  •  market valuations of publicly traded companies that we and the representatives of the underwriters believe to be comparable to us; and
 
  •  other factors deemed relevant.

      The estimated initial public offering price range set forth on the cover of this prospectus is subject to change as a result of market conditions and other factors.

      Lock-up Agreements. We, our officers and directors and stockholders owning an aggregate of 14,203,366 shares of common stock have entered into lock-up agreements with the underwriters. Under these agreements, we and each of these persons may not, without the prior written approval of Banc of America Securities LLC, offer, sell, contact to sell or otherwise dispose of or hedge our common stock or securities convertible into or exchangeable for our common stock. These restrictions will be in effect for a period of 180 days after the date of this prospectus. At any time and without notice, Banc of America Securities LLC may, in its sole discretion, release all or some of the securities from these lock-up agreements.

      Directed Share Program. At our request, the underwriters have reserved up to 3% of the common stock being offered by this prospectus for sale to our directors, employees, business associates and related persons at the public offering price. The sales will be made by Banc of America Securities LLC through a directed share program. We do not know if these persons will choose to purchase all or any portion of these reserved shares, but any purchases they do make will reduce the number of shares available to the general public. These persons must commit to purchase no later than the close of business on the day following the date of this prospectus. Any directors, employees or other persons purchasing such reserved shares will be prohibited from disposing of or hedging such shares for a period of at least 180 days after the date of this prospectus.

      Indemnification. We will indemnify the underwriters against some liabilities, including liabilities under the Securities Act. If we are unable to provide this indemnification, we will contribute to payments the underwriters may be required to make in respect to those liabilities.

      Conflicts/ Affiliates. The underwriters and their affiliates may from time to time engage in future transactions with us and our affiliates and provide services to us and our affiliates in the ordinary course of their business for which services they may in the future receive customary fees.

      Foreign jurisdictions. Each underwriter acknowledges that it (1) has not offered or sold and, prior to the expiry of a period of six months from the closing date, will not offer or sell any shares of our common stock to persons in the United Kingdom except to persons whose ordinary activities involve them in acquiring, holding, managing or disposing of investments, as principal or agent, for the purposes of their businesses or otherwise in circumstances which have not resulted and will not result in an offer to the public in the United Kingdom within the meaning of the Public Offers of Securities Regulations 1995; (2) has only communicated or caused to be communicated and will only communicate or cause to be communicated any invitation or inducement to engage in investment activity, within the meaning of section 21 of the Financial Services and Markets Act 2000, or FSMA, received by it in connection with the issue or sale of any shares of our common stock in circumstances in which section 21(1) of the FSMA does not apply to us; and (3) has complied and will comply with all applicable provisions of the FSMA with respect to anything done by it in relation to the shares of our common stock in, from or otherwise involving the United Kingdom.

      No action has been, or will be, taken by the underwriters or us that would permit a public offering of our shares of common stock or the distribution of this document or any other offering or publicity material relating to the shares of our common stock in Germany. Our shares of common stock may only be offered and sold in Germany in accordance with the restrictions set forth in the German Securities Selling Prospectus Act ( Verkaufsprospektgesetz ).

      The shares of common stock are being offered in Switzerland on the basis of a private placement, not as a public offering. This document does not, therefore, constitute a prospectus within the meaning of the Swiss Federal Code of Obligations.

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LEGAL MATTERS

      The validity of the shares of common stock we are offering will be passed upon for us by Hale and Dorr LLP, Boston, Massachusetts. Legal matters in connection with this offering will be passed upon for the underwriters by Shearman & Sterling LLP, New York, New York.

EXPERTS

      The financial statements as of December 31, 2002 and 2003 and for the period from June 14, 2002 (date of inception) through December 31, 2002, the year ended December 31, 2003 and the cumulative period from June 14, 2002 (date of inception) through December 31, 2003 of Alnylam included in this prospectus have been so included in reliance on the report of PricewaterhouseCoopers LLP, independent accountants, given on the authority of such firm as experts in auditing and accounting.

      The financial statements as of December 31, 2001 and 2002 and for the year ended December 31, 2002 and the period from June 14, 2000 (date of inception) through December 31, 2002 of Alnylam Europe, AG included in this prospectus have been so included in reliance on the report of PricewaterhouseCoopers Gesellschaft mit beschränkter Haftung Wirtschaftsprüfungsgesellschaft, independent accountants, given on the authority of such firm as experts in auditing and accounting.

WHERE YOU CAN FIND MORE INFORMATION

      We have filed a registration statement on Form S-1 with the SEC for the common stock we are offering by this prospectus. This prospectus does not include all of the information contained in the registration statement. You should refer to the registration statement and its exhibits for additional information. Whenever we make reference in this prospectus to any of our contracts, agreements or other documents, the references are not necessarily complete and you should refer to the exhibits attached to the registration statement for copies of the actual contract, agreement or other document. When we complete this offering, we will also be required to file annual, quarterly and special reports, proxy statements and other information with the SEC.

      You can read our SEC filings, including the registration statement, over the Internet at the SEC’s web site at www.sec.gov. You may also read and copy any document we file with the SEC at its public reference facility at 450 Fifth Street, N.W., Washington, D.C. 20549. You may also obtain copies of the documents at prescribed rates by writing to the Public Reference Section of the SEC at 450 Fifth Street, N.W., Washington, D.C. 20549. Please call the SEC at 1-800-SEC-0330 for further information on the operation of the public reference facilities.

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INDEX TO FINANCIAL STATEMENTS

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Periods ended March 31, 2004 and 2003 (unaudited)

         
Page

Consolidated Financial Statements
       
Balance Sheets
    F-2  
Statements of Operations
    F-3  
Statements of Changes in Redeemable Convertible Preferred Stock and Stockholders’ Deficit
    F-4  
Statements of Cash Flows
    F-5  
Notes to Financial Statements
    F-6  

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Periods ended December 31, 2002 and 2003

         
Report of Independent Auditors
    F-16  
Consolidated Financial Statements
       
Balance Sheets
    F-17  
Statements of Operations
    F-18  
Statements of Changes in Redeemable Convertible Preferred Stock and Stockholders’ Deficit
    F-19  
Statements of Cash Flows
    F-20  
Notes to Financial Statements
    F-22  

RIBOPHARMA AG

(A Development Stage Enterprise)

Years ended December 31, 2001 and 2002

         
Report of Independent Auditors
    F-47  
Financial Statements
       
Balance Sheets
    F-48  
Statements of Operations
    F-49  
Statements of Changes in Stockholders’ Deficit
    F-50  
Statements of Cash Flows
    F-51  
Notes to Financial Statements
    F-52  

PRO FORMA FINANCIAL DATA

Year ended December 31, 2003

         
Pro Forma Financial Data
    F-60  
Unaudited Pro Forma Combined Statements of Operations
    F-61  
Notes to Unaudited Pro Forma Combined Financial Statements of Operations
    F-62  

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Balance Sheets

($ in thousands, except per share amounts)
(Unaudited)
                             
Pro Forma
December 31, March 31, March 31,
2003 2004 2004



Assets
Current assets
                       
 
Cash and cash equivalents
  $ 23,193     $ 21,612     $ 21,612  
 
Restricted cash
    373       354       354  
 
Prepaid expenses and other current assets
    623       620       620  
     
     
     
 
   
Total current assets
    24,189       22,586       22,586  
Property and equipment, net
    4,756       8,961       8,961  
Intangible assets, net
    3,878       3,760       3,760  
Restricted cash
    2,313       2,313       2,313  
Deferred financing costs
    47       1,719       1,719  
     
     
     
 
   
Total assets
  $ 35,183     $ 39,339     $ 39,339  
     
     
     
 
Liabilities, Redeemable Convertible Preferred Stock and Stockholders’ Equity (Deficit)
                       
Current liabilities
                       
 
Accounts payable
  $ 1,510     $ 3,636     $ 3,636  
 
Accrued liabilities
    1,443       4,141       4,141  
 
Current portion of note payable
    558              
 
Deferred revenue
    333       416       416  
     
     
     
 
   
Total current liabilities
    3,844       8,193       8,193  
Deferred revenue
    1,556       1,472       1,472  
Note payable, net of current portion
    1,301       1,879       1,879  
     
     
     
 
   
Total liabilities
    6,701       11,544       11,544  
     
     
     
 
Commitments and contingencies (Note 13) 
                       
Redeemable convertible preferred stock (Note 10)
    55,189       66,875        
Stockholders’ equity (deficit)
                       
 
Common stock, $0.0001 par value, 32,000,000 shares authorized as of December 31, 2003 and March 31, 2004 and, $0.01 par value, 125,000,000 shares authorized as of March 31, 2004, pro forma; and 2,251,482, 2,401,314, and 14,366,203 shares issued, and 2,251,482, 2,318,420, and 14,283,309 shares outstanding as of December 31, 2003, March 31, 2004 and March 31, 2004, pro forma
                143  
 
Additional paid-in capital
    7,416       12,525       79,257  
 
Deferred compensation
    (4,681 )     (7,741 )     (7,741 )
 
Accumulated other comprehensive income
    76       69       69  
 
Deficit accumulated in the development stage
    (29,518 )     (43,933 )     (43,933 )
     
     
     
 
   
Total stockholders’ equity (deficit)
    (26,707 )     (39,080 )     27,795  
     
     
     
 
   
Total liabilities, redeemable convertible preferred stock and stockholders’ equity (deficit)
  $ 35,183     $ 39,339     $ 39,339  
     
     
     
 

The accompanying notes are an integral part of these unaudited consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Statements of Operations

($ in thousands, except per share amounts)
(unaudited)
                             
Cumulative
from Inception
Three Months Ended, (June 14,

2002) Through
March 31, March 31, March 31,
2003 2004 2004



Revenue from research collaborators
  $     $ 134     $ 310  
     
     
     
 
Costs and expenses
                       
Research and development(1)
    1,266       10,435       26,874  
General and administrative(1)
    908       3,031       11,438  
Purchased in-process research and development
                4,609  
     
     
     
 
   
Total operating costs and expenses
    2,174       13,466       42,921  
     
     
     
 
   
Loss from operations
    (2,174 )     (13,332 )     (42,611 )
Interest income
    31       37       302  
Interest expense
    (8 )     (208 )     (335 )
Other expense
          (79 )     (107 )
     
     
     
 
Net loss
    (2,151 )     (13,582 )     (42,751 )
Accretion of redeemable convertible preferred stock
    (435 )     (1,962 )     (5,616 )
     
     
     
 
   
Net loss attributable to common stockholders
  $ (2,586 )   $ (15,544 )   $ (48,367 )
     
     
     
 
Comprehensive income (loss)
                       
Net loss
  $ (2,151 )   $ (13,582 )   $ (42,751 )
 
Foreign currency translation adjustments
          (7 )     69  
     
     
     
 
Comprehensive loss
  $ (2,151 )   $ (13,589 )   $ (42,682 )
     
     
     
 
Net loss per share
                       
Net loss per common share (basic and diluted)
  $ (5.56 )   $ (9.39 )   $ (56.57 )
     
     
     
 
Weighted average shares used to compute basic and diluted net loss per common share
    465,349       1,655,168       855,049  
     
     
     
 
Pro forma net loss per common share (basic and diluted)
          $ (1.11 )        
             
         
Shares used to compute pro forma basic and diluted net loss per common share
            12,935,145          
             
         
(1) Noncash stock-based compensation expense included in these amounts are as follows:
                       
 
Research and development
  $ 500     $ 1,724     $ 4,728  
 
General and administrative
    19       507       1,130  
     
     
     
 
   
Total stock-based compensation
  $ 519     $ 2,231     $ 5,858  
     
     
     
 

The accompanying notes are an integral part of these unaudited consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Statements of Changes in Redeemable Convertible Preferred Stock and Stockholders’ Deficit

Period from December 31, 2003 through March 31, 2004
($ in thousands, except per share amounts)
(unaudited)
                                                                         
Redeemable Convertible
Preferred Stock Common Stock Accumulated Deficit


Additional Other Accumulated in
Number of Number of Par Value Paid-In Deferred Comprehensive the Development
Shares Amount Shares $0.0001 Capital Compensation Income Stage Total









Balance at December 31, 2003
    21,066,680     $ 55,189       2,251,482     $     $ 7,416     $ (4,681 )   $ 76     $ (29,518 )   $ (26,707 )
Exercise of common stock options
                149,832             114                         114  
Accretion of beneficial conversion feature on Series A preferred stock
          16                   (16 )                       (16 )
Repurchase of restricted stock
                (82,894 )                                    
Issuance of Series D convertible preferred stock
    1,666,667       10,000                                            
Beneficial conversion feature recorded upon issuance of Series D convertible preferred stock
                            833                   (833 )      
Accretion of Series A and Series B preferred stock to redemption
          1,113                   (1,113 )                       (1,113 )
Issuance of Series C convertible preferred stock warrants
          557                                            
Deferred compensation related to issuance of options granted to employees
                            3,094       (3,094 )                  
Amortization of deferred compensation expense related to options issued to employees
                                  753                   753  
Deferred compensation related to restricted stock issued to nonemployees
                            882       (882 )                  
Amortization of deferred compensation expense related to restricted stock issued to nonemployees
                                  957                   957  
Deferred compensation related to stock options issued to nonemployees
                            1,315       (1,315 )                  
Amortization of deferred compensation expense related to stock options issued to nonemployees
                                  521                   521  
Foreign currency translation
                                        (7 )           (7 )
Net loss
                                              (13,582 )     (13,582 )
     
     
     
     
     
     
     
     
     
 
Balance at March 31, 2004
    22,733,347       66,875       2,318,420             12,525       (7,741 )     69       (43,933 )     (39,080 )
Conversion of redeemable convertible preferred stock into common stock
    (22,733,347 )     (66,875 )     11,964,889       143       66,732                         66,875  
     
     
     
     
     
     
     
     
     
 
Pro forma balance, March 31, 2004
        $       14,283,309     $ 143     $ 79,257     $ (7,741 )   $ 69     $ (43,933 )   $ 27,795  
     
     
     
     
     
     
     
     
     
 

      The accompanying notes are an integral part of these unaudited consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Statements of Cash Flows

(Unaudited)
($ in thousands, except per share amounts)
                               
Cumulative
from Inception
Three Months Ended, (June 14,

2002) through
March 31, March 31, March 31,
2003 2004 2004



Cash flows from operating activities
                       
Net loss
  $ (2,151 )   $ (13,582 )   $ (42,751 )
Adjustments to reconcile net loss to net cash flows used in operating activities
                       
 
Depreciation and amortization
    43       511       1,385  
 
Gain on disposal of property and equipment
          (19 )     (19 )
 
Stock-based compensation
    519       2,231       5,858  
 
Series B preferred stock issued for Garching license
                397  
 
Charge for purchase of in-process research and development
                4,609  
 
Changes in operating assets and liabilities; net of acquisition
                       
   
Prepaid expenses and other current assets
    (146 )     3       (578 )
   
Accounts payable
    (324 )     2,126       3,594  
   
Accrued expenses
    165       237       3,017  
   
Deferred revenue
          (1 )     1,888  
     
     
     
 
     
Net cash used in operating activities
    (1,894 )     (8,494 )     (22,600 )
     
     
     
 
Cash flows from investing activities
                       
Purchases of property and equipment
    (71 )     (2,139 )     (5,820 )
Proceeds from the sale of equipment
          67       67  
Acquisition of Ribopharma AG, net of acquired cash
                (121 )
     
     
     
 
     
Net cash used in investing activities
    (71 )     (2,072 )     (5,874 )
     
     
     
 
Cash flows from financing activities
                       
Proceeds from the issuance of common stock
          114       144  
Proceeds from issuance of Series A redeemable convertible preferred stock, net of issuance costs
                2,979  
Proceeds from issuance of Series B redeemable convertible preferred stock, net of issuance costs
                34,362  
Proceeds from issuance of Series C convertible preferred stock, net of issuance costs
                7,454  
Proceeds from issuance of Series D convertible preferred stock
          10,000       10,000  
Proceeds of bank debt
    589       1,879       3,977  
Repayment of bank debt
    (40 )     (1,859 )     (2,098 )
Repayment of debt assumed in acquisition
                (2,964 )
Decrease (increase) in restricted cash
          19       (2,667 )
Deferred financing costs incurred in connection with the IPO
          (1,115 )     (1,115 )
Deferred financing costs incurred in connection with the equipment line of credit
          (46 )     (55 )
     
     
     
 
     
Net cash provided by financing activities
    549       8,992       50,017  
     
     
     
 
Effect of exchange rate changes on cash
          (7 )     69  
     
     
     
 
Net increase in cash and cash equivalents
    (1,416 )     (1,581 )     21,612  
Cash and cash equivalents, beginning of period
    15,477       23,193        
     
     
     
 
Cash and cash equivalents, end of period
  $ 14,061     $ 21,612     $ 21,612  
     
     
     
 
Supplemental disclosure of cash flows
                       
Cash paid for interest
  $ 4     $ 140     $ 643  
Supplemental disclosure of noncash financing activities
                       
Fair value of warrants issued in connection with equipment line of credit included as deferred financing costs
  $     $ 557     $ 614  
Accretion of redeemable convertible preferred stock
    435       2,012       5,639  
Series B preferred stock issued to Garching in 2003 for a license in 2002 included in accrued expenses
                2,205  
Conversion of note payable and accrued interest into Series B preferred stock
                4,795  
Beneficial conversion feature on issuance of Series A and Series D preferred stock
          833       1,093  
Acquisition of Ribopharma AG
                       
Fair valued of assets acquired
  $     $     $ 12,256  
Assumed liabilities
                (8,390 )
Cash paid
                (1,500 )
Acquisition costs incurred
                (419 )
     
     
     
 
Fair value of common stock issued
  $     $     $ 1,947  
     
     
     
 

The accompanying notes are an integral part of these unaudited consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements

($ in thousands, except per share amounts)
 
1. Nature of the Business

      Alnylam (the “Company” or “Alnylam”) commenced operations on June 14, 2002 as a biopharmaceutical company seeking to develop and commercialize new drugs that work through a recently discovered system in cells known as RNA interference, or RNAi. Alnylam is focused on discovering, developing and commercializing RNAi therapeutics by establishing strategic alliances with leading pharmaceutical companies, establishing and maintaining a strong intellectual property position in the RNAi field and generating revenues through licensing agreements. Since its inception, the Company has devoted substantially all of its efforts to business planning, research and development, acquiring intellectual property rights, recruiting management and technical staff, and raising capital. Accordingly, the Company is considered a development stage enterprise as defined in the Statement of Financial Accounting Standards ( SFAS ) No. 7 and the accompanying interim financial statements represent those of a development stage enterprise.

 
2. Basis of Presentation

      The accompanying consolidated financial statements of the Company have been prepared in accordance with accounting principles generally accepted in the United States applicable to interim periods. These statements, however, are condensed and do not include all disclosures required by accounting principles generally accepted in the United States for complete financial statements and should be read in conjunction with the Company’s consolidated financial statements for the year ended December 31, 2003.

      In the opinion of the Company, the unaudited financial statements contain all adjustments (all of which were considered normal and recurring) necessary to present fairly the Company’s financial position at March 31, 2004 and the results of operations for the three-month periods ended March 31, 2003 and 2004 and the period from inception (June 14, 2002) through March 31, 2004 and cash flows for the three-month periods ended March 31, 2003 and 2004 and the period from inception (June 14, 2002) through March 31, 2004. The preparation of the Company’s consolidated financial statements in conformity with accounting principles generally accepted in the United States requires management to make estimates and assumptions that affect the reported amounts and disclosure of certain assets and liabilities at the balance sheet date. Such estimates include the carrying value of property and equipment and intangible assets and the value of certain liabilities. Actual results may differ from such estimates.

      These interim results are not necessarily indicative of results to be expected for a full year or subsequent interim periods.

 
3. Unaudited pro forma presentation

      The unaudited pro forma balance sheet and the unaudited pro forma statement of redeemable convertible preferred stock and stockholders equity (deficit) as of March 31, 2004, reflect the automatic conversion of all outstanding shares of Series A, Series B, Series C, and Series D convertible preferred stock into 11,964,889 shares of common stock upon the closing of the Company’s proposed initial public offering (IPO).

 
4. Accounting Policies

      Except as otherwise disclosed in the financial statements, the accounting policies underlying these quarterly financial statements are those set forth in the consolidated financial statements for the year ended December 31, 2003.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Accounting for Stock-Based Compensation

      Employee stock awards granted under the Company’s compensation plans are accounted for in accordance with Accounting Principles Board Opinion No. 25, Accounting for Stock Issued to Employees (“APB 25”), and related interpretations. The Company has not adopted the fair value method of accounting for stock-based compensation. All stock-based awards granted to nonemployees are accounted for at their fair value in accordance with SFAS No. 123, as amended, and Emerging Issues Task Force (“EITF”) Issue No. 96-18, Accounting for Equity Instruments that are Issued to Other Than Employees for Acquiring, or in Conjunction with Selling, Goods or Services , under which compensation expense is generally recognized over the vesting period of the award.

      If compensation expense for the Company’s stock-based compensation plan had been determined based on the fair value at the grant dates as calculated in accordance with SFAS No. 123, the Company’s net loss attributable to common stockholders and net loss per common share would approximate the pro forma amounts below:

                           
Cumulative from
Inception
(June 14,
Three Months Ended, 2002)

through
March 31, March 31, March 31,
2003 2004 2004



Net loss attributable to common stockholders
                       
 
As reported
  $ (2,586 )   $ (15,544 )   $ (48,367 )
 
Add employee stock-based compensation expense included in reported net loss
    20       753       1,420  
 
Deduct stock-based compensation expense determined under fair value method
    (22 )     (838 )     (1,535 )
     
     
     
 
Net loss — pro forma
  $ (2,588 )   $ (15,629 )   $ (48,482 )
     
     
     
 
Net loss per common share (basic and diluted)
As reported
  $ (5.56 )   $ (9.39 )   $ (56.57 )
 
Pro forma
  $ (5.56 )   $ (9.44 )   $ (56.70 )

      Since options vest over several years and additional option grants are expected to be made in future years, the pro forma effects of applying the fair value method may be material to reported net income or loss in future years.

Segment Information

      Management uses consolidated financial information in determining how to allocate resources and assess financial performance. For this reason, the Company has determined that they are principally engaged in one industry segment.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

      The following table presents total long-lived tangible assets by geographic area as of December 31, 2003 and March 31, 2004:

                   
December 31, March 31,
2003 2004


Long-lived tangible assets
               
 
United States
  $ 2,342     $ 6,648  
 
Germany
    2,414       2,313  
     
     
 
Total long-lived tangible assets
  $ 4,756     $ 8,961  
     
     
 

Recent Accounting Pronouncements

      In January 2003, the FASB issued FIN No. 46, Consolidation of Variable Interest Entities, an Interpretation of ARB No. 51 (“FIN No. 46”). The primary objectives of FIN No. 46 are to provide guidance on the identification of entities for which control is achieved through means other than through voting rights (variable interest entities) and to determine when and which business enterprise should consolidate the variable interest entities. The new model for consolidation applies to an entity which either (1) the equity investors (if any) do not have a controlling financial interest or (2) the equity investment at risk is insufficient to finance the entity’s activities without receiving additional subordinated financial support from the other parties. FIN No. 46 also requires enhanced disclosures for variable interest entities. FIN No. 46 applies immediately to variable interest entities created after January 31, 2003, and to variable interest entities in which an enterprise obtains an interest after that date. The standard as amended by FIN 46R, applies to the first fiscal year or interim period beginning after March 15, 2004 to variable interest entities in which an enterprise holds a variable interest that it acquired before February 1, 2003. There was no impact from the adoption of FIN No. 46 or FIN 46R on the Company’s consolidated financial statements.

 
5. Net Loss Per Common Share

      The Company accounts for and discloses net income (loss) per common share in accordance with SFAS No. 128, Earnings Per Share (“SFAS No. 128”). Basic net income (loss) per common share is computed by dividing net income (loss) available to common stockholders by the weighted average number of common shares outstanding. Diluted net income (loss) per common share is computed by dividing net income (loss) available to common stockholders by the weighted average number of common shares and dilutive potential common share equivalents then outstanding. Potential common shares consist of shares issuable upon the exercise of stock options and warrants (using the treasury stock method), options that were exercised prior to vesting, unvested restricted stock awards and the weighted average conversion of the preferred stock

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

into shares of common stock (using the if-converted method). The following sets forth the computation of basic and diluted net loss per common share:

                           
Cumulative from
Three Months Ended, Inception

(June 14, 2002)
March 31, March 31, through
2003 2004 March 31, 2004



Basic and diluted net loss per common share
                       
 
Net loss attributable to common stockholders
  $ (2,586 )   $ (15,544 )   $ (48,367 )
 
Basic and diluted net loss per common share
  $ (5.56 )   $ (9.39 )   $ (56.57 )
 
Basic and diluted weighted average number of common shares outstanding
    465,349       1,655,168       855,049  
 
Pro forma basic and diluted net loss per common share (unaudited)
          $ (1.11 )        
 
Basic and diluted pro forma number of common shares outstanding (unaudited)
            12,935,145          

      The following potentially dilutive, common share equivalents were excluded from the calculation of diluted net loss per common share because their effect was antidilutive for each of the periods presented:

                         
Cumulative from
Three Months Ended, Inception

(June 14, 2002)
March 31, March 31, through
2003 2004 March 31, 2004



Options
    623,991       1,942,908       1,942,908  
Warrants
    13,157       65,787       65,787  
Convertible preferred stock
    4,294,736       11,964,889       11,964,889  
Unvested restricted stock
    851,151       578,773       578,773  
Options that were exercised prior to vesting
          126,578       126,578  
 
6. Intangibles

      Intangible assets consist of the following:

                 
December 31, March 31,
2003 2004


Core Technology
  $ 3,638     $ 3,638  
Workforce
    437       437  
     
     
 
    $ 4,075     $ 4,075  
Less — accumulated amortization
    (197 )     (315 )
     
     
 
      3,878       3,760  
     
     
 

      Amortization expense was none, $118 and $315 in the three months ended March 31, 2003 and 2004 and the period cumulative from inception (June 14, 2002) through March 31, 2004, respectively.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)
 
7. Property and Equipment
                         
Estimated
Useful Life December 31, March 31,
(Years) 2003 2004



Laboratory equipment and software
    5     $ 4,300     $ 4,686  
Computer equipment
    3       270       455  
Furniture and fixtures
    5       431       440  
Leasehold improvements
    *       50       50  
Construction in process
            363       4,317  
             
     
 
              5,414       9,948  
Less — accumulated depreciation
            (658 )     (987 )
             
     
 
            $ 4,756     $ 8,961  
             
     
 


shorter of asset life or lease term

      Depreciation expense was $43, $349, and $1,006 for the three months ended March 31, 2003 and 2004 and the period cumulative from inception (June 14, 2002) through March 31, 2004, respectively.

 
8. Accrued Liabilities

      Accrued expenses consist of the following at December 31, 2003 and March 31, 2004:

                 
December 31, March 31,
2003 2004


License fees
  $     $ 2,000  
Payroll and benefits
    823       630  
Professional fees
    344       1,259  
Other
    276       252  
     
     
 
    $ 1,443     $ 4,141  
     
     
 

      Accrued license fees represents the remaining license fee payment owed to Isis Pharmaceuticals, Inc. as of March 31, 2004 for the rights to use certain patented technology.

 
9. Notes Payable
 
Equipment Line of Credit

      On March 30, 2004, the Company entered into an agreement with Lighthouse Capital Partners V, L.P. (“Lighthouse”) to establish an equipment line of credit for $10,000. The Company has the ability to draw down amounts under the line of credit through June 30, 2005 upon adherence to certain conditions. All borrowings under the line of credit are collateralized by the assets financed. Borrowings bear interest at prime rate plus 3 percent (7.0% at March 31, 2004). The Company will make interest only payments on all draw-downs made during the period from March 30, 2004 through June 30, 2005 at which point all draw-downs under the line of credit will be repaid over 48 months. On the maturity of each equipment advance under the line of credit, the Company is required to pay, in addition to the paid principal and interest, an additional amount of 11.5 percent of the original principal. This amount is being accrued over the applicable borrowing period as additional interest expense. In connection with the agreement, Alnylam issued Lighthouse warrants to purchase 100,000 shares of Series C redeemable convertible preferred stock at an exercise price of $5.00 per share and a term of seven years, which are convertible into 52,630 shares of common stock. Alnylam recorded the fair value of these warrants of $557 as a deferred financing cost which is being amortized to interest expense over the repayment term of the first advance of 63 months. The fair value of the warrants

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ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

was calculated using the Black-Scholes option pricing model with the following assumptions: 100% volatility, risk-free interest rate of 3.49%, no dividend yield, and a seven-year term.

      In conjunction with entering into the agreement, Alnylam paid off the remaining balance of the loan with Silicon Valley Bank, of $1,859, via an initial draw in the amount of the payoff balance. As a result of the early termination of the Silicon Valley Bank loan, Alnylam paid additional interest of $168.

      As of March 31, 2004, future cash payments under the note payable to Lighthouse are as follows:

         
Year Ended December 31,
       
Remaining 9 months in 2004
  $ 99  
2005
    336  
2006
    540  
2007
    540  
2008
    540  
2009
    486  
     
 
      2,541  
Less: portion representing interest
    662  
     
 
      1,879  
Less: current portion
     
     
 
Long-term equipment loan
  $ 1,879  
     
 

      The terms of the agreement include certain covenants which limit the Company’s ability to sell or transfer certain assets or businesses or to pay dividends or other distributions above specified limits. As of March 31, 2004, $8,121 is available on the line of credit to finance additional equipment.

10.     Redeemable Convertible Preferred Stock

      In March 2004, in conjunction with a collaboration agreement with Isis Pharmaceuticals, Inc. (Note 14), Isis purchased 1,666,667 shares of Series D convertible preferred stock (“Series D Stock”) of the Company for $10,000. Each share of Series D Stock is convertible into 0.526 of a share of common stock at the option of the holder, has 0.526 of a vote per share, is entitled to no mandatory dividends, and has a liquidation preference of $6.00 per share that would be paid only after holders of Series A Stock and Series B Stock have received their full preference amount. In connection with the issuance of the Series D convertible preferred stock, the issuance was deemed to have contained a beneficial conversion feature amounting to $833 which was recognized as a deemed dividend to the Series D preferred shareholder. The Company’s Series A

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

and B redeemable convertible preferred stock and Series C and D convertible preferred stock, $0.0001 par value, consists of the following as of December 31, 2003 and March 31, 2004:

                 
December 31, March 31,
2003 2004


Series A redeemable convertible preferred stock; 3,000,010 shares authorized, issued and outstanding at December 31, 2003 and March 31, 2004, respectively (liquidation preference of $3,242)
  $ 3,094     $ 3,187  
Series B redeemable convertible preferred stock; 16,672,078 shares authorized, 16,561,845 issued and outstanding at December 31, 2003 and March 31, 2004, respectively (liquidation preference of $41,405)
    44,641       45,677  
Series C convertible preferred stock; 2,600,000 and 1,604,825 shares authorized at December 31, 2003, and March 31, 2004, and 1,504,825 shares issued and outstanding at December 31, 2003 and March 31, 2004 (liquidation preference of $13,000)
    7,454       7,454  
Warrants to purchase Series C convertible preferred stock
          557  
Series D convertible preferred stock; 1,666,667 shares authorized; no shares and 1,666,667 shares issued and outstanding at December 31, 2003 and March 31, 2004, respectively (liquidation preference of $10,000)
          10,000  
     
     
 
    $ 55,189     $ 66,875  
     
     
 

11.     Common Stock

Common Stock

      As of March 31, 2004, the Company had 32,000,000 shares of common stock authorized, 2,401,314 shares issued and 2,318,420 shares outstanding. As of March 31, 2004, the Company has reserved 12,030,676 shares for issuance to preferred stockholders in the event that the redeemable convertible preferred stock and warrants to purchase 125,000 shares of preferred stock are converted into common stock. In addition, the Company has reserved 2,125,329 shares of common stock for future issuance upon the exercise of common stock options. During the three months ended March 31, 2004, the Company repurchased 82,894 shares of unvested common stock from a terminated employee for $0.0001 per share. The Company has recorded this as treasury stock.

Restricted Stock to NonEmployees

      In connection with restricted stock issued to nonemployees, the Company has recorded cumulative deferred compensation of $4,673, which represents the cumulative fair value of the awards at March 31, 2004. Shares remaining unvested or subject to forfeiture for nonemployees still providing services are subject to a mark-to-market adjustment during each reporting period prior to vesting in full. The Company recorded $479, $957 and $3,370 of compensation expense during the three months ended March 31, 2003 and 2004 and the period cumulative from inception (June 14, 2002) through March 31, 2004, respectively, related to the amortization of the deferred compensation.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

12.     Stock Option Plan

      The following table summarizes the activity of the Company’s stock option plan:

                         
Number of Weighted
Options Average
Available for Number of Exercise
Future Grant Options Price



Outstanding at December 31, 2003
    498,761       1,693,555     $ 0.54  
Granted
            417,098       0.95  
Exercised
            (149,832 )     0.76  
Canceled
            (17,913 )     0.53  
             
     
 
Outstanding at March 31, 2004
    182,421       1,942,908     $ 0.61  
             
     
 

      At March 31, 2004, 182,421 shares of the Company’s common stock were available for future grants under the 2003 Plan. On April 26, 2004, the Board of Directors authorized, subject to stockholder approval, an additional 131,578 shares available for future grants under the 2003 Plan.

Actions of the Board of Directors

      The Company’s Board of Directors approved the following on March 30, 2004:

  •  Effective upon the closing of an initial public offering, no further stock options or other equity awards will be granted under the 2002 Plan or 2003 Plan;
 
  •  Upon the effective date of the registration statement relating to the initial public offering and subject to shareholder approval, authorization of the 2004 Stock Incentive Plan (the “2004 Plan”) with 1,578,947 shares authorized for future issuance under the plan plus an additional amount authorized based on the remaining shares available under the 2002 Plan and 2003 Plan as of the closing of the initial public offering. In addition, the 2004 Plan provides for an annual increase in the number of shares available for issuance under the plan equal to the lesser of 2,631,578 shares of common stock, 5% of the Company’s outstanding shares or an amount determined by the board of directors. The 2004 Plan includes a nonemployee director stock option program under which each eligible nonemployee director will be entitled to receive an annual grant of options to purchase 7,105 shares of common stock upon his or her initial appointment to the board of directors and a subsequent annual grant of an option to purchase 5,263 shares of common stock based on continued service; and
 
  •  Authorization of a 2004 Employee Stock Purchase Plan with 315,789 shares authorized for issuance under the plan commencing after the closing of the initial public offering and subject to shareholder approval.

      On May 7, 2004, the Company effected a reverse 1-for-1.9 split of all outstanding shares of common stock. All common share and per share data presented in the accompanying consolidated financial statements and the notes thereto have been retroactively restated to reflect this event.

Stock-based Compensation

      During the three months ended March 31, 2004 in connection with the grant of common stock options to employees, the Company recorded deferred stock compensation of approximately $3,094, representing the difference between the exercise price and the fair market value of the Company’s common stock on the date the stock options were granted. During the three months ended March 31, 2003 and 2004, and the period cumulative from inception (June 14, 2002) through March 31, 2004, the Company recorded amortization of

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

deferred stock compensation of $20, $753 and $1,420, respectively, related to all grants to employees previously made below fair value at the time of grant since inception.

      In connection with stock options granted to nonemployees for services during the year ended December 31, 2003 and the three months ended March 31, 2004, the Company has recorded aggregate deferred compensation of approximately $2,494, which represents the fair value of nonemployee grants. Stock-based compensation expense related to these nonemployee options for the three months ended March 31, 2003 and 2004 and the period cumulative from inception (June 14, 2002) through March 31, 2004, was $20, $521 and $1,068, respectively.

 
13. Commitments and Contingencies
 
Contractor Commitment

      On March 26, 2004, the Company entered into an agreement with a contractor for the build out of the Company’s new facility in Cambridge, Massachusetts. The contract contains a guaranteed maximum price of $5,401. As a part of the lease agreement signed with the landlord, the landlord will reimburse the Company for certain of the costs of the tenant improvements, up to a maximum of $2,978.

 
Indemnification

      In connection with a certain license agreement, the Company is required to indemnify the licensor for certain damages arising in connection with the intellectual property rights licensed under the agreement.

 
14. Significant Agreements
 
Isis Pharmaceuticals, Inc. Collaboration and License Agreement

      In March 2004, Alnylam entered into a collaboration and license agreement with Isis Pharmaceuticals, Inc. Isis granted Alnylam licenses to its current and future patents and patent applications relating to chemistry and to RNA-targeting mechanisms for the research, development and commercialization of double-stranded RNA products. Alnylam has the right to use Isis technologies in its development programs or in collaborations and Isis has agreed not to grant licenses under these patents to any other organization for the discovery, development and commercialization of double-stranded RNA products designed to work through a RNAi mechanism, except in the context of a collaboration in which Isis plays an active role. Alnylam granted Isis non-exclusive licenses to its current and future patents and patent applications relating to RNA-targeting mechanisms and to chemistry for research use. Alnylam also granted Isis the exclusive or co-exclusive right to develop and commercialize double-stranded RNA products developed using RNAi technology against a limited number of targets. In addition, Alnylam granted Isis non-exclusive rights to research, develop and commercialize single-stranded RNA products.

      Under the terms of the agreement, Alnylam agreed to pay Isis an upfront license fee of $5,000, $3,000 of which was paid upon signing of the agreement and the remaining $2,000 of which is due on January 3, 2005. Alnylam has recorded this $5,000 of consideration as license fee expense within research and development costs as the technology has not reached technological feasibility and does not have any alternative future use. Alnylam also agreed to make milestone payments (totalling $3.4 million payable upon the occurrence of specified development and regulatory events) and royalties to Isis for each product that Alnylam or a collaborator develop utilizing Isis intellectual property. In addition, Alnylam agreed to pay to Isis a percentage of some fees from strategic collaborations it may enter into that include access to the Isis intellectual property. In conjunction with the agreement, Isis purchased 1,666,667 shares of series D preferred stock of Alnylam for $10,000. Isis also agreed to pay Alnylam a license fee, milestone payments (totalling

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Unaudited Interim Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

$3.4 million payable upon the occurrence of specified development and regulatory events) and royalties for each product developed by Isis or a collaborator that utilizes its intellectual property. The agreement also gives Alnylam an option to use Isis manufacturing services for RNA-based therapeutics.

      In addition, the agreement with Isis gives Alnylam the exclusive right to grant sub-licenses for Isis technology to third parties with whom Alnylam is not collaborating. Alnylam may include these sub-licenses in its InterfeRx licenses and research reagent and services licenses. If a license includes rights to Isis intellectual property, Alnylam will share revenues from that license equally with Isis.

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Table of Contents

Report of Independent Auditors

To the Board of Directors and Stockholders of

Alnylam Pharmaceuticals, Inc.

      In our opinion, the accompanying consolidated balance sheets and the related consolidated statements of operations, of changes in redeemable convertible preferred stock and stockholders’ deficit and of cash flows present fairly, in all material respects, the financial position of Alnylam Pharmaceuticals, Inc. (a development stage enterprise) at December 31, 2003 and 2002, and the results of its operations and its cash flows for the year ended December 31, 2003 and for the period from inception (June 14, 2002) through December 31, 2002, and cumulatively, for the period from inception (June 14, 2002) through December 31, 2003, in conformity with accounting principles generally accepted in the United States of America. These financial statements are the responsibility of the Company’s management; our responsibility is to express an opinion on these financial statements based on our audits. We conducted our audits of these statements in accordance with auditing standards generally accepted in the United States of America, which require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. An audit includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements, assessing the accounting principles used and significant estimates made by management, and evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion.

/s/ PricewaterhouseCoopers LLP

Boston, Massachusetts
Feb ruary 27, 2004, except as to Note 15,

as to which the date is May 7, 2004

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Balance Sheets

($ in thousands, except per share amounts)
                     
December 31,

2002 2003


Assets
Current assets
               
 
Cash and cash equivalents
  $ 15,477     $ 23,193  
 
Restricted cash
    19       373  
 
Prepaid expenses and other current assets
    23       623  
     
     
 
   
Total current assets
    15,519       24,189  
Property and equipment, net
    526       4,756  
Intangible assets, net
          3,878  
Restricted cash
          2,313  
Deferred financing costs
    66       47  
     
     
 
   
Total assets
  $ 16,111     $ 35,183  
     
     
 
Liabilities, Redeemable Convertible Preferred Stock and Stockholders’ Equity (Deficit)
Current liabilities
               
 
Accounts payable
  $ 674     $ 1,510  
 
Accrued liabilities
    1,999       1,443  
 
Current portion of note payable
          558  
 
Deferred revenue
          333  
     
     
 
   
Total current liabilities
    2,673       3,844  
Deferred revenue
          1,556  
Note payable, net of current portion
          1,301  
     
     
 
   
Total liabilities
    2,673       6,701  
     
     
 
Commitments and contingencies (Note 12)
               
Redeemable convertible preferred stock (Note 8)
    18,084       55,189  
Stockholders’ equity (deficit)
               
 
Common stock, $0.0001 par value, 34,739,392 shares authorized; 1,342,084 and 2,251,482 shares issued and outstanding as of December 31, 2002 and 2003
           
  Additional paid-in capital           7,416  
  Deferred compensation     (161 )     (4,681 )
  Accumulated other comprehensive income (loss)           76  
  Deficit accumulated in the development stage     (4,485 )     (29,518 )
     
     
 
   
Total stockholders’ equity (deficit)
    (4,646 )     (26,707 )
     
     
 
   
Total liabilities, redeemable convertible preferred stock and stockholders’ equity (deficit)
  $ 16,111     $ 35,183  
     
     
 

The accompanying notes are an integral part of these consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Statements of Operations

($ in thousands, except per share amounts)
                               
Period from Cumulative
Inception from Inception
(June 14, (June 14,
2002) 2002)
through Year Ended through
December 31, December 31, December 31,
2002 2003 2003



Revenue from research collaborators
  $     $ 176     $ 176  
     
     
     
 
Costs and expenses
                       
Research and development(1)
    3,342       13,097       16,439  
General and administrative(1)
    880       7,527       8,407  
Purchased in-process research and development
          4,609       4,609  
     
     
     
 
     
Total operating costs and expenses
    4,222       25,233       29,455  
     
     
     
 
     
Loss from operations
    (4,222 )     (25,057 )     (29,279 )
Interest income
    86       179       265  
Interest expense
          (127 )     (127 )
Other expense
          (28 )     (28 )
     
     
     
 
Net loss
    (4,136 )     (25,033 )     (29,169 )
Accretion of redeemable convertible preferred stock
    (748 )     (2,906 )     (3,654 )
     
     
     
 
     
Net loss attributable to common stockholders
  $ (4,884 )   $ (27,939 )   $ (32,823 )
     
     
     
 
Comprehensive income
                       
Net loss
  $ (4,136 )   $ (25,033 )   $ (29,169 )
 
Foreign currency translation adjustments
          76       76  
     
     
     
 
Comprehensive loss
  $ (4,136 )   $ (24,957 )   $ (29,093 )
     
     
     
 
Net loss per share
                       
Net loss per common share (basic and diluted)
  $ (14.74 )   $ (29.64 )   $ (36.12 )
     
     
     
 
Weighted average shares used to compute basic and diluted net loss per common share
    331,341       942,665       908,695  
Pro forma net loss per common share (basic and diluted) (unaudited)
          $ (3.17 )        
             
         
Shares used to compute pro forma basic and diluted net loss per common share (unaudited)
            7,977,685          

(1)  Noncash stock-based compensation expense included in these amounts are as follows:
                       
   
Research and development
  $ 172     $ 2,832     $ 3,004  
   
General and administrative
          623       623  
     
     
     
 
     
Total non-cash stock-based compensation
  $ 172     $ 3,455     $ 3,627  
     
     
     
 

The accompanying notes are an integral part of these consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Statements of Changes In Redeemable Convertible Preferred Stock and Stockholders’ Deficit

Period from Inception (June 14, 2002) through December 31, 2003
($ in thousands, except per share amounts)
                                                                         
Redeemable Convertible
Preferred Stock Common Stock Accumulated Deficit


Additional Other Accumulated in
Number of Number of Par Value Paid-in Deferred Comprehensive the Development
Shares Amount Shares $0.0001 Capital Compensation Income Stage Total









Balance at inception (June 14, 2002)
        $           $     $     $     $     $     $  
Issuance of common stock to founders
                1,294,716                                      
Issuance of common stock to nonemployee
                47,368             9                         9  
Issuance of Series A redeemable convertible preferred stock, net of issuance costs of $21
    2,000,010       1,979                                            
Issuance of Series B redeemable convertible preferred stock, net of issuance costs of $43
    6,160,000       15,357                                            
Issuance of warrant to purchase Series B preferred stock in connection with equipment line of credit
                            57                         57  
Deferred compensation related to restricted common stock issued to nonemployees
                            333       (333 )                  
Amortization of deferred compensation expense related to restricted stock issued to nonemployees
                                  172                   172  
Accretion of Series A and Series B preferred stock to redemption
          748                   (399 )                 (349 )     (748 )
Net loss
                                              (4,136 )     (4,136 )
     
     
     
     
     
     
     
     
     
 
Balance at December 31, 2002
    8,160,010       18,084       1,342,084                   (161 )           (4,485 )     (4,646 )
Exercise of common stock options
                44,526             21                         21  
Issuance of common stock in connection with acquisition of Ribopharma
                815,376             1,947                         1,947  
Settlement of Ribopharma AG accrued interest for common stock
                49,496             119                         119  
Issuance of Series A redeemable convertible preferred stock
    1,000,000       1,000                                            
Beneficial conversion feature from the issuance of Series A preferred stock
          (260 )                 260                         260  
Accretion of beneficial conversion feature on Series A preferred stock
          27                   (27 )                       (27 )
Issuance of Series B redeemable convertible preferred stock
    10,401,845       26,005                                            
Issuance of Series C convertible preferred stock, net of issuance costs of $70
    1,504,825       7,454                                            
Accretion of Series A and Series B preferred stock to redemption
          2,879                   (2,879 )                       (2,879 )
Deferred compensation related to issuance of options granted to employees
                            3,338       (3,338 )                  
Amortization of deferred compensation expense related to options issued to employees
                                  667                   667  
Deferred compensation related to restricted stock issued to nonemployees
                            3,458       (3,458 )                  
Amortization of deferred compensation expense related to restricted stock issued to nonemployees
                                  2,241                   2,241  
Deferred compensation related to stock options issued to nonemployees
                            1,178       (1,178 )                  
Amortization of deferred compensation expense related to stock options issued to nonemployees
                                  547                   547  
Foreign currency translation
                                        76             76  
Net loss
                                              (25,033 )     (25,033 )
     
     
     
     
     
     
     
     
     
 
Balance at December 31, 2003
    21,066,680     $ 55,189       2,251,482     $     $ 7,416     $ (4,681 )   $ 76     $ (29,518 )   $ (26,707 )
     
     
     
     
     
     
     
     
     
 

The accompanying notes are an integral part of these consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Consolidated Statements of Cash Flows

($ in thousands, except per share amounts)
                               
Period from Cumulative
Inception from Inception
(June 14, (June 14,
2002) 2002)
through Year Ended through
December 31, December 31, December 31,
2002 2003 2003



Cash flows from operating activities
                       
Net loss
  $ (4,136 )   $ (25,033 )   $ (29,169 )
Adjustments to reconcile net loss to net cash flows used in operating activities:
                       
 
Depreciation and amortization
    36       838       874  
 
Noncash stock-based compensation
    172       3,455       3,627  
 
Series B preferred stock issued for Garching license
          397       397  
 
Charge for purchased in-process research and development
          4,609       4,609  
 
Changes in operating assets and liabilities; net of acquisition
                       
   
Prepaid expenses and other current assets
    (23 )     (558 )     (581 )
   
Accounts payable
    674       794       1,468  
   
Accrued expenses
    1,999       781       2,780  
   
Deferred revenue
          1,889       1,889  
     
     
     
 
     
Net cash used in operating activities
    (1,278 )     (12,828 )     (14,106 )
     
     
     
 
Cash flows from investing activities
                       
Purchases of property and equipment
    (562 )     (3,119 )     (3,681 )
Acquisition of Ribopharma AG, net of acquired cash
          (121 )     (121 )
     
     
     
 
     
Net cash used in investing activities
    (562 )     (3,240 )     (3,802 )
     
     
     
 
Cash flows from financing activities
                       
Proceeds from the issuance of common stock
    9       21       30  
Proceeds from issuance of Series A redeemable convertible preferred stock, net of issuance costs
    1,979       1,000       2,979  
Proceeds from issuance of Series B redeemable convertible preferred stock, net of issuance costs
    15,357       19,005       34,362  
Proceeds from issuance of Series C convertible preferred stock, net of issuance costs
          7,454       7,454  
Proceeds of bank debt
          2,098       2,098  
Repayment of bank debt
          (239 )     (239 )
Repayment of debt assumed in acquisition
          (2,964 )     (2,964 )
Increase in restricted cash
    (19 )     (2,667 )     (2,686 )
Deferred financing costs incurred in connection with the equipment line of credit
    (9 )           (9 )
     
     
     
 
     
Net cash provided by financing activities
    17,317       23,708       41,025  
     
     
     
 
Effect of exchange rate changes on cash
          76       76  
     
     
     
 
Net increase in cash and cash equivalents
    15,477       7,716       23,193  
Cash and cash equivalents, beginning of period
          15,477        
     
     
     
 
Cash and cash equivalents, end of period
  $ 15,477     $ 23,193     $ 23,193  
     
     
     
 

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Consolidated Statements of Cash Flows — (Continued)

($ in thousands, except per share amounts)
                         
Period from Cumulative
Inception from Inception
(June 14, (June 14,
2002) 2002)
through Year Ended through
December 31, December 31, December 31,
2002 2003 2003



Supplemental disclosure of cash flows
                       
Cash paid for interest
  $     $ 503     $ 503  
Supplemental disclosure of noncash financing activities
                       
Fair value of warrant issued in connection with equipment line of credit included as deferred financing costs
  $ 57     $     $ 57  
Accretion of redeemable convertible preferred stock
    748       2,879       3,627  
Series B preferred stock issued to Garching in 2003 for a license in 2002 included in accrued expenses
          2,205       2,205  
Conversion of note payable and accrued interest into Series B preferred stock
          4,795       4,795  
Beneficial conversion feature on issuance of Series A preferred stock
          260       260  
Acquisition of Ribopharma AG
                       
Fair valued of assets acquired
  $     $ 12,256     $ 12,256  
Assumed liabilities
          (8,390 )     (8,390 )
Cash paid
          (1,500 )     (1,500 )
Acquisition costs incurred
          (419 )     (419 )
     
     
     
 
Fair value of common stock issued
  $     $ 1,947     $ 1,947  
     
     
     
 

The accompanying notes are an integral part of these consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.

(A Development Stage Enterprise)

Notes to Consolidated Financial Statements

December 31, 2002 and 2003
($ in thousands, except per share amounts)

1.     Nature of the Business

      Alnylam (the “Company”) commenced operations on June 14, 2002 as a biopharmaceutical company seeking to develop and commercialize new drugs that work through a recently discovered system in cells known as RNA interference, or RNAi. Alnylam is focused on discovering, developing and commercializing RNAi therapeutics by establishing strategic alliances with leading pharmaceutical companies, establishing and maintaining a strong intellectual property position in the RNAi field and generating revenues through licensing agreements. Since its inception, the Company has devoted substantially all of its efforts to business planning, research and development, acquiring intellectual property rights, recruiting management and technical staff, and raising capital. Accordingly, the Company is considered a development stage enterprise as defined in the Statement of Financial Accounting Standards (“SFAS”) No. 7 and the accompanying financial statements represent those of a development stage enterprise.

      On July 31, 2003, Alnylam acquired the outstanding shares of Ribopharma AG (a development stage enterprise) and accounted for the acquisition as an asset purchase. Under the terms of the agreement, shareholders of Ribopharma AG exchanged all their outstanding shares for $1,500 in cash and 815,376 shares of Alnylam common stock (Note 4).

      The accompanying consolidated financial statements have been prepared on a basis which assumes that the Company will continue as a going concern and which contemplates the realization of assets and satisfaction of liabilities and commitments in the normal course of business. The Company has a limited operating history and has incurred losses from operations since its inception. The Company has an accumulated deficit of $29,518 at December 31, 2003, and the Company believes that its existing capital resources will enable it to maintain its current and planned operations through at least December 31, 2004. The future viability of the Company beyond 2004 is largely dependent on its ability to raise additional capital to finance its operations. Although management continues to pursue additional financing plans, there is no assurance that the Company will be successful in obtaining financing on terms acceptable to the Company, if at all.

      The Company is subject to risks common to companies in the drug development and pharmaceutical industry, including but not limited to, the successful development and commercialization of drug candidates, fluctuations in operating results and financial risks, potential need for additional financing, ability to obtain licenses to technology to be used in the Company’s research, protection of proprietary technology and patent risks, compliance with government regulations, dependence on key personnel and collaborative partners, competition, customer demand, management of growth, and the effectiveness of marketing by the Company.

2.     Summary of Significant Accounting Policies

      Significant accounting policies applied by the Company in the preparation of its consolidated financial statements are as follows:

Basis of Presentation

      The Company comprises three entities, Alnylam Pharmaceuticals, Inc. (the parent company) and two subsidiaries (Alnylam US and Ribopharma AG). Alnylam Pharmaceuticals, Inc is a Delaware corporation that was formed on May 8, 2003 and was formerly called Alnylam Holding Co. Alnylam US is also a Delaware corporation that was formed on June 14, 2002 and was previously called Alnylam Pharmaceuticals, Inc. On July 31, 2003, Alnylam Pharmaceuticals, Inc. (the parent company) and Alnylam US were reorganized and Alnylam US became a wholly owned subsidiary of Alnylam Pharmaceuticals, Inc. (the parent company).

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Since Alnylam US and Alnylam Pharmaceuticals, Inc. were under common control and Alnylam Pharmaceuticals, Inc. (the parent company) did not have independent operations prior to the reorganization, the combination of the two entities did not result in a new basis of accounting.

Principles of Consolidation

      The accompanying consolidated financial statements reflect the operations of the Company and its wholly-owned subsidiaries Alnylam US and Ribopharma AG. All significant intercompany accounts and transactions have been eliminated.

Use of Estimates

      The preparation of financial statements in conformity with accounting principles generally accepted in the United States of America requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and the disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. Actual results could differ from those estimates.

Concentration of Credit Risk

      Financial instruments which potentially expose the Company to concentration of credit risk consist primarily of cash and cash equivalents. As of December 31, 2002 and 2003, substantially all of the Company’s cash and cash equivalents was invested in money market mutual funds, primarily through a single highly rated financial institution.

Cash and Cash Equivalents

      The Company considers all highly liquid investments with an original maturity of three months or less at the date of purchase to be cash equivalents. Cash equivalents, which consist primarily of money market instruments and an overnight sweep account, amounted to $15,477 and $23,193 at December 31, 2002 and 2003, respectively. These investments are stated at cost plus accrued interest, which approximates fair market value.

Restricted Cash

      In June 2002, in conjunction with the lease for its 790 Memorial Drive, Cambridge facility, the Company arranged for the delivery to the landlord of a $19 letter of credit secured by restricted cash. At the end of the lease in April 2004, the cash will no longer be restricted. The remaining current restricted cash balance relates to a letter of credit the Company was obligated to enter into resulting from indemnity agreements that the Company entered into with the two Ribopharma shareholders for $354 (See Note 12).

      In September 2003, the Company entered into a lease for a new facility at 300 Third Street, Cambridge, Massachusetts that it anticipates occupying in 2004. In connection with this lease, the Company arranged for the delivery to the landlord of a letter of credit in an amount equal to one year’s rent at the new facility, or $2,313. This letter of credit was secured by restricted cash. Consistent with the terms of the lease, the Company has accounted for restricted cash as long-term in the accompanying consolidated balance sheets.

Fair Value of Financial Instruments

      The carrying amounts of the Company’s financial instruments, which include cash equivalents, accounts payable, accrued expenses and notes payable, approximate their fair values at December 31, 2002 and 2003.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Property and Equipment and Long-Lived Assets

      Property and equipment is recorded at cost and depreciated using the straight-line method over the estimated useful life of each asset. Expenditures for repairs and maintenance are charged to expense as incurred. On disposal, the related assets and accumulated depreciation are eliminated from the accounts and any resulting gain or loss is included in income. Leasehold improvements are amortized over the shorter of the useful life of the improvement or the remaining term of the lease.

      The Company evaluates the recoverability of its property and equipment and other long-lived assets when circumstances indicate that an event of impairment may have occurred in accordance with the provisions of SFAS No. 144, Accounting for the Impairment of Disposal of Long-Lived Assets (“SFAS No. 144”). SFAS No. 144 further refines the requirements of SFAS No. 121, Accounting for the Impairment of Long-Lived Assets and Long-Lived Assets to be Disposed of , that companies (1) recognize an impairment loss only if the carrying amount of a long-lived asset is not recoverable based on its undiscounted future cash flows and (2) measure an impairment loss as the difference between the carrying amount and fair value of the asset. In addition, SFAS No. 144 provides guidance on accounting and disclosure issues surrounding long-lived assets to be disposed of by sale. No impairment was required to be recognized for any of the periods ended December 31, 2002 and 2003.

Revenue Recognition

      The Company recognizes revenue in accordance with the Securities and Exchange Commission’s Staff Accounting Bulletin No. 104, Revenue Recognition in Financial Statements (“SAB 104”). Revenue is recognized when the following criteria have been met:

  1. Persuasive evidence of an arrangement exists;
 
  2. Delivery has occurred and risk of loss has passed;
 
  3. The seller’s price to the buyer is fixed or determinable; and
 
  4. Collectibility is reasonably assured.

      The Company has entered into a collaboration agreement with Merck. Revenue from this collaboration agreement includes nonrefundable license fees, milestones and royalties. When evaluating multiple element arrangements, the Company considers whether the components of the arrangement represent separate units of accounting as defined in Emerging Issues Task Force (EITF) Issue No. 00-21, Revenue Arrangements with Multiple Deliverables (“EITF 00-21”). EITF 00-21 requires the following criteria to be met for an element to represent a separate unit of accounting:

  1. The delivered items have value to a customer on a standalone basis;
 
  2. There is objective and reliable evidence of the fair value of the undelivered items; and
 
  3. Delivery or performance is probable and within the control of the vendor for any delivered items that have a right of return.

      Nonrefundable license fees, which are not separable from the Company’s continuing performance obligations, are recognized as revenue as the Company performs under the collaboration agreement. Where the Company’s level of effort is relatively constant over the performance period, it recognizes total fixed or determined contract revenues on a straight-line basis over the development period set forth in the contract.

      The Company recognizes milestone payments as revenue upon achievement of the milestone only if (1) it represents a separate unit of accounting as defined in EITF 00-21; (2) the milestone payments are

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

nonrefundable; (3) substantive effort is involved in achieving the milestone; and (4) the amount of the milestone is reasonable in relation to the effort expended or the risk associated with achievement of the milestone. If any of these conditions are not met, the Company defers the milestone payments and recognizes them as revenue over the term of the contract as it completes its performance obligations.

Income Taxes

      The Company uses the liability method of accounting for income taxes. Under the liability method, deferred tax assets and liabilities reflect the impact of temporary differences between amounts of assets and liabilities for financial reporting purposes and such amounts as measured under enacted tax laws. A valuation allowance is required to offset any net deferred tax assets if, based upon the available evidence, it is more likely than not that some or all of the deferred tax asset will not be realized.

Research and Development Costs

      Research and development costs are expensed as incurred. Included in research and development costs are wages, benefits and other operating costs such as legal expenses to secure and defend patents (which are expensed as incurred), facilities, supplies and overhead directly related to the Company’s research and development department as well as costs to acquire technology licenses.

      During the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, and the period cumulative from inception (June 14, 2002) through December 31, 2003, the Company included approximately $481, $1,357 and $1,838, respectively, of legal patent costs in research and development costs and expenses.

      The Company has entered into several license agreements for rights to utilize certain technologies. The terms of the licenses may provide for up-front payments, annual maintenance payments, milestone payments based upon certain specified events being achieved and royalties on product sales. Costs to acquire and maintain licensed technology that has not reached technological feasibility and does not have alternative future use are charged to research and development expense as incurred. During the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, and the period cumulative from inception (June 14, 2002) through December 31, 2003, the Company charged to research and development expense $1,918, $1,720 and $3,638, respectively, of costs associated with license fees (Note 14).

Accounting for Stock-Based Compensation

      Employee stock awards granted under the Company’s compensation plans are accounted for in accordance with Accounting Principles Board Opinion No. 25, Accounting for Stock Issued to Employees (“APB 25”), and related interpretations. The Company has not adopted the fair value method of accounting for stock-based compensation. Accordingly, compensation expense is recorded for options issued to employees to the extent that the fair market value of the Company’s common stock exceeds the exercise price of the option at the date granted and all other criteria for fixed accounting have been met. All stock-based awards granted to nonemployees are accounted for at their fair value in accordance with SFAS No. 123, as amended, and Emerging Issues Task Force (“EITF”) Issue No. 96-18, Accounting for Equity Instruments that are Issued to Other Than Employees for Acquiring, or in Conjunction with Selling, Goods or Services , under which compensation expense is generally recognized over the vesting period of the award.

      The Company provides the disclosure requirements of SFAS No. 148, Accounting for Stock Based Compensation — Transition and Disclosure, an amendment of FASB Statement No. 123 (“SFAS 148”). If compensation expense for the Company’s stock-based compensation plan had been determined based on the

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

fair value at the grant dates as calculated in accordance with SFAS No. 123, the Company’s net loss attributable to common stockholders and net loss per common share would approximate the pro forma amounts below:

                           
Period from
Inception Cumulative from
(June 14, Inception
2002) (June 14, 2002)
through Year Ended through
December 31, December 31, December 31,
2002 2003 2003



Net loss attributable to common stockholders Net loss, as reported
  $ (4,884 )   $ (27,939 )   $ (32,823 )
 
Add employee stock-based compensation expense included in reported net loss
          667       667  
 
Deduct stock-based compensation expense determined under fair value method
          (697 )     (697 )
     
     
     
 
Net loss — pro forma
  $ (4,884 )   $ (27,969 )   $ (32,853 )
     
     
     
 
Net loss per common share (basic and diluted)
                       
 
As reported
  $ (14.74 )   $ (29.64 )   $ (36.12 )
     
     
     
 
 
Pro forma
  $ (14.74 )   $ (29.67 )   $ (36.15 )
     
     
     
 

      The Company has estimated the fair value of its granted stock options by applying a present value approach which does not consider expected volatility of the underlying stock (“minimum value method”) using the following weighted average assumptions for the period from inception (June 14, 2002) through December 31, 2002 and for the year ended December 31, 2003:

                 
Period from
Inception
(June 14,
2002) through Year Ended
December 31, December 31,
2002 2003


Risk-free interest rate
    3.02 %     3.19 %
Expected dividend yield
           
Expected option term
    5 years       5 years  
Volatility
    0 %     0 %

      Since options vest over several years and additional option grants are expected to be made in future years, the pro forma effects of applying the fair value method may be material to reported net income or loss in future years.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Redeemable Convertible Preferred Stock

      Redeemable convertible preferred stock is treated as if it is mandatorily redeemable (classified in the mezzanine section of the balance sheet) if it may be redeemed by the holder based on facts and circumstances not in the Company’s control. If there is a specified redemption date, the carrying value is accreted to its redemption value over the term. These adjustments are affected through charges first against retained earnings, then against additional paid-in capital until it is reduced to zero and then to accumulated deficit.

Foreign Currency

      Our foreign subsidiary, Ribopharma AG (a German based company), has designated their local currency, the Euro, as their functional currency. Financial statements of this foreign subsidiary are translated to U.S. dollars for consolidation purposes using current rates of exchange for assets and liabilities; equity is translated using historical exchange rates; and revenue and expense amounts are translated using the average exchange rate for the period. Net unrealized gains and losses resulting from foreign currency translation are included in other comprehensive loss which is a separate component of stockholders’ deficit. Net realized gains and losses from foreign currency transactions are included in the consolidated statement of operations.

Comprehensive Loss

      Comprehensive income (loss) is comprised of net income (loss) and certain changes in stockholders’ equity that are excluded from net income (loss). The Company includes foreign currency translation adjustments in other comprehensive income (loss) for Ribopharma AG as the functional currency is not the U.S. dollar.

Net Income (Loss) Per Common Share

      The Company accounts for and discloses net income (loss) per common share in accordance with SFAS No. 128, Earnings Per Share (“SFAS No. 128”). Basic net income (loss) per common share is computed by dividing net income (loss) attributable to common stockholders by the weighted average number of common shares outstanding. Diluted net income (loss) per common share is computed by dividing net income (loss) attributable to common stockholders by the weighted average number of common shares and dilutive potential common share equivalents then outstanding. Potential common shares consist of shares issuable upon the exercise of stock options and warrants (using the treasury stock method), unvested restricted stock awards and the weighted average conversion of the preferred stock into shares of common stock (using the if-converted method).

Segment Information

      Management uses consolidated financial information in determining how to allocate resources and assess financial performance. For this reason, the Company has determined that they are principally engaged in one industry segment.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

      The following table presents total long-lived tangible assets by geographic area as of December 31, 2002 and 2003:

                   
December 31,

2002 2003


Long-lived tangible assets
               
 
United States
  $ 526     $ 2,342  
 
Germany
          2,414  
     
     
 
Total long-lived tangible assets
  $ 526     $ 4,756  
     
     
 

Recent Accounting Pronouncements

      In January 2003, the FASB issued FIN No. 46, Consolidation of Variable Interest Entities, an Interpretation of ARB No. 51 (“FIN No. 46”). The primary objectives of FIN No. 46 are to provide guidance on the identification of entities for which control is achieved through means other than through voting rights (variable interest entities) and to determine when and which business enterprise should consolidate the variable interest entities. The new model for consolidation applies to an entity which either (1) the equity investors (if any) do not have a controlling financial interest or (2) the equity investment at risk is insufficient to finance the entity’s activities without receiving additional subordinated financial support from the other parties. FIN No. 46 also requires enhanced disclosures for variable interest entities. FIN No. 46 applies immediately to variable interest entities created after January 31, 2003, and to variable interest entities in which an enterprise obtains an interest after that date. The standard as amended by FIN 46R, applies to the first fiscal year or interim period beginning after March 15, 2004 to variable interest entities in which an enterprise holds a variable interest that it acquired before February 1, 2003. The Company does not expect the adoption of FIN No. 46 to have a material impact on its consolidated financial statements.

      In May 2003, the FASB issued SFAS No. 150, Accounting for Certain Instruments with Characteristics of both Liabilities and Equity (“SFAS No. 150”). This statement establishes standards for how an issuer classifies and measures certain financial instruments with characteristics of both liabilities and equity. It requires that an issuer classify a financial instrument that is within its scope as a liability (or an asset in some circumstances). Many of these instruments were previously classified as equity. This statement is effective for financial instruments entered into or modified after May 31, 2003, and otherwise is effective at the beginning of the first interim period beginning after June 15, 2003. The Company’s adoption of this statement did not have a material impact on its consolidated financial statements.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

3.     Net Loss Per Common Share

      The following sets forth the computation of basic and diluted net loss per common share:

                           
Period from Cumulative from
Inception Inception
(June 14, 2002) (June 14, 2002)
through Year Ended through
December 31, December 31, December 31,
2002 2003 2003



Basic and diluted net loss per common share:
                       
 
Net loss attributable to common stockholders
  $ (4,884 )   $ (27,939 )   $ (32,823 )
 
Basic and diluted net loss per common share
  $ (14.74 )   $ (29.64 )   $ (36.12 )
 
Basic and diluted weighted average number of common shares outstanding
    331,341       942,665       908,695  
 
Pro forma basic and diluted net loss per common share (unaudited)
          $ (3.17 )        
 
Basic and diluted pro forma number of common shares outstanding (unaudited)
            7,977,685          

      As of December 31, 2002, 914,803 shares of restricted common stock remained subject to repurchase by the Company and, accordingly, were not included in the weighted average shares outstanding as of December 31, 2002. As of December 31, 2003, 645,385 shares of restricted common stock remained subject to repurchase by the Company and, accordingly, were not included in the weighted average shares outstanding as of December 31, 2003.

      The following potentially dilutive, common share equivalents were excluded from the calculation of diluted net loss per common share because their effect was antidilutive for each of the periods presented:

                         
Period from Cumulative from
Inception Inception
(June 14, 2002) (June 14, 2002)
through Year Ended through
December 31, December 31, December 31,
2002 2003 2003



Options
    81,892       1,693,530       1,693,530  
Warrants
    13,157       13,157       13,157  
Convertible preferred stock
    4,294,736       11,087,696       11,087,696  
Unvested restricted stock
    914,803       645,385       645,385  

      The Company’s historical capital structure is not indicative of its capital structure after the proposed IPO due to the anticipated automatic conversion of all shares of convertible preferred stock into shares of common stock concurrent with the closing of the Company’s proposed IPO. Accordingly, pro forma net loss per common share is presented for the year ended December 31, 2003.

      Pro forma basic and diluted net loss per common share is computed by dividing the net loss for the period by the pro forma number of unrestricted common shares outstanding, assuming the conversion of the Company’s Series A, Series B, and Series C convertible preferred stock into shares of the Company’s

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

common stock which will occur upon the closing of the Company’s proposed IPO, as if such conversion occurred at the date of the original issuance of the shares of convertible preferred stock. Pro forma diluted net loss per common share excludes options to purchase 1,693,530 shares of common stock, a warrant to purchase 25,000 shares of Series B redeemable convertible preferred stock which is assumed to be converted into a warrant to purchase 13,157 shares of common stock, and 645,385 shares of unvested restricted stock.

4.     Acquisition of Ribopharma AG

      On July 31, 2003, Alnylam acquired all the outstanding voting shares of Ribopharma AG (a German based company). Ribopharma’s results of operations are included in the operating results of the Company from the date of acquisition (July 31, 2003). Ribopharma is a development stage enterprise that is performing research and development associated with a new pharmaceutical active agent category siRNA. Alnylam purchased Ribopharma for access to its in-process research and development programs and its core technology. In addition, the acquisition of Ribopharma enabled Alnylam to satisfy the conditions in the technology license agreement with Garching Innovation GmbH (Note 14) to establish a German based company with comparable operational force and resources. Satisfaction of this condition enabled Alnylam to convert its co-exclusive rights under the Garching license to exclusive rights.

      The consideration consisted of $1,500 in cash and 815,376 shares of common stock. Based on a valuation performed of Ribopharma AG and the intangible assets acquired, the purchase price is estimated at $3,866 and is comprised of the following:

         
Cash paid
  $ 1,500  
Fair value of common stock issued
    1,947  
Acquisition costs
    419  
     
 
    $ 3,866  
     
 

      The fair value of the tangible and intangible assets acquired and liabilities assumed were recorded as follows:

         
Cash
  $ 1,798  
Other current assets
    41  
Fixed assets
    1,733  
Intangible assets
    8,684  
Accounts payable and accrued expenses assumed
    (1,300 )
Notes payable assumed
    (7,090 )
     
 
    $ 3,866  
     
 

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

      The appraised value of intangible assets acquired was below the total fair value of intangible assets acquired and would generally result in the recognition of goodwill. However, since Ribopharma AG is a development stage company and not considered a “business” as defined by the applicable accounting rules, this residual value was allocated proportionately to the long-lived assets acquired as follows:

                 
Initial Recorded
Value Fair Value


Purchased in-process research and development
  $ 2,155     $ 4,609  
Core technology
    1,700       3,638  
Workforce
    200       437  
Fixed assets
    552       1,733  
     
     
 
    $ 4,607     $ 10,417  
     
     
 

      The fair market value of the intangible assets acquired was based on a valuation and determined using an income approach. The core technology was valued using a relief from royalty methodology, the purchased in-process research and development was valued based on a discounted cash flow analysis and the workforce was valued using the avoided cost method.

      Purchased in-process technology was written off immediately upon the consummation of the acquisition and is included as a separate line in the Company’s statement of operations. Core technology and workforce are being amortized over their estimated useful lives of ten years and four years, respectively. The step up in the fixed assets is being amortized over four years, the remaining estimated useful life of these assets.

      During the year ended December 31, 2003 and for the period cumulative from inception (June 14, 2002) through December 31, 2003, the Company has recorded $197 of amortization expense related to the core technology and workforce intangibles of which the entire amount is included in research and development. During the year ended December 31, 2003 and for the period cumulative from inception (June 14, 2002) through December 31, 2003, the Company has recorded $123 of additional depreciation related to the increase in the recorded fair value of the fixed assets of which $111 is included in research and development and $12 is recorded in general and administrative expense.

Purchased In-Process Research and Development

      In connection with the Company’s acquisition of Ribopharma AG, the Company acquired two systemic RNAi programs related to the development of drugs targeting cancers such as malignant melanoma and pancreatic carcinoma. The Company expensed $4,609 of purchased in-process research and development associated with these programs. Management’s plans contemplate that the Company will conduct the first phase of clinical trials and then out-license the programs to a partner. Upon out-licensing, the partner is expected to bear all development costs and control clinical development. The Company expects to earn payments upon the attainment of clinical milestones by our partner and royalties on product sales. Since our partner will control the clinical development, we will be unable to influence the timing of the achievement of the milestones, if at all, or the estimated year of the product launch, if at all. The Company’s valuation assumed a development period of approximately 10 years, with milestones being earned during that period, which management believes is a typical horizon to bring a therapeutic drug to market. Actual results will differ from these estimates due to the uncertainties surrounding drug development.

      Management assumes responsibility for determining the in-process research and development valuation. The fair value assigned to purchase in-process research and development was estimated by discounting, to

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

present value, the probability-adjusted net cash flows expected to result once the technology has reached technological feasibility. A discount rate of 32 percent was applied to estimate the present value of the cash flows and is consistent with the overall risks of developing these projects. As of December 31, 2003, the technological feasibility of the projects had not been reached and management believes the assumptions included in the valuation analysis continue to be valid. In the allocation of the purchase price, the concept of alternative future use was considered. The projects under development have no current alternative future uses for the underlying technology in the event the projects are unsuccessful.

5.     Property and Equipment

                         
Estimated December 31,
Useful Life
(Years) 2002 2003



Laboratory equipment and software
    5     $ 398     $ 4,300  
Computer equipment
    3       59       270  
Furniture and fixtures
    5       55       431  
Leasehold improvements
    *       50       50  
Construction in process
                363  
             
     
 
              562       5,414  
Less — accumulated depreciation
            (36 )     (658 )
             
     
 
            $ 526     $ 4,756  
             
     
 

  *   shorter of asset life or lease term

     Depreciation expense was $36, $622, and $658 for the period from June 14, 2002 (date of inception) to December 31, 2002, year ended December 31, 2003 and for the period from the June 14, 2002 (date of inception) to December 31, 2003, respectively.

6.     Accrued Liabilities

      Accrued expenses consist of the following at December 31, 2002 and 2003:

                 
2002 2003


License
  $ 1,808     $  
Payroll and benefits
    18       823  
Professional fees
    112       344  
Other
    61       255  
Interest
          21  
     
     
 
    $ 1,999     $ 1,443  
     
     
 

      Accrued license fees represents the value of stock owed to Garching Innovation GmbH as of December 31, 2002 for the rights to use certain patented technology (Note 14).

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

7.     Notes Payable

Note Payable to a Bank

      In December 2002, the Company entered into an agreement with Silicon Valley Bank to establish an equipment line of credit for $2,500. The termination date for the agreement is April 30, 2004 upon adherence to certain conditions. All borrowings under the line of credit are collateralized by all corporate assets, excluding intellectual property. Borrowings bear interest at prime rate plus 0.25 percent (4.25 percent at December 31, 2003) and each advance is repayable over a 42 month period from the date of each advance. On the maturity of each equipment advance under the line of credit, the Company shall pay, in addition to the paid principal and interest, an additional amount of eight percent of the original principal. The Company is accruing this eight percent over each of the respective drawdown repayment periods as additional interest expense, which amounted to $21 during the year ended December 31, 2003.

      As of December 31, 2003, future cash payments under the note payable to a bank are as follows:

         
Year Ended December 31,

2004
  $ 645  
2005
    645  
2006
    589  
2007
    244  
     
 
      2,123  
Less: portion representing interest
    264  
     
 
      1,859  
Less: current portion of note payable
    558  
     
 
Note payable, net of current portion
  $ 1,301  
     
 

      The terms of the agreement include certain covenants which limit the Company’s ability to sell or transfer certain assets or businesses or to pay dividends or other distributions above specified limits. The Company made four drawdowns on the line of credit from January 1, 2003 to December 31, 2003, amounting to a total of $2,098, of which $239 has been paid as of December 31, 2003. As of December 31, 2003, $402 is available on the line of credit to finance additional equipment.

      In connection with the agreement, the Company issued Silicon Valley Bank a warrant to purchase 25,000 shares of Series B redeemable convertible preferred stock at an exercise price of $2.50 per share. 12,500 of the shares were earned at closing and the remaining 12,500 were earned when the Company’s borrowings exceeded $1,250. The Company recorded the fair value of these warrants of $57 as a discount to the note payable which is being amortized to interest expense over the repayment term of the first advance of 42 months. The fair value of each warrant was calculated using the Black-Scholes option pricing model with the following assumptions: 100% volatility, risk-free interest rate of 3.8%, no dividend yield, and a ten-year term. During the year ended December 31, 2003 and the cumulative period from inception (June 14, 2002) through December 31, 2003, the Company recorded $16 of interest expense related to this deferred financing costs.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Note Payable to Ribopharma AG Shareholder

      Upon the acquisition of Ribopharma AG, Alnylam Pharmaceuticals, Inc. assumed a note payable and accrued interest of $4,795 to a Ribopharma shareholder and an obligation to provide common shares based on prior terms of the note valued at $119, both of which were included in assumed liabilities upon the acquisition date. The note payable of $4,538 and accrued interest of $257 was exchanged for 1,917,857 shares of Series B preferred stock. Additionally, the 49,496 shares of Alnylam Pharmaceuticals, Inc.’s common stock were issued to satisfy the obligation to provide shares. There were no amounts outstanding under this note payable as of December 31, 2003.

Ribopharma AG Notes

      Upon the acquisition of Ribopharma AG, Alnylam Pharmaceuticals, Inc. assumed notes payable amounting to $2,551. The Company repaid $2,964 in August 2003, which included accrued interest of $413. There are no amounts outstanding under these notes as of December 31, 2003.

 
8. Redeemable Convertible Preferred Stock

      The Company’s Series A and Series B redeemable convertible preferred stock and Series C convertible preferred stock, $0.0001 par value, consists of the following as of December 31, 2002 and 2003:

                 
2002 2003


Series A redeemable convertible preferred stock; 2,000,010 and 3,000,010 shares authorized, issued and outstanding at December 31, 2002 and 2003, respectively (liquidation preference of $3,000)
  $ 2,081     $ 3,094  
Series B redeemable convertible preferred stock; 6,200,000 and 16,672,078 shares authorized, 6,160,000 and 16,561,845 issued and outstanding at December 31, 2002 and 2003, respectively (liquidation preference of $41,405)
    16,003       44,641  
Series C convertible preferred stock; no shares authorized, issued and outstanding at December 31, 2002, 2,600,000 shares authorized, 1,504,825 shares issued and outstanding at December 31, 2003 (liquidation preference of $7,524)
          7,454  
     
     
 
    $ 18,084     $ 55,189  
     
     
 

      As of December 31, 2003, the Company has 22,272,088 authorized shares of preferred stock, of which 3,000,010 shares are designated as Series A redeemable convertible preferred stock (“Series A preferred stock”), 16,672,078 shares are designated as Series B redeemable convertible preferred stock (“Series B preferred stock”), and 2,600,000 shares are designated as Series C convertible preferred stock (“Series C preferred stock”) (collectively, the “preferred stock”).

      The Company sold 1,000,000 and 2,000,010 shares of Series A preferred stock resulting in gross proceeds of $1,000 and $2,000 in July 2003 and June 2002, respectively. In July 2003 and July 2002, the Company sold 10,401,845 and 6,160,000 shares of Series B preferred stock for $2.50 per share resulting in total consideration of $26,005 and $15,400, respectively. In September 2003 and October 2003, the Company issued a total of 1,504,825 shares of Series C preferred stock for gross proceeds of $7,454.

      The Company issued 1,000,000 shares of Series A preferred stock in July 2003, which was convertible into common stock at a value of $1,260 at the date of issuance. As a result, the Company was required to record a beneficial conversion feature charge of approximately $260 which was recorded as a discount on the Series A preferred stock and an increase to additional paid-in capital. This discount will be accreted over the

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

period of the first available redemption of the Series A preferred stock through periodic charges. During the year ended December 31, 2003, the Company recorded $27 of accretion related to the amortization of this discount. This accretion will increase the net loss attributable to common stockholders.

      As of December 31, 2003, the rights, preferences, and privileges of the Company’s preferred stock are listed below:

Voting

      The holders of preferred stock are entitled to vote, together with the holders of common stock, on all matters submitted to stockholders for a vote. Each preferred stockholder is entitled to the number of votes equal to the number of shares of common stock into which each preferred share is then convertible at the time of such vote.

Dividends

      The Company may declare and pay dividends as and when determined by the Company’s Board of Directors. As of December 31, 2003, no dividends had been declared or paid by the Company.

Conversion

      Each share of preferred stock is convertible at the option of the holder, at any time and from time to time into 0.526 of a share of common stock adjusted for certain dilutive events. The conversion price for the Series A, Series B and Series C preferred stock is equal to the purchase price of $1.00, $2.50 and $5.00, respectively. All shares of preferred stock shall be automatically converted into shares of common stock upon the closing of an underwritten initial public offering with gross proceeds of not less than $25,000.

Liquidation

      In the event of any voluntary or involuntary liquidation, dissolution or winding-up of the corporation, as defined, holders of the Series A and Series B preferred stock then outstanding will be entitled to be paid an amount equal to $1.00 per share and $2.50 per share, respectively, plus any dividends declared but unpaid on such shares, prior to any payment to common shareholders. Holders of the Series C convertible preferred stock will receive liquidation preference equal to $5.00 per share only after the Series A and Series B shareholders have received full payment of the Series A and Series B preference amounts. Amounts remaining after the preference payments to the preferred stockholders, if any, will be shared ratably among the holders of common stock.

Redemption

      Subject to a written election of holders of at least two-thirds in voting power of the outstanding shares of preferred stock, the Company will be required to redeem, subject to certain conditions, on July 25, 2007, July 25, 2008 and July 25, 2009, each a Mandatory Redemption Date, the percentage of Series A and Series B preferred stock, as listed in the following table, at a price per share equal to $1.00 and $2.50,

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

respectively, plus an additional amount equal to simple interest of ten percent per annum per year from the issuance date.

         
Mandatory Maximum Portion of Shares of
Redemption Date Preferred Stock to be Redeemed


July 25, 2007
    33%  
July 25, 2008
    67%  
July 25, 2009
    100%  

      The Company initially recorded redeemable convertible preferred stock at fair value at the date of issuance. Where the carrying amount of the redeemable convertible preferred stock was less than the redemption amount, the carrying amount is increased by periodic accretion so that the carrying amount would equal the redemption amount at the first available redemption date. The carrying amount is further periodically increased by amounts representing the ten percent per annum interest feature. Accretion of the Company’s redeemable convertible preferred stock, including the ten percent interest during the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, and for the period cumulative from inception (June 14, 2002) through December 31, 2003, was as follows:

                         
Period from Cumulative from
Inception Inception
(June 14, 2002) (June 14, 2002)
through Year Ended through
December 31, December 31, December 31,
2002 2003 2003



Accretion of Series A preferred stock
  $ 102     $ 273     $ 375  
Accretion of Series B preferred stock
    646       2,633       3,279  
     
     
     
 
    $ 748     $ 2,906     $ 3,654  
     
     
     
 

      As of December 31, 2003, the redemption value of the Series A and Series B preferred stock was $3,342 and $44,670, respectively.

      The Series C convertible preferred stock is not subject to mandatory or optional redemption; however, there are circumstances outside the control of the Company that could result in the holders of the Series C preferred stock being redeemed upon certain deemed liquidation events in limited circumstances. Accordingly, the Series C preferred stock has been classified as redeemable convertible preferred stock. The Series C preferred stock is not being accreted because there is no mandatory redemption date. The Series C preferred stock does have a liquidation value of $7,524 at December 31, 2003.

 
9. Common Stock

Common Stock

      As of December 31, 2003, the Company had 34,739,392 shares of common stock authorized, and 2,251,482 shares issued. As of December 31, 2003, the Company has reserved 11,100,884 shares for issuance to preferred stockholders in the event that the redeemable convertible preferred stock and warrant to purchase 25,000 shares of Series B preferred stock is converted into common stock. In addition, the Company has reserved 2,236,842 shares of common stock for future issuance upon the exercise of common stock options.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

      In July 2003, Alnylam Pharmaceuticals, Inc. issued 815,376 shares of common stock for the acquisition of Ribopharma AG (Note 4).

Founders’ Shares

      In June 2002, the Company sold 1,294,716 shares of common stock to the Company’s founders, including certain nonemployees, in exchange for $0.0001 per share, which represented the fair market value of the common stock on the date of sale, as determined by management. The founders’ common stock is subject to restricted stock agreements, which include various restrictions, including the right of the Company to repurchase declining percentages of the shares at the original issuance price during the four-year period following issuance if the employee or nonemployee ceases to provide services to the Company for any reason. In July 2002, the Company sold 47,368 shares of common stock to a consultant for $0.19 per share, which represented the fair market value of the common stock on the date of sale, as determined by management. This common stock is subject to a restricted stock agreement, which includes various restrictions, including the right of the Company to repurchase declining percentages of the shares at the original issuance price during the four-year period following issuance if the consultant ceases to perform services.

      In connection with the restricted stock award issued to nonemployees, the Company has recorded cumulative deferred compensation of $3,791, which represents the cumulative fair value of the restricted stock awards measured in accordance with SFAS No. 123 and EITF 96-18. Shares remaining unvested or subject to forfeiture for nonemployees still providing services are subject to a mark-to-market adjustment during each reporting period prior to vesting in full. The deferred compensation will be recorded as an expense over the vesting period of the underlying restricted stock using the method prescribed by FASB Interpretation No. 28 (FIN 28), Accounting for Stock Appreciation Rights and Other Variable Stock Options or Award Plans . The Company recorded $172, $2,241 and $2,413 of compensation expense during the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, and for the period cumulative from inception (June 14, 2002) through December 31, 2003, respectively, related to the amortization of the deferred compensation. The deferred compensation balance at December 31, 2002 and 2003, respectively, related to these awards was $161 and $1,217. Since the fair market value of the common stock to nonemployees is subject to change in the future, the compensation expense recognized during the year ended December 31, 2003, and prior years may not be indicative of future compensation charges.

Board of Directors Actions

      The Company’s board of directors approved, subject to stockholder approval, the following on February 23, 2004:

  •  Amendment to the certificate of incorporation increasing the number of authorized shares of common stock, $0.0001 par value per share, from 34,739,392 shares to 125,000,000 shares.
 
  •  Amendment and restatement of the certificate of incorporation, subject to the closing of the Company’s initial public offering, the number of authorized shares of common stock, $0.01 par value per share, will be 125,000,000 and the number of authorized shares of preferred stock, $0.01 par value per share, will be decreased to 5,000,000. The board of directors will have the authority to issue such shares of preferred stock in one or more series and fix the relative rights and preferences without vote or action by the stockholders.

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)
 
10. Stock Option Plan

      In June 2002, the Company adopted the 2002 Stock Incentive Plan (the “2002 Stock Plan”), which was terminated in November 2002, and replaced with the Alnylam U.S., Inc. 2002 Employee, Director and Consultant Stock Plan (the “2002 Plan”). All options previously granted under the 2002 Stock Plan were canceled and new options for the same number of shares, vesting provisions and exercise price were granted under the 2002 Plan. In September 2003, the Company adopted the Alnylam Pharmaceuticals, Inc. 2003 Employee, Director and Consultant Stock Plan (the “2003 Plan”). As of December 31, 2003, an aggregate of 2,236,842 shares of common stock were authorized for issuance under the 2002 and 2003 plans, of which 498,761 were available for future grant at December 31, 2003.

      The plans provide for the granting of incentive stock options (“ISOs”) and nonqualified stock options. Stock options may be granted to the Company’s employees, officers, directors, consultants and advisors, as defined. ISOs may be granted at no less than fair market value (“FMV”) on the date of grant, as determined by the Company’s Board of Directors (no less than 110 percent of FMV on the date of grant for 10 percent or greater stockholders), subject to limitations, as defined. Each option shall be exercisable at such times and subject to such terms as determined by the Board of Directors and expires within ten years of issuance.

      Options granted generally vest at a rate of 25 percent on the last of the month in which the first anniversary of the grant date occurs and 6.25 percent of the shares at the end of each successive three-month period until fully vested. In January 2004, the Company granted an option to the chief executive officer to purchase 105,263 shares of common stock at an exercise price of $0.95 per share that vest as to 25 percent of the shares on the first anniversary of the date of grant and as to an additional 6.25 percent of the shares at the end of each three-month period thereafter, except that it shall vest as to 100 percent of the shares upon an initial public offering.

      The following table summarizes the activity of the Company’s stock option plans:

                         
Number of
Options Weighted
Available for Average
Future Number of Exercise
Grant Options Price



Outstanding at inception (June 14, 2002)
              $  
Granted
            163,788       0.48  
Exercised
                   
Canceled
            (81,894 )     0.48  
             
     
 
Outstanding at December 31, 2002
    681,263       81,894       0.48  
Granted
            1,656,187       0.53  
Exercised
            (44,526 )     0.48  
Canceled
                     
             
     
 
Outstanding at December 31, 2003
    498,761       1,693,555     $ 0.53  
             
     
 
Exercisable at December 31, 2003
            192,711     $ 0.48  
             
     
 
Exercisable at December 31, 2002
            842     $ 0.19  
             
     
 

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

      The Company has also committed to issuing an option to purchase 26,315 shares of common stock to an employee at the then fair market value upon entering into a strategic alliance, as defined. As of December 31, 2003, this event had not been achieved.

      All options granted during the period from inception (June 14, 2002) through December 31, 2002, had an exercise price that was equal to the fair market value of common stock on the date of grant. The weighted average fair value of these options granted at fair market value during the period from inception (June 14, 2002) through December 31, 2002 was $0.06. All options granted during the year ended December 31, 2003, had an exercise price that was less than the fair value of common stock on the date of grant. The weighted average fair value of these options was $2.38.

      The following table summarizes information about stock options outstanding and exercisable at December 31, 2003:

                                             
Options Outstanding

Weighted Options Exercisable
Average
Remaining Weighted Weighted
Contractual Average Average
Exercise Number Life Exercise Number Exercise
Price Outstanding (in Years) Price Exercisable Price






$ 0.48       1,461,977       9.27     $ 0.48       192,711     $ 0.48  
  0.95       231,578       9.83       0.95             0.95  
         
                     
         
          1,693,555                       192,711          
         
                     
         

      During the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, and the period cumulative from inception (June 14, 2002) through December 31, 2003, in connection with the grant of common stock options to employees, the Company recorded deferred stock compensation of approximately zero, $3,338 and $3,338, respectively, representing the difference between the exercise price and the fair market value of the Company’s common stock on the date the stock options were granted. During the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003 and the period cumulative from inception (June 14, 2002) through December 31, 2003, the Company recorded amortization of deferred stock compensation of zero, $667 and $667, respectively, and $2,671 remains unamortized at December 31, 2003. The Company will be recognizing the fixed deferred stock compensation over the remaining vesting period of the options, subject to forfeitures should the employees terminate, in accordance with the method prescribed by FIN 28. The anticipated future amortization of deferred stock compensation related to employee option grants as of December 31, 2003 is as follows:

         
Year Ended December 31,

2004
  $ 1,416  
2005
    744  
2006
    381  
2007
    129  
     
 
    $ 2,670  
     
 

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Table of Contents

ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

      In January 2004, the Company granted 342,366 common stock options to employees with an exercise price of $0.95 per share. The Company will record additional deferred compensation for the difference between the option exercise price and its fair value.

      In connection with stock options granted to nonemployees for services during the year ended December 31, 2003, the Company has recorded aggregate deferred compensation of approximately $1,178, which represents the fair value of nonemployee grants. The deferred compensation will be recorded as an expense over the vesting period of the underlying stock options using the method prescribed by FIN 28. At the end of each financial reporting period prior to vesting, the value of these options (as calculated using the Black-Scholes option pricing model) will be remeasured using the then current fair value of the Company’s common stock. At that point, deferred compensation and the noncash compensation recognized during that period will be adjusted accordingly. Accordingly, since the fair market value of the common stock options granted to nonemployees is subject to change in the future, the amount of future compensation expense recognized will be adjusted up until the stock options, are fully vested. Stock-based compensation expense related to these nonemployee options for the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, and the period cumulative from inception (June 14, 2002) through December 31, 2003, was $0, $547 and $547, respectively.

 
11. Income Taxes

      Deferred income taxes reflect the tax effects of temporary differences between the carrying amounts of assets and liabilities for financial reporting and income tax purposes. A valuation allowance is established when uncertainty exists as to whether all or a portion of the net deferred tax assets will be realized. Components of the net deferred tax asset as of December 31, 2002 and 2003, are approximately as follows:

                   
2002 2003


Deferred Tax Assets:
               
 
Net operating loss carryforwards
  $ 243     $ 2,628  
 
Research and development credits
    33       238  
 
Capitalized research and development and start-up costs
    585       6,239  
 
Deferred revenue
          761  
 
Other
    1       839  
     
     
 
 
Total deferred tax assets
    862       10,705  
Deferred Tax Liabilities:
               
 
Intangible assets
          (1,788 )
 
Deferred tax asset valuation allowance
    (862 )     (8,917 )
     
     
 
Net deferred tax assets
  $     $  
     
     
 

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ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

      The Company’s effective income tax rate differs from the statutory federal income tax rate as follows for the period from inception (June 14, 2002) through December 31, 2002 and the year ended December 31, 2003:

                 
Period from
Inception
(June 14,
2002)
through Year Ended
December 31, December 31,
2002 2003


Federal tax benefit rate
    34.0 %     34.0 %
State tax benefit, net of federal benefit
    6.2       5.0  
Permanent items
    0.8       (2.2 )
Purchased in-process research and development
          (6.0 )
Federal research credits
    0.9       0.6  
Valuation allowance
    (41.9 )     (31.4 )
     
     
 
Effective income tax rate
    0.0 %     0.0 %
     
     
 

      As required by SFAS No. 109, management of the Company has evaluated the positive and negative evidence bearing upon the realizability of its deferred tax assets. Management has concluded, in accordance with the applicable accounting standards, that it is more likely than not that the Company may not realize the benefit of its deferred tax assets. Accordingly, the deferred tax assets have been fully reserved. Management reevaluates the positive and negative evidence on an annual basis.

      At December 31, 2003, the Company had federal and state net operating loss carryforwards of approximately $1,494 and $1,359 available, respectively, to reduce future taxable income and which will expire at various dates beginning in 2007 through 2023. At December 31, 2003, federal and state research and development credit carryforwards were approximately $164 and $112, respectively, available to reduce future tax liabilities, and, which expire at various dates beginning in 2017 through 2023. Ownership changes, as defined in the Internal Revenue Code, including those resulting from the issuance of common stock in connection with the Company’s planned initial public offering, may limit the amount of net operating loss and tax credit carryforwards that can be utilized to offset future taxable income or tax liability. The amount of the limitation is determined in accordance with Section 382 of the Internal Revenue Code.

12.     Commitments and Contingencies

Operating Leases

      The Company leases office and laboratory space in Cambridge, Massachusetts and Kulmbach, Germany (beginning on July 31, 2003 the date of acquisition of Ribopharma AG), under noncancelable operating lease agreements. Total rent expense under these operating leases was $92, $966, and $1,058 for the period from June 14, 2002 (date of inception) through December 31, 2002, for the year ended December 31, 2003 and for the period cumulative from inception (June 14, 2002) through December 31, 2003, respectively.

      In September 2003, the Company entered into an operating lease to rent office space in Cambridge, Massachusetts through September 2011. Rental payments begin upon the earlier of April 1, 2004 or the date the Company takes occupancy. The Company can extend the lease for two successive five-year extensions.

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ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Pursuant to the terms of the lease agreement, the Company is required to deposit $2,313 and has thus classified this amount as long-term restricted cash in the accompanying consolidated balance sheet.

      Future minimum lease payments under this noncancelable lease are approximately as follows:

           
Minimum
Lease
Year Ending December 31, Payments


2004
  $ 1,637  
2005
    1,910  
2006
    2,072  
2007
    2,110  
2008
    2,125  
Thereafter
    5,392  
     
 
  Total   $ 15,246  
     
 

Commitment to Ribopharma AG Shareholders

      In connection with the acquisition of Ribopharma AG, the Company agreed to provide the two shareholders of Ribopharma AG who received cash and common stock in the acquisition with a nonrecourse loan to cover any tax contingencies the shareholders may incur as a result of the acquisition. If the loan is provided, the note will bear interest at four percent per annum and be payable upon certain liquidity events, as defined. In addition to the loan commitment, the Company has also entered into an indemnity agreement whereby the Company will indemnify the shareholders for any taxes payable as a result of making the loan to the Ribopharma shareholders up to a maximum of approximately $179 for each shareholder as of December 31, 2003. As of December 31, 2003, the Company has not been required to provide the two shareholders with a loan or provide any amounts under the indemnity agreements. With respect to the indemnity, the Company has issued a letter of credit to the two shareholders amounting to $354 related to the potential indemnity that the Company has with the two shareholders. The required amount of the letter of credit is collateralized by restricted funds maintained by the Company at the bank issuing the letter of credit. As a result, the Company has classified this amount as restricted cash in the accompanying consolidated balance sheet.

      In connection with the employment agreements of the same two Ribopharma AG employees, the Company has committed to paying a one-time payment to each employee of $250 upon the issuance of a specific patent in the United States of America. This contingent payment will be paid and expensed upon the issuance of the patent.

Consulting Agreements with Founders

      The Company has consulting agreements with certain founding nonemployee stockholders, subject to certain termination rights. During the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, and the period cumulative from inception (June 14, 2002) through December 31, 2003, the Company paid the founders $128, $282 and $410, respectively, in connection with these consulting agreements. The Company’s aggregate remaining cash commitment pursuant to such consulting agreements amounted to approximately $360 at December 31, 2003.

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ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Guarantees

      In November 2002, the FASB issued FIN No. 45, Guarantor’s Accounting and Disclosure Requirements for Guarantees, Including Indirect Guarantees of Indebtedness of Others an interpretation of FASB Statements No. 5, 57, and 107 and rescission of FASB Interpretation No 34 . The Interpretation requires additional disclosures to be made by a guarantor in its annual financial statements about its obligations under certain guarantees it has issued. The accounting requirements for the initial recognition of guarantees are applicable on a prospective basis for guarantees issued or modified after December 31, 2002. The adoption of FIN No. 45 did not have a material effect on the Company’s financial statements.

      The Company is also a party to a number of agreements entered into in the ordinary course of business, which contain typical provisions, which obligate the Company to indemnify the other parties to such agreements upon the occurrence of certain events. Such indemnification obligations are usually in effect from the date of execution of the applicable agreement for a period equal to the applicable statute of limitations. The aggregate maximum potential future liability of the Company under such indemnification provisions is uncertain. Since its inception, the Company has not incurred any expenses as a result of such indemnification provisions. Accordingly, the Company has determined that the estimated aggregate fair value of its potential liabilities under such indemnification provisions is minimal and has not recorded any liability related to such indemnification provisions as of December 31, 2003.

Legal Proceedings

      The Company may periodically become subject to legal proceedings and claims arising in connection with on-going business activities, including being subject to claims or disputes around patents that have been issued or are pending in the field of research the Company is focused on. The Company does not believe that there were any material claims against the Company as of December 31, 2003.

13.     401(k) Savings Plan

      The 401(k) Plan allows participants to defer up to 15 percent of their annual compensation and with proper notice up to 100 percent of their compensation in the final month of the plan year on a pretax basis and subject to IRC limits. The plan covers substantially all of the employees who meet minimum age and service requirements. The Company may make matching contributions to the 401(k) Plan in amounts determined by the Company’s Board of Directors. The Company did not contribute to the 401(k) plan during the period from inception (June 14, 2002) through December 31, 2002, the year ended December 31, 2003, or the period cumulative from inception (June 14, 2002) through December 31, 2003.

14.     Significant Agreements

Garching Innovation GmbH License Agreement

      In December 2002, the Company entered into a co-exclusive license with Garching Innovation GmbH (“Garching”) for the worldwide rights to use and sublicense certain patented technology to develop and commercialize therapeutic products and related applications. The Company also obtained the rights to use without the right to sublicense, the technology for all diagnostic uses other than for the purposes of therapeutic monitoring. In consideration for the rights to license this technology, the Company issued to Garching 723,240 shares of Series B redeemable convertible preferred stock in 2003. As of December 31, 2002, the Company valued this consideration at the Series B redeemable convertible preferred stock issuance price of $2.50 per share for total consideration of $1,808. As the Company had not issued the shares as of December 31, 2002, the Company has included this amount in accrued expenses within the accompanying

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ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

balance sheet and recorded the consideration as license fee expense as the technology has not reached technological feasibility and does not have any alternative future use. In July 2003, the Company issued the 723,240 shares of Series B redeemable preferred stock to Garching. The Company will also be required to pay future royalties on net sales of all therapeutic and prophylactic products developed with the technology.

      The Company was also given the ability to acquire the remaining 50 percent exclusive rights to the technology that had not been previously granted to the Company by Garching upon the establishment of a German-based company with comparable operational work force and resources. The Company successfully obtained the remaining 50 percent exclusive rights upon the acquisition of Ribopharma AG in July 2003 (Note 4) and in consideration for the remaining rights to this technology, issued 158,605 shares of Series B redeemable convertible preferred stock. These shares were determined to have a fair value of $397 and the value was recorded as license fee expense. The Company is also reserving an additional 16,328 shares of Series B redeemable convertible preferred stock which is contingently issuable if a specified claim is obtained related to one of its licensed patents.

Collaboration Agreement with Merck & Co.

      In September 2003, the Company entered into a five-year strategic alliance with Merck & Co. (“Merck”) to develop RNAi-based technology and therapeutics. For technology development, Merck and Alnylam each committed to devote resources, including full-time equivalents and expertise to the collaborative development of advanced RNAi technology. Merck will have rights to use this technology solely for the identification and validation of drug targets; Alnylam will have rights to use it for these purposes and also for therapeutic purposes. For therapeutics development, Merck agreed to provide Alnylam with twelve proprietary drug targets as potential targets for siRNA therapeutics. Alnylam has the right, but not the obligation, to develop siRNA drug candidates against each target provided by Merck. If Alnylam advances a candidate to a defined point in preclinical development, Alnylam and Merck will then decide whether Alnylam, Merck or the two companies together will proceed with the further development and commercialization of that candidate. For each drug candidate in whose development Merck decides to participate, it will make a cash payment to Alnylam at the time of its decision, and will also reimburse Alnylam for a portion of the costs Alnylam has so far incurred on that candidate.

      In connection with this alliance, Merck made an upfront cash payment of $2,000 and a $5,000 equity investment in Alnylam during 2003. Further cash payments are due from Merck in each of 2004 and 2005, based upon the continuation of the alliance. In addition, if a prespecified technology milestone is achieved in the RNAi technology development program, Merck will make an additional cash payment and an additional equity investment. The Company is recognizing the revenue related to the $2,000 upfront payment ratably over the period of continuing performance obligations, which is estimated as six years. As of December 31, 2003, the Company has recognized approximately $111 as revenue and has deferred approximately $1,900.

15.     Subsequent Event

Equipment Line of Credit

      On March 30, 2004, the Company entered into an agreement with Lighthouse Capital Partners V, L.P. to establish an equipment line of credit for $10,000. The company has the ability to draw down amounts under the line of credit through June 30, 2005 upon adherence to certain conditions. All borrowings under the line of credit are collateralized by the assets financed. Borrowings bear interest at prime rate plus 3 percent and each advance is repayable over at least a 48 month period from the date of each advance. On the maturity of each equipment advance under the line of credit, the Company is required to pay, in addition to the paid principal and interest, an additional amount of 11.5 percent of the original principal. Alnylam also issued

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ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

Lighthouse a warrant to purchase 100,000 shares of Series C convertible preferred stock at an exercise price of $5.00 per share.

      In conjunction with entering into the agreement, Alnylam paid off the remaining balance of the loan with Silicon Valley Bank via an initial draw in the amount of the payoff balance. As a result of the early termination of the Silicon Valley Bank loan, Alnylam paid additional interest of $168.

Isis Pharmaceuticals, Inc. Collaboration and License Agreement

      In March 2004, Alnylam entered into a collaboration and license agreement with Isis Pharmaceuticals, Inc. Isis granted Alnylam licenses to its current and future patents and patent applications relating to chemistry and to RNA-targeting mechanisms for the research, development and commercialization of double-stranded RNA products. Alnylam has the right to use Isis technologies in its development programs or in collaborations and Isis has agreed not to grant licenses under these patents to any other organization for the discovery, development and commercialization of double-stranded RNA products designed to work through a RNAi mechanism, except in the context of a collaboration in which Isis plays an active role. Alnylam granted Isis non-exclusive licenses to its current and future patents and patent applications relating to RNA-targeting mechanisms and to chemistry for research use. Alnylam also granted Isis the exclusive or co-exclusive right to develop and commercialize double-stranded RNA products developed using RNAi technology against a limited number of targets. In addition, Alnylam granted Isis non-exclusive rights to research, develop and commercialize single-stranded RNA products.

      Under the terms of the agreement, Alnylam agreed to pay Isis an upfront license fee of $5,000, $3,000 of which was paid upon signing of the agreement and the remaining $2,000 of which is due on January 3, 2005. Alnylam also agreed to pay royalties and milestones to Isis on any products that Alnylam or a collaborator develop utilizing Isis intellectual property. In addition, Alnylam agreed to pay to Isis a percentage of some fees from strategic collaborations it may enter into that include access to the Isis intellectual property. In conjunction with the agreement, Isis purchased 1,666,667 shares of series D preferred stock of Alnylam for $10,000. Isis also agreed to pay Alnylam a license fee, royalty and milestone payments on any product developed by Isis or a collaborator that utilizes its intellectual property. The agreement also gives Alnylam an option to use Isis’ manufacturing services for RNA-based therapeutics.

      The agreement with Isis also gives Alnylam the exclusive right to grant sub-licenses for Isis technology to third parties with whom Alnylam is not collaborating. Alnylam may include these sub-licenses in its InterfeRx licenses and research reagent and services licenses. If a license includes rights to Isis’ intellectual property, Alnylam will share revenues from that license equally with Isis.

Contractor Commitment

      On March 26, 2004, the Company entered into an agreement with a contractor for the build out of the Company’s new facility in Cambridge, Massachusetts. The contract contains a guaranteed maximum price of $5,401. As a part of the lease agreement signed with the landlord, the landlord will reimburse the Company for certain of the costs of the build out, up to a maximum of $2,978.

Actions of the Board of Directors

      The Company’s Board of Directors approved the following on March 30, 2004:

  •  Effective upon the closing of an initial public offering, no further stock options or other equity awards will be granted under the 2002 Plan or 2003 Plan;

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ALNYLAM PHARMACEUTICALS, INC.
(A Development Stage Enterprise)

Notes to Consolidated Financial Statements — (Continued)

($ in thousands, except per share amounts)

  •  Effective upon the effective date of the registration statement relating to the initial public offering and subject to shareholder approval, authorization of the 2004 Stock Incentive Plan (the “2004 Plan”) with 1,578,947 shares authorized for future issuance under the plan plus an additional amount authorized based on the remaining shares available under the 2002 Plan and 2003 Plan as of the closing of the initial public offering. The 2004 Plan includes a nonemployee director stock option program under which each eligible nonemployee director will be entitled to receive an annual grant of options to purchase 7,105 shares of common stock upon his or her initial appointment to the board of directors and a subsequent annual grant of an option to purchase 5,263 shares of common stock based on continued service; and
 
  •  Authorization of a 2004 Employee Stock Purchase Plan with 315,789 shares authorized for issuance under the plan commencing after the closing of an initial public offering and subject to shareholder approval.

      On May 7, 2004, the Company effected a reverse 1-for-1.9 split of all outstanding shares of common stock. All common share and per share data presented in the accompanying consolidated financial statements and the notes thereto have been retroactively restated to reflect this event.

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Table of Contents

Report of Independent Auditors

To the Supervisory Board and Board of Directors of

Ribopharma AG

      In our opinion, the accompanying balance sheets and the related statements of operations, stockholders’ deficit and cash flows present fairly, in all material aspects, the financial position of Ribopharma AG (a development stage enterprise) at December 31, 2001 and 2002 and the results of its operations and its cash flows for the years then ended and for the period from June 16, 2000 (inception) through December 31, 2002, in accordance with accounting principles generally accepted in the United States of America. These financial statements are the responsibility of the Company’s management; our responsibility is to express an opinion on these financial statements based on our audits. We conducted our audit of these financial statements in accordance with auditing standards generally accepted in the United States of America, which require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. An audit includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements, assessing the accounting principles used and significant estimates made by management and evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion.

PricewaterhouseCoopers

Gesellschaft mit beschränkter Haftung
Wirtschaftsprüfungsgesellschaft
         
/s/ PRICE
  /s/ MCMAHON    

 
   
 
Chartered Accountant
  Chartered Accountant    

Munich, December 23, 2003

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Table of Contents

RIBOPHARMA AG

(A Development Stage Enterprise)
 
Balance Sheets
                               
December 31, June 30,


2001 2002 2003



(Unaudited)
Assets
Current assets
                       
 
Cash and cash equivalents
    119,598       2,025,601       1,092,815  
 
Prepaid expenses and other current assets
    18,211       46,606       56,536  
     
     
     
 
     
Total current assets
    137,809       2,072,207       1,149,351  
Property and equipment, net
    310,684       573,759       702,161  
     
     
     
 
     
Total assets
    448,493       2,645,966       1,851,512  
     
     
     
 
Liabilities and Stockholders’ Deficit
Current liabilities
                       
 
Accounts payable
    25,861       77,438       59,391  
 
Accrued liabilities
    78,995       102,100       227,233  
 
Other current liabilities
    40,976       38,207       69,369  
 
Accrued interest on notes payable
    35,885       131,540       509,446  
 
Current portion of note payable from stockholder
          2,000,000       3,000,000  
 
Current portion of notes payable (Note 6)
    464,000             2,249,584  
 
Deferred revenue
                35,650  
 
Deferred grant
    60,594       73,983       73,983  
     
     
     
 
     
Total current liabilities
    706,311       2,423,268       6,224,656  
     
     
     
 
Notes payable, net of current portion (Note 6)
    849,469       2,249,584        
Deferred grant, net of current portion
    177,293       177,887       140,440  
     
     
     
 
     
Total liabilities
    1,026,762       2,427,471       140,440  
     
     
     
 
Stockholders’ deficit
                       
 
Common stock of  1.00 par value
                       
   
Number of shares issued and outstanding 55,560, 68,560, and 68,560 at December 31, 2001, 2002, and June 30, 2003 (unaudited), respectively
    55,560       68,560       68,560  
 
Additional paid-in capital
          1,208,440       1,208,440  
 
Deficit accumulated during the development stage
    (1,340,140 )     (3,481,773 )     (5,790,584 )
     
     
     
 
     
Total stockholders’ deficit
    (1,284,580 )     (2,204,773 )     (4,513,584 )
     
     
     
 
     
Total liabilities and stockholders’ deficit
    448,493       2,645,966       1,851,512  
     
     
     
 

The accompanying notes are an integral part of these financial statements.

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RIBOPHARMA AG

(A Development Stage Enterprise)
 
Statements of Operations
                                                   
Period from
June 16, 2000
(Inception) Period From
For the Year Ended through For the Six Months June 16, 2000
December 31, December 31, Ended June 30, (inception)



through
2001 2002 2002 2002 2003 June 30, 2003






(Unaudited)
(Unaudited)
Revenues from Licenses
          43,166       43,166       18,166       35,650       78,816  
     
     
     
     
     
     
 
Costs and expenses
                                               
Research and development
    (609,037 )     (1,251,614 )     (1,937,153 )     (573,355 )     (1,125,016 )     (3,062,169 )
General and administrative
    (490,081 )     (745,155 )     (1,359,085 )     (313,501 )     (780,484 )     (2,139,569 )
     
     
     
     
     
     
 
 
Total costs and expenses
    (1,099,118 )     (1,996,769 )     (3,296,238 )     (886,856 )     (1,905,500 )     (5,201,738 )
     
     
     
     
     
     
 
 
Loss from operations
    (1,099,118 )     (1,953,603 )     (3,253,072 )     (868,690 )     (1,869,850 )     (5,122,922 )
Interest income
    15,039       22,869       41,946       5,234       17,509       59,455  
Interest expense
    (59,748 )     (210,899 )     (270,647 )     (56,104 )     (456,470 )     (727,117 )
     
     
     
     
     
     
 
Net loss
    (1,143,827 )     (2,141,633 )     (3,481,773 )     (919,560 )     (2,308,811 )     (5,790,584 )
     
     
     
     
     
     
 

The accompanying notes are an integral part of these financial statements.

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Table of Contents

RIBOPHARMA AG

(A Development Stage Enterprise)
 
Statement of Changes in Stockholders’ Deficit
                                         
Deficit
Common Stock Accumulated

Additional During the
Number of Paid-in Development
Shares Amount Capital Stage Total





Balance at inception (June 16, 2000)
    50,000       50,000                   50,000  
Stock issuance
    5,560       5,560                   5,560  
Net loss
                      (196,313 )     (196,313 )
     
     
     
     
     
 
Balance December 31, 2000
    55,560       55,560             (196,313 )     (140,753 )
Net loss
                      (1,143,827 )     (1,143,827 )
     
     
     
     
     
 
Balance December 31, 2001
    55,560       55,560             (1,340,140 )     (1,284,580 )
Stock issuance
    13,000       13,000       1,208,440             1,221,440  
Net loss
                      (2,141,633 )     (2,141,633 )
     
     
     
     
     
 
Balance December 31, 2002
    68,560       68,560       1,208,440       (3,481,773 )     (2,204,773 )
Net loss (unaudited)
                      (2,308,811 )     (2,308,811 )
     
     
     
     
     
 
Balance June 30, 2003 (unaudited)
    68,560       68,560       1,208,440       (5,790,584 )     (4,513,584 )
     
     
     
     
     
 

The accompanying notes are an integral part of these financial statements.

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RIBOPHARMA AG

(A Development Stage Enterprise)
 
Statements of Cash Flows
                                                   
Period from
June 16, 2000 Period from
For the Year Ended (Inception) For the Six Months June 16, 2000
December 31, through Ended June 30, (Inception)

December 31,
through
2001 2002 2002 2002 2003 June 30, 2003






(Unaudited)
(Unaudited)
Cash flows from operating activities
                                               
Net loss
    (1,143,827 )     (2,141,633 )     (3,481,773 )     (919,560 )     (2,308,811 )     (5,790,584 )
Adjustments to reconcile net loss to net cash flows used in operating activities
                                               
 
Depreciation and amortization
    68,043       127,397       209,680       56,325       90,823       300,503  
Changes in assets and liabilities
                                               
 
Prepaid expenses and other current assets
    (1,820 )     (28,395 )     (46,606 )     542,477       (9,930 )     (56,536 )
 
Accounts payable and accrued liabilities
    60,231       170,337       311,078       4,048       484,992       796,070  
 
Other liabilities
    7,689       (2,769 )     38,207       4,525       66,812       105,019  
 
Deferred equipment grant
    70,764       13,983       251,870       55,481       (37,447 )     214,423  
     
     
     
     
     
     
 
Net cash used in operating activities
    (938,920 )     (1,861,080 )     (2,717,544 )     (256,704 )     (1,713,561 )     4,431,105  
     
     
     
     
     
     
 
Cash flows from investing activities
                                               
 
Purchases of property and equipment
    (136,530 )     (390,472 )     (783,439 )     (245,784 )     (219,225 )     (1,002,664 )
     
     
     
     
     
     
 
Net cash used in investing activities
    (136,530 )     (390,472 )     (783,439 )     (245,784 )     (219,225 )     (1,002,664 )
     
     
     
     
     
     
 
Cash flows from financing activities
                                               
 
Proceeds from issuance of common stock
          13,000       68,560                   68,560  
 
Proceeds from notes payable
    849,469       2,144,555       3,458,024       1,012,163             3,458,024  
 
Proceeds from note payable from stockholders
          2,000,000       2,000,000             1,000,000       3,000,000  
     
     
     
     
     
     
 
Net cash provided by financing activities
    849,469       4,157,555       5,526,584       1,012,163       1,000,000       6,526,584  
     
     
     
     
     
     
 
Net (decrease) increase in cash and cash equivalents
    (225,981 )     1,906,003       2,025,601       509,675       (932,786 )     1,092,815  
Cash and cash equivalents, beginning
    345,579       119,598             119,598       2,025,601       2,025,601  
     
     
     
     
     
     
 
Cash and cash equivalents, ending
    119,598       2,025,601       2,025,601       629,273       1,092,815       3,118,416  
     
     
     
     
     
     
 
Supplemental disclosure of noncash cash flows:
                                               
 
Interest paid
    23,863       115,244       139,107       22,293       78,564       217,671  
     
     
     
     
     
     
 
Supplemental disclosure of noncash financing activities:
                                               
 
Conversion of note payable into shares of common stock
          1,208,440       1,208,440                   1,208,440  
     
     
     
     
     
     
 

The accompanying notes are an integral part of these financial statements.

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RIBOPHARMA AG

(A Development Stage Enterprise)

Notes to the Financial Statements

1.     Nature of the Business

      Ribopharma AG (the “Company”) was incorporated on June 16, 2000 and is registered in the Commercial Register at the Amtsgericht (Local Court) in Bayreuth.

      The Company pursues innovative, application-related research and development in the field of Life Science, Agro-biotechnology, Medical Biotechnology and Molecular Medicine. Since its inception, the Company has devoted substantially all of its efforts to business planning, research and development, recruiting management and technical staff, and raising capital. Accordingly, the Company is considered a development stage enterprise as defined in the Statement of Financial Accounting Standards (“SFAS”) No. 7 and the accompanying financial statements represent those of a development stage enterprise.

      The accompanying financial statements have been prepared on a basis which assumes that the Company will continue as a going concern and which contemplates the realization of assets and satisfaction of liabilities and commitments in the normal course of business. The Company has a limited operating history and has incurred losses from operations since its inception.

      On July 31, 2003, Alnylam Holding Co., now Alnylam Pharmaceuticals, Inc., and subsequently referred to herein as “Alnylam”, signed a Share Exchange Agreement with Ribopharma AG. Under the terms of the agreement, shareholders of Ribopharma AG exchanged substantially all their outstanding shares for 1,549,216 shares of Alnylam common stock and approximately  1,322,000 in cash.

      The future viability of the Company is largely dependent on the ability of Alnylam to raise additional capital to finance its operations. Although management continues to pursue additional financing plans, there is no assurance that the Company will be successful in obtaining financing on terms acceptable to the Company.

      The Company is subject to risks common to companies in the drug development and pharmaceutical industry, including but not limited to, the successful development and commercialization of drug candidates, fluctuations in operating results and financial risks, potential need for additional financing, protection of proprietary technology and patent risks, compliance with government regulations, dependence on key personnel and collaborative partners, competition, customer demand, management of growth, and the effectiveness of marketing by the Company.

2.     Summary of Significant Accounting Policies

Use of Estimates

      The preparation of financial statements in conformity with accounting principles generally accepted in the United States of America requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and the disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. Actual results could differ from those estimates.

Unaudited Interim Financial Information

      The accompanying balance sheet as of June 30, 2003, and the statements of operations and cash flows for the six months ended June 30, 2002 and 2003 and the period from June 16, 2000 (inception) through June 30, 2003, and the statement of changes in stockholders’ deficit for the six months ended June 30, 2003 are unaudited, but in the opinion of management, include all adjustments, consisting only of normal recurring adjustments, necessary for a fair presentation of results for these interim periods. Certain information and footnote disclosures normally included in financial statements prepared in accordance with generally accepted accounting principles in the United States of America have been omitted, although the Company believes that the disclosures included are adequate to make the information presented not misleading. The results of

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RIBOPHARMA AG
(A Development Stage Enterprise)

Notes to the Financial Statements — (Continued)

operations for the six months ended June 30, 2003 are not necessarily indicative of the results expected for the entire year. The data disclosed in the notes to these financial statements for these periods is unaudited.

Concentration of Credit Risk

      Financial instruments which potentially expose the Company to concentration of credit risk consist primarily of cash and cash equivalents. The Company places its cash in highly rated financial institutions.

Cash and Cash Equivalents

      The Company considers all highly liquid investments with an original or remaining maturity of three months or less at the date of purchase to be cash equivalents. Cash equivalents consist primarily of money market instruments at December 31, 2001 and 2002 and June 30, 2003 (unaudited).

Fair Value of Financial Instruments

      The carrying amounts of the Company’s financial instruments, which include cash equivalents, accounts payable and accrued expenses, approximate their fair values at December 31, 2001 and 2002 and June 30, 2003 (unaudited).

Revenue Recognition

      The Company recognizes revenue in accordance with the Securities and Exchange Commission’s Staff Accounting Bulletin No. 104, Revenue Recognition in Financial Statements (“SAB 104”). Revenue is recognized when the following criteria have been met:

      1.     Persuasive evidence of an arrangement exists;

      2.     Delivery has occurred and risk of loss has passed;

      3.     The seller’s price to the buyer is fixed or determinable; and

      4.     Collectibility is reasonably assured.

      The Company’s revenue to date has been generated primarily through the licensing of the Company’s patents to certain collaborators. The Company recognized revenue related to nonrefundable license fees over the related performance period or at the time the Company has no remaining obligations.

Property and Equipment and Long-Lived Assets

      Property and equipment is recorded at cost and depreciated using the straight-line method over the estimated useful life of each asset. Expenditures for repairs and maintenance are charged to expense as incurred. On disposal, the related assets and accumulated depreciation are eliminated from the accounts and any resulting gain or loss is included in income. Leasehold improvements are amortized over the shorter of the useful life of the improvement or the remaining term of the lease.

      The Company evaluates the recoverability of its property and equipment and other long-lived assets when circumstances indicate that an event of impairment may have occurred. Impairment is measured based on the difference between the carrying value of the related assets or businesses and the discounted future cash flows of such assets or businesses. No impairment was required to be recognized for any of the years ended December 31, 2002 and 2003, or six months ended June 30, 2003 (unaudited).

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Table of Contents

RIBOPHARMA AG
(A Development Stage Enterprise)

Notes to the Financial Statements — (Continued)

Income Taxes

      The Company uses the liability method of accounting for income taxes. Under the liability method, deferred tax assets and liabilities reflect the impact of temporary differences between amounts of assets and liabilities for financial reporting purposes and such amounts as measured under enacted tax laws. A valuation allowance is required to offset any net deferred tax assets if, based upon the available evidence, it is more likely than not that some or all of the deferred tax asset will not be realized.

Research and Development Costs

      Research and development costs are expensed as incurred. Included in research and development costs are wages, benefits and other operating costs such as facilities, supplies and overhead directly related to the Company’s research and development department as well as costs to acquire technology licenses.

Comprehensive Loss

      Comprehensive income is defined as the change in equity of a business enterprise during a period from transactions and other events and circumstances from nonowner sources. During the years ended December 31, 2001 and 2002 and the six months ended June 30, 2002 and 2003 (unaudited), reported net loss was equal to comprehensive loss.

 
3. Property and Equipment
                                   
Estimated December 31,
Useful Life
June 30,
Years 2001 2002 2003




(Unaudited)
Laboratory equipment
    5 to 8       351,092       709,045       910,589  
Other equipment
    4       41,875       74,394       92,075  
             
     
     
 
              392,967       783,439       1,002,664  
Less: accumulated depreciation
                               
 
Laboratory equipment
            (70,131 )     (181,592 )     (262,130 )
 
Other equipment
            (12,152 )     (28,088 )     (38,373 )
             
     
     
 
              310,684       573,759       702,161  
             
     
     
 

      Depreciation expense was  68,043,  127,397,  209,680,  56,325, and  90,823 for the year ended December 31, 2001 and 2002, for the period from June 16, 2000 (inception) to December 31, 2002 and for the six months ended June 30, 2002 and 2003 (unaudited).

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RIBOPHARMA AG
(A Development Stage Enterprise)

Notes to the Financial Statements — (Continued)

 
4. Accrued Liabilities and Other Current Liabilities

      Accrued expenses and other current liabilities comprise the following:

                         
December 31,

June 30,
2001 2002 2003



(Unaudited)
Vacation
    21,986       35,500       45,500  
Legal support and consultancy
    24,644       46,000       179,171  
Supervisory board services
    14,316       5,000        
Other
    18,049       15,600       2,562  
     
     
     
 
Total accrued expenses
    78,995       102,100       227,233  
     
     
     
 
Employment tax
    19,829       14,280       23,316  
Social security
    19,115       17,974       28,296  
Other
    2,032       5,953       17,757  
     
     
     
 
Total other current liabilities
    40,976       38,207       69,369  
     
     
     
 
 
5. Deferred Equipment Grant

      In May 2000, the Company received a grant totaling 515,791 from the High-Tech-Offensive Zukunft Bayern-HTO Program (“HTO”) for the purchase of equipment to be used in the Company’s operations and to fund three Company scientists. The grant was remitted in three installments of 299,926 in 2000, 155,893 in 2001, and 59,972 in 2002. The Company recorded amounts received as deferred grant income and is recognizing the deferred amounts as an offset to the related depreciation expense of the fixed assets over the useful life of the related assets and as an offset to the salary expense of the scientists performing work under the grants. As a condition to the grant related to the purchase of equipment, for a period of 5 years after the grant date, if the Company sells the equipment purchased with the proceeds from the grant and realizes proceeds in excess of 400,000, the Company is obligated to refund the gain to the HTO.

      During the year ended December 31, 2000, 2001, 2002, and the six months ended June 30, 2002 (unaudited) and 2003 (unaudited), the Company recorded 22,055, 195,877, 45,989, 4,492, and 37,447, respectively, against the related fixed asset depreciation expense and salary costs. For the period from June 16, 2000 (inception) through December 31, 2003 and for the period from June 16, 2000 (inception) through June 30, 2003 (unaudited), the Company recorded 263,921 and 301,368 as an offset against the related costs. The Company has classified the deferred grant amounts of 177,877 and 140,440 as long-term as of December 31, 2002 and June 30, 2003 (unaudited), as these amounts will be recognized beyond one year.

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RIBOPHARMA AG
(A Development Stage Enterprise)

Notes to the Financial Statements — (Continued)

 
6. Notes Payable

      As of December 31, 2001, 2002 and June 30, 2003, the Company had approximately the following notes payable outstanding:

                           
December 31,

June 30,
2001 2002 2003



(Unaudited)
Note Payable from Stockholder
          2,000,000       3,000,000  
Note Payable to GUB
    464,000              
Note Payable to TGB
    466,000       1,227,000       1,227,000  
Note Payable to TBFB
    383,000       1,023,000       1,023,000  
     
     
     
 
 
Total
    1,313,000       4,250,000       5,250,000  
     
     
     
 

Note Payable from Stockholder

      On October 11, 2002, the Company entered into an agreement with Abingworth Bioventures for a note payable of  2,000,000. The note was due for repayment 12 months after the date of the agreement in full, including all outstanding accrued interest. The loan accrued interest at the rate of 8 percent per annum. In April 2003, the loan amount available to the Company was increased to  4,000,000, and the Company drew down an additional  1,000,000 during the six months ended June 2003. As a result of this additional borrowing, the Company committed to issuing 5,000 shares of common stock to Abingworth Bioventures. The fair value of these shares is being amortized over the life of the debt as additional interest expense. Following the share exchange agreement with Alnylam, the loan and accrued interest of  4,225,844 was assigned to Alnylam, and subsequently paid in full. Additionally in July 2003, the 5,000 shares of Ribopharma owed to Abingworth Bioventures were converted into 94,044 shares of Alnylam common stock.

Note Payable to GUB

      On September 6, 2000, the Company entered into a note payable with GUB Glasauer Unternehmensbeteiligung-KG (“GUB”) totalling approximately  1,208,000. The Company received approximately  464,000 in 2000, approximately  550,000 in January 2002 and approximately  194,000 in October 2002 for a total note payable of approximately  1,208,000 as of December 31, 2002. There was no interest due on the note payable, however, GUB was entitled to profit sharing. Furthermore, either GUB or the Company shareholders could require the note payable to be converted into ordinary shares of the Company. If certain milestones had been reached, 10,230 shares would be due, if they had not then 20,200. In October 2002, the agreement was amended, and the profit sharing agreement was ended, and GUB contributed an additional  13,000 and received 13,000 shares. As the estimated value of the common shares that were issued approximated the total amount provided to the Company under the note payable, the Company converted the note payable of approximately  1,208,000 into additional paid in capital upon issuance of the 13,000 shares of common stock.

Note Payable to TBG

      Effective November 23, 2000 and December 18, 2000, the Company entered into a note payable with an aggregate amount available to the Company of approximately  1,277,000 with Technologie-Beteiligungs-Gesellschaft mbH der Deutschen Ausgleichsbank, Bonn (“TBG”), of which approximately  466,000 was

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RIBOPHARMA AG
(A Development Stage Enterprise)

Notes to the Financial Statements — (Continued)

provided to the Company in 2001 and approximately  761,000 was provided in 2002. As of December 31, 2003, there was  50,000 available to the Company under the agreement.

      Borrowings under the note payable bear interest at the rate of 7 percent per annum and are due in December 2010. In addition, TBG is entitled to participate in a profit share of 15 percent of any profits of the Company. These profit share amounts will be paid out in the event that certain profit levels are met. The note payable to TBG also receives a final interest payment of 30 percent of the principal amount paid out together with an additional interest payment of 6 percent of the principal amount paid out for every year after the fifth year of the signing of the agreement. The final interest payment is being accrued over the term of the note as additional interest expense. These payments are due either on maturity or on early repayment. Any profit share received is deducted from the final payment. As of December 31, 2002,  1,227,000 was outstanding under this note payable to TBG. As of December 31, 2001, 2002 and June 30, 2003 (unaudited), there was  7,854,  38,298, and  184,050 of accrued interest recorded related to the final payment on the note payable. In August 2003, the outstanding amount of  1,227,000 and the final amounts due of accrued interest of  184,050 was repaid to TBG.

Note Payable to TBFB

      Effective January 17 and January 22, 2001, the Company entered into a note payable with an aggregate amount available to the Company of approximately  1,023,000 with the Technologie Beteiligungsfonds Bayern GmbH & Co. KG (“TBFB”) of which approximately  383,000 was provided to the Company in 2001 and approximately  640,000 was provided in 2002.

      Borrowings under the note payable bear interest at the rate of 8 percent per annum and are due in December 2008. In addition, TBFB is entitled to participate in a profit share of 15 percent of any profits of the Company. These profit share amounts will be paid out in the event that certain profit levels are met. The note payable to TBFB also receives a final interest payment of 35 percent of the principal amount paid out together with an additional interest payment of 9 percent of the principal amount paid out for every year after the fifth year of the signing of the agreement. The final interest payment is being accrued over the term of the note as additional interest expense. These payments are due either on maturity or on early repayment. Any profit share received is deducted from the final payment. As of December 31, 2002, approximately  1.023.000 was outstanding under this note payable to TBFB. As of December 31, 2001, 2002 and June 30, 2003 (unaudited), there was 11,671, 42,841, and 178,952 of accrued interest recorded related to the final payment on the note payable. In August 2003, the outstanding amount of  1,023,000 and the final amounts due of accrued interest of 178,952 was repaid to TBFB.

7.     Common Stock

      As of December 31, 2002, the Company has 68,560 shares of common stock authorized and 68,560 shares issued and outstanding. During the year ended December 31, 2002, the Company converted the note payable from GUB into 13,000 shares of common stock (Note 6).

8.     Income Taxes

      As a result of net operating losses there has been no income taxes payable during the year ended December 31, 2001 and 2002.

      Deferred income taxes reflect the tax effects of temporary differences between the carrying amounts of assets and liabilities for financial reporting and income tax purposes. A valuation allowance is established

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RIBOPHARMA AG
(A Development Stage Enterprise)

Notes to the Financial Statements — (Continued)

when uncertainty exists as to whether all or a portion of the net deferred tax assets will be realized. Components of the net deferred tax asset as of December 31, 2001 and 2002, are approximately as follows:

                 
December 31,

2001 2002


Net operating loss carryforwards
    7,000       558,000  
Statutory to US GAAP differences
    108,000       154,000  
     
     
 
      115,000       712,000  
Deferred tax asset valuation allowance
    (115,000 )     (712,000 )
     
     
 
Net deferred tax assets
           
     
     
 

      As required by SFAS No. 109, Accounting for Income Taxes , management of the Company has evaluated the positive and negative evidence bearing upon the realizability of its deferred tax assets. Management has concluded, in accordance with the applicable accounting standards, that it is more likely than not that the Company may not realize the benefit of its deferred tax assets. Accordingly, the deferred tax assets have been fully reserved. Management reevaluates the positive and negative evidence on an annual basis.

      At December 31, 2001 and 2002, the Company had net operating loss carryforwards for corporate income tax purposes of approximately  27,000 and  1,849,000, respectively, and for trade income tax purposes of approximately none and  385,000, respectively.

      Under German tax law, tax losses can be carried forward indefinitely. However, ownership changes of greater than 50% within 5 years of the loss periods may result in the disallowance of tax losses.

9.     Commitments and Contingencies

Operating Leases

      Total rent expense under operating leases for the years ended December 31, 2001, 2002, for the period from June 16, 2000 (inception) to December 31, 2002 and for the six months ended June 30, 2002 and 2003 (unaudited) was approximately  20,000 ,  80,000,  100,000,  40,000, and  92,000, respectively.

      Effective February 1, 2002, a rental agreement was entered into with Anterra Projektentwicklungs-GmbH & Co. Objekt Spinnerei Kulmbach KG for offices in Kulmbach, Germany. This rental agreement runs for a fixed period which expires on June 30, 2008. However, the Company may exercise its option to extend the agreement.

      The future minimum annual rental commitments under operating leases as of December 31, 2002 are as follows:

           
Year Ending December 31, Operating Leases


2003
    286,000  
2004
    365,000  
2005
    144,000  
2006
    137,000  
2007 and thereafter
    197,000  
     
 
 
Total
    1,129,000  
     
 

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RIBOPHARMA AG
(A Development Stage Enterprise)

Notes to the Financial Statements — (Continued)

10.     Significant Agreements

Licence and Cooperation Agreement with Merck KGaA, Darmstadt

      In March and April 2002, the Company entered into a licence and collaboration agreement with Merck KGaA, Darmstadt. The licence allows Merck KGaA to use the Company’s RNAi technology for pre-clinical validation of potential therapeutic molecular targets. The licence allows Merck KGaA to use the results of the target validating. Merck KGaA is to provide the Company with a number of gene sequences. As consideration for the agreement, Merck KGaA is to make a one-time payment of  10,000 and an annual licence fee of  35,000. If a patent is granted by either the European or U.S. patent office, the annual licence fee is increased to  70,000.

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PRO FORMA FINANCIAL DATA

      The following unaudited pro forma combined financial statements give effect to the acquisition of Ribopharma AG (“Ribopharma”) by Alnylam Pharmaceuticals, Inc. (“Alnylam”) that occurred on July 31, 2003 in a transaction which was accounted for as an asset purchase. The unaudited pro forma combined statements of operations combine the historical consolidated statements of operations of Alnylam for the year ended December 31, 2003 included elsewhere in this prospectus, and Ribopharma for the seven months ended July 31, 2003, giving effect to the merger as if it occurred on January 1, 2003, reflecting only pro forma adjustments expected to have a continuing impact on the combined results.

      These unaudited pro forma combined financial statements are for informational purposes only. They do not purport to indicate the results that would have actually been obtained had the merger been completed on the assumed date or for the periods presented, or which may be realized in the future. To produce the pro forma financial information, Alnylam allocated the purchase price using its best estimates of fair value, based in part on a valuation that was performed. The unaudited pro forma combined financial statements should be read in conjunction with Management’s Discussion and Analysis of Financial Condition and Results of Operations and the historical consolidated financial statements, including the related notes, of Alnylam and Ribopharma covering these periods, included elsewhere in this prospectus.

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ALNYLAM PHARMACEUTICALS

Unaudited Pro Forma Combined Statements of Operations

For the Year Ended December 31, 2003
                                           
Year Ended Seven Months
December 31, Ended July 31, Pro
2003 2003 Pro Forma Note Forma
Alnylam Ribopharma Adjustments Reference Combined





($ in thousands, except per share amounts)
Revenue from research collaborators and grants
  $ 176     $ 47                     $ 223  
     
     
                     
 
Costs and expenses
                                       
Research and development
    13,097       1,795       155       (A)          
                      197       (B)       15,244  
General and administrative
    7,527       1,027       17       (A)          
                      (484 )     (C)       8,087  
Purchased in-process research and development
    4,609             (4,609 )     (D)        
     
     
                     
 
 
Total operating costs and expenses
    25,233       2,822                       23,331  
     
     
                     
 
 
Loss from operations
    (25,057 )     (2,775 )                     (23,108 )
Interest income
    179       20       (11 )     (E)       188  
Interest expense
    (127 )     (498 )                     (625 )
Other expense
    (28 )                           (28 )
     
     
                     
 
Net loss
    (25,033 )     (3,253 )                     (23,573 )
Accretion of redeemable convertible preferred stock
    (2,906 )                           (2,906 )
     
     
                     
 
 
Net loss attributable to common stockholders
  $ (27,939 )   $ (3,253 )                   $ (26,479 )
     
     
                     
 
Net loss per share
                                       
Net loss per common share (basic and diluted)
  $ (29.64 )                           $ (18.70 )
     
                             
 
Weighted average shares used to compute basic and diluted net loss per common share
    942,665               473,588       (F)       1,416,253  

The accompanying notes are an integral part of these unaudited pro forma combined statements of operations.

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Notes to Unaudited Pro Forma Combined Financial Statements of Operations

($ in thousands, except per share amounts)

Note 1.     Basis of Presentation and Pro Forma Information

      The unaudited pro forma combined statements of operations data contained herein describes the pro forma effect of the acquisition of Ribopharma by Alnylam that took place on July 31, 2003, as if it occurred on January 1, 2003. The acquisition was completed as of July 31, 2003 and the results of operations of Ribopharma from August 1, 2003 through December 31, 2003 are included in Alnylam’s historical results of operations. Ribopharma’s historical results represent its results of operations for the seven months ended July 31, 2003, prior to its acquisition by Alnylam.

Note 2.     Description of the Business

      Alnylam commenced operations on June 14, 2002 as an early stage biopharmaceutical company seeking to develop and commercialize new drugs that work through a recently discovered system in cells known as RNA interference, or RNAi. Alnylam is focused on discovering, developing and commercializing RNAi therapeutics by establishing strategic alliances with leading pharmaceutical companies, establishing and maintaining a strong intellectual property position in the RNAi field and generating revenues through licensing agreements. Since its inception, the Company has devoted substantially all of its efforts to business planning, research and development, recruiting management and technical staff, and raising capital.

Note 3.     Description of Transaction

      On July 31, 2003, Alnylam acquired the outstanding shares of Ribopharma and accounted for the acquisition as an asset purchase. Under the terms of the agreement, shareholders of Ribopharma AG exchanged all their outstanding shares for $1,500 in cash and 815,376 shares of common stock of Alnylam. Ribopharma is a development stage enterprise that is performing research and development associated with a new pharmaceutical active agent category siRNA. The consideration consisted of $1,500 in cash and 815,376 shares of common stock. Based on a valuation performed of Ribopharma AG and the intangible assets acquired, the purchase price is estimated at $3,866 and is comprised of the following:

         
Cash paid
  $ 1,500  
Fair value of common stock issued
    1,947  
Acquisition costs
    419  
     
 
    $ 3,866  
     
 

      The purchase price has been allocated to the acquired tangible and intangible assets and liabilities based on their estimated fair values as of July 31, 2003 as follows:

         
Cash
  $ 1,798  
Other current assets
    41  
Fixed assets
    1,733  
Intangible assets
    8,684  
Accounts payable and accrued expenses assumed
    (1,300 )
Notes payable assumed
    (7,090 )
     
 
    $ 3,866  
     
 

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Notes to Unaudited Pro Forma Combined Financial Statements of Operations — (Continued)
($ in thousands, except per share amounts)

      The appraised value of intangible assets acquired was below the total fair value of intangible assets acquired and would generally result in the recognition of goodwill. However, since Ribopharma AG is a development stage company and not considered a “business” as defined by the applicable accounting rules, this residual value was allocated proportionately to the long-lived assets acquired as follows:

                 
Initial Recorded
Value Fair Value


Purchased in-process research and development
  $ 2,155     $ 4,609  
Core technology
    1,700       3,638  
Workforce
    200       437  
Fixed assets
    552       1,733  
     
     
 
    $ 4,607     $ 10,417  
     
     
 

      In connection with the Company’s acquisition of Ribopharma AG, the Company acquired two systemic RNAi programs related to the development of drugs targeting cancers such as malignant melanoma and pancreatic carcinoma. The Company expensed $4,609 of purchased in-process research and development associated with these programs. Management’s plans contemplate the Company would conduct the first phase of clinical trials and then out-license the programs to a partner. Upon out-licensing, we expect the partner to bear all development costs and control clinical development. We expect to earn payments upon the attainment of clinical milestones by our partner and royalties on product sales. Since our partner will control the clinical development, we will be unable to influence the timing of the achievement of the milestones, if at all, or the estimated year of the product launch, if at all. Our valuation assumed a development period of approximately 10 years, with milestones being earned during that period, which management believes is a typical horizon to bring a therapeutic drug to market. Actual results will differ from these estimates due to the uncertainties surrounding drug development.

      Management assumes responsibility for determining the in-process research and development valuation. The fair value assigned to purchase in-process research and development was estimated by discounting, to present value, the probability-adjusted net cash flows expected to result once the technology has reached technological feasibility. A discount rate of 32 percent was applied to estimate the present value of the cash flows and is consistent with the overall risks of developing these projects. As of December 31, 2003, the technological feasibility of the projects had not been reached and management believes the assumptions included in the valuation analysis continue to be valid. In the allocation of the purchase price, the concept of alternative future use was considered. The projects under development have no current alternative future uses for the underlying technology in the event the projects are unsuccessful.

      Core technology and workforce are being amortized over their estimated useful lives of ten years and four years, respectively. The step up in the fixed assets is being amortized over four years, the remaining estimated useful life of these assets.

Note 4.     Pro Forma Adjustments

  (A) To record the amortization of the step-up of Ribopharma’s fixed assets book value to recorded fair value to reflect the full year of 2003. The step up in the fixed assets is being amortized over four years, the remaining estimated useful life of these assets.

  (B) To record the amortization of acquired identifiable intangible assets including core technology and workforce to reflect the full year of 2003. Core technology and workforce are being amortized over their estimated useful lives of ten years and four years, respectively.
 
  (C) To reverse Ribopharma’s acquisition related expenses. This was amount was eliminated as it reflects a non-recurring charge directly resulting from the acquisition.

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Notes to Unaudited Pro Forma Combined Financial Statements of Operations — (Continued)
($ in thousands, except per share amounts)

  (D) To eliminate the charge for purchased in-process research and development that was recorded in July 2003 in connection with the acquisition. This was amount was eliminated as it reflects a non-recurring charge directly resulting from the acquisition.

  (E) To reduce investment income for the period from January 1, 2003 through July 31, 2003 to reflect the payment of $1,900 of cash consideration and acquisition related expenses paid in the acquisition at a rate of return of 1.0% per annum.

  (F)  The unaudited pro forma basic and diluted net loss per share is based on the weighted average number of shares of Alnylam common stock outstanding to reflect the issuance of 815,376 shares of common stock issued in the acquisition as if the shares were issued on January 1, 2003. Included in the Alnylam basic and diluted weighted average number of shares outstanding for the year ended December 31, 2003, is 341,787 shares, which represents the 815,376 shares outstanding from the period July 31, 2003 through December 31, 2003. Accordingly, an additional 473,588 shares are included in the pro forma adjusted weighted average basic and diluted net loss per share to reflect the shares outstanding from January 1, 2003 through July 31, 2003. Options, redeemable convertible preferred stock and warrants outstanding have not been included in the computation of pro forma diluted net loss per share because their effect would be antidilutive.

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5,000,000 Shares

(ALNYLAM LOGO)

Common Stock


Prospectus

              , 2004


Banc of America Securities LLC

Citigroup
Piper Jaffray
ThinkEquity Partners

         Until               , 2004, all dealers that buy, sell or trade our common stock may be required to deliver a prospectus, regardless of whether they are participating in this offering. This is in addition to the dealers’ obligation to deliver a prospectus when acting as underwriters and with respect to their unsold allotments or subscriptions.


Table of Contents

PART II

INFORMATION NOT REQUIRED IN PROSPECTUS

Item 13.      Other Expenses of Issuance and Distribution.

      The following table indicates the expenses to be incurred in connection with the offering described in this Registration Statement, other than underwriting discounts and commissions, all of which will be paid by Alnylam. All amounts are estimates, other than the SEC registration fee, the NASD filing fee and the NASDAQ National Market listing fee.

           
SEC registration fee
  $ 10,928  
NASD Filing fee
    9,125  
NASDAQ National Market listing fee
    100,000  
Printing and engraving expenses
    250,000  
Legal fees and expenses
    900,000  
Accounting fees and expenses
    450,000  
Blue Sky fees and expenses
    20,000  
Transfer agent and registrar fees and expenses
    5,000  
Miscellaneous
    154,947  
     
 
 
Total
  $ 1,900,000  
     
 


To be filed by amendment.

Item 14.      Indemnification of Directors and Officers.

      Section 102 of the Delaware General Corporation Law allows a corporation to eliminate the personal liability of directors of a corporation to the corporation or its stockholders for monetary damages for a breach of fiduciary duty as a director, except where the director breached his duty of loyalty, failed to act in good faith, engaged in intentional misconduct or knowingly violated a law, authorized the payment of a dividend or approved a stock repurchase in violation of Delaware corporate law or obtained an improper personal benefit. Alnylam has included such a provision in its Certificate of Incorporation.

      Section 145 of the General Corporation Law of Delaware provides that a corporation has the power to indemnify a director, officer, employee or agent of the corporation and certain other persons serving at the request of the corporation in related capacities against amounts paid and expenses incurred in connection with an action or proceeding to which he is or is threatened to be made a party by reason of such position, if such person shall have acted in good faith and in a manner he reasonably believed to be in or not opposed to the best interests of the corporation, and, in any criminal proceeding, if such person had no reasonable cause to believe his conduct was unlawful; provided that, in the case of actions brought by or in the right of the corporation, no indemnification shall be made with respect to any matter as to which such person shall have been adjudged to be liable to the corporation unless and only to the extent that the adjudicating court determines that such indemnification is proper under the circumstances.

      Our Restated Certificate of Incorporation includes a provision that eliminates the personal liability of its directors for monetary damages for breach of fiduciary duty as a director, except for liability:

  •  for any breach of the director’s duty of loyalty to Alnylam or its stockholders;
 
  •  for acts or omissions not in good faith or that involve intentional misconduct or a knowing violation of law;
 
  •  under section 174 of the Delaware General Corporation Law regarding unlawful dividends and stock purchases; or
 
  •  for any transaction from which the director derived an improper personal benefit.

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      These provisions are permitted under Delaware law. Our Restated Certificate of Incorporation provides that:

  •  we must indemnify our directors and officers to the fullest extent permitted by Delaware law;
 
  •  we may indemnify our other employees and agents to the same extent that we indemnified our officers and directors, unless otherwise determined by our Board of Directors; and
 
  •  we must advance expenses, as incurred, to our directors and executive officers in connection with a legal proceeding to the fullest extent permitted by Delaware law.

      The indemnification provisions contained in our Restated Certificate of Incorporation and Amended and Restated Bylaws are not exclusive of any other rights to which a person may be entitled by law, agreement, vote of stockholders or disinterested directors or otherwise.

      In addition, we maintain insurance on behalf of our directors and executive officers insuring them against any liability asserted against them in their capacities as directors or officers or arising out of such status.

Item 15.      Recent Sales of Unregistered Securities.

      Set forth below is information regarding shares of common stock and preferred stock issued, and options and warrants granted, by the Registrant within the past three years. Also included is the consideration, if any, received by the Registrant for such shares, options and warrants and information relating to the section of the Securities Act, or rule of the Securities and Exchange Commission under which exemption from registration was claimed.

    (1)  In July 2003, in connection with its acquisition of Alnylam Europe, AG, the Registrant issued an aggregate of 815,376 shares of its common stock to the former stockholders of Ribopharma AG in exchange for the outstanding shares of common stock of Alnylam Europe, AG and issued 49,496 shares of its common stock to former holders of Alnylam Europe, AG debt upon settlement of Alnylam Europe, AG accrued interest.
 
    (2)  In July 2003, the Registrant issued and sold an aggregate of 3,000,010 shares of its Series A Preferred Stock to a group of eight investors at a price per share of $1.00. Upon the closing of this offering, these shares will convert into 1,578,949 shares of common stock. These investors consisted of Polaris Venture Partners III, Polaris Entrepreneurs Fund III, Polaris Founders Fund III, Abingworth BioVentures III A, Abingworth BioVentures III B, Abingworth BioVentures III C, Abingworth BioVentures Executives III and CHP II, L.P.
 
    (3)  In July 2003, the Registrant issued and sold an aggregate of 16,561,845 shares of its Series B Preferred Stock to a group of 25 investors at a price per share of $2.50. Upon the closing of this offering, these shares will convert into 8,716,743 shares of common stock. These investors consisted of Polaris Venture Partners III, Polaris Entrepreneurs Fund III, Polaris Founders Fund III, Atlas Venture Fund V, Atlas Venture Parallel Fund V-A, Atlas Venture Parallel Fund V-B, Atlas Venture Entrepreneurs Fund V, Atlas Venture Fund VI, Atlas Venture Entrepreneur Fund VI, Atlas Venture Fund VI GmbH, Arch Venture Fund V, Arch Entrepreneurs Fund L.P., Arch V Entrepreneurs Fund, L.P., Abingworth BioVentures III A, Abingworth BioVentures III B, Abingworth BioVentures III C, Abingworth BioVentures Executives III, Cambridge Science Equities, CHP II, L.P., Phillip A. Sharp, Ph.D., Paul R. Schimmel, Ph.D. and John G. Conley.
 
    (4)  In July 2003, the Registrant issued an aggregate of 881,845 shares of Series B Preferred Stock to a group of three institutions in connection with a certain license agreement. Upon the closing of this offering, these shares will convert into 464,128 shares of common stock. These institutions consisted of the Massachusetts Institute of Technology, the Whitehead Institute for Biomedical Research and Max Planck-Gesellschaft zur Förderung der Wissenschaften e.V.
 
    (5)  In July 2003, the Registrant assumed the obligations of Alnylam U.S., Inc. under a warrant issued to Silicon Valley Bank to purchase 25,000 shares of Series B Preferred Stock at an exercise price

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  of $2.50 per share. Upon the closing of this offering, this warrant will become exercisable for 13,157 shares of common stock at an exercise price of $4.75.
 
    (6)  In September 2003, the Registrant issued and sold an aggregate of 1,000,000 shares of its Series C Preferred Stock to Merck & Co., Inc. at a price per share of $5.00. Upon the closing of this offering, these shares will convert into 526,315 shares of common stock.
 
    (7)  In October 2003, the Registrant issued and sold an aggregate of 504,825 shares of its Series C Preferred Stock to a group of 17 investors at a price per share of $5.00. Upon the closing of this offering, these shares will convert into 265,697 shares of common stock. These investors included Polaris Venture Partners III, Polaris Entrepreneurs Fund III, Polaris Founders Fund III, Atlas Venture Fund V, Atlas Venture Parallel Fund V-A, Atlas Venture Parallel Fund V-B, Atlas Venture Entrepreneurs Fund V, Atlas Venture Fund VI, Atlas Venture Entrepreneur Fund VI, Atlas Venture Fund VI GmbH, Arch Venture Fund V, Arch V Entrepreneurs Fund, Abingworth BioVentures III A, Abingworth BioVentures III B, Abingworth BioVentures III C and Abingworth BioVentures Executives III.
 
    (8)  On March 11, 2004, the Registrant issued and sold 1,666,667 shares of Series D Preferred Stock to Isis Pharmaceuticals, Inc. at a price per share of $6.00. Upon the closing of this offering, these shares will convert into 877,193 shares of common stock.
 
    (9)  On March 30, 2004, the Registrant issued and sold warrants to purchase an aggregate of 100,000 shares of Series C Preferred Stock at an exercise price of $5.00 per share to Lighthouse Capital Partners V, L.P. and Lighthouse Capital Partners IV, L.P. Upon the closing of this offering, these shares will convert into 52,630 shares of common stock at an exercise price of $9.50.

  (10)  Through April 30, 2004, the Registrant has granted stock options under its stock option plans for an aggregate of 1,987,167 shares of Common Stock (net of exercises, expirations and cancellations) at exercise prices of $.19 to $0.95 per share. Options to purchase 196,463 shares of Common Stock have been exercised for an aggregate purchase price of $133,987.

      No underwriters were involved in the foregoing sales of securities. The securities described in paragraph 1 of Item 15 were issued to a combination of foreign and U.S. investors in reliance upon exemptions from the registration provisions of the Securities Act set forth in Section 3(b) and Regulation S. The securities described in paragraphs 2 through 9 of Item 15 were issued to a combination of foreign and U.S. investors in reliance upon exemptions from the registration provisions of the Securities Act set forth in Section 4(2) or Regulation S thereof relative to sales by an issuer not involving any public offering, to the extent an exemption from such registration was required. All purchasers of shares of our convertible preferred stock described above represented to us in connection with their purchase that they were accredited investors and were acquiring the shares for investment and not distribution, that they could bear the risks of the investment and could hold the securities for an indefinite period of time. Such purchasers received written disclosures that the securities had not been registered under the Securities Act and that any resale must be made pursuant to a registration or an available exemption from such registration.

      The issuance of stock options and the common stock issuable upon the exercise of such options as described in paragraph 10 of Item 15 were issued pursuant to written compensatory plans or arrangements with our employees, directors and consultants, in reliance on the exemption provided by Rule 701 promulgated under the Securities Act.

      All of the foregoing securities are deemed restricted securities for purposes of the Securities Act. All certificates representing the issued shares of common stock described in this Item 15 included appropriate legends setting forth that the securities had not been registered and the applicable restrictions on transfer.

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Item 16.      Exhibits and Financial Statement Schedules.

      (a)  Exhibits

         
Exhibit
No. Description


  1.1     Form of Underwriting Agreement
  3.1     Certificate of Incorporation of the Registrant, as amended
  3.2*     Bylaws of the Registrant
  3.3*     Restated Certificate of Incorporation of the Registrant to be effective upon closing of the offering
  3.4*     Amended and Restated Bylaws of the Registrant to be effective upon closing of the offering
  4.1     Specimen certificate evidencing shares of common stock
  5.1     Opinion of Hale and Dorr LLP
  10.1     2002 Employee, Director and Consultant Stock Plan, as amended, together with forms of Incentive Stock Option Agreement, Non-qualified Stock Option Agreement and Restricted Stock Agreement
  10.2     2003 Employee, Director and Consultant Stock Plan, as amended, together with forms of Incentive Stock Option Agreement, Non-qualified Stock Option Agreement and Restricted Stock Agreement
  10.3     2004 Stock Incentive Plan, together with forms of Incentive Stock Option Agreement and Nonstatutory Stock Option Agreement
  10.4     2004 Employee Stock Purchase Plan
  10.5*     Registration Rights Agreement dated as of July 31, 2003 and amended as of October 9, 2003 and February 26, 2004 by and among the Registrant and the parties listed on Schedule A thereto
  10.6*     Investor Rights Agreement dated as of September 8, 2003 and amended on February 26, 2004 by and between the Registrant and Merck & Co., Inc.
  10.7*     Letter Agreement between the Registrant and John M. Maraganore, Ph.D. dated October 30, 2002
  10.8*     Letter Agreement between the Registrant and Vincent J. Miles, Ph.D. dated June 16, 2003
  10.9*     Letter Agreement between the Registrant and Thomas R. Ulich, M.D. dated June 15, 2003
  10.10*     Letter Agreement between the Registrant and Barry E. Greene dated September 29, 2003
  10.11*     Loan and Security Agreement by and between Lighthouse Capital Partners V, L.P. and the Registrant dated as of March 26, 2004, together with the Negative Pledge Agreement by and between Lighthouse Capital Partners V, L.P. and the Registrant dated as of March 26, 2004.
  10.12*     Warrants to Purchase Preferred Stock effective as of March 30, 2004 issued to Lighthouse Capital Partners V, L.P. and Lighthouse Capital Partners IV, L.P.
  10.13*     Warrant to Purchase Stock dated December 18, 2002 issued to Silicon Valley Bank
  10.14*     Lease, dated as of August 5, 2003, between the Registrant and ARE-770/784/790 Memorial Drive, LLC, as amended
  10.15*     Lease, dated as of September 26, 2003 by and between the Registrant and Three Hundred Third Street LLC
  10.16†*     License Agreement between Cancer Research Technology Limited and Alnylam U.S., Inc. dated July 18, 2003
  10.17†*     License Agreement between the Carnegie Institution of Washington and Alnylam Europe, AG, effective March 1, 2002, as amended by letter agreements dated September 2, 2002 and October 28, 2003.
  10.18†*     License Agreement by and between the Cold Spring Harbor Laboratory and Alnylam U.S., Inc. dated December 30, 2003
  10.19†*     Co-exclusive License Agreement between Garching Innovation GmbH and Alnylam U.S., Inc. dated December 20, 2002, as amended by Amendment dated July 8, 2003, together with Indemnification Agreement by and between Garching Innovation GmbH and Alnylam Pharmaceuticals, Inc. effective as of April 1, 2004
  10.20†*     Co-exclusive License Agreement between Garching Innovation GmbH and Alnylam Europe, AG dated July 30, 2003

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Exhibit
No. Description


  10.21†*     Agreement between The Board of Trustees of the Leland Stanford Junior University and Alnylam U.S., Inc. effective as of September 17, 2003
  10.22†*     Research Collaboration and License Agreement by and among Merck & Co., Inc., Alnylam U.S., Inc. and Registrant dated September 8, 2003
  10.23†*     Sponsored Research Agreement among Mayo Foundation for Medical Education and Research, Mayo Clinic Jacksonville and Alnylam Pharmaceuticals, Inc. effective as of October 1, 2003
  10.24†*     Strategic Collaboration and License Agreement effective as of March 11, 2004 between Isis Pharmaceuticals, Inc. and the Registrant
  10.25*     Investor Rights Agreement entered into as of March 11, 2004 by and between the Registrant and Isis Pharmaceuticals, Inc.
  10.26*     Agreement between the Registrant and Perini Building Company, Inc. effective as of March 26, 2004
  21.1*     Subsidiaries of the Registrant
  23.1     Consent of PricewaterhouseCoopers LLP, Independent Auditors
  23.2     Consent of PricewaterhouseCoopers Gesellschaft mit beschränkter Haftung Wirtschaftsprüfungsgesellschaft, Independent Auditors
  23.3     Consent of Hale and Dorr LLP (included in Exhibit 5.1)
  24.1*     Power of Attorney

Previously filed.

Confidential treatment requested as to certain portions, which portions have been filed separately with the Securities and Exchange Commission.

     (b)  Financial Statement Schedules .

      None

 
Item 17. Undertakings.

      The undersigned registrant hereby undertakes to provide to the underwriters at the closing specified in the underwriting agreement certificates in such denominations and registered in such names as required by the underwriters to permit prompt delivery to each purchaser.

      Insofar as indemnification for liabilities arising under the Securities Act of 1933 may be permitted to directors, officers, and controlling persons of the registrant pursuant to the foregoing provisions, or otherwise, the registrant has been advised that in the opinion of the Securities and Exchange Commission such indemnification is against public policy as expressed in the Securities Act and is therefore unenforceable. In the event that a claim for indemnification by the registrant against such liabilities (other than the payment by the registrant of expenses incurred or paid by a director, officer, or controlling person of the registrant in the successful defense of any action, suit, or proceeding) is asserted by such director, officer, or controlling person in connection with the securities being registered, the registrant will, unless in the opinion of its counsel the matter has been settled by controlling precedent, submit to a court of appropriate jurisdiction the question whether such indemnification by it is against public policy as expressed in the Securities Act and will be governed by the final adjudication of such issue.

      The undersigned registrant hereby undertakes that:

        (1) For purposes of determining any liability under the Securities Act of 1933, the information omitted from the form of prospectus filed as part of this registration statement in reliance upon Rule 430A and contained in a form of prospectus filed by the registrant pursuant to Rule 424(b) (1) or (4) or 497(h) under the Securities Act shall be deemed to be part of this registration statement as of the time it was declared effective.

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        (2) For the purpose of determining any liability under the Securities Act of 1933, each post-effective amendment that contains a form of prospectus shall be deemed to be a new registration statement relating to the securities offered therein, and the offering of such securities at that time shall be deemed to be the initial bona fide offering thereof.

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SIGNATURES

      Pursuant to the requirements of the Securities Act of 1933, the registrant has duly caused this registration statement to be signed on its behalf by the undersigned, thereunto duly authorized, in the City of Cambridge, Commonwealth of Massachusetts on this 10th day of May, 2004.

  ALNYLAM PHARMACEUTICALS, INC.

  By:  /s/ JOHN M. MARAGANORE
 
  John M. Maraganore, Ph.D.
  President and Chief Executive Officer

        Pursuant to the requirements of the Securities Act of 1933, this registration statement has been signed by the following persons in the capacities and on the dates indicated.

             
Signature Title Date



 
/s/ JOHN M. MARAGANORE

JOHN M. MARAGANORE, PH.D.
  President, Chief Executive Officer and Director
(Principal Executive Officer)
  May 10, 2004
 
/s/ BARRY E. GREENE

BARRY E. GREENE
  Chief Operating Officer and Treasurer (Principal Financial and Accounting Officer)   May 10, 2004
 
*

PETER BARRETT, PH.D.
  Director   May 10, 2004
 
*

JOHN BERRIMAN
  Director   May 10, 2004
 
*

JOHN CLARKE
  Director   May 10, 2004
 
*

PAUL SCHIMMEL, PH.D.
  Director   May 10, 2004
 
*

PHILLIP A. SHARP, PH.D.
  Director   May 10, 2004
 
*

KEVIN STARR
  Director   May 10, 2004
 
*

CHRISTOPH H. WESTPHAL, M.D., PH.D.
  Director   May 10, 2004
 
*By:   /s/ JOHN M. MARAGANORE

JOHN M. MARAGANORE, PH.D.
Attorney-in-fact
       

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EXHIBIT INDEX

         
Exhibit
No. Description


  1.1     Form of Underwriting Agreement
  3.1     Certificate of Incorporation of the Registrant, as amended
  3.2*     Bylaws of the Registrant
  3.3*     Restated Certificate of Incorporation of the Registrant to be effective upon closing of the offering
  3.4*     Amended and Restated Bylaws of the Registrant to be effective upon closing of the offering
  4.1     Specimen certificate evidencing shares of common stock
  5.1     Opinion of Hale and Dorr LLP
  10.1     2002 Employee, Director and Consultant Stock Plan, as amended, together with forms of Incentive Stock Option Agreement, Non-qualified Stock Option Agreement and Restricted Stock Agreement
  10.2     2003 Employee, Director and Consultant Stock Plan, as amended, together with forms of Incentive Stock Option Agreement, Non-qualified Stock Option Agreement and Restricted Stock Agreement
  10.3     2004 Stock Incentive Plan, together with forms of Incentive Stock Option Agreement and Nonstatutory Stock Option Agreement
  10.4     2004 Employee Stock Purchase Plan
  10.5*     Registration Rights Agreement dated as of July 31, 2003 and amended as of October 9, 2003 and February 26, 2004 by and among the Registrant and the parties listed on Schedule A thereto
  10.6*     Investor Rights Agreement dated as of September 8, 2003 and amended on February 26, 2004 by and between the Registrant and Merck & Co., Inc.
  10.7*     Letter Agreement between the Registrant and John M. Maraganore, Ph.D. dated October 30, 2002
  10.8*     Letter Agreement between the Registrant and Vincent J. Miles, Ph.D. dated June 16, 2003
  10.9*     Letter Agreement between the Registrant and Thomas R. Ulich, M.D. dated June 15, 2003
  10.10*     Letter Agreement between the Registrant and Barry E. Greene dated September 29, 2003
  10.11*     Loan and Security Agreement by and between Lighthouse Capital Partners V, L.P. and the Registrant dated as of March 26, 2004, together with the Negative Pledge Agreement by and between Lighthouse Capital Partners V, L.P. and the Registrant dated as of March 26, 2004.
  10.12*     Warrants to Purchase Preferred Stock effective as of March 30, 2004 issued to Lighthouse Capital Partners V, L.P. and Lighthouse Capital Partners IV, L.P.
  10.13*     Warrant to Purchase Stock dated December 18, 2002 issued to Silicon Valley Bank
  10.14*     Lease, dated as of August 5, 2003, between the Registrant and ARE-770/784/790 Memorial Drive, LLC, as amended
  10.15*     Lease, dated as of September 26, 2003 by and between the Registrant and Three Hundred Third Street LLC
  10.16†*     License Agreement between Cancer Research Technology Limited and Alnylam U.S., Inc. dated July 18, 2003
  10.17†*     License Agreement between the Carnegie Institution of Washington and Alnylam Europe, AG, effective March 1, 2002, as amended by letter agreements dated September 2, 2002 and October 28, 2003.
  10.18†*     License Agreement by and between the Cold Spring Harbor Laboratory and Alnylam U.S., Inc. dated December 30, 2003
  10.19†*     Co-exclusive License Agreement between Garching Innovation GmbH and Alnylam U.S., Inc. dated December 20, 2002, as amended by Amendment dated July 8, 2003 together with Indemnification Agreement by and between Garching Innovation GmbH and Alnylam Pharmaceuticals, Inc. effective April 1, 2004


Table of Contents

         
Exhibit
No. Description


  10.20†*     Co-exclusive License Agreement between Garching Innovation GmbH and Alnylam Europe, AG dated July 30, 2003
  10.21†*     Agreement between The Board of Trustees of the Leland Stanford Junior University and Alnylam U.S., Inc. effective as of September 17, 2003
  10.22†*     Research Collaboration and License Agreement by and among Merck & Co., Inc., Alnylam U.S., Inc. and Registrant dated September 8, 2003
  10.23†*     Sponsored Research Agreement among Mayo Foundation for Medical Education and Research, Mayo Clinic Jacksonville and Alnylam Pharmaceuticals, Inc. effective as of October 1, 2003
  10.24†*     Strategic Collaboration and License Agreement effective as of March 11, 2004 between Isis Pharmaceuticals, Inc. and the Registrant
  10.25*     Investor Rights Agreement entered into as of March 11, 2004 by and between the Registrant and Isis Pharmaceuticals, Inc.
  10.26*     Agreement between the Registrant and Perini Building Company, Inc. effective as of March 26, 2004
  21.1*     Subsidiaries of the Registrant
  23.1     Consent of PricewaterhouseCoopers LLP, Independent Auditors
  23.2     Consent of PricewaterhouseCoopers Gesellschaft mit beschränkter Haftung Wirtschaftsprüfungsgesellschaft, Independent Auditors
  23.3     Consent of Hale and Dorr LLP (included in Exhibit 5.1)
  24.1*     Power of Attorney

Previously filed.

Confidential treatment requested as to certain portions, which portions have been filed separately with the Securities and Exchange Commission.

Exhibit 1.1

ALNYLAM PHARMACEUTICALS, INC.

[___] Shares

Common Stock

UNDERWRITING AGREEMENT

dated May [__], 2004

BANC OF AMERICA SECURITIES LLC

CITIGROUP

PIPER JAFFRAY

THINKEQUITY PARTNERS


UNDERWRITING AGREEMENT

May [ ], 2004

BANC OF AMERICA SECURITIES LLC
CITIGROUP GLOBAL MARKETS INC.
PIPER JAFFRAY & CO.
THINKEQUITY PARTNERS LLC
As Representatives of the several Underwriters
c/o BANC OF AMERICA SECURITIES LLC
9 West 57th Street, 47th floor
New York, NY 10019

Ladies and Gentlemen:

Introductory. Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company"), proposes to issue and sell to the several underwriters named in Schedule A (the "Underwriters") an aggregate of [___] shares (the "Firm Common Shares") of its Common Stock, par value $0.0001 per share (the "Common Stock"). In addition, the Company has granted to the Underwriters an option to purchase up to an additional [___] shares (the "Optional Common Shares") of Common Stock, as provided in Section 2. The Firm Common Shares and, if and to the extent such option is exercised, the Optional Common Shares are collectively called the "Common Shares". Banc of America Securities LLC ("BAS"), Citigroup Global Markets Inc., Piper Jaffray & Co., ThinkEquity Partners LLC have agreed to act as representatives of the several Underwriters (in such capacity, each a "Representative") in connection with the offering and sale of the Common Shares.

The Company and the Underwriters agree that up to [___] of the Firm Common Shares to be purchased by the Underwriters (the "Directed Shares") shall be reserved for sale by the Underwriters to certain eligible directors, officers and employees of the Company and persons having business relationships with the Company (collectively, the "Participants"), as part of the distribution of the Common Shares by the Underwriters (the "Directed Share Program") subject to the terms of this Agreement, the applicable rules, regulations and interpretations of the National Association of Securities Dealers, Inc. (the "NASD") and all other applicable laws, rule and regulations. BAS (the "Designated Underwriter") has been selected to process the sales to the Participants under the Directed Share Program. To the extent that such Directed Shares are not orally confirmed for purchase by the Participants by the end of the first business day after the date of this Agreement, such Directed Shares may be offered to the public as part of the public offering contemplated hereby.

The Company has prepared and filed with the Securities and Exchange Commission (the "Commission") a registration statement on Form S-1 (File No. 333-113162), which contains a


form of prospectus to be used in connection with the public offering and sale of the Common Shares. Such registration statement, as amended, including the financial statements, exhibits and schedules thereto, in the form in which it was declared effective by the Commission under the Securities Act of 1933 and the rules and regulations promulgated thereunder (collectively, the "Securities Act"), including any information deemed to be a part thereof at the time of effectiveness pursuant to Rule 430A or Rule 434 under the Securities Act, is called the "Registration Statement". Any registration statement filed by the Company pursuant to Rule 462(b) under the Securities Act is called the "Rule
462(b) Registration Statement", and from and after the date and time of filing of the Rule 462(b) Registration Statement the term "Registration Statement" shall include the Rule 462(b) Registration Statement. Such prospectus, in the form first used by the Underwriters to confirm sales of the Common Shares, is called the "Prospectus"; provided, however, if the Company has, with the consent of BAS, elected to rely upon Rule 434 under the Securities Act, the term "Prospectus" shall mean the Company's prospectus subject to completion (each, a "preliminary prospectus") dated May [__], 2004 (such preliminary prospectus is called the "Rule 434 preliminary prospectus"), together with the applicable term sheet (the "Term Sheet") prepared and filed by the Company with the Commission under Rules 434 and 424(b) under the Securities Act and all references in this Agreement to the date of the Prospectus shall mean the date of the Term Sheet. All references in this Agreement to the Registration Statement, the Rule 462(b) Registration Statement, a preliminary prospectus, the Prospectus or the Term Sheet, or any amendments or supplements to any of the foregoing, shall include any copy thereof filed with the Commission pursuant to its Electronic Data Gathering, Analysis and Retrieval System ("EDGAR").

The Company hereby confirms its agreements with the Underwriters as follows:

Section 1. Representations and Warranties. The Company hereby represents, warrants and covenants to each Underwriter as follows:

(a) Compliance with Registration Requirements. The Registration Statement and any Rule 462(b) Registration Statement have been declared effective by the Commission under the Securities Act. The Company has complied to the Commission's satisfaction with all requests of the Commission for additional or supplemental information. No stop order suspending the effectiveness of the Registration Statement or any Rule
462(b) Registration Statement is in effect and no proceedings for such purpose have been instituted or, to the knowledge of the Company, are pending or contemplated or threatened by the Commission.

Each preliminary prospectus and the Prospectus when filed complied in all material respects with the Securities Act and, if filed by electronic transmission pursuant to EDGAR (except as may be permitted by Regulation S-T under the Securities Act), was identical to the copy thereof delivered to the Underwriters for use in connection with the offer and sale of the Common Shares. Each of the Registration Statement, any Rule 462(b) Registration Statement and any post-effective amendment thereto, at the time it became effective and at all times during the Prospectus Delivery Period (as defined below), complied and will comply in all material respects with the Securities Act and did not and will not contain any untrue statement of a material fact or omit to state a material fact required to be stated therein or necessary to make the statements therein not

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misleading. The Prospectus, as amended or supplemented, as of its date and at all times during the Prospectus Delivery Period, did not and will not contain any untrue statement of a material fact or omit to state a material fact necessary in order to make the statements therein, in the light of the circumstances under which they were made, not misleading. The representations and warranties set forth in the two immediately preceding sentences do not apply to statements in or omissions from the Registration Statement, any Rule 462(b) Registration Statement, or any post-effective amendment thereto, or the Prospectus, or any amendments or supplements thereto, made in reliance upon and in conformity with information relating to any Underwriter furnished to the Company in writing by the Representative expressly for use therein. There are no contracts or other documents required to be described in the Prospectus or to be filed as exhibits to the Registration Statement which have not been described or filed as required.

(b) Offering Materials Furnished to Underwriters. The Company has delivered to BAS a complete manually signed copy of the Registration Statement and of each consent and certificate of experts filed as a part thereof, and conformed copies of the Registration Statement (without exhibits) and preliminary prospectuses and the Prospectus, as amended or supplemented, in such quantities and at such places as the Representative has reasonably requested for each of the Underwriters.

(c) Distribution of Offering Material By the Company. The Company has not distributed and will not distribute, prior to the later of the Second Closing Date (as defined below) and the completion of the Underwriters' distribution of the Common Shares, any offering material in connection with the offering and sale of the Common Shares other than a preliminary prospectus, the Prospectus or the Registration Statement.

(d) The Underwriting Agreement. This Agreement has been duly authorized, executed and delivered by the Company.

(e) Authorization of the Common Shares. The Common Shares to be purchased by the Underwriters from the Company have been duly authorized for issuance and sale pursuant to this Agreement and, when issued and delivered by the Company pursuant to this Agreement against payment of the consideration set forth herein, will be validly issued, fully paid and nonassessable.

(f) No Applicable Registration or Other Similar Rights. There are no persons with registration or other similar rights to have any equity or debt securities registered for sale under the Registration Statement or included in the offering contemplated by this Agreement, except for such rights as have been waived.

(g) No Material Adverse Change. Except as otherwise disclosed in the Prospectus, since the respective dates as of which information is given in the Prospectus: (i) there has been no material adverse change, or any development that could reasonably be expected to result in a material adverse change, in the condition, financial or otherwise, or in the earnings, business, operations or prospects of the Company and its subsidiaries, considered as one entity, whether or not arising from transactions in the ordinary course of business, (any such change is called a "Material Adverse Change");

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(ii) the Company and its subsidiaries, considered as one entity, have not (A) incurred any material liability or obligation, indirect, direct or contingent, not in the ordinary course of business or (B) entered into any material transaction or agreement not in the ordinary course of business; and (iii) there has been (A) no dividend or distribution of any kind declared, paid or made by the Company or, except for dividends paid to the Company or other subsidiaries, any of its subsidiaries on any class of capital stock or, (B) except for repurchases by the Company of Common Stock, no repurchase or redemption by the Company or any of its subsidiaries of any class of capital stock.

(h) Independent Accountants. PricewaterhouseCoopers LLP, who have expressed their opinion with respect to the financial statements (which term as used in this Agreement includes the related notes thereto) filed with the Commission as a part of the Registration Statement and included in the Prospectus, are independent public or certified public accountants as required by the Securities Act.

(i) Preparation of the Financial Statements. The financial statements filed with the Commission as a part of the Registration Statement and included in the Prospectus present fairly, in all material respects, the consolidated financial position of the Company and its subsidiaries as of and at the dates indicated and the results of their operations and cash flows for the periods specified. Such financial statements have been prepared in conformity with generally accepted accounting principles as applied in the United States applied on a consistent basis throughout the periods involved, except as may be expressly stated in the related notes thereto. No other financial statements or supporting schedules are required to be included in the Registration Statement. The financial data set forth in the Prospectus under the captions "Prospectus Summary -- Summary Condensed Consolidated Financial Data", in all material respects, "Selected Condensed Consolidated Financial Data" and "Capitalization" fairly present the information set forth therein on a basis consistent with that of the audited financial statements contained in the Registration Statement.

(j) Incorporation and Good Standing of the Company and its Subsidiaries. Each of the Company and its subsidiaries has been duly incorporated and is validly existing as a corporation in good standing under the laws of the jurisdiction of its incorporation and has corporate power and authority to own, lease and operate its properties and to conduct its business as described in the Prospectus and, in the case of the Company, to enter into and perform its obligations under this Agreement. Each of the Company and each subsidiary is duly qualified as a foreign corporation to transact business and is in good standing in each other jurisdiction in which such qualification is required, whether by reason of the ownership or leasing of property or the conduct of business, except for such jurisdictions where the failure to so qualify or to be in good standing would not, individually or in the aggregate, result in a Material Adverse Change. All of the issued and outstanding capital stock of each subsidiary has been duly authorized and validly issued, is fully paid and nonassessable and is owned by the Company, directly or through subsidiaries, free and clear of any security interest, mortgage, pledge, lien, encumbrance or claim. The Company does not own or control, directly or indirectly, any corporation, association or other entity other than the subsidiaries listed in Exhibit 21 to the Registration Statement.

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(k) Capitalization and Other Capital Stock Matters. The authorized, issued and outstanding capital stock of the Company as of March 31, 2004 is as set forth in the Prospectus under the caption "Capitalization" in the column titled "Actual". The Common Stock (including the Common Shares) conforms in all material respects to the description thereof contained in the Prospectus. All of the issued and outstanding shares of Common Stock have been duly authorized and validly issued, are fully paid and nonassessable and have been issued in compliance with federal and state securities laws. None of the outstanding shares of Common Stock were issued in violation of any preemptive rights, rights of first refusal or other similar rights to subscribe for or purchase securities of the Company. There are no authorized or outstanding options, warrants, preemptive rights, rights of first refusal or other rights to purchase, or equity or debt securities convertible into or exchangeable or exercisable for, any capital stock of the Company or any of its subsidiaries other than those described in the Prospectus or issued or granted after the date thereof. The description of the Company's stock option, stock bonus and other stock plans or arrangements, and the options or other rights granted thereunder, set forth in the Prospectus accurately and fairly presents the information required to be shown with respect to such plans, arrangements, options and rights.

(l) Quotation. The Common Shares have been approved for inclusion on the Nasdaq National Market, subject only to official notice of issuance.

(m) Non-Contravention of Existing Instruments; No Further Authorizations or Approvals Required. Neither the Company nor any of its subsidiaries is in violation of its charter or by-laws or is in default
(or, with the giving of notice or lapse of time, would be in default) ("Default") under any indenture, mortgage, loan or credit agreement, note, contract, franchise, lease or other instrument to which the Company or any of its subsidiaries is a party or by which it or any of them may be bound, or to which any of the property or assets of the Company or any of its subsidiaries is subject (each, an "Existing Instrument"), except for such Defaults as would not, individually or in the aggregate, result in a Material Adverse Change. The Company's execution, delivery and performance of this Agreement and consummation of the transactions contemplated hereby and by the Prospectus (i) have been duly authorized by all necessary corporate action and will not result in any violation of the provisions of the charter or by-laws of the Company or any subsidiary, (ii) will not conflict with or constitute a breach of, or Default under, or result in the creation or imposition of any lien, charge or encumbrance upon any property or assets of the Company or any of its subsidiaries pursuant to, or require the consent of any other party to, any Existing Instrument, except for such conflicts, breaches, Defaults, liens, charges or encumbrances as would not, individually or in the aggregate, result in a Material Adverse Change and (iii) will not result in any violation of any law, administrative regulation or administrative or court decree applicable to the Company or any subsidiary, except for such violations as would not, individually or in the aggregate, result in a Material Adverse Change. No consent, approval, authorization or other order of, or registration or filing with, any court or other governmental or regulatory authority or agency, is required for the Company's execution, delivery and performance of this Agreement and consummation of the transactions contemplated hereby and by the Prospectus, except (A) such as have been obtained or made by the Company and are in full force and effect under the Securities Act, applicable

5

state securities or blue sky laws and from the National Association of Securities Dealers, Inc. (the "NASD") and (B) such as have been obtained under the laws and regulations of jurisdictions outside the United States in which Directed Shares are offered.

(n) No Material Actions or Proceedings. Except as described in the Prospectus, there are no legal or governmental actions, suits or proceedings pending or, to the Company's knowledge, threatened (i) against or affecting the Company or any of its subsidiaries, (ii) which has as the subject thereof any officer or director of, or property owned or leased by, the Company or any of its subsidiaries or (iii) relating to environmental or discrimination matters, where in any such case (A) there is a reasonable possibility that such action, suit or proceeding might be determined adversely to the Company or such subsidiary and (B) any such action, suit or proceeding, if so determined adversely, would reasonably be expected to result in a Material Adverse Change or adversely affect the consummation of the transactions contemplated by this Agreement. No material labor dispute with the employees of the Company or any of its subsidiaries, or with the employees of any principal supplier of the Company, exists or, to the Company's knowledge, is threatened or imminent that could result in a Material Adverse Change.

(o) Intellectual Property Rights. Except as described in the Prospectus, the Company and its subsidiaries own or have rights to use the patents, patent applications, trade and service marks, trade and service mark registrations, trade names, copyrights, licenses, inventions, trade secrets, technology, know-how and other intellectual property (collectively, the "Intellectual Property") necessary for the conduct of the Company's business as now conducted. Except as described in the Prospectus, (a) there is no pending or, to the Company's knowledge, threatened action, suit, proceeding or claim by others challenging the Company's rights in or to any such Intellectual Property, and the Company is unaware of any material fact which would form a reasonable basis for any such claim; (b) there is no pending, or to the Company's knowledge, threatened action, suit, proceeding or claim by others that the Company infringes or otherwise violates any patent, trademark, copyright, trade secret or other proprietary rights of others, and the Company is unaware of any other material fact which would form a reasonable basis for any such claim; (c) there is no pending or, to the Company's knowledge, threatened action, suit, proceeding or claim by others challenging the validity or scope of any such Intellectual Property owned by the Company, and with respect to any such Intellectual Property that the Company has a right to use, the Company is unaware of any such claim, and, in either case, the Company is unaware of any material fact which would form a reasonable basis for any such claim; (d) there is no prior art of which the Company is aware that may render invalid any patent owned by the Company or that the Company has rights to use the inventions covered thereby which has not been disclosed to the applicable government patent office; (e) the Company's license agreements mentioned in the Prospectus are in full force and effect, and the Company is not in material breach or default thereof, and to the knowledge of the Company, other parties to those agreements are not in material breach or default thereof; and (f) the granted or issued patents, trademarks, and copyrights owned by the Company have been duly maintained and are in full force and in effect, and none of such patents, trademarks and copyrights have been adjudged invalid or unenforceable in whole or in part.

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(p) Patent Applications. All patent applications owned by the Company that describe inventions necessary to conduct the business of the Company in the manner described in the Prospectus (the "Company Patent Applications") have been duly and properly filed with the U. S. Patent and Trademark Office (the "PTO") or foreign and international patent authorities. To the knowledge of the Company, the Company has complied with the PTO's duty of candor and disclosure for the Company Patent Applications and has made no material misrepresentation during prosecution of the Company Patent Applications. To the Company's knowledge, the Company Patent Applications disclose patentable subject matters, and the Company has not been notified of any inventorship challenges nor has any interference been declared or provoked nor is any material fact known by the Company that would preclude the issuance of patents with respect to the Company Patent Applications or would render such patents invalid or unenforceable.

(q) Prospectus Descriptions. The statements contained in the Prospectus under the captions "Risk Factors -- Risks Relating to Patents and Licenses," "Business -- Our Business Strategy," "Business -- Our Development Programs," and "Business -- Patents and Proprietary Rights" insofar as such statements summarize legal matters, agreements, documents, or proceedings discussed therein, are accurate and fair summaries in all material respects of such legal matters, agreements, documents or proceedings.

(r) All Necessary Permits, Etc. The Company and each subsidiary possess such valid and current certificates, authorizations or permits issued by the appropriate state, federal or foreign regulatory agencies or bodies necessary to conduct their respective businesses (other than any the absence of which would not, singly or in the aggregate, result in a Material Adverse Change), and neither the Company nor any subsidiary has received any notice of proceedings relating to the revocation or modification of, or non-compliance with, any such certificate, authorization or permit which, singly or in the aggregate, if the subject of an unfavorable decision, ruling or finding, could result in a Material Adverse Change.

(s) Title to Properties. Except as disclosed in the Prospectus, the Company and each of its subsidiaries has good and marketable title to all real property and good title to all other properties and assets reflected as owned in the financial statements referred to in Section 1(i) above, in each case free and clear of any security interests, mortgages, liens, encumbrances, equities, claims and other defects, except such as do not materially and adversely affect the value of such property and do not materially interfere with the use made of such property by the Company or such subsidiary. The real property, improvements, equipment and personal property held under lease by the Company or any subsidiary are held under valid and enforceable leases, with such exceptions as are not material and do not materially interfere with the use made of such real property, improvements, equipment or personal property by the Company or such subsidiary or with such exceptions that would not result in a Material Adverse Change.

(t) Tax Law Compliance. The Company and its consolidated subsidiaries have filed all necessary federal, state and foreign income and franchise tax returns or

7

have properly requested extensions thereof (which extensions have not expired) and have paid all taxes required to be paid by any of them and, if due and payable, any related or similar assessment, fine or penalty levied against any of them, except as are being contested in good faith and that, if resolved unfavorably to the Company, would not result in a Material Adverse Change. The Company has made adequate charges, accruals and reserves in the applicable financial statements referred to in
Section 1 (i) above in respect of all federal, state and foreign income and franchise taxes for all periods as to which the tax liability of the Company or any of its subsidiaries has not been finally determined.

(u) Company Not an "Investment Company". The Company is not, and after receipt of payment for the Common Shares will not be, an "investment company" within the meaning of Investment Company Act and will conduct its business in a manner so that it will not become subject to the Investment Company Act of 1940, as amended (the "Investment Company Act").

(v) Insurance. Each of the Company and its subsidiaries are insured by recognized, financially sound and reputable institutions with policies in such amounts and with such deductibles and covering such risks as the Company has deemed adequate and customary for its businesses including, but not limited to, policies covering real and personal property owned or leased by the Company and its subsidiaries against theft, damage, destruction, acts of vandalism and earthquakes. The Company has no reason to believe that it or any subsidiary will not be able (i) to renew its existing insurance coverage as and when such policies expire or (ii) to obtain comparable coverage from similar institutions as may be necessary or appropriate to conduct its business as now conducted and at a cost that would not result in a Material Adverse Change.

(w) No Price Stabilization or Manipulation. The Company has not taken and will not take, directly or indirectly, any action designed to or that might be reasonably expected to cause or result in stabilization or manipulation of the price of any security of the Company to facilitate the sale or resale of the Common Shares. The Company acknowledges that the Underwriters may engage in passive market making transactions in the Common Stock on the Nasdaq National Market in accordance with Regulation M under the Securities Exchange Act of 1934, as amended (the "Exchange Act").

(x) Related Party Transactions. There are no business relationships or related-party transactions involving the Company or any subsidiary or any other person required to be described in the Prospectus which have not been described as required.

(y) Disclosure Controls and Procedures. The Company has established and maintains disclosure controls and procedures (as such term is defined in Rule 13a-15 under the Exchange Act), and such controls and procedures are designed (i) to ensure that information required to be disclosed by the Company in the reports that it files or submits under the Exchange Act is recorded, processed, summarized and reported, within the time periods specified in the Commission's rules and forms and (ii) to ensure that information required to be disclosed by the Company in the reports that it files or submits under the Exchange Act is accumulated and communicated to the Company's management,

8

including its principal executive officer and principal financial officer, as appropriate to allow timely decisions regarding required disclosure, and such controls and procedures are effective, in that they provide reasonable assurance that information required to be disclosed by the Company in the reports that the Company files or submits under the Exchange Act is recorded, processed, summarized and reported within the time periods specified in the Commission's rules and regulations, in all material respects.

(z) No Unlawful Contributions or Other Payments. Neither the Company nor any of its subsidiaries nor, to the Company's knowledge, any employee or agent of the Company or any subsidiary, has made any contribution or other payment to any official of, or candidate for, any federal, state or foreign office in violation of any law or of the character required to be disclosed in the Prospectus.

(aa) Company's Accounting System. The Company maintains a system of accounting controls sufficient to provide reasonable assurances that:
(i) transactions are executed in accordance with management's general or specific authorization; (ii) transactions are recorded as necessary to permit preparation of financial statements in conformity with generally accepted accounting principles as applied in the United States and to maintain accountability for assets; (iii) access to assets is permitted only in accordance with management's general or specific authorization; and (iv) the recorded accountability for assets is compared with existing assets at reasonable intervals and appropriate action is taken with respect to any differences.

(bb) Compliance with Environmental Laws. Except as would not, individually or in the aggregate, result in a Material Adverse Change:
(i) neither the Company nor any of its subsidiaries is in violation of any federal, state, local or foreign law or regulation relating to pollution or protection of human health or the environment (including, without limitation, ambient air, surface water, groundwater, land surface or subsurface strata) or wildlife, including without limitation, laws and regulations relating to emissions, discharges, releases or threatened releases of chemicals, pollutants, contaminants, wastes, toxic substances, hazardous substances, petroleum and petroleum products (collectively, "Materials of Environmental Concern"), or otherwise relating to the manufacture, processing, distribution, use, treatment, storage, disposal, transport or handling of Materials of Environment Concern (collectively, "Environmental Laws"), which violation includes, but is not limited to, noncompliance with any permits or other governmental authorizations required for the operation of the business of the Company or its subsidiaries under applicable Environmental Laws, or noncompliance with the terms and conditions thereof, nor has the Company or any of its subsidiaries received any written communication, whether from a governmental authority, citizens group, employee or otherwise, that alleges that the Company or any of its subsidiaries is in violation of any Environmental Law; (ii) there is no claim, action or cause of action filed with a court or governmental authority, no investigation with respect to which the Company has received written notice, and no written notice by any person or entity alleging potential liability for investigatory costs, cleanup costs, governmental responses costs, natural resources damages, property damages, personal injuries, attorneys' fees or penalties arising out of, based on or resulting from the presence, or release into the environment, of any Material of Environmental Concern at any location owned, leased or

9

operated by the Company or any of its subsidiaries, now or in the past (collectively, "Environmental Claims"), pending or, to the Company's knowledge, threatened against the Company or any of its subsidiaries or any person or entity whose liability for any Environmental Claim the Company or any of its subsidiaries has retained or assumed either contractually or by operation of law; and (iii) to the Company's knowledge, there are no past or present actions, activities, circumstances, conditions, events or incidents, including, without limitation, the release, emission, discharge, presence or disposal of any Material of Environmental Concern, that reasonably could result in a violation of any Environmental Law or form the basis of a potential Environmental Claim against the Company or any of its subsidiaries or against any person or entity whose liability for any Environmental Claim the Company or any of its subsidiaries has retained or assumed either contractually or by operation of law.

(cc) ERISA Compliance. The Company and its subsidiaries and any "employee benefit plan" (as defined under the Employee Retirement Income Security Act of 1974, as amended, and the regulations and published interpretations thereunder (collectively, "ERISA")) established or maintained by the Company, its subsidiaries or their "ERISA Affiliates" (as defined below) are in compliance in all material respects with ERISA. "ERISA Affiliate" means, with respect to the Company or a subsidiary, any member of any group of organizations described in Sections 414(b),(c),(m) or (o) of the Internal Revenue Code of 1986, as amended, and the regulations and published interpretations thereunder (the "Code") of which the Company or such subsidiary is a member. Except as would not be expected to result in a Material Adverse Change, no "reportable event" (as defined under ERISA) has occurred or is reasonably expected to occur with respect to any "employee benefit plan" established or maintained by the Company, its subsidiaries or any of their ERISA Affiliates. Except as would not be expected to result in a Material Adverse Change, no "employee benefit plan" established or maintained by the Company, its subsidiaries or any of their ERISA Affiliates, if such "employee benefit plan" were terminated, would have any "amount of unfunded benefit liabilities" (as defined under ERISA). Neither the Company, its subsidiaries nor any of their ERISA Affiliates has incurred or reasonably expects to incur any liability under (i) Title IV of ERISA with respect to termination of, or withdrawal from, any "employee benefit plan" or (ii) Sections 412, 4971, 4975 or 4980B of the Code, except, in each case, as would not be expected to result in a Material Adverse Change. Each "employee benefit plan" established or maintained by the Company, its subsidiaries or any of their ERISA Affiliates that is intended to be qualified under Section 401(a) of the Code is so qualified and nothing has occurred, whether by action or failure to act, which would cause the loss of such qualification, except where the loss of such qualification would not be expected to result in a Material Adverse Change.

(dd) Brokers. Except as provided or contemplated by this Agreement, there is no broker, finder or other party that is entitled to receive from the Company any brokerage or finder's fee or other fee or commission as a result of any transactions contemplated by this Agreement.

(ee) No Outstanding Loans or Other Indebtedness. There are no outstanding loans, advances (except normal advances for business expenses in the ordinary course of

10

business) or guarantees or indebtedness by the Company to or for the benefit of any of the officers or directors of the Company or any of the members of any of them, except as disclosed in the Prospectus.

(ff) Compliance with Laws. The Company has not been advised, and has no reason to believe, that it and each of its subsidiaries are not conducting business in compliance with all applicable laws, rules and regulations of the jurisdictions in which it is conducting business, except where failure to be so in compliance would not result in a Material Adverse Change.

(gg) FDA Compliance. The Company and its subsidiaries are in compliance in all material respects with all applicable rules and regulations of the U.S. Food and Drug Administration (the "FDA"), and all related applicable laws, statutes, ordinances, rules or regulations (including, without limitation, the Federal Food, Drug and Cosmetic Act, as amended, the Biologic Products provisions of the Public Health Act, as amended, and the Comprehensive Drug Abuse Prevention and Control Act of 1970, as amended), the enforcement of which, individually or in the aggregate, would be expected to result in a Material Adverse Change.

(hh) FDA and PTO Proceedings. To the Company's knowledge, except as disclosed in the Prospectus, there are no rulemaking or similar proceedings before the FDA or the U.S. Patent and Trademark Office or any similar entity in any other jurisdiction which affects or involves, or will affect or involve, the Company or any of its subsidiaries or any of the processes or products which the Prospectus discloses the Company or any of its subsidiaries has developed, is developing or proposes to develop or uses or proposes to use which, if the subject of an action unfavorable to the Company, would be expected to result in a Material Adverse Change.

(ii) Directed Share Program. (i) The Registration Statement, the Prospectus and any Preliminary Prospectus comply, and any further amendments or supplements thereto will comply, with any applicable laws or regulations of foreign jurisdictions in which the Prospectus or any Preliminary Prospectus, as amended or supplemented, if applicable, are distributed in connection with the Directed Share Program, and (ii) no authorization, approval, consent, license, order registration or qualification of or with any government, governmental instrumentality or court, other than such as have been obtained, is necessary under the securities laws and regulations of foreign jurisdictions in which the Directed Shares are offered outside the United States. The Company has not offered, or caused the Underwriters to offer, any Common Shares to any person pursuant to the Directed Share Program with the intent to unlawfully influence (i) a customer or supplier of the Company to alter the customer's or supplier's level or type of business with the Company or (ii) a trade journalist or publication to write or publish favorable information about the Company or its products.

Any certificate signed by an officer of the Company and delivered to the Representative or to counsel for the Underwriters shall be deemed to be a representation and warranty by the Company to each Underwriter as to the matters set forth therein.

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The Company acknowledges that the Underwriters and, for purposes of the opinions to be delivered pursuant to Section 5 hereof, counsel to the Company and counsel to the Underwriters, will rely upon the accuracy and truthfulness of the foregoing representations and hereby consents to such reliance.

Section 2. Purchase, Sale and Delivery of the Common Shares. a) The Firm Common Shares. On the basis of the representations, warranties and agreements herein contained, and upon the terms but subject to the conditions herein set forth, the Company agrees to issue and sell to the several Underwriters the Firm Common Shares upon the terms herein set forth and the Underwriters agree, severally and not jointly, to purchase from the Company the respective number of Firm Common Shares set forth opposite their names on Schedule A. The purchase price per Firm Common Share to be paid by the several Underwriters to the Company shall be $[___] per share.

(b)The First Closing Date. Delivery of certificates for the Firm Common Shares to be purchased by the Underwriters and payment therefor shall be made at the offices of Shearman & Sterling LLP, 599 Lexington Avenue, New York, New York at 9:00 a.m. East Coast time, on [___], 2004, or such other time and date not later than 1:30 a.m. East Coast time, on [____], 2004 as shall be agreed upon by the Company and the Representative (the time and date of such closing are called the "First Closing Date").

(c)The Optional Common Shares; the Second Closing Date. In addition, on the basis of the representations, warranties and agreements herein contained, and upon the terms but subject to the conditions herein set forth, the Company hereby grants an option to the several Underwriters to purchase, severally and not jointly, up to an aggregate of [___] Optional Common Shares from the Company at the purchase price per share to be paid by the Underwriters for the Firm Common Shares. The option granted hereunder is for use by the Underwriters solely in covering any over-allotments in connection with the sale and distribution of the Firm Common Shares. The option granted hereunder may be exercised at any time (but not more than once) upon notice by the Representative to the Company, which notice may be given at any time within 30 days from the date of this Agreement. Such notice shall set forth (i) the aggregate number of Optional Common Shares as to which the Underwriters are exercising the option,
(ii) the names and denominations in which the certificates for the Optional Common Shares are to be registered and (iii) the time, date and place at which such certificates will be delivered (which time and date may be simultaneous with, but not earlier than, the First Closing Date; and in such case the term "First Closing Date" shall refer to the time and date of delivery of certificates for the Firm Common Shares and the Optional Common Shares). Such time and date of delivery, if subsequent to the First Closing Date, is called the "Second Closing Date" and shall be determined by the Representative and shall not be earlier than three nor later than five full business days after delivery of such notice of exercise. If any Optional Common Shares are to be purchased, each Underwriter agrees, severally and not jointly, to purchase the number of Optional Common Shares (subject to such adjustments to eliminate fractional shares as the Representative may determine) that bears the same proportion to the total number of Optional Common Shares to be purchased as the number of Firm Common Shares set forth on Schedule A opposite the name of such Underwriter bears to the total number of Firm Common Shares. The Representative may cancel the option at any time prior to its expiration by giving written notice of such cancellation to the Company.

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(d)Public Offering of the Common Shares. The Representative hereby advises the Company that the Underwriters intend to offer for sale to the public, as described in the Prospectus, their respective portions of the Common Shares as soon after this Agreement has been executed and the Registration Statement has been declared effective as the Representative, in its sole judgment, has determined is advisable and practicable.

(e)Payment for the Common Shares. Payment for the Common Shares shall be made at the First Closing Date (and, if applicable, at the Second Closing Date) by wire transfer of immediately available funds to the order of the Company.

It is understood that the Representative has been authorized, for its own account and the accounts of the several Underwriters, to accept delivery of and receipt for, and make payment of the purchase price for, the Firm Common Shares and any Optional Common Shares the Underwriters have agreed to purchase. BAS, individually and not as the Representative of the Underwriters, may (but shall not be obligated to) make payment for any Common Shares to be purchased by any Underwriter whose funds shall not have been received by the Representative by the First Closing Date or the Second Closing Date, as the case may be, for the account of such Underwriter, but any such payment shall not relieve such Underwriter from any of its obligations under this Agreement.

(f)Delivery of the Common Shares. The Company shall deliver, or cause to be delivered, to the Representative for the accounts of the several Underwriters certificates for the Firm Common Shares at the First Closing Date, against the irrevocable release of a wire transfer of immediately available funds for the amount of the purchase price therefor. The Company shall also deliver, or cause to be delivered, to the Representative for the accounts of the several Underwriters, certificates for the Optional Common Shares the Underwriters have agreed to purchase at the First Closing Date or the Second Closing Date, as the case may be, against the irrevocable release of a wire transfer of immediately available funds for the amount of the purchase price therefor. The certificates for the Common Shares shall be in definitive form and registered in such names and denominations as the Representative shall have requested at least two full business days prior to the First Closing Date (or the Second Closing Date, as the case may be) and shall be made available for inspection on the business day preceding the First Closing Date (or the Second Closing Date, as the case may be) at a location in New York City as the Representative may designate. Time shall be of the essence, and delivery at the time and place specified in this Agreement is a further condition to the obligations of the Underwriters.

(g)Delivery of Prospectus to the Underwriters. Not later than 4:00 p.m. on the second business day following the date the Common Shares are first released by the Underwriters for sale to the public, the Company shall deliver or cause to be delivered, copies of the Prospectus in such quantities and at such places as the Representative shall request.

Section 3. Additional Covenants. The Company further covenants and agrees with each Underwriter as follows:

(a) Representative's Review of Proposed Amendments and Supplements. During such period beginning on the date hereof and ending on the later of the First Closing Date or such date, as in the opinion of counsel for the Underwriters, the

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Prospectus is no longer required by law to be delivered in connection with sales by an Underwriter or dealer (the "Prospectus Delivery Period"), prior to amending or supplementing the Registration Statement (including any 462(b) Registration Statement) or the Prospectus, the Company shall furnish to the Representative for review a copy of each such proposed amendment or supplement, and the Company shall not file any such proposed amendment or supplement to which the Representative reasonably objects.

(b) Securities Act Compliance. After the date of this Agreement, the Company shall promptly advise the Representative in writing (i) of the receipt of any comments of, or requests for additional or supplemental information from, the Commission, (ii) of the time and date of any filing of any post-effective amendment to the Registration Statement or any amendment or supplement to any preliminary prospectus or the Prospectus, (iii) of the time and date that any post-effective amendment to the Registration Statement becomes effective and (iv) of the issuance by the Commission of any stop order suspending the effectiveness of the Registration Statement or any post-effective amendment thereto or of any order preventing or suspending the use of any preliminary prospectus or the Prospectus, or of any proceedings to remove, suspend or terminate from listing or quotation the Common Stock from any securities exchange upon which it is listed for trading or included or designated for quotation, or of the threatening or initiation of any proceedings for any of such purposes. If the Commission shall enter any such stop order at any time, the Company will use its best efforts to obtain the lifting of such order at the earliest possible moment. Additionally, the Company agrees that it shall comply with the provisions of Rules 424(b), 430A and 434, as applicable, under the Securities Act and will use its reasonable efforts to confirm that any filings made by the Company under such Rule 424(b) were received in a timely manner by the Commission.

(c) Amendments and Supplements to the Prospectus and Other Securities Act Matters. If, during the Prospectus Delivery Period, any event shall occur or condition exist as a result of which it is necessary to amend or supplement the Prospectus in order to make the statements therein, in the light of the circumstances when the Prospectus is delivered to a purchaser, not misleading, or if in the opinion of the Representative or counsel for the Underwriters it is otherwise necessary to amend or supplement the Prospectus to comply with law, the Company agrees to promptly prepare (subject to Section 3(a) hereof), file with the Commission and furnish at its own expense to the Underwriters and to dealers, amendments or supplements to the Prospectus so that the statements in the Prospectus as so amended or supplemented will not, in the light of the circumstances when the Prospectus is delivered to a purchaser, be misleading or so that the Prospectus, as amended or supplemented, will comply with law. The Underwriters shall cease using the Prospectus upon receiving written notice from the Company that an amendment or supplement is required under this Section 3(c).

(d) Copies of any Amendments and Supplements to the Prospectus. The Company agrees to furnish the Representative, without charge, during the Prospectus Delivery Period, as many copies of the Prospectus and any amendments and supplements thereto as the Representative may reasonably request.

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(e) Blue Sky Compliance. The Company shall cooperate with the Representative and counsel for the Underwriters to qualify or register the Common Shares for sale under (or obtain exemptions from the application of) the state securities or blue sky laws or Canadian provincial Securities laws or other foreign laws of those jurisdictions designated by the Representative, shall comply with such laws and shall continue such qualifications, registrations and exemptions in effect so long as required for the distribution of the Common Shares. The Company shall not be required to qualify as a foreign corporation or to take any action that would subject it to general service of process in any such jurisdiction where it is not presently qualified or where it would be subject to taxation as a foreign corporation. The Company will advise the Representative promptly of the suspension of the qualification or registration of (or any such exemption relating to) the Common Shares for offering, sale or trading in any jurisdiction or any initiation or threat of any proceeding for any such purpose, and in the event of the issuance of any order suspending such qualification, registration or exemption, the Company shall use its reasonable best efforts to obtain the withdrawal thereof at the earliest possible moment.

(f) Use of Proceeds. The Company shall apply the net proceeds from the sale of the Common Shares sold by it in the manner described under the caption "Use of Proceeds" in the Prospectus.

(g) Transfer Agent. The Company shall engage and maintain, at its expense, a registrar and transfer agent for the Common Stock.

(h) Earnings Statement. As soon as practicable, the Company will make generally available to its security holders and to the Representative an earnings statement (which need not be audited) covering the twelve-month period ending [___], 2005 that satisfies the provisions of Section 11(a) of the Securities Act.

(i) Periodic Reporting Obligations. During the Prospectus Delivery Period the Company shall file, on a timely basis, with the Commission and the Nasdaq National Market all reports and documents required to be filed under the Exchange Act. Additionally, the Company shall report the use of proceeds from the issuance of the Common Shares as may be required under Rule 463 under the Securities Act.

(j) Quotation. The Company will use its best efforts to include, subject to notice of issuance, the Common Shares on the Nasdaq National Market.

(k) Agreement Not to Offer or Sell Additional Securities. During the period commencing on the date hereof and ending on the 180th day following the date of the Prospectus, the Company will not, without the prior written consent of BAS (which consent may be withheld at the sole discretion of BAS), directly or indirectly, sell, offer, contract or grant any option to sell, pledge, transfer or establish an open "put equivalent position" within the meaning of Rule 16a-1(h) under the Exchange Act, or otherwise dispose of or transfer, or announce the offering of, or file any registration statement (other than a registration statement on Form S-8) under the Securities Act in respect of, any shares of Common Stock, options or warrants to acquire shares of the Common

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Stock or securities exchangeable or exercisable for or convertible into shares of Common Stock (other than as contemplated by this Agreement with respect to the Common Shares); provided, however, that the Company may issue shares of its Common Stock or options or other similar rights to purchase its Common Stock, or Common Stock upon exercise of options or other similar rights, but only if (i) the holders of such shares, or shares issued upon exercise of such options, agree in writing not to sell, offer, dispose of or otherwise transfer any such shares during such 180 day period without the prior written consent of BAS (which consent may be withheld at the sole discretion of the BAS) and that the execution and delivery by such holder of a lock-up agreement substantially in the form attached hereto as Exhibit F shall satisfy such condition (ii) in the case of options granted during such 180 day period, (A) such options do not vest, in whole or in part, during such 180 day period or (B) the holder of such options agrees in writing not to sell, offer, dispose of or otherwise transfer any shares issuable upon exercise thereof during such 180 day period without the prior written consent of BAS (which consent may be withheld at the sole discretion of the BAS) and that the execution and delivery by such holder of a lock-up agreement substantially in the form attached hereto as Exhibit F shall satisfy such condition or (iii) in the case of shares issuable under a stock purchase plan, (A) such shares are not issued during such 180 day period or (B) the holder of such shares agrees in writing not to sell, offer, dispose of or otherwise transfer such shares during such 180 day period without the prior written consent of BAS (which consent may be withheld at the sole discretion of the BAS) and that the execution and delivery by such holder of a lock-up agreement substantially in the form attached hereto as Exhibit F shall satisfy such condition.

(l) Investment Limitation. The Company shall not invest, or otherwise use the proceeds received by the Company from its sale of the Common Shares in such a manner as would require the Company or any of its subsidiaries to register as an investment company under the Investment Company Act.

(m) No Manipulation of Price. The Company will not take, directly or indirectly, any action designed to cause or result in, or that has constituted or might reasonably be expected to constitute, the stabilization or manipulation of the price of any securities of the Company.

(n) Existing Lock-Up Agreement. The Company will enforce all existing agreements between the Company and any of its security holders that prohibit the sale, transfer, assignment, pledge or hypothecation of any of the Company's securities in connection with the Company's initial public offering. In addition, the Company will direct the transfer agent to place stop transfer restrictions upon any such securities of the Company that are bound by such existing "lock-up" agreements for the duration of the periods contemplated in such agreements.

BAS, on behalf of the several Underwriters, may, in its sole discretion, waive in writing the performance by the Company of any one or more of the foregoing covenants or extend the time for their performance.

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Section 4. Payment of Expenses. The Company agrees to pay all costs, fees and expenses incurred in connection with the performance of its obligations hereunder and in connection with the transactions contemplated hereby, including without limitation (i) all expenses incident to the issuance and delivery of the Common Shares (including all printing and engraving costs), (ii) all fees and expenses of the registrar and transfer agent of the Common Stock, (iii) all necessary issue, transfer and other stamp taxes in connection with the issuance and sale of the Common Shares to the Underwriters, (iv) all fees and expenses of the Company's counsel, independent public or certified public accountants and other advisors, (v) all costs and expenses incurred in connection with the preparation, printing, filing, shipping and distribution of the Registration Statement (including financial statements, exhibits, schedules, consents and certificates of experts), each preliminary prospectus and the Prospectus, and all amendments and supplements thereto, (vi) all filing fees, attorneys' fees and expenses incurred by the Company in connection with qualifying or registering (or obtaining exemptions from the qualification or registration of) all or any part of the Common Shares for offer and sale under the state securities or blue sky laws or the provincial securities laws of Canada, (vii) the fees and expenses associated with listing the Common Shares on the Nasdaq National Market, (viii) all other fees, costs and expenses referred to in Item 13 of Part II of the Registration Statement and (ix) to the extent approved in advance by the Company, all costs and expenses of the Underwriters, including the reasonable fees and disbursements of counsel for the Underwriters, in connection with matters related to the Directed Shares which are designated by the Company for sale to Participants. Except as provided in this Section 4,
Section 6, Section 8 and Section 9 hereof, the Underwriters shall pay their own expenses, including the fees and disbursements of their counsel.

Section 5. Conditions of the Obligations of the Underwriters. The obligations of the several Underwriters to purchase and pay for the Common Shares as provided herein on the First Closing Date and, with respect to the Optional Common Shares, the Second Closing Date, shall be subject to the accuracy of the representations and warranties on the part of the Company set forth in Section 1 hereof as of the date hereof and as of the First Closing Date as though then made and, with respect to the Optional Common Shares, as of the Second Closing Date as though then made, to the timely performance by the Company of its covenants and other obligations hereunder, and to each of the following additional conditions:

(a) Accountants' Comfort Letter. On the date hereof, the Representative shall have received from PricewaterhouseCoopers LLP, independent public or certified public accountants for the Company, a letter dated the date hereof addressed to the Underwriters, in form and substance satisfactory to the Representative, containing statements and information of the type ordinarily included in accountant's "comfort letters" to underwriters, delivered according to Statement of Auditing Standards No. 72 (or any successor bulletin), with respect to the audited and unaudited financial statements and certain financial information contained in the Registration Statement and the Prospectus (and the Representative shall have received an additional four conformed copies of such accountants' letter for each of the several Underwriters).

(b) Compliance with Registration Requirements; No Stop Order; No Objection from NASD. For the period from and after effectiveness of this Agreement and

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prior to the First Closing Date and, with respect to the Optional Common Shares, the Second Closing Date:

(i) the Company shall have filed the Prospectus with the Commission (including the information required by Rule 430A under the Securities Act) in the manner and within the time period required by Rule 424(b) under the Securities Act; or the Company shall have filed a post-effective amendment to the Registration Statement containing the information required by such Rule 430A, and such post-effective amendment shall have become effective; or, if the Company elected to rely upon Rule 434 under the Securities Act and obtained the Representative's consent thereto, the Company shall have filed a Term Sheet with the Commission in the manner and within the time period required by such Rule 424(b);

(ii) no stop order suspending the effectiveness of the Registration Statement, any Rule 462(b) Registration Statement, or any post-effective amendment to the Registration Statement, shall be in effect and no proceedings for such purpose shall have been instituted or, to the knowledge of the Company, threatened by the Commission; and

(iii) the NASD shall have raised no objection to the fairness and reasonableness of the underwriting terms and arrangements.

(c) No Material Adverse Change. For the period from and after the date of this Agreement and prior to the First Closing Date and, with respect to the Optional Common Shares, the Second Closing Date, in the judgment of the Representative there shall not have occurred any Material Adverse Change.

(d) Opinion of Counsel for the Company. On each of the First Closing Date and the Second Closing Date the Representative shall have received the favorable opinion of Hale and Dorr LLP, counsel for the Company, dated as of such Closing Date, the form of which is attached as Exhibit A (and the Representative shall have received an additional four conformed copies of such counsel's legal opinion for each of the several Underwriters).

(e) Opinion of German Counsel for the Company. On each of the First Closing Date and the Second Closing Date the Representative shall have received the favorable opinion of Hale and Dorr LLP, special German counsel for the Company, dated as of such Closing Date, the form of which is attached as Exhibit B (and the Representative shall have received an additional four conformed copies of such counsel's legal opinion for each of the several Underwriters).

(f) Opinion of IP Counsel for the Company. The Representatives shall have received from (i) Fish & Richardson P.C.; (ii) CMS Hasche Sigle, and (iii) Palmer & Dodge LLP, intellectual property counsel for the Company, such opinion or opinions, dated the Closing Date and addressed to the Representative (and the Representative shall have received an additional four conformed copies of each of such counsel's legal

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opinion for each of the several Underwriters), in the form and substance satisfactory to counsel for the Underwriters, to the effect as set forth in Exhibits C, D, and E hereto, and to such further effect as counsel to the Underwriters may reasonably request.

(g) Opinion of Counsel for the Underwriters. On each of the First Closing Date and the Second Closing Date the Representative shall have received the favorable opinion of Shearman & Sterling LLP, counsel for the Underwriters, dated as of such Closing Date, with respect to the matters set forth in paragraphs [(i), (vii) (with respect to subparagraph (i) only), (viii), (ix), (x), (xi), (xii) and (xiii) (with respect to the captions "Description of Capital Stock" and "Underwriting" under subparagraph (i) only),] and [the next-to-last paragraph] of Exhibit A (and the Representative shall have received an additional four conformed copies of such counsel's legal opinion for each of the several Underwriters).

(h) Officers' Certificate. On each of the First Closing Date and the Second Closing Date the Representative shall have received a written certificate executed by the Chairman of the Board, Chief Executive Officer or President of the Company and the Chief Operating Officer, Chief Accounting Officer or Treasurer of the Company, dated as of such Closing Date, to the effect set forth in subsections (b)(ii) of this
Section 5, and further to the effect that:

(i) for the period from and after the date of this Agreement and prior to such Closing Date, there has not occurred any Material Adverse Change;

(ii) the representations, warranties and covenants of the Company set forth in Section 1 of this Agreement are true and correct with the same force and effect as though expressly made on and as of such Closing Date; and

(iii) the Company has complied in all material respects with all the agreements hereunder and satisfied in all material respects all the conditions on its part to be performed or satisfied hereunder at or prior to such Closing Date.

(i) Bring-down Comfort Letter. On each of the First Closing Date and the Second Closing Date the Representative shall have received from PricewaterhouseCoopers LLP, independent public or certified public accountants for the Company, a letter dated such date, in form and substance satisfactory to the Representative, to the effect that they reaffirm the statements made in the letter furnished by them pursuant to subsection (a) of this Section 5, except that the specified date referred to therein for the carrying out of procedures shall be no more than three business days prior to the First Closing Date or Second Closing Date, as the case may be (and the Representative shall have received an additional four conformed copies of such accountants' letter for each of the several Underwriters).

(j) Lock-Up Agreement from Certain Securityholders of the Company. On or prior to the date hereof, the Company shall have furnished to the Representative an agreement in the form of Exhibit F hereto from each director, officer and each beneficial owner of at least 43,102 shares of Common Stock (as defined and determined

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according to Rule 13d-3 under the Exchange Act, except that a one hundred eighty day period shall be used rather than the sixty day period set forth therein), and such agreement shall be in full force and effect on each of the First Closing Date and the Second Closing Date.

(k) Additional Documents. On or before each of the First Closing Date and the Second Closing Date, the Representative and counsel for the Underwriters shall have received such information, documents and opinions as they may reasonably require for the purposes of enabling them to pass upon the issuance and sale of the Common Shares as contemplated herein, or in order to evidence the accuracy of any of the representations and warranties, or the satisfaction of any of the conditions or agreements, herein contained.

If any condition specified in this Section 5 is not satisfied when and as required to be satisfied, this Agreement may be terminated by the Representative by notice to the Company at any time on or prior to the First Closing Date and, with respect to the Optional Common Shares, at any time prior to the Second Closing Date, which termination shall be without liability on the part of any party to any other party, except that Section 4, Section 6, Section 8 and Section 9 shall at all times be effective and shall survive such termination.

Section 6. Reimbursement of Underwriters' Expenses. If this Agreement is terminated by the Representative pursuant to Section 5 (other than pursuant to
Section 5(b)(iii)), Section 7 or Section 11, or if the sale to the Underwriters of the Common Shares on the First Closing Date is not consummated because of any refusal, inability or failure on the part of the Company to perform any agreement herein or to comply with any provision hereof, the Company agrees to reimburse the Representative and the other Underwriters (or such Underwriters as have terminated this Agreement with respect to themselves), severally, upon demand for all out-of-pocket expenses that shall have been reasonably incurred by the Representative and the Underwriters in connection with the proposed purchase and the offering and sale of the Common Shares, including but not limited to reasonable fees and disbursements of counsel, printing expenses, travel expenses, postage, facsimile and telephone charges.

Section 7. Effectiveness of this Agreement. This Agreement shall not become effective until the later of (i) the execution of this Agreement by the parties hereto and (ii) notification by the Commission to the Company and the Representative of the effectiveness of the Registration Statement under the Securities Act.

Prior to such effectiveness, this Agreement may be terminated by any party by notice to each of the other parties hereto, and any such termination shall be without liability on the part of (a) the Company to any Underwriter, except that the Company shall be obligated to reimburse the expenses of the Representative and the Underwriters pursuant to Sections 4 and 6 hereof, (b) of any Underwriter to the Company, or (c) of any party hereto to any other party except that the provisions of Section 8 and Section 9 shall at all times be effective and shall survive such termination.

Section 8. Indemnification. (a) Indemnification of the Underwriters. The Company agrees to indemnify and hold harmless each Underwriter, its officers and employees, and each

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person, if any, who controls any Underwriter within the meaning of the Securities Act and the Exchange Act against any loss, claim, damage, liability or expense, as incurred, to which such Underwriter or such controlling person may become subject, under the Securities Act, the Exchange Act or other federal or state statutory law or regulation, or the laws or regulations of foreign jurisdictions where Directed Shares have been offered or at common law or otherwise (including in settlement of any litigation, if such settlement is effected with the written consent of the Company), insofar as such loss, claim, damage, liability or expense (or actions in respect thereof as contemplated below) arises out of or is based (i) upon any untrue statement or alleged untrue statement of a material fact contained in the Registration Statement, or any amendment thereto, including any information deemed to be a part thereof pursuant to Rule 430A or Rule 434 under the Securities Act, or the omission or alleged omission therefrom of a material fact required to be stated therein or necessary to make the statements therein not misleading; or (ii) upon any untrue statement or alleged untrue statement of a material fact contained in any preliminary prospectus or the Prospectus (or any amendment or supplement thereto), or the omission or alleged omission therefrom of a material fact necessary in order to make the statements therein, in the light of the circumstances under which they were made, not misleading; or (iii) any act or failure to act or any alleged act or failure to act by any Underwriter in connection with, or relating in any manner to, the Common Stock or the offering contemplated hereby, and which is included as part of or referred to in any loss, claim, damage, liability or action arising out of or based upon any matter covered by clause (i) or (ii) above, provided that the Company shall not be liable under this clause (iii) to the extent that a court of competent jurisdiction shall have determined by a final judgment that such loss, claim, damage, liability or action resulted directly from any such acts or failures to act undertaken or omitted to be taken by such Underwriter through its bad faith or willful misconduct and (B) the violation of any applicable laws or regulations of foreign jurisdictions where Directed Shares have been offered; and to reimburse each Underwriter and each such controlling person for any and all reasonable expenses (including the reasonable fees and disbursements of counsel chosen by BAS) as such expenses are reasonably incurred by such Underwriter or such controlling person in connection with investigating, defending, settling, compromising or paying any such loss, claim, damage, liability, expense or action; provided, however, that the foregoing indemnity agreement shall not apply to any loss, claim, damage, liability or expense to the extent, but only to the extent, arising out of or based upon any untrue statement or alleged untrue statement or omission or alleged omission made in reliance upon and in conformity with written information furnished to the Company by the Representative expressly for use in the Registration Statement, any preliminary prospectus or the Prospectus (or any amendment or supplement thereto); and provided, further, that with respect to any preliminary prospectus, the foregoing indemnity agreement shall not inure to the benefit of any Underwriter from whom the person asserting any loss, claim, damage, liability or expense purchased Common Shares, or any person controlling such Underwriter, if copies of the Prospectus were timely delivered to the Underwriter pursuant to Section 2 and a copy of the Prospectus (as then amended or supplemented if the Company shall have furnished any amendments or supplements thereto) was not sent or given by or on behalf of such Underwriter to such person, if required by law so to have been delivered, at or prior to the written confirmation of the sale of the Common Shares to such person, and if the Prospectus (as so amended or supplemented) would have cured the defect giving rise to such loss, claim, damage, liability or expense. The indemnity agreement set forth in this Section 8(a) shall be in addition to any liabilities that the Company may otherwise have.

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(b)Indemnification of the Company, its Directors and Officers. Each Underwriter agrees, severally and not jointly, to indemnify and hold harmless the Company, each of its directors, each of its officers who signed the Registration Statement and each person, if any, who controls the Company within the meaning of the Securities Act or the Exchange Act, against any loss, claim, damage, liability or expense, as incurred, to which the Company, or any such director, officer or controlling person may become subject, under the Securities Act, the Exchange Act, or other federal or state statutory law or regulation, the laws or regulations of foreign jurisdictions where Directed Shares have been offered or at common law or otherwise (including in settlement of any litigation, if such settlement is effected with the written consent of such Underwriter), insofar as such loss, claim, damage, liability or expense (or actions in respect thereof as contemplated below) arises out of or is based upon any untrue or alleged untrue statement of a material fact contained in the Registration Statement, any preliminary prospectus or the Prospectus (or any amendment or supplement thereto), or arises out of or is based upon the omission or alleged omission to state therein a material fact required to be stated therein or necessary to make the statements therein not misleading, in each case to the extent, but only to the extent, that such untrue statement or alleged untrue statement or omission or alleged omission was made in the Registration Statement, any preliminary prospectus, the Prospectus (or any amendment or supplement thereto), in reliance upon and in conformity with written information furnished to the Company by the Representative expressly for use therein; and to reimburse the Company, or any such director, officer or controlling person for any legal and other expense reasonably incurred by the Company, or any such director, officer or controlling person in connection with investigating, defending, settling, compromising or paying any such loss, claim, damage, liability, expense or action. The Company hereby acknowledges that the only information that the Underwriters have furnished to the Company expressly for use in the Registration Statement, any preliminary prospectus or the Prospectus (or any amendment or supplement thereto) are the statements set forth (A) in the table in the first paragraph under the caption "Underwriting" in the Registration Statement and the Prospectus and (B) the paragraphs under the subcaptions "Underwriting - Stabilization" and "Underwriting Discretionary - Accounts" in the Registration Statement and the Prospectus; and the Underwriters confirm that such statements are correct. The indemnity agreement set forth in this Section 8(b) shall be in addition to any liabilities that each Underwriter may otherwise have.

(c)Notifications and Other Indemnification Procedures. Promptly after receipt by an indemnified party under this Section 8 of notice of the commencement of any action, such indemnified party will, if a claim in respect thereof is to be made against an indemnifying party under this Section 8, notify the indemnifying party in writing of the commencement thereof, but the omission so to notify the indemnifying party will not relieve it from any liability which it may have to any indemnified party for contribution or otherwise than under the indemnity agreement contained in this Section 8 or to the extent it is not prejudiced as a proximate result of such failure. In case any such action is brought against any indemnified party and such indemnified party seeks or intends to seek indemnity from an indemnifying party, the indemnifying party will be entitled to participate in, and, to the extent that it shall elect, jointly with all other indemnifying parties similarly notified, by written notice delivered to the indemnified party promptly after receiving the aforesaid notice from such indemnified party, to assume the defense thereof with counsel reasonably satisfactory to such indemnified party; provided, however, if the defendants in any such action include both the indemnified party and the indemnifying party and the indemnified party shall have reasonably concluded that a conflict

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may arise between the positions of the indemnifying party and the indemnified party in conducting the defense of any such action or that there may be legal defenses available to it and/or other indemnified parties which are different from or additional to those available to the indemnifying party, the indemnified party or parties shall have the right to select separate counsel to assume such legal defenses and to otherwise participate in the defense of such action on behalf of such indemnified party or parties. Upon receipt of notice from the indemnifying party to such indemnified party of such indemnifying party's election so to assume the defense of such action and approval by the indemnified party of counsel, the indemnifying party will not be liable to such indemnified party under this Section 8 for any legal or other expenses subsequently incurred by such indemnified party in connection with the defense thereof unless (i) the indemnified party shall have employed separate counsel in accordance with the proviso to the next preceding sentence (it being understood, however, that the indemnifying party shall not be liable for the expenses of more than one separate counsel (together with local counsel), approved by the indemnifying party (BAS in the case of Section 8(b) and Section 9), representing the indemnified parties who are parties to such action) or (ii) the indemnifying party shall not have employed counsel satisfactory to the indemnified party to represent the indemnified party within a reasonable time after notice of commencement of the action, in each of which cases the fees and expenses of counsel shall be at the expense of the indemnifying party.

(d)Settlements. The indemnifying party under this Section 8 shall not be liable for any settlement of any proceeding effected without its written consent, but if settled with such consent or if there be a final judgment for the plaintiff, the indemnifying party agrees to indemnify the indemnified party against any loss, claim, damage, liability or expense by reason of such settlement or judgment. Notwithstanding the foregoing sentence, if at any time an indemnified party shall have requested an indemnifying party to reimburse the indemnified party for fees and expenses of counsel as contemplated by Section 8(c) hereof, the indemnifying party agrees that it shall be liable for any settlement of any proceeding effected without its written consent if (i) such settlement is entered into more than 30 days after receipt by such indemnifying party of the aforesaid request and (ii) such indemnifying party shall not have reimbursed the indemnified party in accordance with such request prior to the date of such settlement. No indemnifying party shall, without the prior written consent of the indemnified party, effect any settlement, compromise or consent to the entry of judgment in any pending or threatened action, suit or proceeding in respect of which any indemnified party is or could have been a party and indemnity was or could have been sought hereunder by such indemnified party, unless such settlement, compromise or consent includes an unconditional release of such indemnified party from all liability on claims that are the subject matter of such action, suit or proceeding.

(e)Indemnification for Directed Shares. In connection with the offer and sale of the Directed Shares, the Company agrees, promptly upon a request in writing, to indemnify and hold harmless the Underwriters from and against any and all losses, liabilities, claims, damages and expenses incurred by them as a result of the failure of the Participants to pay for and accept delivery of Directed Shares which, by the end of the first business day following the date of this Agreement, were subject to a properly confirmed agreement to purchase. The Company agrees to indemnify and hold harmless the Designated Underwriter, its officer and employees, and each person, if any, who controls the Designated Underwriter within the meaning of the Securities Act or the Exchange Act against any loss, claim, damage, liability or expense, as incurred, to which

23

such Designated Underwriter or such controlling person may become subject, which is (i) caused by any untrue statement or alleged untrue statement of a material fact contained in any material prepared by or with the consent of the Company for distribution to Participants in connection with the Directed Share Program or caused by any omission or alleged omission to state therein a material fact required to be stated therein or necessary to make the statements therein not misleading; (ii) caused by the failure of any Participant to pay for and accept delivery of Directed Shares that such Participant agreed to purchase; or (iii) related to, arising out of, or in connection with the Directed Share Program. The indemnity agreement set forth in this paragraph shall be in addition to any liabilities that the Company may otherwise have.

Section 9. Contribution. If the indemnification provided for in Section 8 is for any reason held to be unavailable to or otherwise insufficient to hold harmless an indemnified party in respect of any losses, claims, damages, liabilities or expenses referred to therein, then each indemnifying party shall contribute to the aggregate amount paid or payable by such indemnified party, as incurred, as a result of any losses, claims, damages, liabilities or expenses referred to therein (i) in such proportion as is appropriate to reflect the relative benefits received by the Company, on the one hand, and the Underwriters, on the other hand, from the offering of the Common Shares pursuant to this Agreement or (ii) if the allocation provided by clause (i) above is not permitted by applicable law, in such proportion as is appropriate to reflect not only the relative benefits referred to in clause (i) above but also the relative fault of the Company, on the one hand, and the Underwriters, on the other hand, in connection with the statements or omissions or inaccuracies in the representations and warranties herein which resulted in such losses, claims, damages, liabilities or expenses, as well as any other relevant equitable considerations. The relative benefits received by the Company, on the one hand, and the Underwriters, on the other hand, in connection with the offering of the Common Shares pursuant to this Agreement shall be deemed to be in the same respective proportions as the total net proceeds from the offering of the Common Shares pursuant to this Agreement (before deducting expenses) received by the Company, and the total underwriting discount received by the Underwriters, in each case as set forth on the front cover page of the Prospectus (or, if Rule 434 under the Securities Act is used, the corresponding location on the Term Sheet) bear to the aggregate initial public offering price of the Common Shares as set forth on such cover. The relative fault of the Company, on the one hand, and the Underwriters, on the other hand, shall be determined by reference to, among other things, whether any such untrue or alleged untrue statement of a material fact or omission or alleged omission to state a material fact or any such inaccurate or alleged inaccurate representation or warranty relates to information supplied by the Company, on the one hand, or the Underwriters, on the other hand, and the parties' relative intent, knowledge, access to information and opportunity to correct or prevent such statement or omission.

The amount paid or payable by a party as a result of the losses, claims, damages, liabilities and expenses referred to above shall be deemed to include, subject to the limitations set forth in Section 8(c), any legal or other fees or expenses reasonably incurred by such party in connection with investigating or defending any action or claim. The provisions set forth in Section 8(c) with respect to notice of commencement of any action shall apply if a claim for contribution is to be made under this Section 9; provided, however, that no additional notice shall be required with respect to any action for which notice has been given under Section 8(c) for purposes of indemnification.

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The Company and the Underwriters agree that it would not be just and equitable if contribution pursuant to this Section 9 were determined by pro rata allocation (even if the Underwriters were treated as one entity for such purpose) or by any other method of allocation which does not take account of the equitable considerations referred to in this Section 9.

Notwithstanding the provisions of this Section 9, no Underwriter shall be required to contribute any amount in excess of the underwriting commissions received by such Underwriter in connection with the Common Shares underwritten by it and distributed to the public. No person guilty of fraudulent misrepresentation (within the meaning of Section 11(f) of the Securities Act) shall be entitled to contribution from any person who was not guilty of such fraudulent misrepresentation. The Underwriters' obligations to contribute pursuant to this Section 9 are several, and not joint, in proportion to their respective underwriting commitments as set forth opposite their names in Schedule A. For purposes of this Section 9, each officer and employee of an Underwriter and each person, if any, who controls an Underwriter within the meaning of the Securities Act and the Exchange Act shall have the same rights to contribution as such Underwriter, and each director of the Company, each officer of the Company who signed the Registration Statement, and each person, if any, who controls the Company with the meaning of the Securities Act and the Exchange Act shall have the same rights to contribution as the Company.

Section 10. Default of One or More of the Several Underwriters. If, on the First Closing Date or the Second Closing Date, as the case may be, any one or more of the several Underwriters shall fail or refuse to purchase Common Shares that it or they have agreed to purchase hereunder on such date, and the aggregate number of Common Shares which such defaulting Underwriter or Underwriters agreed but failed or refused to purchase does not exceed 10% of the aggregate number of the Common Shares to be purchased on such date, the other Underwriters shall be obligated, severally, in the proportions that the number of Firm Common Shares set forth opposite their respective names on Schedule A bears to the aggregate number of Firm Common Shares set forth opposite the names of all such non-defaulting Underwriters, or in such other proportions as may be specified by the Representative with the consent of the non-defaulting Underwriters, to purchase the Common Shares which such defaulting Underwriter or Underwriters agreed but failed or refused to purchase on such date. If, on the First Closing Date or the Second Closing Date, as the case may be, any one or more of the Underwriters shall fail or refuse to purchase Common Shares and the aggregate number of Common Shares with respect to which such default occurs exceeds 10% of the aggregate number of Common Shares to be purchased on such date, and arrangements satisfactory to the Representative and the Company for the purchase of such Common Shares are not made within 48 hours after such default, this Agreement shall terminate without liability of any party to any other party except that the provisions of Section 4, Section 6, Section 8 and
Section 9 shall at all times be effective and shall survive such termination. In any such case either the Representative or the Company shall have the right to postpone the First Closing Date or the Second Closing Date, as the case may be, but in no event for longer than seven days in order that the required changes, if any, to the Registration Statement and the Prospectus or any other documents or arrangements may be effected.

As used in this Agreement, the term "Underwriter" shall be deemed to include any person substituted for a defaulting Underwriter under this Section
10. Any action taken under this

25

Section 10 shall not relieve any defaulting Underwriter from liability in respect of any default of such Underwriter under this Agreement.

Section 11. Termination of this Agreement. Prior to the First Closing Date this Agreement may be terminated by the Representative by notice given to the Company if at any time (i) trading or quotation in any of the Company's securities shall have been suspended or limited by the Commission or by the Nasdaq National Market; (ii) trading in securities generally on either the Nasdaq Stock Market or the New York Stock Exchange shall have been suspended or limited, or minimum or maximum prices shall have been generally established on any of such stock exchanges by the Commission or the NASD; (iii) a general banking moratorium shall have been declared by any of federal, New York, Delaware or California authorities; (iv) there shall have occurred any outbreak or escalation of national or international hostilities or any crisis or calamity, or any change in the United States or international financial markets, or any substantial change or development involving a prospective substantial change in United States' or international political, financial or economic conditions, as in the judgment of the Representative is material and adverse and makes it impracticable to market the Common Shares in the manner and on the terms described in the Prospectus or to enforce contracts for the sale of securities; (v) in the judgment of the Representative there shall have occurred any Material Adverse Change; or (vi) the Company shall have sustained a loss by strike, fire, flood, earthquake, accident or other calamity of such character as in the judgment of the Representative may interfere materially with the conduct of the business and operations of the Company regardless of whether or not such loss shall have been insured. Any termination pursuant to this Section 11 shall be without liability on the part of (a) the Company to any Underwriter, except that under certain circumstances the Company shall be obligated to reimburse the expenses of the Representative and the Underwriters pursuant to Sections 4 and 6 hereof, (b) any Underwriter to the Company, or (c) of any party hereto to any other party except that the provisions of Section 8 and Section 9 shall at all times be effective and shall survive such termination.

Section 12. Representations and Indemnities to Survive Delivery. The respective indemnities, agreements, representations, warranties and other statements of the Company, of its officers and of the several Underwriters set forth in or made pursuant to this Agreement will remain in full force and effect, regardless of any investigation made by or on behalf of any Underwriter or the Company or any of its or their partners, officers or directors or any controlling person, as the case may be, and will survive delivery of and payment for the Common Shares sold hereunder and any termination of this Agreement.

Section 13. Notices. All communications hereunder shall be in writing and shall be mailed, hand delivered or telecopied and confirmed to the parties hereto as follows:

If to the Representative:

Banc of America Securities LLC
9 West 57th Street
New York, New York 10019
Facsimile: (212) 583-8567
Attention: Thomas M. Morrison

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and

Shearman & Sterling LLP
599 Lexington Avenue
New York, New York 10022
Facsimile: (646) 848-8244
Attention: Danielle Carbone

If to the Company:

790 Memorial Drive
Cambridge, Massachusetts 02139

Facsimile: (617) 252-0011
Attention: Chief Operating Officer

and

Hale and Dorr LLP
60 State Street
Boston, Massachusetts 02109
Facsimile: (617) 526-5000
Attention: Steven D. Singer

Any party hereto may change the address for receipt of communications by giving written notice to the others.

Section 14. Successors. This Agreement will inure to the benefit of and be binding upon the parties hereto, including any substitute Underwriters pursuant to Section 10 hereof, and to the benefit of the employees, officers and directors and controlling persons referred to in Section 8 and Section 9, and in each case their respective successors, and no other person will have any right or obligation hereunder. The term "successors" shall not include any purchaser of the Common Shares as such from any of the Underwriters merely by reason of such purchase.

Section 15. Partial Unenforceability. The invalidity or unenforceability of any Section, paragraph or provision of this Agreement shall not affect the validity or enforceability of any other Section, paragraph or provision hereof. If any Section, paragraph or provision of this Agreement is for any reason determined to be invalid or unenforceable, there shall be deemed to be made such minor changes (and only such minor changes) as are necessary to make it valid and enforceable.

Section 16. Governing Law Provisions. THIS AGREEMENT SHALL BE GOVERNED
BY AND CONSTRUED IN ACCORDANCE WITH THE INTERNAL LAWS OF THE STATE OF NEW YORK APPLICABLE TO AGREEMENTS MADE AND TO BE PERFORMED IN SUCH STATE.

Section 17. General Provisions. This Agreement constitutes the entire agreement of the parties to this Agreement and supersedes all prior written or oral and all contemporaneous oral agreements, understandings and negotiations with respect to the subject matter hereof. This

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Agreement may be executed in two counterparts, each one of which shall be an original, with the same effect as if the signatures thereto and hereto were upon the same instrument. This Agreement may not be amended or modified unless in writing by all of the parties hereto, and no condition herein (express or implied) may be waived unless waived in writing by each party whom the condition is meant to benefit. The Table of Contents and the Section headings herein are for the convenience of the parties only and shall not affect the construction or interpretation of this Agreement.

Each of the parties hereto acknowledges that it is a sophisticated business person who was adequately represented by counsel during negotiations regarding the provisions hereof, including, without limitation, the indemnification provisions of Section 8 and the contribution provisions of
Section 9, and is fully informed regarding said provisions. Each of the parties hereto further acknowledges that the provisions of Sections 8 and 9 hereto fairly allocate the risks in light of the ability of the parties to investigate the Company, its affairs and its business in order to assure that adequate disclosure has been made in the Registration Statement, any preliminary prospectus and the Prospectus (and any amendments and supplements thereto), as required by the Securities Act and the Exchange Act.

The respective indemnities, contribution agreements, representations, warranties and other statements of the Company and the several Underwriters set forth in or made pursuant to this Agreement shall remain operative and in full force and effect, regardless of (i) any investigation, or statement as to the results thereof, made by or on behalf of any Underwriter, the officers or employees of any Underwriter, any person controlling any Underwriter, the Company, the officers or employees of the Company, any person controlling the Company, (ii) acceptance of the Shares and payment for them hereunder and (iii) termination of this Agreement.

Except as otherwise provided, this Agreement has been and is made solely for the benefit of and shall be binding upon the Company, the Underwriters, the Underwriters' officers and employees, any controlling persons referred to herein, the Company's directors and the Company's officers who sign the Registration Statement and their respective successors and assigns, all as and to the extent provided in this Agreement, and no other person shall acquire or have any right under or by virtue of this Agreement. The term "successors and assigns" shall not include a purchaser of any of the Shares from any of the several Underwriters merely because of such purchase.

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If the foregoing is in accordance with your understanding of our agreement, kindly sign and return to the Company the enclosed copies hereof, whereupon this instrument, along with all counterparts hereof, shall become a binding agreement in accordance with its terms.

Very truly yours,

ALNYLAM PHARMACEUTICALS, INC.

By:

The foregoing Underwriting Agreement is hereby confirmed and accepted by the Representatives as of the date first above written.

BANC OF AMERICA SECURITIES LLC
CITIGROUP GLOBAL MARKETS INC.
PIPER JAFFRAY & CO.
THINKEQUITY PARTNERS LLC

Acting as Representative of
the several Underwriters named
in the attached Schedule A.

By: Banc of America Securities LLC

By:

Managing Director

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SCHEDULE A

UNDERWRITERS                                                     NUMBER OF FIRM
                                                                 COMMON SHARES
                                                                 TO BE PURCHASED
                                                                 ---------------
Banc of America Securities LLC............................                 [___]
Citigroup Global Markets Inc. ............................                 [___]
Piper Jaffray & Co. ......................................                 [___]
ThinkEquity Partners LLC..................................                 [___]

        Total.............................................                 [___]


EXHIBIT A

THE FINAL OPINION IN DRAFT FORM SHOULD BE ATTACHED AS EXHIBIT A

AT THE TIME THIS AGREEMENT IS EXECUTED.

Opinion of counsel for the Company to be delivered pursuant to Section 5(d) of the Underwriting Agreement.

References to the Prospectus in this Exhibit A include any supplements thereto at the Closing Date.

(i) The Company has been duly incorporated and is validly existing as a corporation in good standing under the laws of the State of Delaware.

(ii) The Company has the corporate power and authority (A) to own, lease and operate its properties and to carry on its business, as such properties and business are described in the Prospectus, and (B) to enter into the Underwriting Agreement and to consummate the transactions contemplated by the Underwriting Agreement.

(iii) The Company is duly qualified as a foreign corporation to transact business and is in good standing as a foreign corporation in the Commonwealth of Massachusetts.

(iv) Alnylam U.S., Inc. has been duly incorporated and is validly existing as a corporation in good standing under the laws of the State of Delaware, has the corporate power and authority to own, lease and operate the properties that, to the knowledge of such counsel, it currently owns, leases and operates, and to conduct its business as it is, to the knowledge of such counsel, currently conducted, and is duly qualified as a foreign corporation to transact business and is in good standing as a foreign corporation in the Commonwealth of Massachusetts.

(v) All of the outstanding shares of capital stock of Alnylam U.S., Inc. have been duly authorized and are validly issued, fully paid and non-assessable, and are owned of record by the Company.

(vi) All of the outstanding shares of Common Stock of the Company have been duly authorized, and are validly issued, fully paid and nonassessable and, to the best of such counsel's knowledge, have been issued in compliance with the registration and qualification requirements of federal and state securities laws. The form of certificate used to evidence the Common Stock is in due and proper form and complies with all applicable requirements of the charter and by-laws of the Company and the General Corporation Law of the State of Delaware.

(vii) The Underwriting Agreement has been duly authorized, executed and delivered by the Company.

(viii) The Common Shares to be purchased by the Underwriters from the Company have been duly authorized for issuance and sale pursuant to the Underwriting Agreement and, when issued and delivered by the Company to the Underwriters pursuant to the Underwriting Agreement against payment therefor as provided by the Underwriting Agreement, will be validly issued, fully paid and nonassessable, and the issuance of such Common Shares will not be

A-1

subject to any preemptive rights under the Delaware General Corporation Law statute or the Certificate of Incorporation or, to the knowledge of such counsel, similar contractual rights granted by the Company (except for such preemptive or contractual rights as have been waived).

(ix) Each of the Registration Statement and the Rule 462(b) Registration Statement, if any, has been declared effective by the Commission under the Securities Act. To the best knowledge of such counsel, (A) no stop order suspending the effectiveness of either of the Registration Statement or the Rule
462(b) Registration Statement, if any, has been issued under the Securities Act and (B) no proceedings for such purpose are pending before or threatened by the Commission. Any required filing of the Prospectus and any supplement thereto pursuant to Rule 424(b) under the Securities Act has been made in the manner and within the time period required by such Rule 424(b).

(x) [The Common Shares have been approved for listing on the Nasdaq National Market].

(xi) The statements (i) in the Prospectus under the captions "Business - Patents and Proprietary Rights - [ ]," "Business -- Regulatory Matters" [(other than the statements under the captions "Foreign Regulation of New Drug Compounds" and "Hazardous Materials")], "Description of Capital Stock", "Shares Eligible for Future Sale", and "Material United States Federal Tax Considerations for Non-United States holders of Our Common Stock" and "Underwriting", insofar as such statements constitute matters of law or legal conclusions, or summarize the terms of agreements, and (ii) in Item 14 and Item 15 of Part II of the Registration Statement, insofar as such statements constitute matters of law, or legal conclusions, or summarize, the terms of agreements, are correct in all material respects.

(xii) To the knowledge of such counsel, there is no action, proceeding or litigation pending or threatened against the Company before any court, governmental or administrative agency or body that is required by the Securities Act or the rules and regulations thereunder to be described in the Registration Statement, or the Prospectus that is not so described.

(xiii) Except as may be required under the Securities Act and the rules and regulations of the Commission thereunder and the Securities Exchange Act of 1934, as amended, and the rules and regulations of the Commission thereunder, no filing with, or authorization, approval, consent, order, registration, qualification or decree of, any United States federal or Massachusetts state governmental authority or agency is necessary for the issuance, sale and delivery of the Common Shares by the Company to the Underwriters pursuant to the Underwriting Agreement.

(xiv) The execution and delivery of the Underwriting Agreement by the Company and the consummation by the Company of the transactions contemplated thereby have been duly authorized by all necessary corporate action on the part of the Company, and will not (A) conflict with or constitute a breach of any of the terms or provisions of, or a default under, the Certificate of Incorporation or Bylaws or any indenture, loan agreement, mortgage, lease or other agreement or instrument to which the Company is a party and that is filed as an exhibit to the Registration Statement or (B) violate or conflict with any United States federal or Massachusetts state law, rule or regulation that in the experience of such counsel is normally applicable in transactions of the type contemplated by the Underwriting Agreement, the Delaware General

A-2

Corporation Law statute, or any judgment, order or decree specifically naming the Company of which such counsel is aware or (C) to the best knowledge of such counsel constitute a breach of, or Default under, or result in the creation or imposition of any lien, charge or encumbrance upon any property or assets of the Company or any of its subsidiaries pursuant to any other material Existing Instrument;

(xv) The Company is not and, after giving effect to the offering and sale of the Common Shares and the application of the proceeds thereof as described in the Prospectus, will not be an "investment company," as such term is defined in the Investment Company Act of 1940, as amended.

(xvi) To the knowledge of such counsel, except as described in the Registration Statement, there are no contracts, agreements or understandings between the Company and any person granting such person the right to require the Company to file a registration statement under the Securities Act with respect to any securities of the Company or to require the Company to include such securities with the Shares registered pursuant to the Registration Statement, except for any such rights as have been waived.

(xvii) [To the best knowledge of such counsel, neither the Company nor any subsidiary is in violation of its charter or by-laws or any law, administrative regulation or administrative or court decree applicable to the Company or any subsidiary or is in Default in the performance or observance of any obligation, agreement, covenant or condition contained in any material Existing Instrument, except in each such case for such violations or Defaults as would not, individually or in the aggregate, result in a Material Adverse Change.]

In addition to the opinions set forth above, such counsel will confirm that: In the course of acting as counsel for the Company in connection with the preparation of the Registration Statement and the Prospectus, they have participated in conferences with officers and other representatives of the Company, representatives of and counsel for the Underwriters and representatives of the independent public accountants of the Company, during which the contents of the Registration Statement and the Prospectus were discussed. While the limitations inherent in the independent verification of factual matters and the character of determinations involved in the registration process are such that they are not passing upon and do not assume any responsibility for the accuracy, completeness or fairness of the statements contained in the Registration Statement or the Prospectus (except to the extent expressly set forth in paragraph (xii) above), subject to the foregoing and based on such participation and discussions:

(A) the Registration Statement, as of the date on which it was declared effective under the Securities Act (the "Effective Date"), and the Prospectus, as of the date thereof (except for the financial statements, including the notes and schedules thereto, and other financial, and accounting data, as to which it is understood that such counsel need express no view) appear on their face to be appropriately responsive in all material respects to the requirements of the Securities Act and the applicable rules and regulations of the Commission thereunder,

(B) no facts have come to such counsel's attention that have caused them to believe that (i) the Registration Statement, as of the Effective Date, contained an untrue

A-3

statement of a material fact or omitted to state a material fact required to be stated therein or necessary to make the statements therein not misleading (it being understood that counsel need express no belief as to the information as set forth in the parenthetical in clause (A) above) or (ii) the Prospectus, as of the date it was filed with the Commission pursuant to Rule 424(b)) under the Securities Act or as of the First Closing Date or Second Closing Date, as the case may be, contained or contains an untrue statement of a material fact or omitted or omits to state a material fact necessary in order to make the statements therein, in the light of the circumstances under which they were made, not misleading (it being understood that counsel need express no belief as to the information as set forth in the parenthetical in clause (A) above), and

(C) such counsel is not aware of any contract or other document of a character required by the Securities Act and the applicable rules and regulations of the Commission thereunder to be filed as an exhibit to the Registration Statement that is not so filed.

A-4

EXHIBIT B

THE FINAL OPINIONS IN DRAFT FORM SHOULD BE ATTACHED AS EXHIBIT B

AT THE TIME THIS AGREEMENT IS EXECUTED.

Opinion of counsel for the Company to be delivered pursuant to Section 5(e) of the Underwriting Agreement.

References to the Prospectus in this Exhibit A include any supplements thereto at the Closing Date.

(i) Alnylam Europe, AG is a stock corporation (Aktiengesellschaft) duly established and validly existing under the laws of Germany. Alnylam Europe, AG is duly registered in the Commercial Register under the docket No. HRB 3302.

(ii) The current business of the Company, as described in the Prospectus, is in accordance with the object of Alnylam Europe, AG as set forth in its Bylaws. Alnylam Europe, AG is a legal entity with the power and authority to own, lease and operate its properties and to conduct its business, as such properties and business are described in the Prospectus.

(iii) Alnylam Europe, AG has a share capital of Euro 68,560, all of which is fully paid and owned of record by the Company, directly or through subsidiaries, free and clear of any security interest, mortgage, pledge, lien, encumbrance or, to the best knowledge of such counsel, any pending or threatened claim.

B-1

EXHIBIT C

THE FINAL OPINIONS IN DRAFT FORM SHOULD BE ATTACHED AS EXHIBITS C

AT THE TIME THIS AGREEMENT IS EXECUTED.

Opinion of counsel for the Company to be delivered pursuant to Section 5(f)(i) of the Underwriting Agreement.

[I.P. OPINION OF FISH & RICHARDSON TO BE INSERTED]

C-1

EXHIBIT D

THE FINAL OPINIONS IN DRAFT FORM SHOULD BE ATTACHED AS EXHIBITS D

AT THE TIME THIS AGREEMENT IS EXECUTED.

Opinion of counsel for the Company to be delivered pursuant to Section 5(f)(ii) of the Underwriting Agreement.

[I.P. OPINION FOLEY HOAG TO BE INSERTED]

D-1

EXHIBIT E

THE FINAL OPINIONS IN DRAFT FORM SHOULD BE ATTACHED AS EXHIBITS E

AT THE TIME THIS AGREEMENT IS EXECUTED.

Opinion of counsel for the Company to be delivered pursuant to Section 5(f)(iii) of the Underwriting Agreement.

[I.P. OPINION OF PALMER & DODGE TO BE INSERTED

E-1

EXHIBIT F

[Date]

Banc of America Securities LLC
Citigroup Global Markets Inc.
Piper Jaffray & Co.
ThinkEquity Partners LLC
As Representatives of the Several Underwriters

c/o Banc of America Securities LLC
600 Montgomery Street
San Francisco, California 94111

Re: Alnylam Holding Co. (the "Company")

Ladies and Gentlemen:

The undersigned is an owner of record or beneficially of certain shares of Common Stock of the Company ("Common Stock") or securities convertible into or exchangeable or exercisable for Common Stock. The Company proposes to enter into an Underwriting Agreement with you (the "Underwriting Agreement") and carry out a public offering of Common Stock (the "Offering") for which you will act as the representatives of the underwriters. The undersigned recognizes that the Offering will be of benefit to the undersigned and will benefit the Company by, among other things, raising additional capital for its operations. The undersigned acknowledges that you and the other underwriters are relying on the representations and agreements of the undersigned contained in this letter in carrying out the Offering and in entering into underwriting arrangements with the Company with respect to the Offering.

F-1

In consideration of the foregoing, the undersigned hereby agrees that the undersigned will not, (and will cause any spouse or immediate family member of the spouse or the undersigned living in the undersigned's household not to), without the prior written consent of Banc of America Securities LLC (which consent may be withheld in its sole discretion), directly or indirectly, sell, offer, contract or grant any option to sell (including without limitation any short sale), pledge, transfer, establish an open "put equivalent position" within the meaning of Rule 16a-1(h) under the Securities Exchange Act of 1934, as amended (the "Exchange Act"), or otherwise dispose of any shares of Common Stock, options or warrants to acquire shares of Common Stock, or securities exchangeable or exercisable for or convertible into shares of Common Stock currently or hereafter owned either of record or beneficially (as defined in Rule 13d-3 under the Securities Exchange Act of 1934, as amended) by the undersigned (or such spouse or family member), or publicly announce an intention to do any of the foregoing, for a period commencing on the date hereof and continuing through the close of trading on the date 180 days after the date of the Prospectus. The foregoing sentence shall not apply to (i) transactions relating to shares of Common Stock or other securities acquired in open market transactions after completion of the Offering or (ii) the transfer of any or all shares of Common Stock of the undersigned, either during his or her lifetime or on death, by gift, will or intestate succession to the immediate family of the undersigned or to a trust the beneficiaries of which are exclusively the undersigned and/or a member or members of his or her immediate family, and (iii) distributions of shares of Common Stock or any security convertible into Common Stock to limited partners or stockholders of the undersigned provided such transfer does not cause any filing under Section 16(a) of the Exchange Act; and provided further, however, that in any such case it shall be a condition to such transfer that the transferee executes and delivers to Banc of America Securities LLC an agreement stating that the transferee in receiving and holding the Common Stock subject to the provisions of this letter agreement, and there shall be no further transfer of such Common Stock except in accordance with this letter. In addition, the foregoing restriction shall not prohibit the exercise by the undersigned of an option to purchase shares of Common Stock of the Company issued under the Company's stock incentive plans, provided that the shares of Common Stock issued upon such exercise shall be subject to the foregoing restriction.

The undersigned also agrees and consents to the entry of stop transfer instructions with the Company's transfer agent and registrar against the transfer of shares of Common Stock or securities convertible into or exchangeable or exercisable for Common Stock held by the undersigned except in compliance with the foregoing restrictions.

With respect to the Offering only, the undersigned waives any registration rights relating to registration under the Securities Act of any Common Stock owned either of record or beneficially by the undersigned, including any rights to receive notice of the Offering.

This agreement shall automatically terminate upon the earliest to occur, if any, of: (a) either Banc of America Securities LLC, on the one hand, or the Company, on the other hand, advising the other in writing, prior to the execution of the Underwriting Agreement, that is has determined not to proceed with the Offering, (b) termination of the Underwriting Agreement entered into between the Company and the underwriters before the sale of any Shares to the underwriters or (c) August 15, 2004, in the event that the registration statement has not been declared effective by that date.

F-2

This agreement is irrevocable and will be binding on the undersigned and the respective successors, heirs, personal representatives, and assigns of the undersigned.


Printed Name of Holder

By:

Signature


Printed Name of Person Signing
(and indicate capacity of person signing if signing as custodian, trustee, or on behalf of an entity)

F-3

EXHIBIT 3.1

CERTIFICATE OF INCORPORATION

OF

ALNYLAM HOLDING CO.

FIRST: The name of the Corporation is Alnylam Holding Co.

SECOND: The address of its registered office in the State of Delaware is Corporation Trust Center, 1209 Orange Street, in the City of Wilmington, County of New Castle. The name of its registered agent at such address is The Corporation Trust Company.

THIRD: The nature of the business or purposes to be conducted or promoted by the Corporation is as follows:

To engage in any lawful act or activity for which corporations may be organized under the General Corporation Law of Delaware.

FOURTH: The total number of shares of stock which the Corporation shall have authority to issue is 3,000 shares of Common Stock, $0.01 par value per share.

The number of authorized shares of Common Stock may be increased or decreased (but not below the number of shares thereof then outstanding) by the affirmative vote of the holders of a majority of the stock of the Corporation entitled to vote, irrespective of the provisions of Section 242(b)(2) of the General Corporation Law of Delaware.

FIFTH: The name and mailing address of the sole incorporator are as follows:

NAME                                          MAILING ADDRESS
----                                          ---------------
John Conley                                   790 Memorial Drive
                                              Cambridge, MA 02139

SIXTH: In furtherance of and not in limitation of powers conferred by statute, it is further provided:

1. Election of directors need not be by written ballot.

2. The Board of Directors is expressly authorized to adopt, amend or repeal the By-Laws of the Corporation.

SEVENTH: Except to the extent that the General Corporation Law of Delaware prohibits the elimination or limitation of liability of directors for breaches of fiduciary duty, no director of the Corporation shall be personally liable to the Corporation or its stockholders for


monetary damages for any breach of fiduciary duty as a director, notwithstanding any provision of law imposing such liability. No amendment to or repeal of this provision shall apply to or have any effect on the liability or alleged liability of any director of the Corporation for or with respect to any acts or omissions of such director occurring prior to such amendment.

EIGHTH: The Corporation shall, to the fullest extent permitted by
Section 145 of the General Corporation Law of Delaware, as amended from time to time, indemnify each person who was or is a party or is threatened to be made a party to any threatened, pending or completed action, suit or proceeding, whether civil, criminal, administrative or investigative, by reason of the fact that he or she is or was, or has agreed to become, a director or officer of the Corporation, or is or was serving, or has agreed to serve, at the request of the Corporation, as a director, officer, partner, employee or trustee of, or in a similar capacity with, another corporation, partnership, joint venture, trust or other enterprise (including any employee benefit plan) (all such persons being referred to hereafter as an "Indemnitee"), or by reason of any action alleged to have been taken or omitted in such capacity, against all expenses (including attorneys' fees), judgments, fines and amounts paid in settlement actually and reasonably incurred by or on behalf of an Indemnitee in connection with such action, suit or proceeding and any appeal therefrom.

As a condition precedent to an Indemnitee's right to be indemnified, the Indemnitee must notify the Corporation in writing as soon as practicable of any action, suit, proceeding or investigation involving such Indemnitee for which indemnity will or could be sought. With respect to any action, suit, proceeding or investigation of which the Corporation is so notified, the Corporation will be entitled to participate therein at its own expense and/or to assume the defense thereof at its own expense, with legal counsel reasonably acceptable to the Indemnitee.

In the event that the Corporation does not assume the defense of any action, suit, proceeding or investigation of which the Corporation receives notice under this Article, the Corporation shall pay in advance of the final disposition of such matter any expenses (including attorneys' fees) incurred by an Indemnitee in defending a civil or criminal action, suit, proceeding or investigation or any appeal therefrom; provided, however, that the payment of such expenses incurred by an Indemnitee in advance of the final disposition of such matter shall be made only upon receipt of an undertaking by or on behalf of the Indemnitee to repay all amounts so advanced in the event that it shall ultimately be determined that the Indemnitee is not entitled to be indemnified by the Corporation as authorized in this Article, which undertaking shall be accepted without reference to the financial ability of the Indemnitee to make such repayment; and further provided that no such advancement of expenses shall be made under this Article if it is determined that (i) the Indemnitee did not act in good faith and in a manner he reasonably believed to be in, or not opposed to, the best interests of the Corporation, or (ii) with respect to any criminal action or proceeding, the Indemnitee had reasonable cause to believe his conduct was unlawful.

The Corporation shall not indemnify an Indemnitee pursuant to this Article in connection with a proceeding (or part thereof) initiated by such Indemnitee unless the initiation thereof was approved by the Board of Directors of the Corporation. In addition, the Corporation shall not indemnify an Indemnitee to the extent such Indemnitee is reimbursed from the proceeds of insurance, and in the event the Corporation makes any indemnification payments to an

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Indemnitee and such Indemnitee is subsequently reimbursed from the proceeds of insurance, such Indemnitee shall promptly refund such indemnification payments to the Corporation to the extent of such insurance reimbursement.

All determinations hereunder as to the entitlement of an Indemnitee to indemnification or advancement of expenses shall be made in each instance (a) by a majority vote of the directors of the Corporation consisting of persons who are not at that time parties to the action, suit or proceeding in question ("disinterested directors"), whether or not a quorum, (b) by a committee of disinterested directors designated by majority vote of disinterested directors, whether or not a quorum, (c) if there are no disinterested directors, or if the disinterested directors so direct, by independent legal counsel (who may, to the extent permitted by law, be regular legal counsel to the Corporation) in a written opinion, or (d) by the stockholders of the Corporation.

The rights provided in this Article (i) shall not be deemed exclusive of any other rights to which an Indemnitee may be entitled under any law, agreement or vote of stockholders or disinterested directors or otherwise, and
(ii) shall inure to the benefit of the heirs, executors and administrators of the Indemnitees. The Corporation may, to the extent authorized from time to time by its Board of Directors, grant indemnification rights to other employees or agents of the Corporation or other persons serving the Corporation and such rights may be equivalent to, or greater or less than, those set forth in this Article.

NINTH: The Corporation reserves the right to amend, alter, change or repeal any provision contained in this Certificate of Incorporation, in the manner now or hereafter prescribed by statute and this Certificate of Incorporation, and all rights conferred upon stockholders herein are granted subject to this reservation.

[SIGNATURE ON FOLLOWING PAGE]

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EXECUTED at Cambridge, Massachusetts, on May 5, 2003.

/s/ John Conley
----------------------------
       John Conley
       Incorporator

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CERTIFICATE OF AMENDMENT

OF

CERTIFICATE OF INCORPORATION

OF

ALNYLAM HOLDING CO.

Pursuant to Section 242
of the General Corporation Law of
the State of Delaware

ALNYLAM HOLDING CO. (the "Corporation"), a corporation organized and existing under and by virtue of the General Corporation Law of the State of Delaware (the "General Corporation Law"), hereby certifies as follows:

The Board of Directors of the Corporation duly adopted, pursuant to Sections 141(f) and 242 of the General Corporation Law of Delaware, resolutions setting forth an amendment to the Certificate of Incorporation of the Corporation and declaring said amendment to be advisable. The Stockholders of the Corporation duly approved said proposed amendment by written consent in accordance with Sections 228 and 242 of the General Corporation Law of Delaware. The resolutions setting forth the amendment are as follows:

RESOLVED: That Article FOURTH of the Certificate of Incorporation be and hereby is deleted in its entirety and the following Article FOURTH is inserted in lieu thereof:

FOURTH: The total number of shares of all classes of stock which the Corporation has authority to issue is 51,911,480 shares, consisting of 32,239,392 shares of Common Stock, par value $.0001 per share (the "Common Stock"), 3,000,010 shares of Series A Convertible Preferred Stock, par value $.0001 per share (the "Series A Preferred Stock"), and 16,672,078 shares of Series B Convertible Preferred Stock, $.0001 par value per share (the "Series B Preferred Stock"). The Series A Preferred Stock and Series B Preferred Stock are sometimes hereinafter collectively referred to as the "Preferred Stock."

The powers, preferences and rights, and the qualifications, limitations or restrictions thereof, in respect of each class or series of stock of the Corporation shall be as follows:

Section 1. Liquidation Rights.

(a) Liquidation Payments.

(i) In the event of any liquidation, dissolution or winding up of the affairs of the Corporation, whether voluntary or involuntary, the holders of the then outstanding shares of Preferred Stock shall be entitled to be paid first out of the assets of the


Corporation available for distribution to holders of the Corporation's capital stock of all classes an amount equal to (a) in the case of the Series A Preferred Stock, $1.00 per share (subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Preferred Stock) and (b) in the case of the Series B Preferred Stock, $2.50 per share (subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Preferred Stock), plus (in the case of all series of Preferred Stock) all dividends declared thereon but unpaid and any and all other amounts owing with respect to such shares, as of and including the date full payment shall be tendered to the holders of the Preferred Stock with respect to such liquidation, dissolution or winding up. Such amount is sometimes hereinafter referred to as the "Preference Amount."

If the assets of the Corporation shall be insufficient to permit the payment in full to the holders of the Preferred Stock of the entire Preference Amount so distributable to them, then the entire assets of the Corporation available for such distribution shall be distributed ratably among the holders of the Preferred Stock in proportion to the full Preference Amount each such holder is otherwise entitled to receive under this Section 1(a)(i).

No payment shall be made with respect to the Common Stock unless and until full payment has been made to the holders of the Preferred Stock of the full Preference Amount.

(ii) After all payments shall have been made in full to the holders of the Preferred Stock as contemplated by Section 1(a)(i) above, or funds necessary for such payments shall have been set aside by the Corporation in trust for the account of holders of Preferred Stock so as to be available for such payments, the remaining assets available for distribution shall be distributed among the holders of the Common Stock ratably in proportion to the number of shares of Common Stock then held by them.

(iii) Upon any such liquidation, dissolution or winding up, any holder of Preferred Stock may elect to receive, in lieu of the Preference Amount otherwise payable to it pursuant to Section 1.1(a)(i), an amount per share of Preferred Stock as would have been payable had such share been converted to Common Stock immediately prior to such liquidation, dissolution or winding up, plus all dividends declared but unpaid on each such share of Preferred Stock to and including the date full payment shall be tendered to the holders of the Preferred Stock with respect to such liquidation, dissolution or winding up.

(iv) Upon conversion of shares of Preferred Stock into shares of Common Stock pursuant to Section 2 below, the holder of such Common Stock shall not be entitled to any preferential payment or distribution in case of any liquidation, dissolution or winding up, but shall share ratably in any distribution of the assets of the Corporation to all the holders of Common Stock.

(v) The amounts payable with respect to shares of Preferred Stock under this Section 1(a) are sometimes hereinafter referred to as "Liquidation Payments."

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(b) Distributions Other than Cash. The amount deemed distributed to the holders of Preferred Stock upon any liquidation, dissolution, or winding-up (including any transaction treated as such pursuant to Section
1(c)), and the value of the consideration received by the Corporation for the issue of any Additional Shares of Common Stock (as defined below), if distributed or received, as the case may be, in any form of property (tangible or intangible) other than cash shall be the fair market value of such property. The term "fair market value" or "fair value" means, with respect to any security, its Market Price (as defined below), and with respect to any property or assets other than cash or securities, the fair value thereof determined in good faith jointly by the Corporation (including the approval of a director nominated by holders of Common Stock) and the Requisite Holders (as defined below); provided, however, that if the parties are not able to agree within a reasonable period of time (not to exceed thirty (30) days) what amount constitutes fair value, then the fair value will be determined pursuant to the Arbitration Procedure (as defined below). The term "Requisite Holders" means the holders of at least two-thirds in voting power of the then outstanding Preferred Stock. The term "Market Price" means, as to any security, the average of the closing prices of such security's sales on all United States securities exchanges on which such security may at the time be listed, or, if there have been no sales on any such exchange on any day, the average of the highest bid and lowest asked prices on all such exchanges at the end of such day, or, if on any day such security is not so listed, the average of the representative bid and asked prices quoted in the NASDAQ System as of 4:00 P.M., New York time, on such day, or, if on any day such security is not quoted in the NASDAQ System, the average of the highest bid and lowest asked prices on such day in the domestic over-the-counter market as reported by the National Quotation Bureau, Incorporated, or any similar or successor organization, in each such case averaged over a period of 30 days consisting of the thirty day period ending three days prior to the date as of which Market Price is being determined. If at any time such security is not listed on any domestic securities exchange or quoted in the NASDAQ System or the domestic over-the-counter market, the Market Price of such security shall be the fair value thereof as determined in good faith jointly by the Corporation (including the approval of a director nominated by holders of Common Stock) and the Requisite Holders; provided, however, that if such parties are not able to agree within a reasonable period of time (not to exceed ten (10) days) what amount constitutes the Market Price, then the Market Price shall be determined pursuant to the Arbitration Procedure. The term "Arbitration Procedure" means the following procedure to determine the fair value or the Market Price, as applicable (the "valuation amount"). The valuation amount shall be determined by an investment banking firm of national recognition, which firm shall be reasonably acceptable to the Corporation and the Requisite Holders. If the Corporation and the Requisite Holders are unable to agree upon an acceptable investment banking firm within ten (10) days after the date either party proposed that one be selected, the investment banking firm will be selected by an arbitrator located in the City of Boston, Massachusetts, selected by the American Arbitration Association (or if such organization ceases to exist, the arbitrator shall be chosen by a court of competent jurisdiction). The arbitrator shall select the investment banking firm (within ten (10) days of his appointment) from a list, jointly prepared by the Corporation and the Requisite Holders, of not more than six investment banking firms of national standing in the United States, of which no more than three may be named by the Corporation and no more than three may be named by the Requisite Holders. The arbitrator may consider, within the ten-day period allotted, arguments from the parties regarding which investment banking firm to choose, but the selection by the

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arbitrator shall be made in its sole discretion from the list of six. The determination of the final valuation amount by such investment banking firm shall be final and binding upon the parties. The Corporation shall pay one-half of the fees and expenses of the investment banking firm and arbitrator (if any) used to determine the valuation amount and the holders of the Preferred Stock shall pay the other half of such fees and expenses (allocated among them pro rata based on the number of shares of Preferred Stock, on an as-converted basis, then held by each of them). If required by any such investment banking firm or arbitrator, the Corporation and the holders of the Preferred Stock shall execute a retainer and engagement letter containing reasonable terms and conditions, including customary provisions concerning the rights of indemnification and contribution by the Corporation and the holders of the Preferred Stock in favor of such investment banking firm or arbitrator and its officers, directors, partners, employees, agents and affiliates.

(c) Merger as Liquidation, etc. The merger or consolidation of the Corporation into or with another corporation (except one in which the holders of capital stock of the Corporation immediately prior to such merger or consolidation continue to hold a majority in voting power of the capital stock of the surviving corporation, in which case the provisions of
Section 2(h) shall apply), or the sale of all or substantially all of the assets of the Corporation, shall be deemed to be a liquidation, dissolution or winding up of the affairs of the Corporation for purposes of this Section 1 with respect to the Preferred Stock, unless the holders of at least two-thirds in voting power of the then outstanding shares of Preferred Stock elect to the contrary; such election to be made by giving notice thereof to the Corporation at least three days before the effective date of such event. If such notice is given with respect to the Preferred Stock, the provisions of Section 2(h) shall apply. Unless such election is made with respect to the Preferred Stock, any amounts received by the holders of Preferred Stock as a result of such merger or consolidation shall be deemed to be applied toward, and all consideration received by the Corporation in such asset sale together with all other available assets of the Corporation shall be distributed toward, the Liquidation Payments.

(d) Notice. In the event the Corporation shall propose to undertake any liquidation, dissolution or winding up of the affairs of the Corporation (including any merger, consolidation or sale of assets which may be deemed to be a liquidation, dissolution or winding up of the affairs of the Corporation under Section 1(c)), the Corporation shall, within ten (10) days after the date the Board of Directors approves such action or twenty (20) days prior to any stockholders' meeting called to approve such action, whichever is earlier, give each holder of Preferred Stock initial written notice of the proposed action. Such initial written notice shall describe the material terms and conditions of such proposed action, including a description of the stock, cash and property to be received by the holders of the Preferred Stock and of Common Stock upon consummation of the proposed action and the proposed date of delivery thereof. If any material change in the facts set forth in the initial notice shall occur, the Corporation shall promptly give each holder of Preferred Stock written notice of such material change. The Corporation shall not consummate any such proposed liquidation, dissolution or winding up before the expiration of thirty (30) days after the mailing of the initial notice or twenty
(20) days after the mailing of any subsequent written notice, whichever is later, provided that any such 30-day or 20-day period may be shortened or waived upon the written consent of the holders of at least two-thirds in voting power of the outstanding shares of Preferred Stock. Any holder of

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outstanding shares of Preferred Stock may waive any notice required by this
Section by a written instrument specifically indicating such waiver.

Section 2. Conversion. The holders of Preferred Stock shall have conversion rights as follows (the "Conversion Rights"):

(a) Right to Convert; Conversion Price. Each share of Preferred Stock shall be convertible, without the payment of any additional consideration by the holder thereof and at the option of the holder thereof, at any time after the date of issuance of such share, at the office of the Corporation or any transfer agent for the Preferred Stock, into such number of fully paid and nonassessable shares of Common Stock as is determined in accordance with the following:

(i) in the case of the Series A Preferred Stock, by dividing $1.00 by the Series A Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series A Preferred Stock without the payment of any additional consideration by the holder thereof (the "Series A Conversion Price") shall initially be $1.00 per share of Common Stock. Such initial Series A Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series A Preferred Stock is convertible, as hereinafter provided.

(ii) in the case of the Series B Preferred Stock, by dividing $2.50 by the Series B Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series B Preferred Stock without the payment of any additional consideration by the holder thereof (the "Series B Conversion Price") shall initially be $2.50 per share of Common Stock. Such initial Series B Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series B Preferred Stock is convertible, as hereinafter provided.

Each of the Series A Conversion Price and the Series B Conversion is sometimes hereinafter referred to as a "Conversion Price."

The right of conversion with respect to any shares of Preferred Stock which shall have been called for redemption under Section 6 hereof shall terminate at the close of business on the day fixed for redemption unless the Corporation shall default in the payment of the redemption price, in which case the right of conversion with respect to such shares shall continue unless and until such redemption price is paid in full.

(b) Automatic Conversion.

(i) Each share of Preferred Stock shall automatically be converted into shares of Common Stock at the applicable Conversion Price then in effect upon the closing of a firm commitment underwritten public offering pursuant to an effective registration statement under the Securities Act of 1933, as amended, covering the offer and sale of Common Stock for the account of the Corporation to the public at an offering price per share

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(prior to underwriters' discounts and commissions) of not less than $7.50 (as adjusted to reflect any stock dividends, distributions, combinations, reclassifications or other like transactions effected by the Corporation in respect of its Common Stock) and with gross proceeds to the Corporation of not less than $25,000,000 (a "Qualified Public Offering"), in the event of which offering the person(s) entitled to receive the Common Stock issuable upon such conversion of the Preferred Stock shall not be deemed to have converted such Preferred Stock until the closing of such offering.

(ii) Each share of Preferred Stock shall automatically be converted into shares of Common Stock at the applicable Conversion Price then in effect upon the written election of the holders of not less than two-thirds in voting power of the then outstanding shares of Preferred Stock to require such mandatory conversion.

(c) Mechanics of Automatic Conversions. Upon the occurrence of an event specified in Section 2(b), the Preferred Stock of the applicable series shall be converted automatically without any further action by the holders of such shares and whether or not the certificates representing such shares are surrendered to the Corporation or its transfer agent; provided, however, that all holders of shares of Preferred Stock being converted shall be given written notice of the occurrence of the event specified in Section 2(b) triggering such conversion, including the date such event occurred (the "Mandatory Conversion Date"), and the Corporation shall not be obligated to issue certificates evidencing the shares of Common Stock issuable upon such conversion unless certificates evidencing such shares of Preferred Stock being converted are either delivered to the Corporation or its transfer agent, or the holder notifies the Corporation or any transfer agent that such certificates have been lost, stolen, or destroyed and executes an agreement satisfactory to the Corporation (which agreement will not require a bond) to indemnify the Corporation from any loss incurred by it in connection therewith. On the Mandatory Conversion Date, all rights with respect to the Preferred Stock so converted shall terminate, except any of the rights of the holder thereof, upon surrender of the holder's certificate or certificates therefor, to receive certificates for the number of shares of Common Stock into which such Preferred Stock has been converted, together with cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock converted to and including the time of conversion. Upon the automatic conversion of the Preferred Stock, the holders of such Preferred Stock shall surrender the certificates representing such shares at the office of the Corporation or of its transfer agent. If so required by the Corporation, certificates surrendered for conversion shall be endorsed or accompanied by written instrument or instruments of transfer, in form satisfactory to the Corporation, duly executed by the registered holder or by the holder's attorney duly authorized in writing. Upon surrender of such certificates there shall be issued and delivered to such holder, or to such holder's nominee or nominees promptly at such office, a certificate or certificates for the number of shares of Common Stock into which the shares of Preferred Stock surrendered were convertible on the date on which such automatic conversion occurred, together with cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock converted to and including the time of conversion. Upon the automatic conversion of the Preferred Stock, all shares of Preferred Stock being converted by any holder thereof shall be aggregated for the purpose of determining the number of shares of Common Stock to which such holder shall be entitled, and no fractional share of

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Common Stock shall be issued. In lieu of any fractional share to which the holder would otherwise be entitled, the Corporation shall pay cash equal to such fraction multiplied by the fair market value of the Common Stock on the Mandatory Conversion Date, as reasonably determined by the Board of Directors in good faith (notwithstanding the provisions of Section 1(b)).

(d) Mechanics of Optional Conversions. Before any holder of Preferred Stock shall be entitled to convert the same into shares of Common Stock, the holder shall surrender the certificate or certificates therefor at the office of the Corporation or of any transfer agent for the Preferred Stock, and shall give written notice to the Corporation at such office that the holder elects to convert the same and shall state therein the holder's name or the name or names of the holder's nominees in which the holder wishes the certificate or certificates for shares of Common Stock to be issued. On the date of conversion, all rights with respect to the Preferred Stock so converted shall terminate, except any of the rights of the holder thereof, upon surrender of the holder's certificate or certificates therefor, to receive certificates for the number of shares of Common Stock into which such Preferred Stock has been converted and cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock being converted to and including the time of conversion. If so required by the Corporation, certificates surrendered for conversion shall be endorsed or accompanied by written instrument or instruments of transfer, in form satisfactory to the Corporation, duly executed by the registered holder or by the holder's attorney duly authorized in writing. Upon the optional conversion of the Preferred Stock of any series, all shares of Preferred Stock being converted by any holder thereof shall be aggregated for the purpose of determining the number of shares of Common Stock to which such holder shall be entitled, and no fractional share of Common Stock shall be issued. In lieu of any fractional share to which the holder would otherwise be entitled, the Corporation shall pay cash equal to such fraction multiplied by the fair market value of the Common Stock on the date of conversion, as reasonably determined by the Board of Directors in good faith (notwithstanding the provisions of Section
1(b)). The Corporation shall, promptly after surrender of the certificate or certificates for conversion, issue and deliver at such office to such holder of Preferred Stock, or to the holder's nominee or nominees, a certificate or certificates for the number of shares of Common Stock to which the holder shall be entitled as aforesaid, together with cash in lieu of any fraction of a share and cash in an amount equal to all dividends declared but unpaid thereon and any and all other amounts owing with respect thereto at such time. Unless otherwise specified by the holder in the written notice of conversion, such conversion shall be deemed to have been made immediately prior to the close of business on the date of such surrender of the shares of Preferred Stock to be converted, and the person or persons entitled to receive the shares of Common Stock issuable upon conversion shall be treated for all purposes as the record holder or holders of such shares of Common Stock on such date.

(e) Adjustments to Conversion Price for Diluting Issues.

(i) Special Definitions. For purposes of this
Section 2(e), the following definitions shall apply:

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(1) "Option" shall mean rights, options or warrants to subscribe for, purchase or otherwise acquire either Common Stock or Convertible Securities.

(2) "Original Issue Date" shall mean with respect to any series of Preferred Stock the first date on which a share of Preferred Stock of such series was issued.

(3) "Convertible Securities" shall mean any evidences of indebtedness, shares of capital stock (other than Common Stock) or other securities directly or indirectly convertible into or exchangeable for Common Stock.

(4) "Additional Shares of Common Stock" shall mean all shares of Common Stock issued (or, pursuant to Section 2(e)(iii), deemed to be issued) by the Corporation after the Original Issue Date, other than:

(A) shares of Common Stock issued or issuable upon conversion of shares of Preferred Stock;

(B) up to 3,250,000 shares of Common Stock issued or issuable to employees, consultants or directors of the Corporation pursuant to a stock purchase or stock option plan or other employee stock bonus arrangement approved by a majority of the Corporation's Board of Directors, which majority includes at least two of the Preferred Stock Directors (as hereinafter defined) (such vote, a "Majority Directors Vote"); and provided that such number may be adjusted upward by a Majority Directors Vote;

(C) securities issued in connection with capital leases, bank financing or other similar transactions with a non-equity financing purpose, in each case as approved by a Majority Directors Vote;

(D) securities issued in connection with licensing or strategic alliance transactions, in each case as approved by a Majority Directors Vote;

(E) securities issued pursuant to the acquisition of another corporation or other entity by the Corporation by merger, purchase of substantially all of the assets, or other reorganization whereby the Corporation acquires not less than 51% of the voting power of such corporation or other entity in a transaction approved by a Majority Directors Vote;

(F) up to 1,000,000 shares of Series A Preferred Stock issued or issuable at a price not less than $1.00 per share pursuant to a Series A and Series B Convertible Preferred Stock Purchase Agreement to be entered into, and performed by, the Corporation with certain existing investors of the Corporation and Abingworth Management Limited;

(G) shares of Common Stock issued or issuable at any time to holders of capital stock of Ribopharma AG ("Ribopharma") pursuant to the Share

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Exchange Agreement dated July 3, 2003 among the Corporation, Alnylam Pharmaceuticals, Inc. ("Alnylam"), Ribopharma and the stockholders of Ribopharma (the "Share Exchange Agreement");

(H) up to 898,173 shares of Series B Preferred Stock issued to Garching Innovation GmbH ("Garching"), Massachusetts Institute of Technology ("MIT"), Whitehead Institute for Biomedical Research ("Whitehead Institute") and Max-Planck-Gesellschaft zur Foerderung der Wissenschaften e.V ("Max-Planck") pursuant to license agreements between such entities and Alnylam;

(I) shares of capital stock of the Corporation issued to University of Massachusetts Medical School ("UMASS") pursuant to license agreements between the Corporation and UMASS, in each case as approved by a Majority Directors Vote;

(J) shares of Common Stock issued in connection with a Qualified Public Offering; and

(K) up to 94,044 shares of Common Stock issued to Abingworth Bioventures III A LP, Abingworth Bioventures III B LP, Abingworth Bioventures III C LP and Abingworth Bioventures III Executives LP (the "Lenders") pursuant to Section 8.2 of the Loan Agreement, dated April 4, 2003, between the Lenders and Ribopharma and the Assignment of Loan among Ribopharma, the Corporation and the Lenders dated on or about the date hereof.

(ii) No Adjustment of Conversion Price. Except as set forth in Section 2(e)(vi), no adjustment in the number of shares of Common Stock into which any series of Preferred Stock is convertible shall be made, by adjustment in the applicable Conversion Price for such series in respect of the issuance of Additional Shares of Common Stock, (a) unless the consideration per share for an Additional Share of Common Stock (determined pursuant to Section
2(e)(v)) issued or deemed to be issued by the Corporation is less than the applicable Conversion Price for such series in effect on the date of, and immediately prior to, the issue of such Additional Shares of Common Stock or (b) if prior to such issuance or within twenty (20) days thereafter the Corporation receives notice from the holders of at least two-thirds of the outstanding shares of such series of Preferred Stock that no such adjustment in the Conversion Price for such series shall be made.

(iii) Issue of Securities Deemed Issue of Additional Shares of Common Stock

(1) Options and Convertible Securities. In the event the Corporation at any time or from time to time after the Original Issue Date for any series of Preferred Stock shall issue any Options (excluding for all purposes of this Section 2(e)(iii)(1) Options excluded from the definition of Additional Shares of Common Stock in Section 2(e)(i)(4)(B)) or Convertible Securities or shall fix a record date for the determination of holders of any class of securities entitled to receive any such Options or Convertible Securities, then the

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maximum number of shares (as set forth in the instrument relating thereto without regard to any provisions contained therein for a subsequent adjustment of such number) of Common Stock issuable upon the exercise of such Options or, in the case of Convertible Securities and Options therefor, the conversion or exchange of such Convertible Securities, shall be deemed to be Additional Shares of Common Stock issued as of the time of such issue or, in case such a record date shall have been fixed, as of the close of business on such record date, and the Conversion Price of any such series of Preferred Stock shall be adjusted accordingly, provided that in any such case in which Additional Shares of Common Stock are deemed to be issued:

(A) no further adjustment in the Conversion Price of any such series of Preferred Stock shall be made upon the subsequent issue of Convertible Securities or shares of Common Stock upon the exercise of such Options or conversion or exchange of such Convertible Securities;

(B) if such Options or Convertible Securities by their terms provide, with the passage of time or otherwise, for any increase in the consideration payable to the Corporation, or decrease in the number of shares of Common Stock issuable, upon the exercise, conversion or exchange thereof, the Conversion Price of any such series of Preferred Stock computed upon the original issue thereof (or upon the occurrence of a record date with respect thereto), and any subsequent adjustments based thereon, shall, upon any such increase or decrease becoming effective, be recomputed to reflect such increase or decrease insofar as it affects such Options or the rights of conversion or exchange under such Convertible Securities;

(C) upon the expiration of any such Options or any rights of conversion or exchange under such Convertible Securities which shall not have been exercised, the Conversion Price of any such series of Preferred Stock computed upon the original issue thereof (or upon the occurrence of a record date with respect thereto), and any subsequent adjustments based thereon, shall, upon such expiration, be recomputed as if:

(I) In the case of Convertible Securities or Options for Common Stock the only Additional Shares of Common Stock issued were the shares of Common Stock, if any, actually issued upon the exercise of such Options or the conversion or exchange of such Convertible Securities and the consideration received therefor was the consideration actually received by the Corporation for the issue of all such Options, whether or not exercised, plus the consideration actually received by the Corporation upon such exercise, or for the issue of all such Convertible Securities which were actually converted or exchanged, plus the additional consideration, if any, actually received by the Corporation upon such conversion or exchange; and

(II) in the case of Options for Convertible Securities only the Convertible Securities, if any, actually issued upon the exercise thereof were issued at the time of issue of such Options, and the consideration received by the Corporation for the Additional Shares of Common Stock deemed to have been then issued was the consideration actually received by the Corporation for the issue of all such Options, whether or not exercised, plus the consideration deemed to have been

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received by the Corporation (determined pursuant to Section 2(e)(v)) upon the issue of the Convertible Securities with respect to which such Options were actually exercised;

(D) no readjustment pursuant to clause (B) or (C) above shall have the effect of increasing the Conversion Price of any such series of Preferred Stock to an amount which exceeds the lower of (i) the Conversion Price of any such series of Preferred Stock immediately prior to adjustment on the original adjustment date, or (ii) the Conversion Price of any such series of Preferred Stock that would have resulted from any issuance of Additional Shares of Common Stock between the original adjustment date and such readjustment date;

(E) if such record date shall have been fixed and such Options or Convertible Securities are not issued on the date fixed therefor, the adjustment previously made in the Conversion Price of any such series of Preferred Stock which became effective on such record date shall be canceled as of the close of business on such record date, and thereafter the Conversion Price of any such series of Preferred Stock shall be adjusted pursuant to this Section 2(e)(iii) as of the actual date of their issuance.

(2) Stock Dividends, Stock Distributions and Subdivisions. In the event the Corporation at any time or from time to time after the Original Issue Date for any series of Preferred Stock shall declare or pay any dividend or make any other distribution on the Common Stock payable in Common Stock or effect a subdivision of the outstanding shares of Common Stock (by reclassification or otherwise than by payment of a dividend in Common Stock), then and in any such event, Additional Shares of Common Stock shall be deemed to have been issued with respect to such series of Preferred Stock:

(A) in the case of any such dividend or distribution, immediately after the close of business on the record date for the determination of holders of any class of securities entitled to receive such dividend or distribution, or

(B) in the case of any such subdivision, at the close of business on the date immediately prior to the date upon which such corporate action becomes effective.

If such record date shall have been fixed and no part of such dividend or distribution shall have been paid on the date fixed therefor, the adjustment previously made in the Conversion Price of any such series of Preferred Stock which became effective on such record date shall be canceled as of the close of business on such record date, and thereafter the Conversion Price of such series of Preferred Stock shall be adjusted pursuant to this Section 2(e)(iii) as of the time of actual payment of such dividend or distribution.

(iv) Adjustment of Conversion Price Upon Issuance of Additional Shares of Common Stock. In the event that at any time or from time to time after the Original Issue Date for the Series A Preferred Stock or Series B Preferred Stock the Corporation shall issue Additional Shares of Common Stock (including, without limitation, Additional Shares of Common Stock deemed to be issued pursuant to Section 2(e)(iii)(1) but excluding Additional

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Shares of Common Stock deemed to be issued pursuant to Section 2(e)(iii)(2), which event is dealt with in Section 2(e)(vi)(1)), without consideration or for a consideration per share less than the Series A Conversion Price or the Series B Conversion Price in effect on the date of and immediately prior to such issue, then and in such event, such Series A Conversion Price or Series B Conversion Price, as the case may be, shall be reduced, concurrently with such issue, to a price (calculated to the nearest one tenth of one cent) determined in accordance with the following formula:

(P(1)) (Q(1)) + (P(2)) (Q(2))

NCP = -----------------------------
Q(1) + Q(2)

where:

         NCP  =   New Series A Conversion Price or Series B Conversion
                  Price, as applicable;

         P(1) =   Series A Conversion Price or Series B Conversion
                  Price, as applicable, in effect immediately prior to
                  new issue;

         Q(1) =   Number of shares of Common Stock outstanding, or
                  deemed to be outstanding as set forth below,
                  immediately prior to such issue;

         P(2) =   Price per share received by the Corporation upon
                  such issue;

         Q(2) =   Number of shares of Common Stock issued, or deemed
                  to have been issued, in the subject transaction;

provided that for the purpose of this Section 2(e)(iv), all shares of Common Stock issuable upon conversion or exercise of Options or Convertible Securities (including without limitation shares of Preferred Stock) outstanding immediately prior to such issue shall be deemed to be outstanding, and immediately after any Additional Shares of Common Stock are deemed issued pursuant to Section
2(e)(iii), such Additional Shares of Common Stock shall be deemed to be outstanding.

(v) Determination of Consideration. For purposes of this Section 2(e), the consideration received by the Corporation for the issue of any Additional Shares of Common Stock shall be computed as follows:

(1) Cash and Property: Such consideration shall:

(A) insofar as it consists of cash, be computed at the aggregate amounts of cash received by the Corporation excluding amounts paid or payable for accrued interest or accrued dividends;

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(B) insofar as it consists of property other than cash, be computed at the fair value thereof at the time of such issue, as determined in accordance with Section 1(b); and

(C) in the event Additional Shares of Common Stock are issued together with other shares or securities or other assets of the Corporation for consideration which covers both, be the proportion of such consideration so received, computed as provided in clauses (A) and (B) above, as determined in good faith by the Board of Directors.

(2) Options and Convertible Securities. The consideration per share received by the Corporation for Additional Shares of Common Stock deemed to have been issued pursuant to Section 2(e)(iii)(1), relating to Options and Convertible Securities, shall be determined by dividing
(x) the total amount, if any, received or receivable by the Corporation as consideration for the issue of such Options or Convertible Securities, plus the minimum aggregate amount of additional consideration (as set forth in the instruments relating thereto, without regard to any provision contained therein for a subsequent adjustment of such consideration) payable to the Corporation upon the exercise of such Options or the conversion or exchange of such Convertible Securities, or in the case of Options for Convertible Securities, the exercise of such Options for Convertible Securities and the conversion or exchange of such Convertible Securities, by (y) the maximum number of shares of Common Stock (as set forth in the instruments relating thereto, without regard to any provision contained therein for a subsequent adjustment of such number) issuable upon the exercise of such Options or the conversion or exchange of such Convertible Securities.

(vi) Adjustment for Dividends, Distributions, Subdivisions, Combinations or Consolidations of Common Stock.

(1) Stock Dividends, Distributions or Subdivisions. In the event the Corporation shall be deemed to issue Additional Shares of Common Stock pursuant to Section 2(e)(iii)(2) in a stock dividend, stock distribution or subdivision, the Conversion Price of each series of Preferred Stock in effect immediately before such deemed issuance shall, concurrently with the effectiveness of such deemed issuance, be proportionately decreased.

(2) Combinations or Consolidations. In the event the outstanding shares of Common Stock shall be combined or consolidated, by reclassification or otherwise, into a lesser number of shares of Common Stock, the Conversion Price of each series of Preferred Stock in effect immediately prior to such combination or consolidation shall, concurrently with the effectiveness of such combination or consolidation, be proportionately increased.

(f) Adjustments for Certain Dividends and Distributions. In the event that at any time or from time to time after the Original Issue Date for any series of Preferred Stock the Corporation shall make or issue, or fix a record date for the determination of holders of Common Stock entitled to receive, a dividend or other distribution payable in securities of the Corporation other than shares of Common Stock or securities the issuance of which are deemed to be issuances of Common Stock under Section 2(e)(iii), then and in each such event provision

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shall be made so that the holders of Preferred Stock of such series shall receive upon conversion thereof in addition to the number of shares of Common Stock receivable thereupon, the amount of securities of the Corporation that they would have received had their Preferred Stock been converted into Common Stock immediately prior to such event and had they thereafter, during the period from the date of such event to and including the conversion date, retained such securities receivable by them as aforesaid during such period, giving application during such period to all adjustments called for herein.

(g) Adjustment for Reclassification, Exchange, or Substitution. In the event that at any time or from time to time after the Original Issue Date for any series of Preferred Stock, the Common Stock issuable upon the conversion of such series of Preferred Stock shall be changed into the same or a different number of shares of any class or series of stock or other securities or property, whether by capital reorganization, reclassification, recapitalization or otherwise (other than a subdivision or combination of shares or stock dividend provided for above, or a merger, consolidation, or sale of assets provided for below), then and in each such event the holder of any shares of such series of Preferred Stock shall have the right thereafter to convert such shares into the kind and amount of shares of stock and other securities and property receivable upon such reorganization, reclassification, recapitalization or other change by the holder of a number of shares of Common Stock equal to the number of shares of Common Stock into which such shares of such series of Preferred Stock might have been converted immediately prior to such reorganization, reclassification, recapitalization or change, all subject to further adjustment as provided herein.

(h) Adjustment for Merger, Consolidation or Sale of Assets. In the event that at any time or from time to time the Corporation shall merge or consolidate with or into another entity or sell all or substantially all of its assets, and such consolidation, merger or sale is not treated as a liquidation under Section 1(c), each share of Preferred Stock shall thereafter be convertible into the kind and amount of shares of stock or other securities or property to which a holder of the number of shares of Common Stock of the Corporation deliverable upon conversion of such Preferred Stock would have been entitled to receive upon such consolidation, merger or sale; and, in such case, appropriate adjustment (as determined in good faith by the Board of Directors) shall be made in the application of the provisions set forth in this Section 2 with respect to the rights and interest thereafter of the holders of shares of such Preferred Stock, to the end that the provisions set forth in this Section 2 (including provisions with respect to changes in and other adjustments of the Conversion Prices) shall thereafter be applicable, as nearly as reasonably may be, in relation to any shares of stock or other securities or property thereafter deliverable upon the conversion of such Preferred Stock.

(i) Special Mandatory Conversion.

(i) Mandatory Conversion Upon Failure to Participate in Equity Financing.

(1) When any holder of shares of Series A Preferred Stock is entitled to exercise its right of first refusal (the "Right of First Refusal") as set forth in Section 3 of that certain Investor Rights Agreement, dated on or about the date hereof, by and

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among the Corporation and certain of its stockholders (the "Rights Agreement") with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series A Conversion Price in effect immediately prior to such issue or sale (a "Series A Dilutive Issuance") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 3 of the Rights Agreement in respect thereof and (y) the provisions of the Right of First Refusal applicable to the particular Series A Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not, by exercise of such holder's Right of First Refusal, acquire at least such holder's Basic Amount (as defined in and calculated in accordance with Section 3.1 of the Rights Agreement) of New Securities (as defined in Section 3.2 of the Rights Agreement) in such Series A Dilutive Issuance, then each Non-Participating Series A Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series A Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series A Dilutive Issuance, at the Series A Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series A Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(1) shall be deemed to have waived with respect to each Non-Participating Series A Share (A) the reduction in the Series A Conversion Price of such Non-Participating Series A Share that would have otherwise resulted pursuant to Section 2(e) from such Series A Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series A Share pursuant to this Section 2(i)(i)(1), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "Non-Participating Series A Shares" shall mean such number of shares of Series A Preferred Stock of a holder that is determined by multiplying the total number of shares of Series A Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(2) When any holder of shares of Series B Preferred Stock is entitled to exercise its Right of First Refusal as set forth in Section 3 of the Rights Agreement with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series B Conversion Price in effect immediately prior to such issue or sale (a "Series B Dilutive Issuance") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 3 of the Rights Agreement in respect thereof and (y) the provisions of the Right of First Refusal applicable to the particular Series B Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not by exercise of such holder's Right of First Refusal, acquire at least such holder's Basic Amount of New Securities in such Series B Dilutive Issuance, then each Non-Participating Series B Share (as defined below) held by such holder shall automatically and without further action on the part of

- 15 -

such holder be converted, effective subject to and concurrently with consummation of the Series B Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series B dilutive Issuance, at the Series B Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series B Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(2) shall be deemed to have waived with respect to each Non-Participating Series B Share (A) the reduction in the Series B Conversion Price of such Non-Participating Series B Share that would have otherwise resulted pursuant to Section 2(e) from such Series B Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series B Share pursuant to this Section 2(i)(i)(2), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "Non-Participating Series B Shares" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B Dilutive Issuance minus the number of new Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series B Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(ii) Notwithstanding the foregoing, in the event that the Corporation issues equity securities in a transaction that is both a Series A Dilutive Issuance and a Series B Dilutive Issuance (the "Series A/B Dilutive Issuance") and a holder of both Series A Preferred Stock and Series B Preferred Stock does not acquire at least such holder's Basic Amount of New Securities, then the shares of Preferred Stock of such holder that shall be converted into shares of Common Stock in accordance with this Section 2(i) shall be allocated pro rata to such holder's Series A Preferred Stock and Series B Preferred Stock. For purposes of clarity, in the event of a Series A/B Dilutive Issuance, (A) the term "Non-Participating Series A Shares" shall mean such number of shares of Series A Preferred Stock of a holder that is determined by multiplying the total number of shares of Series A Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B Dilutive Issuance minus the number of new Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B Dilutive Issuance, and the denominator of which is such holder's Basic Amount and (B) the term "Non-Participating Series B Shares" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B Dilutive Issuance minus the number of new Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(iii) Mechanics of Special Mandatory Conversion. The holder of any shares of Series A Preferred Stock or Series B Preferred Stock converted pursuant to this Section 2(i) shall surrender the certificate or certificates of such shares, duly endorsed for transfer or with duly executed stock transfer powers sufficient to permit transfers attached, at the office of the Corporation or any transfer agent for such Preferred Stock (or such holder shall notify the Corporation or any transfer agent that such certificates have been lost, stolen or destroyed and shall execute an agreement reasonably satisfactory to the Corporation (which

- 16 -

agreement will not require a bond) to indemnify the Corporation from any loss incurred by it in connection therewith). The Corporation shall, as soon as practicable thereafter, issue and deliver at such office to such holder of Preferred Stock, or to such holder's nominee or nominees, a certificate or certificates for the number of full shares of Common Stock to which such holder shall be entitled as aforesaid. Such conversion shall be deemed to have been made immediately prior to the consummation of the Series A Dilutive Issuance or Series B Dilutive Issuance, as the case may be, unless the transfer books of the Corporation are closed on that date, in which event such holder shall be deemed to have become a holder of record of Common Stock on the next succeeding date on which the transfer books are open.

(j) No Impairment. The Corporation shall not, by amendment of its Certificate of Incorporation or through any reorganization, transfer of assets, consolidation, merger, dissolution, issue or sale of securities or any other voluntary action, avoid or seek to avoid the observance or performance of any of the terms to be observed or performed hereunder by the Corporation but shall at all times in good faith assist in the carrying out of all the provisions of this Section 2 and in the taking of all such action as may be necessary or appropriate in order to protect the Conversion Rights of the holders of Preferred Stock against impairment.

(k) Certificate as to Adjustments. Upon the occurrence of each adjustment or readjustment of the Conversion Price for a particular series of Preferred Stock pursuant to this Section 2, the Corporation at its expense shall promptly compute such adjustment or readjustment in accordance with the terms hereof and furnish to each holder of shares of such series of Preferred Stock a certificate setting forth such adjustment or readjustment and showing in detail the facts upon which such adjustment or readjustment is based. The Corporation shall, upon the written request at any time of any holder of shares of a particular series of Preferred Stock, furnish or cause to be furnished to such holder a like certificate setting forth (i) such adjustments and readjustments, (ii) the Conversion Price for such series at the time in effect, and (iii) the number of shares of Common Stock and the amount, if any, of other property which at the time would be received upon the conversion of each share of such series of Preferred Stock.

(l) Notices of Record Date. In the event of any taking by the Corporation of a record of the holders of any class or series of securities for the purpose of determining the holders thereof who are entitled to receive any dividend or other distribution, the Corporation shall mail to each holder of Preferred Stock at least ten (10) days prior to such record date a notice specifying the date on which any such record is to be taken for the purpose of such dividend or distribution.

(m) Common Stock Reserved. The Corporation shall reserve and keep available, free from pre-emptive rights, out of its authorized but unissued Common Stock, solely for the purpose of effecting the conversion of Preferred Stock, such number of shares of Common Stock as shall from time to time be sufficient to effect conversion of the Preferred Stock. If at any time the number of authorized but unissued shares of Common Stock shall not be sufficient to effect the conversion of all the then outstanding shares of Preferred Stock, the Corporation shall promptly take such corporate action as may, in the opinion of its counsel, be

- 17 -

necessary to increase its authorized but unissued shares of Common Stock to such number of shares as shall be sufficient for such purpose.

(n) Certain Taxes. The Corporation shall pay any issue or transfer taxes payable in connection with the conversion of Preferred Stock, provided, however, that the Corporation shall not be required to pay any tax which may be payable in respect of any transfer to a name other than that of the holder of the Preferred Stock.

(o) Closing of Books. The Corporation shall at no time close its transfer books against the transfer of any Preferred Stock or of any shares of Common Stock issued or issuable upon the conversion of any shares of Preferred Stock in any manner which interferes with the timely conversion or transfer of such Preferred Stock or Common Stock.

(p) Validity of Shares. The Corporation agrees that it will from time to time take all such actions as may be required to assure that all shares of Common Stock which may be issued upon conversion of any Preferred Stock will, upon issuance, be legally and validly issued, fully paid and nonassessable and free from all taxes, liens and charges with respect to the issue thereof.

Section 3. Restrictions.

(a) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 60% in voting power of the then outstanding shares of Series A Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series A Preferred Stock;

(ii) amend or repeal any provision of, or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any corporation or other entity in which it holds, directly or indirectly, an equity interest representing more than 50% of the voting power of all outstanding capital stock of such entity (any such entity, a "Subsidiary") to amend or repeal any provision of or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-Laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series A Preferred Stock or increase or decrease the number of authorized shares of Series A Preferred Stock;

(iii) authorize or designate any class or series of capital stock having rights senior to or on a parity with either the Series A Preferred Stock as to dividends, liquidation or otherwise.

(b) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 66 2/3% in voting power of the then outstanding shares of Series B Preferred Stock, the Corporation will not:

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(i) amend the preferences, rights or privileges of the Series B Preferred Stock;

(ii) amend or repeal any provision of or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any Subsidiary to amend or repeal any provision of, or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series B Preferred Stock or increase or decrease the number of authorized shares of Series B Preferred Stock;

(iii) authorize or designate any class or series of capital stock having rights senior to or on a parity with either the Series B Preferred Stock as to dividends, liquidation or otherwise.

(c) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 662/3% in voting power of the then outstanding shares of all series of Preferred Stock, voting together as a single class, the Corporation will not:

(i) pay or declare any dividend or distribution on any shares of its capital stock (except dividends payable solely in shares of Common Stock), or apply any of its assets to the redemption, retirement, purchase or acquisition, directly or indirectly, through subsidiaries or otherwise, of any shares of the Corporation's capital stock except (a) as expressly set forth herein or (b) for repurchases of Common Stock upon termination of employment or service pursuant to written agreements in effect on the date hereof or written agreements approved by the Corporation's Board of Directors or a committee thereof);

(ii) sell, lease or otherwise dispose of all or substantially all of the assets of the Corporation, or permit any Subsidiary to sell, lease or otherwise dispose of all or substantially all of the assets of such Subsidiary;

(iii) voluntarily liquidate or dissolve or permit any Subsidiary to voluntarily liquidate or dissolve;

(iv) enter into any merger, consolidation or capital reorganization, or permit any Subsidiary to enter into any merger, consolidation or capital reorganization, except as contemplated by the Share Exchange Agreement;

(v) effect any acquisition of the capital stock of another entity that results in the consolidation of that entity into the results of operations of the Corporation, except as contemplated by the Share Exchange Agreement;

(vi) increase the number of seats on the Board of Directors above nine;

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(vii) acquire all or substantially all of the assets of another entity, except as contemplated by the Share Exchange Agreement;

(viii) incur indebtedness for borrowed funds, in a single or related series of transactions, in principal amount at any time outstanding in excess of $500,000 (except in connection with the transactions contemplated by the Share Exchange Agreement, including the assumption of indebtedness owed by Ribopharma to Abingworth Bioventures III A LP, Abingworth Bioventures III B LP, Abingworth Bioventures III C LP and Abingworth Bioventures Executives LP.)

(ix) create a new plan or arrangement for the grant of stock options, stock appreciation rights, restricted stock or other similar stock-based compensation, or increase the number of shares or other rights available under such existing plan or arrangement, except for increases in the number of shares approved in the manner provided in Section
2(e)(i)(4)(B); or

(x) any provision of the By-Laws of the Corporation to the contrary notwithstanding, increase the number of directors constituting the entire Board of Directors, except as necessary to add independent outside directors whose election is subject to the approval of all of the Preferred Stock Directors then in office (as defined below).

(d) Notwithstanding any other provision of this Certificate of Incorporation or the Corporation's By-Laws to the contrary, written notice of any action specified in Section 3(a), 3(b) or 3(c) shall be given by the Corporation to each holder of outstanding shares of Preferred Stock at least twenty (20) days before the date on which the books of the Corporation shall close or a record shall be taken with respect to such proposed action, or, if there shall be no such date, at least twenty (20) days before the date when such proposed action is scheduled to take place. Any holder of outstanding shares of Preferred Stock may waive any notice required by this Section by a written document specifically indicating such waiver, and the holders of two-thirds in voting power of all series of Preferred Stock, voting together as a single class, may waive any such notice on behalf of all holders of the Preferred Stock.

Section 4. Voting Rights.

(a) Except as otherwise required by law or set forth in this Certificate of Incorporation, the holders of Preferred Stock shall be entitled to notice of any meeting of stockholders and shall vote together with the holders of Common Stock as a single class upon any matter submitted to the stockholders for a vote. With respect to all questions as to which, under law, stockholders are required to vote by classes or series, the Preferred Stock shall vote separately as a single class and series apart from the Common Stock. Shares of Common Stock and Preferred Stock shall entitle the holders thereof to the following number of votes on any matter as to which they are entitled to vote:

(i) Holders of Common Stock shall have one vote per share; and

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(ii) Holders of Preferred Stock shall have that number of votes per share as is equal to the number of shares of Common Stock (including fractions of a share) into which each such share of Preferred Stock held by such holder could be converted on the date for determination of stockholders entitled to vote at the meeting or on the date of any written consent.

(b) Except as contemplated by the Rights Agreement, the Board of Directors shall not delegate any of its powers or duties to any committee of the Board of Directors without the consent of all of the Preferred Stock Directors then in office.

(c) In addition to any other vote required by law or by this Certificate of Incorporation, the Corporation shall not amend this Certificate of Incorporation, whether by merger, consolidation or otherwise, so as to amend, alter or repeal the powers, preferences or special rights of the Preferred Stock in a manner that affects them adversely, without the written consent or affirmative vote of the holders of a majority of the then outstanding shares of Preferred Stock, given in writing or by vote at a meeting, consenting or voting (as the case may be) separately as a class.

(d) At all times during which the number of outstanding shares of Series A Preferred Stock equals or exceeds 1,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Series A Preferred Stock shall have the exclusive right, separately from the Common Stock and the other series of Preferred Stock, to elect two directors of the Corporation. Any such director is sometimes hereinafter referred to as a "Series A Preferred Stock Director." At all times during which the number of outstanding shares of Series B Preferred Stock equals or exceeds 1,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Series B Preferred Stock shall have the exclusive right, separately from the Common Stock and the other series of Preferred Stock, to elect one director of the Corporation. Such director is sometimes hereinafter referred to as a "Series B Preferred Stock Director." At all times during which the number of outstanding shares of Preferred Stock equals or exceeds 2,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Preferred Stock, voting together as a single class, shall have the exclusive right, separately from the Common Stock, to elect one director of the Corporation. Such director is sometimes hereinafter referred to as a "Series A/B Preferred Stock Director" and each of the Series A Preferred Stock Directors, the Series B Preferred Stock Director and the Series A/B Director is sometimes hereinafter referred to as a "Preferred Stock Director." Each Preferred Stock Director shall be elected by the vote or written consent of the holders of a plurality in voting power of the series of Preferred Stock entitled to elect such Preferred Stock Director. If a Preferred Stock Director shall cease to serve as a director for any reason, another director elected by the holders of the series of Preferred Stock entitled to elect such Preferred Stock Director shall replace such director. Any Preferred Stock Director may be removed, with or without cause, and a replacement Preferred Stock Director may be elected in his stead, at any time by the

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affirmative vote at a meeting duly called for the purpose, or by written consent, of the holders of a plurality in voting power of the outstanding series of Preferred Stock entitled to elect such director.

(e) At all times during which shares of Common Stock remain outstanding, the holders of the outstanding shares of Common Stock shall have the exclusive right, separately from the Preferred Stock, to elect two directors of the Corporation (the "Common Stock Directors"). Each Common Stock Director shall be elected by the vote or written consent of the holders of a plurality in voting power of the outstanding Common Stock. If a Common Stock Director shall cease to serve as a director for any reason, another director elected by the holders of the Common Stock shall replace such director. Any Common Stock Director may be removed, with or without cause, and a replacement Common Stock Director may be elected in his stead, at any time by the affirmative vote at a meeting duly called for the purpose, or by written consent, of the holders of a plurality in voting power of the outstanding Common Stock.

(f) All other directors of the Corporation shall be elected by the holders of the Common Stock and Preferred Stock voting together as a single class, with the holders of Preferred Stock to have that number of votes as is determined in accordance with Section 4(a)(ii).

(g) In addition to any rights which may be available under the Corporation's By-Laws or otherwise under law, the holders of not less than twenty percent (20%) in voting power of the outstanding Preferred Stock shall be entitled to call meetings of the stockholders of the Corporation. Within five (5) business days after written application by the holders of not less than twenty percent (20%) in voting power of the outstanding Preferred Stock, the President or Secretary, or such other officer of the Corporation as may be authorized in the By-Laws of the Corporation to give notice of meetings of stockholders of the Corporation, shall notify each stockholder of the Corporation entitled to such notice of the date, time, place and purpose of such meeting.

Section 5. Dividends.

(a) Dividends may be declared and paid on Common Stock and Preferred Stock from funds lawfully available therefor as and when determined by the Board of Directors of the Corporation.

(b) No dividends shall be declared or paid on the Common Stock or Preferred Stock except as set forth in this Section 5.

Section 6. Redemption

(a) At the written election of holders of at least 66 2/3% in voting power of the outstanding shares of Preferred Stock made at any time on or after July 25, 2007 (the "Redemption Election"), the Corporation shall be required to redeem all, but not less than all, of the outstanding shares of Preferred Stock in three equal annual installments, upon the terms set forth in this Section 6. The first installment of such redemption (the "First Redemption Date")

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shall occur on a date specified in the Redemption Election, which shall be not less than ninety (90) days after the date of the Redemption Election, and the second and third installments of such redemption shall occur on the first and second anniversaries, respectively, of the First Redemption Date. The Corporation shall redeem one-third of the outstanding shares of Preferred Stock held by each holder on the First Redemption Date, one half of the outstanding shares of Preferred Stock then held by each holder on the first anniversary thereof and the remaining shares on the second anniversary thereof. On each such redemption date, the holders shall surrender the certificate or certificates for the shares to be redeemed duly endorsed for transfer or with duly executed stock transfer powers sufficient to permit transfer attached, at the offices of the Corporation or of any transfer agent for the Preferred Stock. The Corporation shall, as soon as practicable thereafter, issue and deliver to each holder a certificate or certificates for the balance of the shares not being redeemed. The redemption price of each share of Series A Preferred Stock shall be equal to
(i) $1.00 (as adjusted for any stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such Preferred Stock) plus all dividends declared but unpaid on such share on the applicable redemption date (the "Series A Redemption Amount") plus (ii) an additional amount computed like interest payable on the Series A Redemption Amount at the rate equal to simple interest of ten percent (10%) per annum from the date of issuance of such share of Preferred Stock. The redemption price of each share of Series B Preferred Stock shall be equal to (i) $2.50 (as adjusted for any stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such Preferred Stock) plus all dividends declared but unpaid on such share on the applicable redemption date (the "Series B Redemption Amount," each of the Series A Redemption Amount and the Series B Redemption Amount being sometimes hereinafter referred to as a "Redemption Amount") plus
(ii) an additional amount computed like interest payable on the Series B Redemption Amount at the rate equal to simple interest of ten percent (10%) per annum from the date of issuance of such share of Preferred Stock.

(b) Notice of redemption shall be sent by first class mail, postage prepaid, to each holder of record of the Preferred Stock, not less than thirty days nor more than sixty days prior to the First Redemption Date, at the address of such holder as it appears on the books of the Corporation. Such notice shall set forth (i) the First Redemption Date, the dates of the second and third installments of such redemption, and the place of redemption; and (ii) the number of shares to be redeemed on each date of redemption and the redemption price calculated in accordance with Section 6(a) above, on each such date. The Corporation shall be obligated to redeem the Preferred Stock on the dates and in the amounts set forth in the notice; provided, however, that any holder of Preferred Stock who is not party to a Redemption Election may convert any or all of the shares owned by such holder into Common Stock in accordance with Section 2(d) at any time prior to the date of redemption of such shares. The Corporation, if advised before the close of business on the relevant redemption date by written notice from any holder of record of Preferred Stock to be redeemed, shall credit against the number of shares of Preferred Stock required to be redeemed from such holder, and shall not redeem, the number of shares of Preferred Stock which shall have been converted by such holder on or before such date and which shall not previously have been credited against any redemption.

(c) If, on or before a redemption date, the funds necessary for such redemption shall have been set aside by the Corporation and deposited with a bank or trust

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company, in trust for the pro rata benefit of the holders of the Preferred Stock that has been called for redemption, then, notwithstanding that any certificates for shares that have been called for redemption shall not have been surrendered for cancellation, the shares represented thereby shall no longer be deemed outstanding from and after such redemption date, and all rights of holders of such shares so called for redemption shall forthwith, after such redemption date, cease and terminate with respect to such shares, excepting only the right to receive the redemption funds therefor to which they are entitled. Any interest accrued on funds so deposited and unclaimed by stockholders entitled thereto shall be paid to such stockholders at the time their respective shares are redeemed or to the Corporation at the time unclaimed amounts are paid to it. In case the holders of Preferred Stock which shall have been called for redemption shall not, within one year after the final redemption date, claim the amounts so deposited with respect to the redemption thereof, any such bank or trust company shall, upon demand, pay over to the Corporation such unclaimed amounts and thereupon such bank or trust company shall be relieved of all responsibility in respect thereof to such holder and such holder shall look only to the Corporation for the payment thereof. Any funds so deposited with a bank or trust company which shall not be required for such redemption by reason of the exercise subsequent to the date of such deposit of the right of conversion of any shares or otherwise shall be returned to the Corporation forthwith.

(d) If the Corporation for any reason fails to redeem any of the shares of Preferred Stock in accordance with Section 6(a) on or prior to the redemption dates determined in accordance with this Section 6, then, the Corporation shall become obligated to pay, in addition to the redemption price specified in Section 6(a), interest on the unpaid balance of such price, which shall accrue at a rate equal to the lesser of (i) one percent (1%) per month or
(ii) the maximum interest rate allowable under applicable law, until such price is paid in full.

(e) If the funds of the Corporation legally available for redemption of shares of Preferred Stock on a redemption date are insufficient to redeem the total number of shares of Preferred Stock submitted for redemption, those funds which are legally available will be used to redeem the maximum possible number of whole shares ratably among the holders of such shares based on the total Redemption Amounts owed to such holders. The shares of Preferred Stock not redeemed shall remain outstanding and entitled to all rights and preferences provided herein. At any time thereafter when additional funds of the Corporation are legally available for the redemption of such shares of Preferred Stock, such funds will be used, at the end of the next succeeding fiscal quarter, to redeem the balance of such shares, or such portion thereof for which funds are then legally available.

Section 7. No Reissuance of Preferred Stock. No shares of Preferred Stock acquired by the Corporation by reason of redemption, purchase, conversion or otherwise shall be reissued, and all such shares shall be canceled, retired and eliminated from the shares which the Corporation shall be authorized to issue.

Section 8. Residual Rights. All rights accruing to the outstanding shares of the Corporation not expressly provided for to the contrary herein shall be vested in the Common Stock.

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Section 9. Notices. All notices required or permitted to be sent pursuant to this Article FOURTH shall be deemed sufficient if contained in a written instrument and delivered in person or duly sent by first-class mail postage prepaid (other than in the case of notices to or from any non-U.S. resident) or by fax or DHL, Federal Express or other recognized express international courier service, addressed to the intended recipient at the recipient's address as it appears on the books of the Corporation.

RESOLVED: That Article SIXTH of the Certificate of Incorporation be and hereby is deleted in its entirety and the following Article SIXTH is inserted in lieu thereof:

SIXTH: In furtherance of and not in limitation of powers conferred by statute, it is further provided:

1. Election of directors need not be by written ballot.

2. Subject to the limitations and exceptions, if any, contained in the By-Laws of the Corporation or this Certificate of Incorporation, the By-Laws may be adopted, amended or repealed by the Board of Directors of the Corporation with, and only with, a Majority Directors Vote.

3. Subject to any applicable requirements of law, the books of the Corporation may be kept outside the State of Delaware at such locations as may be designated by the Board of Directors or in the Bylaws of the Corporation; and

4. Except as provided to the contrary in the provisions establishing a class or series of stock, the number of authorized shares of such class or series may be increased or decreased (but not below the number of shares thereof then outstanding) by the affirmative vote or written consent of a majority in voting power of the stock of the Corporation entitled to vote, voting together as a single class.

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IN WITNESS WHEREOF, the Corporation has caused this Certificate of Amendment to be signed by its Chief Executive Officer this 24th day of July, 2003.

ALNYLAM HOLDING CO.

By: /s/ John Maraganore
    ------------------------
    Name: John Maraganore
    Title: President and CEO

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State of Delaware Secretary of State Division of Corporations Delivered 04:31 PM 09/08/2003
FILED 04:31 PM 09/08/2003

SRV 030578313 - 3651907 FILE

CERTIFICATE OF AMENDMENT
OF
CERTIFICATE OF INCORPORATION
OF
ALNYLAM HOLDING CO.

Alnylam Holding Co., a Delaware corporation (hereinafter, the "CORPORATION"), hereby certifies as follows:

1. The name of the Corporation is Alnylam Holding Co. The date of filing of its original Certificate of Incorporation with the Delaware Secretary of State was May 8, 2003.

2. The Certificate of Incorporation of the Corporation, as filed on May 8, 2003, as amended by the Certificate of Amendment, as filed on July 24, 2003 (collectively, the "CERTIFICATE OF INCORPORATION"), is hereby further amended by deleting Article FOURTH thereof in its entirety and by substituting in lieu of said Article FOURTH the following new Article FOURTH:

"FOURTH: The total number of shares of all classes of stock which the Corporation has authority to issue is 56,911,480 shares, consisting of 34,739,392 shares of Common Stock, par value $.0001 per share (the "COMMON STOCK"), 3,000,010 shares of Series A Convertible Preferred Stock, par value $.0001 per share (the "SERIES A PREFERRED STOCK"), 16,672,078 shares of Series B Convertible Preferred Stock, $.0001 par value per share (the "SERIES B PREFERRED STOCK"), and 2,500,000 shares of Series C Convertible Preferred Stock, $.0001 par value per share (the "SERIES C PREFERRED STOCK"). The Series A Preferred Stock and Series B Preferred Stock are sometimes hereinafter collectively referred to as the "SENIOR PREFERRED STOCK." The Senior Preferred Stock and the Series C Preferred Stock are sometimes hereinafter collectively referred to as the "PREFERRED STOCK."

The powers, preferences and rights, and the qualifications, limitations or restrictions thereof, in respect of each class or series of stock of the Corporation shall be as follows:

Section 1. Liquidation Rights.

(a) Liquidation Payments.

(i) In the event of any liquidation, dissolution or winding up of the affairs of the Corporation, whether voluntary or involuntary, the holders of the then outstanding shares of Senior Preferred Stock shall be entitled to be paid first out of the assets of the Corporation available for distribution to holders of the Corporation's capital stock of all classes an amount equal to (a) in the case of the Series A Preferred Stock, $1.00 per share


(subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Senior Preferred Stock) and (b) in the case of the Series B Preferred Stock, $2.50 per share (subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Senior Preferred Stock), plus (in the case of all series of Senior Preferred Stock) all dividends declared thereon but unpaid and any and all other amounts owing with respect to such shares, as of and including the date full payment shall be tendered to the holders of the Senior Preferred Stock with respect to such liquidation, dissolution or winding up. Such amount is sometimes hereinafter referred to as the "SENIOR PREFERENCE AMOUNT."

If the assets of the Corporation shall be insufficient to permit the payment in full to the holders of the Senior Preferred Stock of the entire Senior Preference Amount so distributable to them, then the entire assets of the Corporation available for such distribution shall be distributed ratably among the holders of the Senior Preferred Stock in proportion to the full Senior Preference Amount each such holder is otherwise entitled to receive under this
Section l(a)(i).

No payment shall be made with respect to the Series C Preferred Stock or Common Stock unless and until fall payment has been made to the holders of the Senior Preferred Stock of the full Senior Preference Amount.

(ii) After all payments shall have been made in full to both the holders of the Senior Preferred Stock as contemplated by
Section l(a)(i) above and to the holders of any class of equity securities that is senior to or pari passu with the Senior Preferred Stock (the "ADDITIONAL SENIOR PREFERRED STOCK"), or funds necessary for such payments shall have been set aside by the Corporation in trust for the account of holders of Senior Preferred Stock and Additional Senior Preferred Stock so as to be available for such payments, the holders of the then outstanding shares of Series C Preferred Stock shall be entitled to receive out of the remaining assets available for distribution an amount equal to the price per share paid for the Series C Preferred Stock (subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Preferred Stock), plus all dividends declared thereon but unpaid and any and all other amounts owing with respect to such shares, as of and including the date full payment shall be tendered to the holders of the Series C Preferred Stock with respect to such liquidation, dissolution or winding up. Such amount is sometimes hereinafter referred to as the "SERIES C PREFERENCE AMOUNT," together with the Senior Preference Amount and the preference amount payable with respect to the Additional Senior Preferred Stock, the "PREFERENCE AMOUNT."

(iii) After all payments shall have been made in full to the holders of the Senior Preferred Stock, the Additional Senior Preferred Stock and the Series C Preferred Stock as contemplated by Section 1(a)(i) above and Section 1(a)(ii) above, respectively, or funds necessary for such payments shall have been set aside by the Corporation in trust for the account of holders of Senior Preferred Stock, the Additional Senior Preferred Stock and the Series C Preferred Stock so as to be available for such payments, remaining assets available for distribution shall be distributed among the holders of the Common Stock ratably in proportion to the number of shares of Common Stock then held by them.

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(iv) Upon any such liquidation, dissolution or winding up, any holder of Preferred Stock may elect to receive, in lieu of the Preference Amount otherwise payable to it pursuant to Section 1.1(a)(i) or
Section 1(a)(ii), an amount per share of Preferred Stock as would have been payable had such share been converted to Common Stock immediately prior to such liquidation, dissolution or winding up, plus all dividends declared but unpaid on each such share of Preferred Stock to and including the date full payment shall be tendered to the holders of the Preferred Stock with respect to such liquidation, dissolution or winding up.

(v) Upon conversion of shares of Preferred Stock into shares of Common Stock pursuant to Section 2 below, the holder of such Common Stock shall not be entitled to any preferential payment or distribution in case of any liquidation, dissolution or winding up, but shall share ratably in any distribution of the assets of the Corporation to all the holders of Common Stock.

(vi) The amounts payable with respect to shares of Preferred Stock under this Section 1(a) are sometimes hereinafter referred to as "LIQUIDATION PAYMENTS."

(b) Distributions Other than Cash. The amount deemed distributed to the holders of Preferred Stock upon any liquidation, dissolution, or winding-up (including any transaction treated as such pursuant to Section 1(c)), and the value of the consideration received by the Corporation for the issue of any Additional Shares of Common Stock (as defined below), if distributed or received, as the case may be, in any form of property (tangible or intangible) other than cash shall be the fair market value of such property. The term "FAIR MARKET VALUE" or "FAIR VALUE" means, with respect to any security, its Market Price (as defined below), and with respect to any property or assets other than cash or securities, the fair value thereof determined in good faith jointly by the Corporation (including the approval of a director nominated by holders of Common Stock) and the Requisite Holders (as defined below); provided, however, that if the parties are not able to agree within a reasonable period of time (not to exceed thirty (30) days) what amount constitutes fair value, then the fair value will be determined pursuant to the Arbitration Procedure (as defined below). The term "REQUISITE HOLDERS" means the holders of at least two-thirds in voting power of the then outstanding Preferred Stock. The term "MARKET PRICE" means, as to any security, the average of the closing prices of such security's sales on all United States securities exchanges on which such security may at the time be listed, or, if there have been no sales on any such exchange on any day, the average of the highest bid and lowest asked prices on all such exchanges at the end of such day, or, if on any day such security is not so listed, the average of the representative bid and asked prices quoted in the NASDAQ System as of 4:00 P. M., New York time, on such day, or, if on any day such security is not quoted in the NASDAQ System, the average of the highest bid and lowest asked prices on such day in the domestic over-the-counter market as reported by the National Quotation Bureau, Incorporated, or any similar or successor organization, in each such case averaged over a period of 30 days consisting of the thirty day period ending three days prior to the date as of which Market Price is being determined. If at any time such security is not listed on any domestic securities exchange or quoted in the NASDAQ System or the domestic over-the-counter market, the Market Price of such security shall be the fair value thereof as determined in good faith jointly by the Corporation (including the approval of a director nominated by holders of Common Stock) and the Requisite Holders; provided, however, that if such parties are not able to agree within a

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reasonable period of time (not to exceed ten (10) days) what amount constitutes the Market Price, then the Market Price shall be determined pursuant to the Arbitration Procedure. The term "ARBITRATION PROCEDURE" means the following procedure to determine the fair value or the Market Price, as applicable (the VALUATION AMOUNT"). The valuation amount shall be determined by an investment banking firm of national recognition, which firm shall be reasonably acceptable to the Corporation and the Requisite Holders. If the Corporation and the Requisite Holders are unable to agree upon an acceptable investment banking firm within ten (10) days after the date either party proposed that one be selected, the investment banking firm will be selected by an arbitrator located in the City of Boston, Massachusetts, selected by the American Arbitration Association (or if such organization ceases to exist, the arbitrator shall be chosen by a court of competent jurisdiction). The arbitrator shall select the investment banking firm (within ten (10) days of his appointment) from a list, jointly prepared by the Corporation and the Requisite Holders, of not more than six investment banking firms of national standing in the United States, of which no more than three may be named by the Corporation and no more than three may be named by the Requisite Holders. The arbitrator may consider, within the ten-day period allotted, arguments from the parties regarding which investment banking firm to choose, but the selection by the arbitrator shall be made in its sole discretion from the list of six. The determination of the final valuation amount by such investment banking firm shall be final and binding upon the parties. The Corporation shall pay one-half of the fees and expenses of the investment banking firm and arbitrator (if any) used to determine the valuation amount and the holders of the Preferred Stock shall pay the other half of such fees and expenses (allocated among them pro rata based on the number of shares of Preferred Stock, on an as-converted basis, then held by each of them). If required by any such investment banking firm or arbitrator, the Corporation and the holders of the Preferred Stock shall execute a retainer and engagement letter containing reasonable terms and conditions, including customary provisions concerning the rights of indemnification and contribution by the Corporation and the holders of the Preferred Stock in favor of such investment banking firm or arbitrator and its officers, directors, partners, employees, agents and affiliates.

(c) Merger as Liquidation, etc. The merger or consolidation of the Corporation into or with another corporation (except one in which the holders of capital stock of the Corporation immediately prior to such merger or consolidation continue to hold a majority in voting power of the capital stock of the surviving corporation, in which case the provisions of
Section 2(h) shall apply), or the sale of all or substantially all of the assets of the Corporation, shall be deemed to be a liquidation, dissolution or winding up of the affairs of the Corporation for purposes of this Section 1 with respect to the Preferred Stock, unless the holders of at least two-thirds in voting power of the then outstanding shares of Preferred Stock elect to the contrary; such election to be made by giving notice thereof to the Corporation at least three days before the effective date of such event. If such notice is given with respect to the Preferred Stock, the provisions of Section 2(h) shall apply. Unless such election is made with respect to the Preferred Stock, any amounts received by the holders of Preferred Stock as a result of such merger or consolidation shall be deemed to be applied toward, and all consideration received by the Corporation in such asset sale together with all other available assets of the Corporation shall be distributed toward, the Liquidation Payments.

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(d) Notice. In the event the Corporation shall propose to undertake any liquidation, dissolution or winding up of the affairs of the Corporation (including any merger, consolidation or sale of assets which may be deemed to be a liquidation, dissolution or winding up of the affairs of the Corporation under Section 1(c)), the Corporation shall, within ten (10) days after the date the Board of Directors approves such action or twenty (20) days prior to any stockholders' meeting called to approve such action, whichever is earlier, give each holder of Preferred Stock initial written notice of the proposed action. Such initial written notice shall describe the material terms and conditions of such proposed action, including a description of the stock, cash and property to be received by the holders of the Preferred Stock and of Common Stock upon consummation of the proposed action and the proposed date of delivery thereof. If any material change in the facts set forth in the initial notice shall occur, the Corporation shall promptly give each holder of Preferred Stock written notice of such material change. The Corporation shall not consummate any such proposed liquidation, dissolution or winding up before the expiration of thirty (30) days after the mailing of the initial notice or twenty
(20) days after the mailing of any subsequent written notice, whichever is later, provided, that any such 30-day or 20-day period may be shortened or waived upon the written consent of the holders of at least two-thirds in voting power of the outstanding shares of Preferred Stock. Any holder of outstanding shares of Preferred Stock may waive any notice required by this Section by a written instrument specifically indicating such waiver.

Section 2. Conversion. The holders of Preferred Stock shall have conversion rights as follows (the "CONVERSION RIGHTS"):

(a) Right to Convert; Conversion Price. Each share of Preferred Stock shall be convertible, without the payment of any additional consideration by the holder thereof and at the option of the bolder thereof, at any time after the date of issuance of such share, at the office of the Corporation or any transfer agent for the Preferred Stock, into such number of fully paid and nonassessable shares of Common Stock as is determined in accordance with the following:

(i) in the case of the Series A Preferred Stock, by dividing $1.00 by the Series A Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series A Preferred Stock without the payment of any additional consideration by the holder thereof (the "SERIES A CONVERSION PRICE") shall initially be $1.00 per share of Common Stock. Such initial Series A Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series A Preferred Stock is convertible, as hereinafter provided.

(ii) in the case of the Series B Preferred Stock, by dividing $2.50 by the Series B Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series B Preferred Stock without the payment of any additional consideration by the holder thereof (the "SERIES B CONVERSION PRICE") shall initially be $2.50 per share of Common Stock. Such initial Series B Conversion Price shall be subject to adjustment, in order

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to adjust the number of shares of Common Stock into which the Series B Preferred Stock is convertible, as hereinafter provided.

(iii) in the case of the Series C Preferred Stock, by dividing the price per share paid for the Series C Preferred Stock by the Series C Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series C Preferred Stock without the payment of any additional consideration by the holder thereof (the "SERIES C CONVERSION PRICE") shall initially be the price per share paid for the Series C Preferred Stock per share of Common Stock. Such initial Series C Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series C Preferred Stock is convertible, as hereinafter provided.

Each of the Series A Conversion Price, the Series B Conversion Price and the Series C Conversion Price is sometimes hereinafter referred to as a "CONVERSION PRICE."

The right of conversion with respect to any shares of Senior Preferred Stock which shall have been called for redemption under Section 6 hereof shall terminate at the close of business on the day fixed for redemption unless the Corporation shall default in the payment of the redemption price, in which case the right of conversion with respect to such shares shall continue unless and until such redemption price is paid in full.

(b) Automatic Conversion.

(i) Each share of Preferred Stock shall automatically be converted into shares of Common Stock at the applicable Conversion Price then in effect upon the closing of a firm commitment underwritten public offering pursuant to an effective registration statement under the Securities Act of 1933, as amended, covering the offer and sale of Common Stock for the account of the Corporation to the public at an offering price per share (prior to underwriters' discounts and commissions) of not less than $7.50 (as adjusted to reflect any stock dividends, distributions, combinations, reclassifications or other like transactions effected by the Corporation in respect of its Common Stock) and with gross proceeds to the Corporation of not less than $25,000,000 (a "QUALIFIED PUBLIC OFFERING"), in the event of which offering the person(s) entitled to receive the Common Stock issuable upon such conversion of the Preferred Stock shall not be deemed to have converted such Preferred Stock until the closing of such offering.

(ii) Each share of Preferred Stock shall automatically be converted into shares of Common Stock at the applicable Conversion Price then in effect upon the written election of the holders of not less than two-thirds in voting power of the then outstanding shares of Preferred Stock to require such mandatory conversion.

(c) Mechanics of Automatic Conversions. Upon the occurrence of an event specified in Section 2(b), the Preferred Stock of the applicable series shall be converted automatically without any further action by the holders of such shares and whether or not the certificates representing such shares are surrendered to the Corporation or its transfer agent;

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provided, however, that all holders of shares of Preferred Stock being converted shall be given written notice of the occurrence of the event specified in
Section 2(b) triggering such conversion, including the date such event occurred (the "MANDATORY CONVERSION DATE"), and the Corporation shall not be obligated to issue certificates evidencing the shares of Common Stock issuable upon such conversion unless certificates evidencing such shares of Preferred Stock being converted are either delivered to the Corporation or its transfer agent, or the holder notifies the Corporation or any transfer agent that such certificates have been lost, stolen, or destroyed and executes an agreement satisfactory to the Corporation (which agreement will not require a bond) to indemnify the Corporation from any loss incurred by it in connection therewith. On the Mandatory Conversion Date, all rights with respect to the Preferred Stock so converted shall terminate, except any of the rights of the holder thereof, upon surrender of the holder's certificate or certificates therefor, to receive certificates for the number of shares of Common Stock into which such Preferred Stock has been converted, together with cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock converted to and including the time of conversion. Upon the automatic conversion of the Preferred Stock, the holders of such Preferred Stock shall surrender the certificates representing such shares at the office of the Corporation or of its transfer agent. If so required by the Corporation, certificates surrendered for conversion shall be endorsed or accompanied by written instrument or instruments of transfer, in form satisfactory to the Corporation, duly executed by the registered holder or by the holder's attorney duly authorized in writing. Upon surrender of such certificates there shall be issued and delivered to such holder, or to such holder's nominee or nominees promptly at such office, a certificate or certificates for the number of shares of Common Stock into which the shares of Preferred Stock surrendered were convertible on the date on which such automatic conversion occurred, together with cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock converted to and including the time of conversion. Upon the automatic conversion of the Preferred Stock, all shares of Preferred Stock being converted by any holder thereof shall be aggregated for the purpose of determining the number of shares of Common Stock to which such holder shall be entitled, and no fractional share of Common Stock shall be issued. In lieu of any fractional share to which the holder would otherwise be entitled, the Corporation shall pay cash equal to such fraction multiplied by the fair market value of the Common Stock on the Mandatory Conversion Date, as reasonably determined by the Board of Directors in good faith (notwithstanding the provisions of Section 1(b)).

(d) Mechanics of Optional Conversions. Before any holder of Preferred Stock shall be entitled to convert the same into shares of Common Stock, the holder shall surrender the certificate or certificates therefor at the office of the Corporation or of any transfer agent for the Preferred Stock, and shall give written notice to the Corporation at such office that the bolder elects to convert the same and shall state therein the holder's name or the name or names of the holder's nominees in which the holder wishes the certificate or certificates for shares of Common Stock to be issued. On the date of conversion, all rights with respect to the Preferred Stock so converted shall terminate, except any of the rights of the holder thereof, upon surrender of the holder's certificate or certificates therefor, to receive certificates for the number of shares of Common Stock into which such Preferred Stock has been converted and

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cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock being converted to and including the time of conversion, If so required by the Corporation, certificates surrendered for conversion shall be endorsed or accompanied by written instrument or instruments of transfer, in form satisfactory to the Corporation, duly-executed by the registered holder or by the holder's attorney duly-authorized in writing. Upon the optional conversion of the Preferred Stock of any series, all shares of Preferred Stock being converted by any holder thereof shall be aggregated for the purpose of determining the number of shares of Common Stock to which such holder shall be entitled, and no fractional share of Common Stock shall be issued. In lieu of any fractional share to which the holder would otherwise be entitled, the Corporation shall pay cash equal to such fraction multiplied by the fair market value of the Common Stock on the date of conversion, as reasonably determined by the Board of Directors in good faith (notwithstanding the provisions of Section
1(b)). The Corporation shall, promptly after surrender of the certificate or certificates for conversion, issue and deliver at such office to such holder of Preferred Stock, or to the holder's nominee or nominees, a certificate or certificates for the number of shares of Common Stock to which the holder shall be entitled as aforesaid, together with cash in lieu of any fraction of a share and cash in an amount equal to all dividends declared but unpaid thereon and any and all other amounts owing with respect thereto at such time. Unless otherwise specified by the holder in the written notice of conversion, such conversion shall be deemed to have been made immediately prior to the close of business on the date of such surrender of the shares of Preferred Stock to be converted, and the person or persons entitled to receive the shares of Common Stock issuable upon conversion shall be treated for all purposes as the record holder or holders of such shares of Common Stock on such date.

(e) Adjustments to Conversion Price for Diluting Issues.

(i) Special Definitions For purposes of this Section 2(e), the following definitions shall apply:

(1) "OPTION" shall mean rights, options or warrants to subscribe for, purchase or otherwise acquire either Common Stock or Convertible Securities.

(2) "ORIGINAL ISSUE DATE" shall mean with respect to any series of Preferred Stock the first date on which a share of Preferred Stock of such series was issued.

(3) "CONVERTIBLE SECURITIES" shall mean any evidences of indebtedness, shares of capital stock (other than Common Stock) or other securities directly or indirectly convertible into or exchangeable for Common Stock.

(4) "ADDITIONAL SHARES OF COMMON STOCK" shall mean all shares of Common Stock issued (or, pursuant to Section
2(e)(iii), deemed to be issued) by the Corporation after the Original Issue Date, other than:

(A) shares of Common Stock issued or issuable upon conversion of shares of Preferred Stock;

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(B) up to 3,250,000 shares of Common Stock issued or issuable to employees, consultants or directors of the Corporation pursuant to a stock purchase or stock option plan or other employee stock bonus arrangement approved by a majority of the Corporation's Board of Directors, which majority includes at least two of the Preferred Stock Directors (as hereinafter defined) (such vote, a "MAJORITY DIRECTORS VOTE"); and provided that such number may be adjusted upward by a Majority Directors Vote;

(C) securities issued in connection with capital leases, bank financing or other similar transactions with a non-equity financing purpose, in each case as approved by a Majority Directors Vote;

(D) securities issued in connection with licensing or strategic alliance transactions, in each case as approved by a Majority Directors Vote;

(E) securities issued pursuant to the acquisition of another corporation or other entity by the Corporation by merger, purchase of substantially all of the assets, or other reorganization whereby the Corporation acquires not less than 51% of the voting power of such corporation or other entity in a transaction approved by a Majority Directors Vote;

(F) up to 1,000,000 shares of Series A Preferred Stock issued or issuable at a price not less than $1.00 per share pursuant to a Series A and Series B Convertible Preferred Stock Purchase Agreement to be entered into, and performed by, the Corporation with certain existing investors of the Corporation and Abingworth Management Limited;

(G) shares of Common Stock issued or issuable at any time to holders of capital stock of Ribopharma AG ("RIBOPHARMA") pursuant to the Share Exchange Agreement dated July 3, 2003 among the Corporation, Alnylam Pharmaceuticals, Inc. ("ALNYLAM"), Ribopharma and the stockholders of Ribopharma (the "SHARE EXCHANGE AGREEMENT");

(H) up to 898,173 shares of Series B Preferred Stock issued to Garching Innovation GmbH ("GARCHING"), Massachusetts Institute of Technology ("MIT"), Whitehead Institute for Biomedical Research ("WHITEHEAD INSTITUTE") and Max-Planck-Gesellschaft zur Foerderung der Wissenschaften e.V ("MAX-PLANCK") pursuant to license agreements between such entities and Alnylam;

(I) shares of capital stock of the Corporation issued to University of Massachusetts Medical School ("UMASS") pursuant to license agreements between the Corporation and UMASS, in each case as approved by a Majority Directors Vote;

(J) shares of Common Stock issued in connection with a Qualified Public Offering;

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(K) up to 94,044 shares of Common Stock issued to Abingworth Bioventures III A LP, Abingworth Bioventures III B LP, Abingworth Bioventures III C LP and Abingworth Bioventures III Executives LP (the "LENDERS") pursuant to Section 8.2 of the Loan Agreement, dated April 4, 2003, between the Lenders and Ribopharma and the Assignment of Loan among Ribopharma, the Corporation and the Lenders dated on or about the date hereof; and

(L) shares of Series C Preferred Stock and Common Stock issued to Merck & Co., Inc. ("MERCK") pursuant to a Securities Purchase Agreement to be entered into, and performed by, the Corporation and Merck.

(ii) No Adjustment of Conversion Price. Except as set forth in Section 2(e)(vi), no adjustment in the number of shares of Common Stock into which any series of Preferred Stock is convertible shall be made, by adjustment in the applicable Conversion Price for such series in respect of the issuance of Additional Shares of Common Stock, (a) unless the consideration per share for an Additional Share of Common Stock (determined pursuant to Section 2(e)(v)) issued or deemed to be issued by the Corporation is less than the applicable Conversion Price for such series in effect on the date of, and immediately prior to, the issue of such Additional Shares of Common Stock or (b) if prior to such issuance or within twenty (20) days thereafter the Corporation receives notice from the holders of at least two-thirds of the outstanding shares of such series of Preferred Stock that no such adjustment in the Conversion Price for such series shall be made.

(iii) Issue of Securities Deemed Issue of Additional Shares of Common Stock.

(1) Options and Convertible Securities. In the event the Corporation at any time or from time to time after the Original Issue Date for any series of Preferred Stock shall issue any Options (excluding for all purposes of this Section 2(e)(iii)(1) Options excluded from the definition of Additional Shares of Common Stock in Section
2(e)(i)(4)(B)) or Convertible Securities or shall fix a record date for the determination of holders of any class of securities entitled to receive any such Options or Convertible Securities, then the maximum number of shares (as set forth in the instrument relating thereto without regard to any provisions contained therein for a subsequent adjustment of such number) of Common Stock issuable upon the exercise of such Options or, in the case of Convertible Securities and Options therefor, the conversion or exchange of such Convertible Securities, shall be deemed to be Additional Shares of Common Stock issued as of the time of such issue or, in case such a record, date shall have been fixed, as of the close of business on such record date, and the Conversion Price of any such series of Preferred Stock shall be adjusted accordingly, provided, that in any such case in which Additional Shares of Common Stock are deemed to be issued:

(A) no further adjustment in the Conversion Price of any such series of Preferred Stock shall be made upon the subsequent issue of Convertible Securities or shares of Common Stock upon the exercise of such Options or conversion or exchange of such Convertible Securities;

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(B) if such Options or Convertible Securities by their terms provide, with the passage of time or otherwise, for any increase in the consideration payable to the Corporation, or decrease in the number of shares of Common Stock issuable, upon the exercise, conversion or exchange thereof, the Conversion Price of any such series of Preferred Stock computed upon the original issue thereof (or upon the occurrence of a record date with respect thereto), and any subsequent adjustments based thereon, shall, upon any such increase or decrease becoming effective, be recomputed to reflect such increase or decrease insofar as it affects such Options or the rights of conversion or exchange under such Convertible Securities;

(C) upon the expiration of any such Options or any rights of conversion or exchange under such Convertible Securities which shall not have been exercised, the Conversion Price of any such series of Preferred Stock computed upon the original issue thereof (or upon the occurrence of a record date with respect thereto), and any subsequent adjustments based thereon, shall, upon such expiration, be recomputed as if:

(I) In the case of Convertible Securities or Options for Common Stock the only Additional Shares of Common Stock issued were the shares of Common Stock, if any, actually issued upon the exercise of such Options or the conversion or exchange of such Convertible Securities and the consideration received therefor was the consideration actually received by the Corporation for the issue of all such Options, whether or not exercised, plus the consideration actually received by the Corporation upon such exercise, or for the issue of all such Convertible Securities which were actually converted or exchanged, plus the additional consideration, if any, actually received by the Corporation upon such conversion or exchange; and

(II) in the case of Options for Convertible Securities only the Convertible Securities, if any, actually issued upon the exercise thereof were issued at the time of issue of such Options, and the consideration received by the Corporation for the Additional Shares of Common Stock deemed to have been then issued was the consideration actually received by the Corporation for the issue of all such Options, whether or not exercised, plus the consideration deemed to have been received by the Corporation (determined pursuant to Section 2(e)(v)) upon the issue of the Convertible Securities with respect to which such Options were actually exercised;

(D) no readjustment pursuant to clause (B) or (C) above shall have the effect of increasing the Conversion Price of any such series of Preferred Stock to an amount which exceeds the lower of
(1) the Conversion Price of any such series of Preferred Stock immediately prior to adjustment on the original adjustment date, or (ii) the Conversion Price of any such series of Preferred Stock that would have resulted from any issuance of Additional Shares of Common Stock between the original adjustment date and such readjustment date;

(E) if such record date shall have been fixed and such Options or Convertible Securities are not issued on the date fixed therefor, the adjustment previously made in the Conversion Price of any such series of Preferred Stock which became

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effective on such record date shall be canceled as of the close of business on such record date, and thereafter the Conversion Price of any such series of Preferred Stock shall be adjusted pursuant to this Section 2(e)(iii) as of the actual date of their issuance.

(2) Stock Dividends, Stock Distributions and Subdivisions. In the event the Corporation at any time or from time to time after the Original Issue Date for any series of Preferred Stock shall declare or pay any dividend or make any other distribution on the Common Stock payable in Common Stock or effect a subdivision of the outstanding shares of Common Stock (by reclassification or otherwise than by payment of a dividend in Common Stock), then and in any such event, Additional Shares of Common Stock shall be deemed to have been issued with respect to such series of Preferred Stock:

(A) in the case of any such dividend or distribution, immediately after the close of business on the record date for the determination of holders of any class of securities entitled to receive such dividend or distribution, or

(B) in the case of any such subdivision, at the close of business on the date immediately prior to the date upon which such corporate action becomes effective.

If such record date shall have been fixed and no part of such dividend or distribution shall have been paid on the date fixed therefor, the adjustment previously made in the Conversion Price of any such series of Preferred Stock which became effective on such record date shall be canceled as of the close of business on such record date, and thereafter the Conversion Price of such series of Preferred Stock shall be adjusted pursuant to this Section 2(e)(iii) as of the time of actual payment of such dividend or distribution.

(iv) Adjustment of Conversion Price Upon Issuance of Additional Shares of Common Stock.

(1) Series A Preferred Stock and Series B Preferred Stock: In the event that at anytime or from time to time after the Original Issue Date for the Series A Preferred Stock or Series B Preferred Stock the Corporation shall issue Additional Shares of Common Stock (including, without limitation, Additional Shares of Common Stock deemed to be issued pursuant to Section 2(e)(iii)(1) but excluding Additional Shares of Common Stock deemed to be issued pursuant to Section 2(e)(iii)(2), which event is dealt with in Section 2(e)(vi)(1)), without consideration or for a consideration per share less than the Series A Conversion Price or the Series B Conversion Price in effect on the date of and immediately prior to such issue, then and in such event, such Series A Conversion Price or Series B Conversion Price, as the case may be, shall be reduced, concurrently with such issue, to a price (calculated to the nearest one tenth of one cent) determined in accordance with the following formula:

NCP=(P(1))(Q(1))+(P(2))(Q(2))/Q(1)+Q(2)

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where:

         NCP  =    New Series A Conversion Price or Series B Conversion
                   Price, as applicable;

         P(1) =    Series A Conversion Price or Series B Conversion
                   Price, as applicable, in effect immediately prior to
                   new issue;

         Q(1) =    Number of shares of Common Stock outstanding, or
                   deemed to be outstanding as set forth below,
                   immediately prior to such issue;

         P(2) =    Price per share received by the Corporation upon such
                   issue;

         Q(2) =    Number of shares of Common Stock issued, or deemed to
                   have been issued, in the subject transaction;

Provided, that for the purpose of this Section 2(e)(iv), all shares of Common Stock issuable upon conversion or exercise of Options or Convertible Securities (including without limitation shares of Preferred Stock) outstanding immediately prior to such issue shall be deemed to be outstanding, and immediately after any Additional Shares of Common Stock are deemed issued pursuant to Section
2(e)(iii), such Additional Shares of Common Stock shall be deemed to be outstanding.

(2) Series C Preferred Stock: If there shall occur any adjustment in the Series B Conversion Price pursuant to Section 2(e)(iv)(1) above, then and in such event, the Series C Conversion Price shall be automatically adjusted (rounded down to the nearest cent) by the same percentage as the percentage of the adjustment to the Series B Conversion Price.

(v) Determination of Consideration. For purposes of this Section 2(e), the consideration received by the Corporation for the issue of any Additional Shares of Common Stock shall be computed as follows:

(1) Cash and Property. Such consideration shall:

(A) insofar as it consists of cash, be computed at the aggregate amounts of cash received by the Corporation excluding amounts paid or payable for accrued interest or accrued dividends;

(B) insofar as it consists of property other than cash, be computed at the fair value thereof at the time of such issue, as determined in accordance with Section 1(b); and

(C) in the event Additional Shares of Common Stock are issued together with other shares or securities or other assets of the Corporation for

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consideration which covers both, be the proportion of such consideration so received, computed as provided in clauses (A) and (B) above, as determined in good faith by the Board of Directors.

(2) Options and Convertible Securities. The consideration per share received by the Corporation for Additional Shares of Common Stock deemed to have been issued pursuant to Section
2(e)(iii)(1), relating to Options and Convertible Securities, shall be determined by dividing (x) the total amount, if any, received or receivable by the Corporation as consideration for the issue of such Options or Convertible Securities, plus the minimum aggregate amount of additional consideration (as set forth in the instruments relating thereto, without regard to any provision contained therein for a subsequent adjustment of such consideration) payable to the Corporation upon the exercise of such Options or the conversion or exchange of such Convertible Securities, or in the case of Options for Convertible Securities, the exercise of such Options for Convertible Securities and the conversion or exchange of such Convertible Securities, by (y) the maximum number of shares of Common Stock (as set forth in the instruments relating thereto, without regard to any provision contained therein for a subsequent adjustment of such number) issuable upon the exercise of such Options or the conversion or exchange of such Convertible Securities.

(vi) Adjustment for Dividends, Distributions, Subdivisions, Combinations or Consolidations of Common Stock.

(1) Stock Dividends, Distributions or Subdivisions. In the event the Corporation shall be deemed to issue Additional Shares of Common Stock pursuant to Section 2(e)(iii)(2) in a stock dividend, stock distribution or subdivision, the Conversion Price of each series of Preferred Stock in effect immediately before such deemed issuance shall, concurrently with the effectiveness of such deemed issuance, be proportionately decreased.

(2) Combinations or Consolidations. In the event the outstanding shares of Common Stock shall be combined or consolidated, by reclassification or otherwise, into a lesser number of shares of Common Stock, the Conversion Price of each series of Preferred Stock in effect immediately prior to such combination or consolidation shall, concurrently with the effectiveness of such combination or consolidation, be proportionately increased.

(f) Adjustments for Certain Dividends and Distributions. In the event that at any time or from time to time after the Original Issue Date for any series of Preferred Stock the Corporation shall make or issue, or fix a record date for the determination of holders of Common Stock entitled to receive, a dividend or other distribution payable in securities of the Corporation other than shares of Common Stock or securities the issuance of which are deemed to be issuances of Common Stock under Section 2(e)(iii), then and in each such event provision shall be made so that the holders of Preferred Stock of such series shall receive upon conversion thereof in addition to the number of shares of Common Stock receivable thereupon, the amount of securities of the Corporation that they would have received had their Preferred Stock been converted into Common Stock immediately prior to such event and had they thereafter, during the period from the date of such event to and including the conversion date, retained such

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securities receivable by them as aforesaid during such period, giving application during such period to all adjustments called for herein.

(g) Adjustment for Reclassification, Exchange, or Substitution. In the event that at any time or from time to time after the Original Issue Date for any series of Preferred Stock, the Common Stock issuable upon the conversion of such series of Preferred Stock shall be changed into the same or a different number of shares of any class or series of stock or other securities or property, whether by capital reorganization, reclassification, recapitalization or otherwise (other than a subdivision or combination of shares or stock dividend provided for above, or a merger, consolidation, or sale of assets provided for below), then and in each such event the holder of any shares of such series of Preferred Stock shall have the right thereafter to convert such shares into the kind and amount of shares of stock and other securities and property receivable upon such reorganization, reclassification, recapitalization or other change by the holder of a number of shares of Common Stock equal to the number of shares of Common Stock into which such shares of such series of Preferred Stock might have been converted immediately prior to such reorganization, reclassification, recapitalization or change, all subject to further adjustment as provided herein.

(h) Adjustment for Merger, Consolidation or Sale of Assets. In the event that at any time or from time to time the Corporation shall merge or consolidate with or into another entity or sell all or substantially all of its assets, and such consolidation, merger or sale is not treated as a liquidation under Section 1(c), each share of Preferred Stock shall thereafter be convertible into the kind and amount of shares of stock or other securities or property to which a holder of the number of shares of Common Stock of the Corporation deliverable upon conversion of such Preferred Stock would have been entitled to receive upon such consolidation, merger or sale; and, in such case, appropriate adjustment (as determined in good faith by the Board of Directors) shall be made in the application of the provisions set forth in this
Section 2 with respect to the rights and interest thereafter of the holders of shares of such Preferred Stock, to the end that the provisions set forth in this
Section 2 (including provisions with respect to changes in and other adjustments of the Conversion Prices) shall thereafter be applicable, as nearly as reasonably may be, in relation to any shares of stock or other securities or property thereafter deliverable upon the conversion of such Preferred Stock.

(i) Special Mandatory Conversion.

(i) Mandatory Conversion Upon Failure to Participate in Equity Financing.

(1) When any holder of shares of Series A Preferred Stock is entitled to exercise its right of first refusal (the "RIGHT OF FIRST REFUSAL") as set forth in Section 3 of that certain Investor Rights Agreement, dated as of July 31, 2003, by and among the Corporation and certain of its stockholders (the "RIGHTS AGREEMENT") with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series A Conversion Price in effect immediately prior to such issue or sale (a "SERIES A DILUTIVE ISSUANCE") and (x) the Corporation has complied in all

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material respects with its obligations pursuant to Section 3 of the Rights Agreement in respect thereof and (y) the provisions of the Right of First Refusal applicable to the particular Series A Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not, by exercise of such holder's Right of First Refusal, acquire at least such holder's Basic Amount (as defined in and calculated in accordance with Section 3.1 of the Rights Agreement) of New Securities (as defined in Section 3.2 of the Rights Agreement) in such Series A Dilutive Issuance, then each Non-Participating Series A Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series A Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series A Dilutive Issuance, at the Series A Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series A Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(1) shall be deemed to have waived with respect to each Non-Participating Series A Share (A) the reduction in the Series A Conversion Price of such Non-Participating Series A Share that would have otherwise resulted pursuant to Section 2(e) from such Series A Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series A Share pursuant to this Section 2(i)(i)(1), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES A SHARES" shall mean such number of shares of Series A Preferred Stock of a holder that is determined by multiplying the total number of shares of Series A Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(2) When any holder of shares of Series B Preferred Stock is entitled to exercise its Right of First Refusal as set forth in Section 3 of the Rights Agreement with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series B Conversion Price in effect immediately prior to such issue or sale (a "SERIES B DILUTIVE ISSUANCE") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 3 of the Rights Agreement in respect thereof and (y) the provisions of the Right of First Refusal applicable to the particular Series B Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not by exercise of such holder's Right of First Refusal, acquire at least such holder's Basic Amount of New Securities in such Series B Dilutive Issuance, then each Non-Participating Series B Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series B Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series B Dilutive Issuance, at the Series B Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series B Preferred Stock are converted into shares of Common

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Stock in accordance with this Section 2(i)(i)(2) shall be deemed to have waived with respect to each Non-Participating Series B Share (A) the reduction in the Series B Conversion Price of such Non-Participating Series B Share that would have otherwise resulted pursuant to Section 2(e) from such Series B Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series B Share pursuant to this Section 2(i)(i)(2), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES B SHARES" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B Dilutive Issuance minus the number of new Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series B Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(3) When any holder of shares of Series C Preferred Stock is entitled to exercise its right of first refusal (the "SERIES C RIGHT OF FIRST REFUSAL") as set forth in Section 16 of that certain Investor Rights Agreement, dated as of September 8,2003, by and between the Corporation and Merck & Co.,Inc. (the "SERIES C RIGHTS AGREEMENT") with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series C Conversion Price in effect immediately prior to such issue or sale (a "SERIES C DILUTIVE ISSUANCE") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 16 of the Series C Rights Agreement in respect thereof and (y) the provisions of the Series C Right of First Refusal applicable to the particular Series C Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Series C Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not, by exercise of such holder's Series C Right of First Refusal, acquire at least such holder's Basic Amount (as defined in and calculated in accordance with Section 16(a) of the Series C Rights Agreement) of New Securities (as defined in Section 16(b) of the Series C Rights Agreement) in such Series C Dilutive Issuance, then each Non-Participating Series C Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series C Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series C Dilutive Issuance, at the Series C Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series C Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(3) shall be deemed to have waived with respect to each Non-Participating Series C Share (A) the reduction in the Series C Conversion Price of such Non-Participating Series C Share that would have otherwise resulted pursuant to Section 2(e) from such Series C Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series C Share pursuant to this Section 2(i)(i)(3), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES C SHARES" shall mean such number of shares of Series C Preferred Stock of a holder that is determined by multiplying the total number of shares of Series C Preferred Stock held by such holder by a fraction, the numerator of which is such holder's

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Basic Amount in such Series C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to
Section 16(i) of the series C Rights Agreement) in the Series C Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(ii) Notwithstanding the foregoing, in the event that the Corporation issues equity securities in a transaction that is both a Series A Dilutive Issuance and a Series B Dilutive Issuance (the "SERIES A/B DILUTIVE ISSUANCE") and a holder of both Series A Preferred Stock and Series B Preferred Stock does not acquire at least such holder's Basic Amount of New Securities, then the shares of Senior Preferred Stock of such holder that shall be converted into shares of Common Stock in accordance with this Section 2(i) shall bo allocated pro rata to such holder's Series A Preferred Stock and Series B Preferred Stock. For purposes of clarity, in the event of a Series A/B Dilutive Issuance, (A) the term "NON-PARTICIPATING SERIES A SHARES" shall mean such number of shares of Series A Preferred Stock of a holder that is determined by multiplying the total number of shares of Series A Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B Dilutive Issuance minus the number of new Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B Dilutive Issuance and the denominator of which is such holder's Basic Amount and (B) the term "NON-PARTICIPATING SERIES B SHARES" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B Dilutive Issuance minus the number of new Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(iii) Mechanics of Special Mandatory Conversion. The holder of any shares of Series A Preferred Stock, Series B Preferred Stock or Series C Preferred Stock converted pursuant to this Section 2(i) shall surrender the certificate or certificates of such shares, duly endorsed for transfer or with duly executed stock transfer powers sufficient to permit transfers attached, at the office of the Corporation or any transfer agent for such Preferred Stock (or such holder shall notify the Corporation or any transfer agent that such certificates have been lost, stolen or destroyed and shall execute an agreement reasonably satisfactory to the Corporation (which agreement will not require a bond) to indemnify the Corporation from any loss incurred by it in connection therewith). The Corporation shall, as soon as practicable thereafter, issue and deliver at such office to such holder of Preferred Stock, or to such holder's nominee or nominees, a certificate or certificates for the number of full shares of Common Stock to which such holder shall be entitled as aforesaid. Such conversion shall be deemed to have been made immediately prior to the consummation of the Series A Dilutive Issuance, Series B Dilutive Issuance or Series C Dilutive Issuance, as the case may be, unless the transfer books of the Corporation are closed on that date, in which event such holder shall be deemed to have become a holder of record of Common Stock on the next succeeding date on which the transfer books are open.

(j) No Impairment. The Corporation shall not, by amendment of its Certificate of Incorporation or through any reorganization, transfer of assets, consolidation,

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merger, dissolution, issue or sale of securities or any other voluntary action, avoid or seek to avoid the observance or performance of any of the terms to be observed or performed hereunder by the Corporation but shall at all times in good faith assist in the carrying out of all the provisions of this Section 2 and in the taking of all such action as may be necessary or appropriate in order to protect the Conversion Eights of the holders of Preferred Stock against impairment.

(k) Certificate as to Adjustments. Upon the occurrence of each adjustment or readjustment of the Conversion Price for a particular series of Preferred Stock pursuant to this Section 2, the Corporation at its expense shall promptly compute such adjustment or readjustment in accordance with the terms hereof and furnish to each holder of shares of such series of Preferred Stock a certificate setting forth such adjustment or readjustment and showing in detail the facts upon which such adjustment or readjustment is based. The Corporation shall, upon the written request at any time of any holder of shares of a particular series of Preferred Stock, furnish or cause to be furnished to such holder a like certificate setting forth (i) such adjustments and readjustments, (ii) the Conversion Price for such series at the time in effect, and (iii) the number of shares of Common Stock and the amount, if any, of other property which at the time would be received upon the conversion of each share of such series of Preferred Stock.

(l) Notices of Record Date. In the event of any taking by the Corporation of a record of the holders of any class or series of securities for the purpose of determining the holders thereof who are entitled to receive any dividend or other distribution, the Corporation shall mail to each holder of Preferred Stock at least ten (10) days prior to such record date a notice specifying the date on which any such record is to be taken for the purpose of such dividend or distribution.

(m) Common Stock Reserved. The Corporation shall reserve and keep available, free from pre-emptive rights, out of its authorized but unissued Common Stock, solely for the purpose of effecting the conversion of Preferred Stock, such number of shares of Common Stock as shall from time to time be sufficient to effect conversion of the Preferred Stock. If at any time the number of authorized but unissued shares of Common Stock shall not be sufficient to effect the conversion of all the then outstanding shares of Preferred Stock, the Corporation shall promptly take such corporate action as may, in the opinion of its counsel, be necessary to increase its authorized but unissued shares of Common Stock to such number of shares as shall be sufficient for such purpose.

(n) Certain Taxes. The Corporation shall pay any issue or transfer taxes payable in connection with the conversion of Preferred Stock, provided, however, that the Corporation shall not be required to pay any tax which may be payable in respect of any transfer to a name other than that of the holder of the Preferred Stock.

(o) Closing of Books. The Corporation shall at no time close its transfer books against the transfer of any Preferred Stock or of any shares of Common Stock issued or issuable upon the conversion of any shares of Preferred Stock in any manner which interferes with the timely conversion or transfer of such Preferred Stock or Common Stock.

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(p) Validity of Shares. The Corporation agrees that it will from time to time take all such actions as may be required to assure that all shares of Common Stock which may be issued upon conversion of any Preferred Stock will, upon issuance, be legally and validly issued, fully paid and nonassessable and free from all taxes, liens and charges with respect to the issue thereof.

Section 3. Restrictions.

(a) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 60% in voting power of the then outstanding shares of Series A Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series A Preferred Stock;

(ii) amend or repeal any provision of, or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any corporation or other entity in which it holds, directly or indirectly, an equity interest representing more than 50% of the voting power of all outstanding capital stock of such entity (any such entity, a "SUBSIDIARY") to amend or repeal any provision of or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-Laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series A Preferred Stock or increase or decrease the number of authorized shares of Series A Preferred Stock; or

(iii) authorize or designate any class or series of capital stock having rights senior to or on a parity with the Series A Preferred Stock as to dividends, liquidation or otherwise.

(b) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 66 2/3% in voting power of the then outstanding shares of Series B Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series B Preferred Stock;

(ii) amend or repeal any provision of or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any Subsidiary to amend or repeal any provision of, or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series B Preferred Stock or increase or decrease the number of authorized shares of Series B Preferred Stock; or

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(iii) authorize or designate any class or series of capital stock having rights senior to or on a parity with the Series B Preferred Stock as to dividends, liquidation or otherwise.

(c) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least a majority of the voting power of the then outstanding shares of Series C Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series C Preferred Stock; or

(ii) amend or repeal any provision of or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any Subsidiary to amend or repeal any provision of, or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series C Preferred Stock or increase or decrease the number of authorized shares of Series C Preferred Stock.

(d) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 66 2/3% in voting power of the then outstanding shares of all series of Senior Preferred Stock, voting together as a single class, the Corporation will not:

(i) pay or declare any dividend or distribution on any shares of its capital stock (except dividends payable solely in shares of Common Stock), or apply any of its assets to the redemption, retirement, purchase or acquisition, directly or indirectly, through Subsidiaries or otherwise, of any shares of the Corporation's capital stock except (a) as expressly set forth herein or (b) for repurchases of Common Stock upon termination of employment or service pursuant to written agreements in effect on the date hereof or written agreements approved by the Corporation's Board of Directors or a committee thereof);

(ii) sell, lease or otherwise dispose of all or substantially all of the assets of the Corporation, or permit any Subsidiary to sell, lease or otherwise dispose of all or substantially all of the assets of such Subsidiary;

(iii) voluntarily liquidate or dissolve or permit any Subsidiary to voluntarily liquidate or dissolve;

(iv) enter into any merger, consolidation or capital reorganization, or permit any Subsidiary to enter into any merger, consolidation or capital reorganization, except as contemplated by the Share Exchange Agreement;

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(v) effect any acquisition of the capital stock of another entity that results in the consolidation of that entity into the results of operations of the Corporation, except as contemplated by the Share Exchange Agreement;

(vi) increase the number of seats on the Board of Directors above nine;

(vii) acquire all or substantially all of the assets of another entity, except as contemplated by the Share Exchange Agreement;

(viii) incur indebtedness for borrowed funds, in a single or related series of transactions, in principal amount at any time outstanding in excess of $500,000 (except in connection with the transactions contemplated by the Share Exchange Agreement, including the assumption of indebtedness owed by Ribopharma to Abingworth Bioventures III A LP, Abingworth Bioventures III B LP, Abingworth Bioventures III C LP and Abingworth Bioventures Executives LP.)

(ix) create a new plan or arrangement for the grant of stock options, stock appreciation rights, restricted stock or other similar stock-based compensation, or increase the number of shares or other rights available under such existing plan or arrangement, except for increases in the number of shares approved in the manner provided in Section
2(e)(i)(4)(B);or

(x) any provision of the By-Laws of the Corporation to the contrary notwithstanding, increase the number of directors constituting the entire Board of Directors, except as necessary to add independent outside directors whose election is subject to the approval of all of the Preferred Stock Directors then in office (as defined below).

(e) (i) Notwithstanding any other provision of this Certificate of Incorporation or the Corporation's By-Laws to the contrary, written notice of any action specified in Section 3(a), 3(b) or 3(d) shall be given by the Corporation to each holder of outstanding shares of Senior Preferred Stock at least twenty (20) days before the date on which the books of the Corporation shall close or a record shall be taken with respect to such proposed action, or, if there shall be no such date, at least twenty (20) days before the date when such proposed action is scheduled to take place. Any holder of outstanding shares of Senior Preferred Stock may waive any notice required by (his Section by a written document specifically indicating such waiver, and the holders of two-thirds in voting power of all series of Senior Preferred Stock, voting together as a single class, may waive any such notice on behalf of all holders of the Senior Preferred Stock.

(ii) Notwithstanding any other provision of this Certificate of Incorporation or the Corporation's By-Laws to the contrary, written notice of any action specified in Section 3(c) shall be given by the Corporation to each holder of outstanding shares of Series C Preferred Stock at least twenty (20) days before the date on which the books of the Corporation shall close or a record shall be taken with respect to such proposed action, or, if there shall be no such date, at least twenty (20) days before the date when such proposed action

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is scheduled to take place. Any holder of outstanding shares of Series C Preferred Stock may waive any notice required by this Section by a written document specifically indicating such waiver, and the holders of a majority in voting power of the Series C Preferred Stock, voting together as a single class, may waive any such notice on behalf of all holders of the Series C Preferred Stock.

Section 4. Voting Rights.

(a) Except as otherwise required by law or set forth in this Certificate of Incorporation, the holders of Preferred Stock shall be entitled to notice of any meeting of stockholders and shall vote together with the holders of Common Stock as a single class upon any matter submitted to the stockholders for a vote. With respect to all questions as to which, under law, stockholders are required to vote by classes or series, the Preferred Stock shall vote separately as a single class and series apart from the Common Stock. Shares of Common Stock and Preferred Stock shall entitle the holders thereof to the following number of votes on any matter as to which they are entitled to vote:

(i) Holders of Common Stock shall have one vote per share; and

(ii) Holders of Preferred Stock shall have that number of votes per share as is equal to the number of shares of Common Stock (including fractions of a share) into which each such share of Preferred Stock held by such holder could be converted on the date for determination of stockholders entitled to vote at the meeting or on the date of any written consent.

(b) Except as contemplated by the Rights Agreement, the Board of Directors shall not delegate any of its powers or duties to any committee of the Board of Directors without the consent of all of the Preferred Stock Directors then in office.

(c) In addition to any other vote required by law or by this Certificate of Incorporation, the Corporation shall not amend this Certificate of Incorporation, whether by merger, consolidation or otherwise, so as to amend, alter or repeal the powers, preferences or special rights of the Senior Preferred Stock in a manner that affects them adversely, without the written consent or affirmative vote of the holders of a majority of the then outstanding shares of Senior Preferred Stock, given in writing or by vote at a meeting, consenting or voting (as the case may be) separately as a class.

(d) In addition to any other vote required by law or by this Certificate of Incorporation, the Corporation shall not amend this Certificate of Incorporation, whether by merger, consolidation or otherwise, so as to amend, alter or repeal the powers, preferences or special rights of the Series C Preferred Stock in a manner that affects them adversely, without the written consent or affirmative vote of the holders of a majority of the then outstanding shares of Series C Preferred Stock, given in writing or by vote at a meeting, consenting or voting (as the case maybe) separately as a class.

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(e) At all times during which the number of outstanding shares of Series A Preferred Stock equals or exceeds 1,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Series A Preferred Stock shall have the exclusive right, separately from the Common Stock and the other series of Preferred Stock, to elect two directors of the Corporation. Any such director is sometimes hereinafter referred to as a "SERIES A PREFERRED STOCK DIRECTOR." At all times during which the number of outstanding shares of Series B Preferred Stock equals or exceeds 1,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Series B Preferred Stock shall have the exclusive right, separately from the Common Stock and the other series of Preferred Stock, to elect one director of the Corporation. Such director is sometimes hereinafter referred to as a "SERIES B PREFERRED STOCK DIRECTOR." At all times during which the number of outstanding shares of Senior Preferred Stock equals or exceeds 2,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Senior Preferred Stock, voting together as a single class, shall have the exclusive right, separately from the Common Stock, to elect one director of the Corporation. Such director is sometimes hereinafter referred to as a "SERIES A/B PREFERRED STOCK DIRECTOR" and each of the Series A Preferred Stock Directors, the Series B Preferred Stock Director and the Series A/B Director is sometimes hereinafter referred to as a "PREFERRED STOCK DIRECTOR." Each Preferred Stock Director shall be elected by the vote or written consent of the holders of a plurality in voting power of the series of Senior Preferred Stock entitled to elect such Preferred Stock Director. If a Preferred Stock Director shall cease to serve as a director for any reason, another director elected by the holders of the series of Senior Preferred Stock entitled to elect such Preferred Stock Director shall replace such director. Any Preferred Stock Director may be removed, with or without cause, and a replacement Preferred Stock Director may be elected in his stead, at any time by the affirmative vote at a meeting duly called for the purpose, or by written consent, of the holders of a plurality in voting power of the outstanding series of Senior Preferred Stock entitled to elect such director.

(f) At all times during which shares of Common Stock remain outstanding, the holders of the outstanding shares of Common Stock shall have the exclusive right, separately from the Preferred Stock, to elect two directors of the Corporation (the "COMMON STOCK DIRECTORS"). Each Common Stock Director shall be elected by the vote or written consent of the holders of a plurality in voting power of the outstanding Common Stock. If a Common Stock Director shall cease to serve as a director for any reason, another director elected by the holders of the Common Stock shall replace such director. Any Common Stock Director may be removed, with or without cause, and a replacement Common Stock Director may be elected in his stead, at any time by the affirmative vote at a meeting duly called for the purpose, or by written consent, of the holders of a plurality in voting power of the outstanding Common Stock.

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(g) All other directors of the Corporation shall be elected by the holders of the Common Stock and Preferred Stock voting together as a single class, with the holders of Preferred Stock to have that number of votes as is determined in accordance with Section 4(a)(ii).

(h) In addition to any rights which may be available under the Corporation's By-Laws or otherwise under law, the holders of not less than twenty percent (20%) in voting power of the outstanding Senior Preferred Stock shall be entitled to call meetings of the stockholders of the Corporation. Within five (5) business days after written application by the holders of not less than twenty percent (20%) in voting power of the outstanding Senior Preferred Stock, the President or Secretary, or such other officer of the Corporation as may be authorized in the By-Laws of the Corporation to give notice of meetings of stockholders of the Corporation, shall notify each stockholder of the Corporation entitled to such notice of the date, time, place and purpose of such meeting.

Section 5. Dividends.

(a) Dividends may be declared and paid on Common Stock and Preferred Stock from funds lawfully available therefor as and when determined by the Board of Directors of the Corporation.

(b) No dividends shall be declared or paid on the Common Stock or Preferred Stock except as set forth in this Section 5.

Section 6. Redemption

(a) At the written election of holders of at least 66 2/3% in voting power of the outstanding shares of Senior Preferred Stock made at any time on or after July 25,2007 (the "REDEMPTION ELECTION"), the Corporation shall be required to redeem all, but not less than all, of the outstanding shares of Senior Preferred Stock in three equal annual installments, upon the terms set forth in. this Section 6. The first installment of such redemption (the "FIRST REDEMPTION DATE") shall occur on a date specified in the Redemption Election, which shall be not less than ninety (90) days after the date of the Redemption Election, and the second and third installments of such redemption shall occur on the first and second anniversaries, respectively, of the First Redemption Date. The Corporation shall redeem one-third of the outstanding shares of Senior Preferred Stock held by each holder on the First Redemption Date, one half of the outstanding shares of Senior Preferred Stock then held by each holder on the first anniversary thereof and the remaining shares on the second anniversary thereof. On each such redemption date, the holders shall surrender the certificate or certificates for the shares to be redeemed duly endorsed for transfer or with duly executed stock transfer powers sufficient to permit transfer attached, at the offices of the Corporation or of any transfer agent for the Senior Preferred Stock. The Corporation shall, as soon as practicable thereafter, issue and deliver to each holder a certificate or certificates for the balance of the shares not being redeemed. The redemption price of each share of Series A Preferred Stock shall be equal to (i) $1.00 (as adjusted for any stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such Senior Preferred Stock) plus all dividends declared but unpaid on such share on the

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applicable redemption date (the "SERIES A REDEMPTION AMOUNT") plus (ii) an additional amount computed like interest payable on the Series A Redemption Amount at the rate equal to simple interest of ten percent (10%) per annum from the date of issuance of such share of Senior Preferred Stock. The redemption price of each share of Series B Preferred Stock shall be equal to (i) $2.50 (as adjusted for any stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such Senior Preferred Stock) plus all dividends declared but unpaid on such share on the applicable redemption date (the "SERIES B REDEMPTION AMOUNT," each of the Series A Redemption Amount and the Series B Redemption Amount being sometimes hereinafter referred to as a "REDEMPTION AMOUNT") plus (ii) an additional amount computed like interest payable on the Series B Redemption Amount at the rate equal to simple interest of ten percent (10%) per annum from the date of issuance of such share of Senior Preferred Stock.

(b) Notice of redemption shall be sent by first class mail, postage prepaid, to each holder of record of the Senior Preferred Stock, not less than thirty days nor more than sixty days prior to the First Redemption Date, at the address of such holder as it appears on the books of the Corporation. Such notice shall set forth (i) the First Redemption Date, the dates of the second and third installments of such redemption, and the place of redemption; and (ii) the number of shares to be redeemed on each date of redemption and the redemption price calculated in accordance with Section 6(a) above, on each such date. The Corporation shall be obligated to redeem the Senior Preferred Stock on the dates and in the amounts set forth in the notice; provided, however, that any holder of Senior Preferred Stock who is not party to a Redemption Election may convert any or all of the shares owned by such holder into Common Stock in accordance with Section 2(d) at any time prior to the date of redemption of such shares. The Corporation, if advised before the close of business on the relevant redemption date by written notice from any holder of record of Senior Preferred Stock to be redeemed, shall credit against the number of shares of Senior Preferred Stock required to be redeemed from such holder, and shall not redeem, the number of shares of Senior Preferred Stock-which shall have been converted by such holder on or before such date and which shall not previously have been credited against any redemption.

(c) If, on or before a redemption date, the funds necessary for such redemption shall have been set aside by the Corporation and deposited with a bank or trust company, in trust for the pro rata benefit of the holders of the Senior Preferred Stock that has been called for redemption, then, notwithstanding that any certificates for shares that have been called for redemption shall not have been surrendered for cancellation, the shares represented thereby shall no longer be deemed outstanding from and after such redemption date, and all rights of holders of such shares so called for redemption shall forthwith, after such redemption date, cease and terminate with respect to such shares, excepting only the right to receive the redemption funds therefor to which they are entitled. Any interest accrued on funds so deposited and unclaimed by stockholders entitled thereto shall be paid to such stockholders at the time their respective shares are redeemed or to the Corporation at the time unclaimed amounts are paid to it. In case the holders of Senior Preferred Stock which shall have been called for redemption shall not, within one year after the final redemption date, claim the amounts so deposited with respect to the redemption thereof, any such bank or trust company shall, upon demand, pay over to the Corporation such unclaimed amounts and thereupon such bank or trust company shall be

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relieved of all responsibility in respect thereof to such holder and such holder shall look only to the Corporation for the payment thereof. Any funds so deposited with a bank or trust company which shall not be required for such redemption by reason of the exercise subsequent to the date of such deposit of the right of conversion of any shares or otherwise shall be returned to the Corporation forthwith.

(d) If the Corporation for any reason fails to redeem any of the shares of Senior Preferred Stock in accordance with Section 6(a) on or prior to the redemption dates determined in accordance with this Section 6, then, the Corporation shall become obligated to pay, in addition to the redemption price specified in Section 6(a), interest on the unpaid balance of such price, which shall accrue at a rate equal to the lesser of (i) one percent (1%) per month or (ii) the maximum interest rate allowable under applicable law, until such price is paid in full.

(e) If the funds of the Corporation legally available for redemption of shares of Senior Preferred Stock on a redemption date are insufficient to redeem the total number of shares of Senior Preferred Stock submitted for redemption, those funds which are legally available will be used to redeem the maximum possible number of whole shares ratably among the holders of such shares based on the total Redemption Amounts owed to such holders. The shares of Senior Preferred Stock not redeemed shall remain outstanding and entitled to all rights and preferences provided herein. At any time thereafter when additional funds of the Corporation are legally available for the redemption of such shares of Senior Preferred Stock, such funds will be used, at the end of the next succeeding fiscal quarter, to redeem the balance of such shares, or such portion thereof for which funds are then legally available.

Section 7. No Reissuance of Preferred Stock. No shares of Preferred Stock acquired by the Corporation by reason of redemption, purchase, conversion or otherwise shall be reissued, and all such shares shall be canceled, retired and eliminated from the shares which the Corporation shall be authorized to issue.

Section 8. Residual Rights. All rights accruing to the outstanding shares of the Corporation not expressly provided for to the contrary herein shall be vested in the Common Stock.

Section 9. Notices. All notices required or permitted to be sent pursuant to this Article FOURTH shall be deemed sufficient if contained in a written instrument and delivered in person or duly sent by first-class mail postage prepaid (other than in the case of notices to or from any non-U.S. resident) or by fax or DHL, Federal Express or other recognized express international courier service, addressed to the intended recipient at the recipient's address as it appears on the books of the Corporation."

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3. Pursuant to Section 228(a) of the General Corporation Law of the State of Delaware, the holders of outstanding shares of the Corporation having no less than the minimum number of votes that would be necessary to authorize or take such actions at a meeting at which all shares entitled to vote thereon were present and voted, consented to the adoption of the aforesaid amendments without a meeting, without a vote and without prior notice and that written notice of the taking of such actions has been given in accordance with
Section 228(e) of State of Delaware.

4. The amendment of the certificate of incorporation herein certified has been duly adopted in accordance with the provisions of Section 242 of the General Corporation Law of the State of Delaware.

Signed this 8th day of September 2003.

ALNYLAM HOLDING CO.

BY: /s/ JOHN MARAGANORE
    ----------------------
    Name: JOHN MARAGANORE
    Title: President & CEO

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State of Delaware Secretary of State Division of Corporations Delivered 01:41 PM 10/09/2003
FILED 01:13 PM 10/09/2003

SRV 030650919 - 3651907 FILE

CERTIFICATE OF AMENDMENT

OF

CERTIFICATE OF INCORPORATION

OF

ALNYLAM HOLDING CO.

Alnylam Holding Co., a Delaware corporation (hereinafter, the "CORPORATION"), hereby certifies as follows:

1. The name of the Corporation is Alnylam Holding Co. The date of filing of its original Certificate of Incorporation with the Delaware Secretary of State was May 8,2003.

2. The Certificate of Incorporation of the Corporation, as filed on May 8, 2003, as amended by the Certificate of Amendment, as filed on July 24, 2003 and the Certificate of Amendment, as filed on September 8, 2003 (collectively, the "CERTIFICATE OF INCORPORATION"), is hereby further amended by deleting the first paragraph of Article FOURTH thereof in its entirety and by substituting in lieu of said first paragraph of Article FOURTH the following new first paragraph of Article FOURTH:

"The total number of shares of all classes of stock which the Corporation has authority to issue is 57,011,480 shares, consisting of 34,739,392 shares of Common Stock, par value $.0001 per share (the "COMMON STOCK"), 3,000,010 shares of Series A Convertible Preferred Stock, par value $.0001 per share (the "SERIES A PREFERRED STOCK"), 16,672,078 shares of Series B Convertible Preferred Stock, $.0001 par value per share (the "SERIES B PREFERRED STOCK"), and 2,600,000 shares of Series C Convertible Preferred Stock, $.0001 par value per share (the "SERIES C PREFERRED STOCK"). The Series A Preferred Stock and Series B Preferred Stock are sometimes hereinafter collectively referred to as the "SENIOR PREFERRED STOCK." The Senior Preferred Stock and the Series C Preferred Stock are sometimes hereinafter collectively referred to as the "PREFERRED STOCK."

3. The Certificate of Incorporation is hereby further amended by deleting in its entirety Section 2(i)(i)(3) of Article FOURTH and by substituting in lieu of such section the following new Section 2(i)(i)(3) of Article FOURTH:

"(3) When any holder of shares of Series C Preferred Stock is entitled to exercise its right of first refusal (the "SERIES C RIGHT OF FIRST REFUSAL") as set forth in Section 3 of the Rights Agreement or
Section 16 of that certain Investor Rights Agreement, dated as of September 8, 2003, by and between the Corporation and Merck & Co., Inc. (the "SERIES C RIGHTS AGREEMENT"), as the case may be, with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities


convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series C Conversion Price in effect immediately prior to such issue or sale (a "SERIES C DILUTIVE ISSUANCE") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 3 of the Rights Agreement or Section 16 of the Series C Rights Agreement, as the case may be, in respect thereof and (y) the provisions of the Series C Right of First Refusal applicable to the particular Series C Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement or the Series C Rights Agreement, as the case may be, if such holder (either alone or with or through its partners, stockholders or affiliates) does not, by exercise of such holder's Series C Right of First Refusal, acquire at least such holder's Basic Amount (as defined in and calculated in accordance with Section 3.1 of the Rights Agreement or Section 16(a) of the Series C Rights Agreement, as the case may be) of New Securities (as defined in Section 3.2 of the Rights Agreement or Section 16(b) of the Series C Rights Agreement, as the case may be) in such Series C Dilutive Issuance, then each Non-Participating Series C Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series C Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series C Dilutive Issuance, at the Series C Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series C Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(3) shall be deemed to have waived with respect to each Non-Participating Series C Share (A) the reduction in the Series C Conversion Price of such Non-Participating Series C Share that would have otherwise resulted pursuant to Section 2(e) from such Series C Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series C Share pursuant to this
Section 2(i)(i)(3), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES C SHARES" shall mean such number of shares of Series C Preferred Stock of a holder that is determined by multiplying the total number of shares of Series C Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement or Section 16(i) of the Series C Rights Agreement, as the case may be) in the Series C Dilutive Issuance, and the denominator of which is such holder's Basic Amount."

4. The Certificate of Incorporation is hereby further amended by deleting in its entirety Section 2(i)(ii) of Article FOURTH and by substituting in lieu of such section the following new Section 2(i)(ii) of Article FOURTH:

"(ii)(1) Notwithstanding the foregoing, in the event that the Corporation issues equity securities in a transaction that is both a Series B Dilutive Issuance and a Series C Dilutive Issuance (the "SERIES B/C DILUTIVE ISSUANCE") and a holder of both Series B Preferred Stock and Series C Preferred Stock does not acquire at least such holder's Basic Amount of New Securities, then the shares of Preferred Stock of such holder that shall be

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converted into shares of Common Stock in accordance with this Section 2(i) shall be allocated pro rata to such holder's Series B Preferred Stock and Series C Preferred Stock. For purposes of clarity, in the event of a Series B/C Dilutive Issuance, (A) the term "NON-PARTICIPATING SERIES B SHARES" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B/C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series B/C Dilutive Issuance, and the denominator of which is such holder's Basic Amount and (B) the term "NON-PARTICIPATING SERIES C SHARES" shall mean such number of shares of Series C Preferred Stock of a holder that is determined by multiplying the total number of shares of Series C Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B/C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series B/C Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(2) Notwithstanding the foregoing, in the event that the Corporation issues equity securities in a transaction that is a Series A Dilutive Issuance, a Series B Dilutive Issuance and a Series C Dilutive Issuance (the "SERIES A/B/C DILUTIVE ISSUANCE") and a holder of any combination of (i) Series A Preferred Stock, Series B Preferred Stock and Series C Preferred Stock, (ii) Series A Preferred Stock and Series B Preferred Stock or (iii) Series A Preferred Stock and Series C Preferred Stock does not acquire at least such holder's Basic Amount of New Securities, then the shares of Preferred Stock of such holder that shall be converted into shares of Common Stock in accordance with this
Section 2(i) shall be allocated pro rata to such holder's Series A Preferred Stock, Series B Preferred Stock and/or Series C Preferred Stock. For purposes of clarity, in the event of a Series A/B/C Dilutive Issuance, (A) the term "NON-PARTICIPATING SERIES A SHARES" shall mean such number of shares of Series A Preferred Stock of a holder that is determined by multiplying the total number of shares of Series A Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B/C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B/C Dilutive Issuance, and the denominator of which is such holder's Basic Amount, (B) the term "NON-PARTICIPATING SERIES B SHARES" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B/C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B/C Dilutive Issuance, and the denominator of which is such holder's Basic Amount and (C) the term "NON-PARTICIPATING SERIES C SHARES" shall mean such number of shares of Series C Preferred Stock of a holder that is determined by multiplying the total number of shares of Series C Preferred Stock held by such holder by a fraction, the

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numerator of which is such holder's Basic Amount in such Series A/B/C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B/C Dilutive Issuance, and the denominator of which is such holder's Basic Amount."

5. Pursuant to Section 228(a) of the General Corporation Law of the State of Delaware, the holders of outstanding shares of the Corporation having no less than the minimum number of votes that would be necessary to authorize or take such actions at a meeting at which all shares entitled to vote thereon were present and voted, consented to the adoption of the aforesaid amendments without a meeting, without a vote and without prior notice and that written notice of the taking of such actions has been given in accordance with
Section 228(e) of the General Corporation Law of the State of Delaware.

6. The amendment of the certificate of incorporation herein certified has been duly adopted in accordance with the provisions of Section 242 of the General Corporation Law of the State of Delaware.

Signed this 9th day of October, 2003.

ALNYLAM HOLDING CO.

By: /s/ JOHN G. CONLEY
    -------------------
    Name: JOHN G. CONLEY
    Title: CFO

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CERTIFICATE OF AMENDMENT

OF

CERTIFICATE OF INCORPORATION

OF

ALNYLAM HOLDING CO.

Pursuant to Section 242 of the

General Corporation Law of the State of Delaware


Alnylam Holding Co. (hereinafter called the "Corporation"), organized and existing under and by virtue of the General Corporation Laws of the State of Delaware, does hereby certify as follows:

At a meeting of the Board of Directors of the Corporation a resolution was duly adopted, pursuant to Section 242 of the General Corporation Law of the State of Delaware, setting forth amendments to the Certificate of Incorporation of the Corporation and declaring said amendments to be advisable. The stockholders of the Corporation duly adopted said amendments by written consent in accordance with Sections 228 and 242 of the General Corporation Law of the State of Delaware. Said amendments have been duly adopted in accordance with
Section 242 of the General Corporation Law of the State of Delaware. The resolution setting forth the amendments is as follows:

RESOLVED: That the Certificate of Incorporation of the Corporation, as amended (the "Certificate of Incorporation") be further amended as follows:

(1) Article FIRST of the Certificate of Incorporation is deleted in its entirety and the following is inserted in lieu thereof:

"FIRST: The name of the Corporation is Alnylam Pharmaceuticals, Inc."

(2) Section 2(b)(i) of Article FOURTH of the Certificate of Incorporation is deleted in its entirety and the following is inserted in lieu thereof:

"(i) Each share of Preferred Stock shall automatically be converted into shares of Common Stock at the applicable Conversion Price then in effect upon the closing of a firm commitment underwritten public offering pursuant to an effective registration statement under the Securities Act of 1933, as amended, covering the offer and sale of Common Stock for the account of the Corporation to the public with gross proceeds to the Corporation of not less than $25,000,000 (a "Qualified Public Offering"), in the event of which offering the person(s) entitled to receive the Common Stock issuable upon such conversion of the Preferred Stock shall not be deemed to have converted such Preferred Stock until the closing of such offering."

(3) Section 2(e)(i)(4)(B) of Article FOURTH of the Certificate of Incorporation is deleted in its entirety and the following is inserted in lieu thereof:


"(B) up to 4,407,500 shares of Common Stock issued or issuable to employees, consultants or directors of the Corporation pursuant to a stock purchase or stock option plan or other employee stock bonus arrangement approved by a majority of the Corporation's Board of Directors, which majority includes at least two of the Preferred Stock Directors (as hereinafter defined), (such vote, a "Majority Directors Vote"); and provided that such number may be adjusted upward by a Majority Directors Vote;"

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IN WITNESS WHEREOF, the Corporation has caused this Certificate of Amendment to be signed by its President and Chief Executive Officer on this 26th day of February 2004.

ALNYLAM HOLDING CO.

By: /s/ John M. Maraganore
    -------------------------------------
    John M. Maraganore
    President and Chief Executive Officer

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CERTIFICATE OF AMENDMENT

OF

CERTIFICATE OF INCORPORATION

OF

ALNYLAM PHARMACEUTICALS, INC.

Alnylam Pharmaceuticals, Inc., a Delaware corporation (hereinafter, the "Corporation"), hereby certifies as follows:

1. The name of the Corporation is Alnylam Pharmaceuticals, Inc. The date of filing of its original Certificate of Incorporation with the Delaware Secretary of State was May 8, 2003.

2. The Certificate of Incorporation of the Corporation, as filed on May 8, 2003, as amended by the Certificate of Amendment, as filed on July 24, 2003, the Certificate of Amendment, as filed on September 8, 2003, the Certificate of Amendment, as filed on October 9, 2003, and the Certificate of Amendment, as filed on February 26, 2004 (collectively, the "CERTIFICATE OF INCORPORATION") is hereby further amended by deleting Article FOURTH thereof in its entirety and by substituting in lieu of said Article FOURTH the following new Article FOURTH:

"FOURTH: The total number of shares of all classes of stock which the Corporation has authority to issue is 54,943,580 shares, consisting of 32,000,000 shares of Common Stock, par value $.0001 per share (the "COMMON STOCK"), 3,000,010 shares of Series A Convertible Preferred Stock, par value $.0001 per share (the "SERIES A PREFERRED STOCK"), 16,672,078 shares of Series B Convertible Preferred Stock, $.0001 par value per share (the "SERIES B PREFERRED STOCK"), 1,604,825 shares of Series C Convertible Preferred Stock, $.0001 par value per share (the "SERIES C PREFERRED STOCK") and 1,666,667 shares of Series D Convertible Preferred Stock, $.0001 par value per share (the "SERIES D PREFERRED STOCK"). The Series A Preferred Stock and Series B Preferred Stock are sometimes hereinafter collectively referred to as the "SENIOR PREFERRED STOCK." The Senior Preferred Stock, the Series C Preferred Stock and the Series D Preferred Stock are sometimes hereinafter collectively referred to as the "PREFERRED STOCK."

The powers, preferences and rights, and the qualifications, limitations or restrictions thereof in respect of each class or series of stock of the Corporation shall be as follows:

Section 1. Liquidation Rights.

(a) Liquidation Payments.

(i) In the event of any liquidation, dissolution or winding up of the affairs of the Corporation, whether voluntary or involuntary, the holders of the then outstanding shares of Senior Preferred Stock shall be entitled to be paid first out of the assets of the Corporation available for distribution to holders of the Corporation's capital stock of all


classes an amount equal to (a) in the case of the Series A Preferred Stock, $1.00 per share (subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Senior Preferred Stock) and (b) in the case of the Series B Preferred Stock, $2.50 per share (subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Senior Preferred Stock), plus (in the case of all series of Senior Preferred Stock) all dividends declared thereon but unpaid and any and all other amounts owing with respect to such shares, as of and including the date full payment shall be tendered to the holders of the Senior Preferred Stock with respect to such liquidation, dissolution or winding up. Such amount is sometimes hereinafter referred to as the "SENIOR PREFERENCE AMOUNT."

If the assets of the Corporation shall be insufficient to permit the payment in full to the holders of the Senior Preferred Stock of the entire Senior Preference Amount so distributable to them, then the entire assets of the Corporation available for such distribution shall be distributed ratably among the holders of the Senior Preferred Stock in proportion to the full. Senior Preference Amount each such: holder is otherwise entitled to receive under this
Section 1(a)(j).

No payment shall be made with respect to the Series C Preferred: Stock or Common Stock unless and until full payment has been made to the holders of the Senior Preferred Stock of the full Senior Preference Amount.

(ii) After all payments shall have been made in full to both the holders of the Senior Preferred Stock as contemplated by
Section 1(a)(i) above and to the holders of any class of equity securities that is senior to or pari passu with the Senior Preferred Stock (the "ADDITIONAL SENIOR PREFERRED STOCK"), or funds necessary for such payments shall have been set aside by the Corporation in trust for the account of holders of Senior Preferred Stock and Additional Senior Preferred Stock so as to be available for such payments, the holders of the then outstanding shares of Series C Preferred Stock and the holders of the then outstanding Series D Preferred Stock shall be entitled to receive out of the remaining assets available for distribution (a) an amount equal to the price per share paid for the Series C Preferred Stock in the case of the Series C Preferred Stock and (ii) an amount equal to the price per share paid for the Series D Preferred Stock in the case of the Series D Preferred Stock (in each case, subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such series of Preferred Stock), plus all dividends declared thereon but unpaid and any and all other amounts owing with respect to such shares, as of and including the date full payment shall be tendered to the holders of the Series C Preferred Stock and Series D Preferred Stock with respect to such liquidation, dissolution or winding up. Such amount is sometimes hereinafter referred to as the "SERIES C PREFERENCE AMOUNT" in the case of the Series C Preferred Stock and as the "SERIES D PREFERENCE AMOUNT" in the case of the Series D Preferred Stock.

(iii) After all payments shall have been made in full to the holders of the Senior Preferred Stock, the Additional Senior Preferred Stock, the Series C Preferred Stock and the Series D Preferred Stock as contemplated by Section 1(a)(i) above and Section 1(a)(ii) above, respectively, or funds necessary for such payments shall have been set aside by the Corporation in trust for the account of holders of Senior Preferred Stock, the

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Additional Senior Preferred Stock, the Series C Preferred Stock and the Series D Preferred Stock so as to be available for such payments, remaining assets available for distribution shall be distributed among the holders of the Common Stock ratably in proportion to the number of shares of Common Stock then held by them.

(iv) Upon any such liquidation, dissolution or winding up, any holder of Preferred Stock may elect to receive, in lieu of the Preference Amount otherwise payable to it pursuant to Section 1.1(a)(i) or
Section 1(a)(ii), an amount per share of Preferred Stock as would have been payable had such share been converted to Common Stock immediately prior to such liquidation, dissolution or winding up, plus all dividends declared but unpaid on each such share of Preferred Stock to and including the date full payment shall be tendered to the holders of the Preferred Stock with respect to such liquidation, dissolution or winding up.

(v) Upon conversion of shares of Preferred Stock into shares of Common Stock pursuant to Section 2 below, the holder of such Common Stock shall not be entitled to any preferential payment or distribution in case of any liquidation, dissolution or winding up, but shall share ratably in any distribution of the asset of the Corporation to all the holders of Common Stock.

(vi) The amounts payable with respect to shares of Preferred Stock under this Section 1(a) are sometimes hereinafter referred to as "LIQUIDATION PAYMENTS."

(b) Distributions Other than Cash. The amount deemed distributed to the holders of Preferred Stock upon any liquidation, dissolution, or winding-up (including any transaction treated as such pursuant to Section
1(c)), and the value of the consideration received by the Corporation for the issue of any Additional Shares of Common Stock (as defined below), if distributed or received, as the case may be, in any form of property (tangible or intangible) other than cash shall be the fair market value of such property. The term "FAIR MARKET VALUE" or "FAIR VALUE" means, with respect to any security, its Market Price (as defined below), and with respect to any property or assets other than cash or securities, the fair value thereof determined in good faith jointly by the Corporation (including the approval of a director nominated by holders of Common Stock) and the Requisite Holders (as defined below); provided, however, that if the parties are not able to agree within a reasonable period of time (not to exceed thirty (30) days) what amount constitutes fair value, then the fair value will be determined pursuant to the Arbitration Procedure (as defined below). The term "REQUISITE HOLDERS" means the holders of at least two-thirds in voting power of the then outstanding Preferred Stock. The term "MARKET PRICE" means, as to any security, the average of the closing prices of such security's sales on all United States securities exchanges on which such security may at the time be listed, or, if there have been no sales on any such exchange on any day, the average of the highest bid and lowest asked prices on all such exchanges at the end of such day, or, if on any day such security is not so listed, the average of the representative bid and asked prices quoted in the NASDAQ System as of 4:00 P.M., New York time, on such day, or, if on any day such security is not quoted in the NASDAQ System, the average of the highest bid and lowest asked prices on such day in the domestic over-the-counter market as reported by the National Quotation Bureau, Incorporated, or any similar or successor organization, in each such case averaged over a period of 30 days consisting of the thirty day period ending three days prior to the date as of which Market Price is being determined. If at any time such security is not listed on any domestic securities exchange

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or quoted in the NASDAQ System or the domestic over-the-counter market, the Market Price of such security shall be the fair value thereof as determined in good faith jointly by the Corporation (including the approval of a director nominated by holders of Common Stock) and the Requisite Holders; provided, however, that if such parties are not able to agree within a reasonable period of time (not to exceed ten (10) days) what amount constitutes the Market Price, then the Market Price shall be determined pursuant to the Arbitration Procedure. The term "ARBITRATION PROCEDURE" means the following procedure to determine the fair value or the Market Price, as applicable (the "VALUATION AMOUNT"). The valuation amount shall be determined by an investment banking firm of national recognition, which firm shall be reasonably acceptable to the Corporation and the Requisite Holders. If the Corporation and the Requisite Holders are unable to agree upon an acceptable investment banking firm within ten (10) days after the date either party proposed that one be selected, the investment banking firm will be selected by an arbitrator located in the City of Boston, Massachusetts, selected by the American Arbitration Association (or if such organization ceases to exist, the arbitrator shall be chosen by a court of competent jurisdiction). The arbitrator shall select the investment banking firm (within ten (10) days of his appointment) from a list, jointly prepared by the Corporation and the Requisite Holders, of not more than six investment banking firms of national standing in the United States, of which no more than three may be named by the Corporation and no more than three may be named by the Requisite Holders. The arbitrator may consider, within the ten day period allotted, arguments from the parties regarding which investment banking firm to choose, but the selection by the arbitrator shall be made in its sole discretion from the list of six. The determination of the final valuation amount by such investment banking firm shall be final and binding upon the parties. The Corporation shall pay one-half of the fees and expenses of the investment banking firm and arbitrator (if any) used to determine the valuation amount and the holders of the Preferred Stock shall pay the other half of such fees and expenses (allocated among them pro rata based on the number of shares of Preferred Stock, on an as-converted basis, then held by each of them). If required by any such investment banking firm or arbitrator, the Corporation and the holders of the Preferred Stock shall execute a retainer and engagement letter containing reasonable term and conditions, including customary provisions concerning the rights of indemnification and contribution by the Corporation and the holders of the Preferred Stock in favor of such investment banking firm or arbitrator and its officers, directors, partners, employees, agents and affiliates.

(c) Merger as Liquidation, etc. The merger or consolidation of the Corporation into or with another corporation (except one in which the holders of capital stock of the Corporation immediately prior to such merger or consolidation continue to hold a majority in voting power of the capital stock of the surviving corporation, in which case the provisions of
Section 2(h) shall apply), or the sale of all or substantially all of the assets of the Corporation, shall be deemed to be a liquidation, dissolution or winding up of the affairs of the Corporation for purposes of this Section 1 with respect to the Preferred Stock, unless the holders of at least two-thirds in voting power of the then outstanding shares of Preferred Stock elect to the contrary; such election to be made by giving notice thereof to the Corporation at least three days before the effective date of such event. If such notice is given with respect to the Preferred Stock, the provisions of Section 2(h) shall apply. Unless such election is made with respect to the Preferred Stock, any amounts received by the holders of Preferred Stock as a result of such merger or consolidation shall be deemed to be applied toward, and all consideration received by the

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Corporation in such asset sale together with all other available assets of the Corporation shall be distributed toward, the Liquidation Payments.

(d) Notice. In the event the Corporation shall propose to undertake any liquidation, dissolution or winding up of the affairs of the Corporation (including any merger, consolidation or sale of assets which may be deemed to be a liquidation, dissolution or winding up of the affairs of the Corporation under Section 1(c)), the Corporation shall, within ten (10) days after the date the Board of Directors approves such action or twenty (20) days prior to any stockholders' meeting called to approve such action, whichever is earlier, give each holder of Preferred Stock initial written notice of the proposed action. Such initial written notice shall describe the material terms and conditions of such proposed action, including a description of the stock, cash and property to be received by the holders of the Preferred Stock and of Common Stock upon consummation of the proposed action and the proposed date of delivery thereof. If any material change in the facts set forth in the initial notice shall occur, the Corporation shall promptly give each holder of Preferred Stock written notice of such material change. The Corporation shall not consummate any such proposed liquidation, dissolution or winding up before the expiration of thirty (30) days after the mailing of the initial notice or twenty
(20) days after the mailing of any subsequent written notice, whichever is later, provided, that any such 30-day or 20-day period may be shortened or waived upon the written consent of the holders of at least two-thirds in voting power of the outstanding shares of Preferred Stock. Any holder of outstanding shares of Preferred Stock may waive any notice required by this Section by written instrument specifically indicating such waiver.

Section 2. Conversion. The holders of Preferred Stock shall have conversion rights as follows (the "CONVERSION RIGHTS"):

(a) Right to Convert Conversion Price. Each share of Preferred Stock shall be convertible, without the payment of any additional consideration by the holder thereof and at the option of the holder thereof; at any time after the date of issuance of such share, at the office of the Corporation or any transfer agent for the Preferred Stock, into such number of fully paid and nonassessable shares of Common Stock as is determined in accordance with the following:

(i) in the case of the Series A Preferred Stock, by dividing $1.00 by the Series A Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series A Preferred Stock without the payment of any additional consideration by the holder thereof (the "SERIES A CONVERSION PRICE") shall initially be $1.00 per share of Common Stock. Such initial Series A Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series A Preferred Stock is convertible, as hereinafter provided.

(ii) in the case of the Series B Preferred Stock, by dividing $2.50 by the Series B Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series B Preferred Stock without the payment of any additional consideration by the holder thereof (the "SERIES B CONVERSION PRICE") shall initially be $2.50 per share of

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Common Stock. Such initial Series B Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series B Preferred Stock is convertible, as hereinafter provided.

(iii) in the case of the Series C Preferred Stock, by dividing the price per share paid for the Series C Preferred Stock by the Series C Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series C Preferred Stock without the payment of any additional consideration by the holder thereof (the "SERIES C CONVERSION PRICE") shall initially be the price per share paid for the Series C Preferred Stock per share of Common Stock. Such initial Series C Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series C Preferred Stock is convertible, as hereinafter provided.

(iv) in the case of the Series D Preferred Stock, by dividing the price per share paid for the Series D Preferred Stock by the Series D Conversion Price, determined as hereinafter provided, in effect at the time of conversion. The Conversion Price at which shares of Common Stock shall be deliverable upon conversion of Series D Preferred Stock without the payment of any additional consideration by the holder thereof (the "SERIES D CONVERSION PRICE") shall initially be the price per share paid for the Series D Preferred Stock per share of Common Stock. Such initial Series D Conversion Price shall be subject to adjustment, in order to adjust the number of shares of Common Stock into which the Series D Preferred Stock is convertible, as hereinafter provided.

Each of the Series A Conversion Price, the Series B Conversion Price, the Series C Conversion Price and the Series D Conversion Price is sometimes hereinafter referred to as a "CONVERSION PRICE."

The right of conversion with respect to any shares of Senior Preferred Stock which shall have been called for redemption under Section 6 hereof shall terminate at the close of business on the day fixed for redemption unless the Corporation shall default in the payment of the redemption price, in which case the right of conversion with respect to such shares shall continue unless and until such redemption price is paid in full.

(b) Automatic Conversion.

(i) Each share of Preferred Stock shall automatically be converted into shares of Common Stock at the applicable Conversion Price then in effect upon the closing of a firm commitment underwritten public offering pursuant to an effective registration statement under the Securities Act of 1933, as amended, covering the offer and sale of Common Stock for the account of the Corporation to the public with gross proceeds to the Corporation of not less than $25,000,000 (a "QUALIFIED PUBLIC OFFERING"), in the event of which offering the person(s) entitled to receive the Common Stock issuable upon such conversion of the Preferred Stock shall not be deemed to have converted such Preferred Stock until the closing of such offering.

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(ii) Each share of Preferred Stock shall automatically be converted into shares of Common Stock at the applicable Conversion Price then in effect upon the written election of the holders of not less than two-thirds in voting power of the then outstanding shares of Preferred Stock to require such mandatory conversion.

(c) Mechanics of Automatic Conversions. Upon the occurrence of an event specified in Section 2(b), the Preferred Stock of the applicable series shall be converted automatically without any further action by the holders of such shares and whether or not the certificates representing such shares are surrendered to the Corporation or its transfer agent; provided, however, that all holders of shares of Preferred Stock being converted shall be given written notice of the occurrence of the event specified in Section 2(b) triggering such conversion, including the date such event occurred (the "MANDATORY CONVERSION DATE"), and the Corporation shall not be obligated to issue certificates evidencing the shares of Common Stock issuable upon such conversion unless certificates evidencing such shares of Preferred Stock being converted are either delivered to the Corporation or its transfer agent, or the holder notifies the Corporation or any transfer agent that such certificates have been lost, stolen, or destroyed and executes an agreement satisfactory to the Corporation (which agreement will not require a bond) to indemnify the Corporation from any loss incurred by it in connection therewith. On the Mandatory Conversion Date, all rights with respect to the Preferred Stock so converted shall terminate, except any of the rights of the holder thereof, upon surrender of the holder's certificate or certificates therefor, to receive certificates for the number of shares of Common Stock into which such Preferred Stock has been converted, together with cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock converted to and including the time of conversion. Upon the automatic conversion of the Preferred Stock, the holders of such Preferred Stock shall surrender the certificates representing such shares at the office of the Corporation or of its transfer agent. If so required by the Corporation, certificates surrendered for conversion shall be endorsed or accompanied by written instrument or instruments of transfer, in form satisfactory to the Corporation, duly executed by the registered holder or by the holder's attorney duly authorized in writing. Upon surrender of such certificates there shall be issued and delivered to such holder, or to such holder's nominee or nominees promptly at such office, a certificate or certificates for the number of shares of Common Stock into which the shares of Preferred Stock surrendered were convertible on the date on which such automatic conversions occurred, together with cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock converted to and including the time of conversion. Upon the automatic conversion of the Preferred Stock, all shares of Preferred Stock being converted by any holder thereof shall be aggregated for the purpose of determining the number of shares of Common Stock to which such holder shall be entitled, and no fractional share of Common Stock shall be issued. In lieu of any fractional share to which the holder would otherwise be entitled, the Corporation shall pay cash equal to such fraction multiplied by the fair market value of the Common Stock on the Mandatory Conversion Date, as reasonably determined by the Board of Directors in good faith (notwithstanding the provisions of Section 1(b)).

(d) Mechanics of Optional Conversions. Before any holder of Preferred Stock shall be entitled to convert the same into shares of Common Stock, the holder shall surrender the certificate or certificates therefor at the office of the Corporation or of any

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transfer agent for the Preferred Stock, and shall give written notice to the Corporation at such office that the holder elects to convert the same and shall state therein the holder's name or the name or names of the holder's nominees in which the holder wishes the certificate or certificates for shares of Common Stock to be issued. On the date of conversion, all rights with respect to the Preferred Stock so converted shall terminate, except any of the rights of the holder thereof, upon surrender of the holder's certificate or certificates therefor, to receive certificates for the number of shares of Common Stock into which such Preferred Stock has been converted and cash in an amount equal to all dividends declared but unpaid on, and any and all other amounts owing with respect to, the shares of Preferred Stock being converted to and including the time of conversion. If so required by the Corporation, certificates surrendered for conversion shall be endorsed or accompanied by written instrument or instruments of transfer, in form satisfactory to the Corporation, duly executed by the registered holder or by the holder's attorney duly authorized in writing. Upon the optional conversion of the Preferred Stock of any series, all shares of Preferred Stock being converted by any holder thereof shall be aggregated for the purpose of determining the number of shares of Common Stock to which such holder shall be entitled, and no fractional share of Common Stock shall be issued. In lieu of any fractional share to which the holder would otherwise be entitled, the Corporation shall pay cash equal to such fraction multiplied by the fair market value of the Common Stock on the date of conversion, as reasonably determined by the Board of Directors in good faith (notwithstanding the provisions of Section 1(b)). The Corporation shall, promptly after surrender of the certificate or certificates for conversion, issue and deliver at such office to such holder of Preferred Stock, or to the holder's nominee or nominees, a certificate or certificates for the number of shares of Common Stock to which the holder shall be entitled as aforesaid; together with cash in lieu of any fraction of a share and cash in an amount equal to all dividends declared but unpaid thereon and any and all other amounts owing with respect thereto at such time. Unless otherwise specified by the holder in the written notice of conversion, such conversion shall be deemed to have been made immediately prior to the close of business on the date of such surrender of the shares of Preferred Stock to be converted, and the person or persons entitled to receive the shares of Common Stock issuable upon conversion shall be treated for all purposes as the record holder or holders of such shares of Common Stock on such date.

(e) Adjustments to Conversion Price for Diluting Issues.

(i) Special Definitions. For purposes of this
Section 2(e); the following definitions shall apply:

(1) "OPTION" shall mean rights, options or warrants to subscribe for, purchase or otherwise acquire either Common Stock or Convertible Securities.

(2) "CONVERTIBLE SECURITIES" shall mean any evidences of indebtedness, shares of capital stock (other than Common Stock) or other securities directly or indirectly convertible into or exchangeable for Common Stock.

(3) "ADDITIONAL SHARES OF COMMON STOCK" shall mean all shares of Common Stock issued (or, pursuant to Section 2(e)(iii), deemed to be issued) by the Corporation after March 11, 2004 (the "Baseline Date"), other than:

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(A) shares of Common Stock issued or issuable upon conversion of shares of Preferred Stock;

(B) up to 4,407,500 shares of Common Stock issued or issuable to employees, consultants or directors of the Corporation pursuant to a stock purchase or stock option plan or other employee stock bonus arrangement approved by a majority of the Corporation's Board of Directors, which Majority includes at least two of the Preferred Stock Directors (as hereinafter defined), (such vote, a "MAJORITY DIRECTORS VOTE"); and provided that such number may be adjusted upward by a Majority Directors Vote;

(C) shares of Series D Preferred Stock issued or issuable to Isis Pharmaceuticals, Inc. (or affiliates thereof);

(D) securities issued in connection with capital leases, bank financing or other similar transactions with a non-equity financing purpose, in each case as approved by a Majority Directors Vote;

(E) securities issued in connection with licensing or strategic alliance transactions, in each case as approved by a Majority Directors Vote;

(F) securities issued pursuant to the acquisition of another corporation or other entity by the Corporation by merger, purchase of substantially all of the assets, or other reorganization whereby the Corporation acquires not less than 51% of the voting power of such corporation or other entity in a transaction approved by a Majority Directors Vote;

(G) up to 16,328 shares of Series B Preferred Stock issued to Garching Innovation GmbH ("GARCHING"), Massachusetts Institute of Technology ("MIT"), Whitehead Institute for Biomedical Research ("WHITEHEAD INSTITUTE") and Max-Planck-Gesellschaft zur Foerderung der Wissonschaften e.V ("MAX PLANCK") pursuant to license agreements between such entities and Alnylam; and

(H) shares of Common Stock issued in connection with a Qualified Public Offering.

(ii) No Adjustment of Conversion Price. Except set forth in Section 2(e)(vi), no adjustment in the number of shares of Common Stock into which any series of Preferred Stock is convertible shall be made, by adjustment in the applicable Conversion Price for such series in respect of the issuance of Additional Shares of Common Stock, (a) unless the consideration per share for an Additional Share of Common Stock (determined pursuant to Section
2(e)(v)) issued or deemed to be issued by the Corporation is less than the applicable Conversion Price for such series in effect on the date of, and immediately prior to the issue of such Additional Shares of Common Stock or (b) if prior to such issuance or within twenty (20) days thereafter the Corporation receives notice from the holders of at least two-thirds of the outstanding shares of such series of Preferred Stock that no such adjustment in the Conversion Price for such series shall be made.

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(iii) Issue of Securities Deemed Issue of Additional Shares of Common Stock.

(1) Options and Convertible Securities. In the event the Corporation at any time or from time to time after the Baseline Date shall issue any Options (excluding for all purposes of this Section
2(e)(iii)(1) Options excluded from the definition of Additional Shares of Common Stock in Section 2(e)(i)(4)(B)) or Convertible Securities or shall fix a record date for the determination of holders of any class of securities entitled to receive any such Options or Convertible Securities, then the maximum number of shares (as set forth in the instrument relating thereto without regard to any provisions contained therein for a subsequent adjustment of such number) of Common Stock issuable upon the exercise of such Options or, in the case of Convertible Securities and Options therefor, the conversion or exchange of such Convertible Securities, shall be deemed to be Additional Shares of Common Stock issued as of the time of such issue or, in case such a record date shall have been fixed, as of the close of business on such record date, and the Conversion Price of any such series of Preferred Stock shall be adjusted accordingly; provided, that in any such case in which Additional Shares of Common Stock are deemed to be issued:

(A) no further adjustment in the Conversion Price of any such series of Preferred Stock shall be made upon the subsequent issue of Convertible Securities or shares of Common Stock upon the exercise of such Options or conversion or exchange of such Convertible Securities;

(B) if such Options or Convertible Securities by their terms provide, with the passage of time or otherwise, for any increase in the consideration payable to the Corporation, or decrease in the number of shares of Common stock issuable, upon the exercise, conversion or exchange thereof, the Conversion Price of any such series of Preferred Stock computed upon the original issue thereof (or upon the occurrence of a record date with respect thereto), and any subsequent adjustments based thereon, shall, upon any such increase or decrease becoming effective, be recomputed to reflect such increase or decrease insofar as it affects such Options or the rights of conversion or exchange under such Convertible Securities;

(C) upon the expiration of any such Options or any rights of conversion or exchange under such Convertible Securities which shall not have been exercised, the Conversion price of any such series of Preferred Stock computed upon the original issue thereof (or upon the occurrence of a record date with respect thereto), and any subsequent adjustments based thereon, shall, upon such expiration, be recomputed as if:

(I) in the case of Convertible Securities or Options for Common Stock the only Additional Shares of Common Stock issued were the shares of Common Stock, if any, actually issued upon the exercise of such Options or the conversion or exchange of such Convertible Securities and the consideration received therefor was the consideration actually received by the Corporation for the issue of all such Options, whether at not exercised, plus the consideration actually received by the Corporation upon such exercise, or for the issue of all such Convertible Securities which

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were actually converted or exchanged, plus the additional consideration, if any, actually received by the Corporation upon such conversion or exchange; and

(II) in the case of Options for Convertible Securities only the Convertible Securities, if any, actually issued upon the exercise thereof were issued at the time of issue of such Options, and the consideration received by the Corporation for the Additional Shares of Common Stock deemed to have been then issued was the consideration actually received by the Corporation for the issue of all such Options, whether or not exercised, plus the consideration deemed to have been received by the Corporation (determined pursuant to Section 2(e)(v)) upon the issue of the Convertible Securities with respect to which such Options were actually exercised;

(D) no readjustment pursuant to clause (B) or (C) above shall have the effect of increasing the Conversion Price of any such series of Preferred Stock to an amount which exceeds the lower of (i) the Conversion Price of any such series of Preferred Stock immediately prior to adjustment on the original adjustment date, or (ii) the Conversion Price of any such series of Preferred Stock that would have resulted from any issuance of Additional Shares of Common Stock between the original adjustment date and such readjustment date;

(E) if such record date shall have been fixed and such Options or Convertible Securities are not issued on the date fixed therefor, the adjustment previously made in the Conversion Price of any such series of Preferred Stock which became effective on such record date shall be canceled as of the close of business on such record date, and thereafter the Conversion Price of any such series of Preferred Stock shall be adjusted pursuant to this
Section 2(e)(iii) as of the actual date of their issuance.

(2) Stock Dividends Stock Distributions and Subdivisions. In the event the Corporation at any time or from time to time after the Baseline Date shall declare or pay any dividend or make any other distribution on the Common Stock payable in Common Stock or effect a subdivision of the outstanding shares of Common Stock (by reclassification or otherwise than by payment of a dividend in Common Stock), then and in any such event, Additional Shares of Common Stock shall be deemed to have been issued with respect to such series of Preferred Stock:

(A) in the case of any such dividend or distribution, immediately after the close of business on the record date for the determination of holders of any class of securities entitled to receive such dividend or distribution, or

(B) in the case of any such subdivision, at the close of business on the date immediately prior to the date upon which such corporate action becomes effective.

If such record date shall have been fixed and no part of such dividend or distribution shall have been paid on the date fixed therefor, the adjustment previously made in the Conversion Price of any such series of Preferred Stock which became effective on such record date shall be canceled as of the close of business on such record date, and thereafter the Conversion Price of such series

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of Preferred Stock shall be adjusted pursuant to this Section 2(e)(iii) as of the time of actual payment of such dividend or distribution.

(iv) Adjustment of Conversion Price Upon Issuance of Additional Shares of Common Stock.

(1) Series A Preferred Stock and Series B Preferred Stock. In the event that at any time or from time to time after the Baseline Date the Corporation shall issue Additional Shares of Common Stock (including, without limitation, Additional Shares of Common Stock deemed to be issued pursuant to Section 2(e)(iii)(1) but excluding Additional Shares of Common Stock deemed to be issued pursuant to Section 2(e)(iii)(2), which event is dealt with in Section 2(e)(vi)(1)), without consideration or for a consideration per share less than the Series A Conversion Price or the Series B Conversion Price in effect on the date of and immediately prior to such issue, then and in such event, such Series A Conversion Price or Series B Conversion Price, as the case may be, shall be reduced, concurrently with such issue, to a price (calculated to the nearest one tenth of one cent) determined in accordance with the following formula:

(P1) (Q1) + (P2) (Q2)

NCP = ---------------------
Q1 + Q2

where:

         NCP =        New Series A Conversion Price or Series B
                      Conversion Price, as applicable;

         P1  =        Series A Conversion Price or Series B
                      Conversion Price, as applicable, in effect
                      immediately prior to new issue;

         Q1 =         Number of shares of Common Stock outstanding,
                      or deemed to be outstanding as set forth below,
                      immediately prior to such issue;

         P2 =         Price per share received by the Corporation upon
                      such issue;

         Q2 =         Number of shares of Common Stock issued, or
                      deemed to have been issued, in the subject
                      transaction;

Provided, that for the purpose of this Section 2(e)(iv), all shares of Common Stock issuable upon conversion or exercise of Options or Convertible Securities (including without limitation shares of Preferred Stock) outstanding immediately prior to such issue shall be deemed to be outstanding, and immediately after any Additional Shares of Common Stock are deemed issued pursuant to Section
2(e)(iii), such Additional Shares of Common Stock shall be deemed to be outstanding.

(2) Series C Preferred Stock and Series D Preferred Stock. If there shall occur any adjustment in the Series B Conversion Price pursuant to Section 2(e)(iv)(1) above, then and in such event, the Series C Conversion Price and the Series D

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Conversion Price shall each be automatically adjusted (rounded down to the nearest cent) by the same percentage as the percentage of the adjustment to the Series B Conversion Price.

(v) Determination of Consideration. For purposes of this Section 2(e), the consideration received by the Corporation for the issue of any Additional Shares of Common Stock shall be computed as follows:

(1) Cash and Property. Such consideration shall:

(A) insofar as it consists of cash, be computed at the aggregate amounts of cash received by the Corporation excluding amounts paid or payable for accrued interest or accrued dividends;

(B) insofar as it consists of property other than cash, be computed at the fair value thereof at the time of such issue, as determined in accordance with Section 1(b); and

(C) in the event Additional Shares of Common Stock are issued together with other shares or securities or other assets of the Corporation for consideration which covers both, be the proportion of such consideration so received, computed as provided in clauses (A) and (B) above, as determined in good faith by the Board of Directors.

(2) Options and Convertible Securities. The consideration per share received by the Corporation for Additional Shares of Common Stock deemed to have been issued pursuant to Section 2(e)(iii)(1), relating to Options and Convertible Securities, shall be determined by dividing
(x) the total amount, if any, received or receivable by the Corporation as consideration for the issue of such Options or Convertible Securities, plus the minimum aggregate amount of additional consideration (as set forth in the instruments relating thereto, without regard to any provision contained therein for a subsequent adjustment of such consideration) payable to the Corporation upon the exercise of such Options or the conversion or exchange of such Convertible Securities, or in the case of Options for Convertible Securities, the exercise of such Options for Convertible Securities and the conversion or exchange of such Convertible Securities, by (y) the maximum number of shares of Common Stock (as set forth in the instruments relating thereto, without regard to any provision contained therein for a subsequent adjustment of such number) issuable upon the exercise of such Options or the conversion or exchange of such Convertible Securities.

(vi) Adjustments for Dividends, Distributions, Subdivisions, Combinations or Consolidations of Common Stock.

(1) Stock Dividends, Distributions or Subdivisions. In the event the Corporation shall be deemed to issue Additional Shares of Common Stock pursuant to Section 2(e)(iii)(2) in a stock dividend, stock distribution or subdivision, the Conversion Price of each series of Preferred Stock in effect immediately before such deemed issuance shall, concurrently with the effectiveness of such deemed issuance, be proportionately decreased.

(2) Combinations or Consolidations. In the event the outstanding shares of Common Stock shall be combined or consolidated, by reclassification or

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otherwise, into a lesser number of shares of Common Stock, the Conversion Price of each series of Preferred Stock in effect immediately prior to such combination or consolidation shall, concurrently with the effectiveness of such combination or consolidation, be proportionately increased.

(f) Adjustments for Certain Dividends and Distributions. In the event that at any time or from time to time after the Baseline Date the Corporation shall make or issue, or fix a record date for the determination of holders of Common Stock entitled to receive, a dividend or other distribution payable in securities of the Corporation other than shares of Common Stock or securities the issuance of which are deemed to be issuances of Common Stock under Section 2(e)(iii), then and in each such event provision shall be made so that the holders of Preferred Stock of such series shall receive upon conversion thereof in addition to the number of shares of Common Stock receivable thereupon, the amount of securities of the Corporation that they would have received had their Preferred Stock been converted into Common Stock immediately prior to such event and had they thereafter, during the period from the date of such event to and including the conversion date, retained such securities receivable by them as aforesaid during such period, giving application during such period to all adjustments called for herein.

(g) Adjustment for Reclassification, Exchange, or Substitution. In the event that at any time or from time to time after the Baseline Date, the Common Stock issuable upon the conversion of such series of Preferred Stock shall be changed into the same or a different number of shares of any class or series of stock or other securities or property, whether by capital reorganization, reclassification, recapitalization or otherwise (other than a subdivision or combination of shares or stock dividend provided for above, or a merger, consolidation, or sale of assets provided for below), then and in each such event the holder of any shares of such series of Preferred Stock shall have the right thereafter to convert such shares into the kind and amount of shares of stock and other securities and property receivable upon such reorganization, reclassification recapitalization or other change by the holder of a number of shares of Common Stock equal to the number of shares of Common Stock into which such shares of such series of Preferred Stock might have been converted immediately prior to such reorganization, reclassification, recapitalization or change, all subject to further adjustment as provided herein.

(h) Adjustment for Merger, Consolidation or Sale of Assets. In the event that at any time or from time to time the Corporation shall merge or consolidate with or into another entity or sell all or substantially all of its assets, and such consolidation, merger or sale is not treated as a liquidation under Section 1(c), each share of Preferred Stock shall thereafter be convertible into the kind and amount of shares of stock or other securities or property to which a holder of the number of shares of Common Stock of the Corporation deliverable upon conversion of such Preferred Stock would have been entitled to receive upon such consolidation, merger or sale; and, in such case, appropriate adjustment (as determined in good faith by the Board of Directors) shall be made in the application of the provisions set forth in this Section 2 with respect to the rights and interest thereafter of the holders of shares of such Preferred Stock, to the end that the provisions set forth in this Section 2 (including provisions with respect to changes in and other adjustments of the Conversion Prices) shall thereafter be applicable, as nearly as reasonably may be, in relation to any shares of stock or other securities or property thereafter deliverable upon the conversion of such Preferred Stock

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(i) Special Mandatory Conversion.

(i) Mandatory Conversion Upon Failure to Participate in Equity Financing.

(1) When any holder of shares of Series A Preferred Stock is entitled to exercise its right of first refusal (the "RIGHT OF FIRST REFUSAL") as set forth in Section 3 of that certain Investor Rights Agreement, dated as of July 31, 2003, by and among the Corporation and certain of its stockholders, as the same may be amended and/or restated from time to time (the "RIGHTS AGREEMENT") with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series A Conversion Price in effect immediately prior to such issue or sale (a "SERIES A DILUTIVE ISSUANCE") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 3 of the Rights Agreement in respect thereof and (y) the provisions of the Right of First Refusal applicable to the particular Series A Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not, by exercise of such holder's Right of First Refusal, acquire at least such holder's Basic Amount (as defined in and calculated in accordance with Section 3.1 of the Rights Agreement) of New Securities (as defined in Section 3.2 of the Rights Agreement) in such Series A Dilutive Issuance, then each Non-Participating Series A Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series A Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series A Dilutive Issuance, at the Series A Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series A Preferred Stock are converted into shares of Common Stock in accordance with this Section (i)(i)(1) shall be deemed to have waived with respect to each Non-Participating Series A Share (A) the reduction in the Series A Conversion Price of such Non-Participating Series A Share that would have otherwise resulted pursuant to Section 2(e) from such Series A Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series A Share pursuant to this Section 2(i)(i)(1), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES A SHARES" shall mean such number of shares of Series A Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(2) When any holder of shares of Series B Preferred Stock is entitled to exercise its Right of First Refusal as set forth in Section 3 of the Rights Agreement with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series B Conversion Price in effect immediately prior to such issue or sale (a "SERIES B DILUTIVE ISSUANCE") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 3 of the Rigs Agreement in respect thereof and (y) the provisions of the Right of First Refusal applicable

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to the particular Series B Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not by exercise of such holder's Right of First Refusal, acquire at least such holder's Basic Amount of New Securities in such Series B Dilutive Issuance, then each Non-Participating Series B Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series B Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series B Dilutive Issuance, at the Series B Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series B Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(2) shall be deemed to have waived with respect to each Non-Participating Series B Share (A) the reduction in the Series B Conversion Price of such Non-Participating Series B Share that would have otherwise resulted pursuant to Section 2(e) from such Series B Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series B Share pursuant to this Section 2(i)(i)(2), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES B SHARES" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series B Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(3) When any holder of shares of Series C Preferred Stock is entitled to exercise its right of first refusal (the "SERIES C RIGHT OF FIRST REFUSAL") as set forth in Section 3 of the Rights Agreement or Section 16 of that certain Investor Rights Agreement, dated as of September 8, 2003, by and between the Corporation and Merck & Co., Inc. (the "SERIES C RIGHTS AGREEMENT"), as the case may be, with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series C Conversion Price in effect immediately prior to such issue or sale (a "SERIES C DILUTIVE ISSUANCE") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 3 of the Rights Agreement or
Section 16 of the Series C Rights Agreement, as the case may be, in respect thereof and (y) the provisions of the Series C Right of First Refusal applicable to the particular Series C Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Rights Agreement or the Series C Rights Agreement, as the case may be, if such holder (either alone or with or through its partners, stockholders or affiliates) does not, by exercise of such holder's Series C Right of First Refusal, acquire at least such holder's Basic Amount (as defined in and calculated in accordance with Section 3.1 of the Rights Agreement or Section 16(a) of the Series C Rights Agreement, as the case may be) of New Securities (as defined in Section 3.2 of the Rights Agreement or Section 16(b) of the Series C Rights Agreement, as the case may be) in such Series C Dilutive Issuance, then each Non-Participating Series C Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series C Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series C Dilutive

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Issuance, at the Series C Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series C Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(3) shall be deemed to have waived with respect to each Non-Participating Series C Share (A) the reduction in the Series C Conversion Price of such Non-Participating Series C Share that would have otherwise resulted pursuant to Section 2(e) from such Series C Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series C Share pursuant to this Section 2(i)(i)(3), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES C SHARES" shall mean such number of shares of Series C Preferred Stock of a holder that is determined by multiplying the total number of shares of Series C Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series C Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement or Section 16(i) of the Series C Rights Agreement, as the case may be) in the Series C Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(4) When any holder of shares of Series D Preferred Stock is entitled to exercise its right of first refusal (the "SERIES D RIGHT OF FIRST REFUSAL") as set forth in Section 16 of that certain Investor Rights Agreement, dated as of March 11, 2004, by and between the Corporation and Isis Pharmaceuticals, Inc. (the "SERIES D RIGHTS AGREEMENT") with respect to any issuance or sale by the Corporation of any equity securities (but not options, warrants or debt securities convertible into equity securities) of the Corporation without consideration or for a consideration per share less than the Series D Conversion Price in effect immediately prior to such issue or sale (a "SERIES D DILUTIVE ISSUANCE") and (x) the Corporation has complied in all material respects with its obligations pursuant to Section 16 of the Series D Rights Agreement in respect thereof and (y) the provisions of the Series D Right of First Refusal applicable to the particular Series D Dilutive Issuance involved have not been waived by the Corporation or eliminated in accordance with the terms of the Series D Rights Agreement, if such holder (either alone or with or through its partners, stockholders or affiliates) does not, by exercise of such holder's Series D Right of First Refusal, acquire at least such holder's Basic Amount (as defined in and calculated in accordance with Section 16(a) of the Series D Rights Agreement) of New Securities (as defined in Section 16(b) of the Series D Rights Agreement) in such Series D Dilutive Issuance, then each Non-Participating Series D Share (as defined below) held by such holder shall automatically and without further action on the part of such holder be converted, effective subject to and concurrently with consummation of the Series D Dilutive Issuance, into shares of Common Stock at the time of the first closing of such Series D Dilutive Issuance, at the Series D Conversion Price in effect immediately prior to such closing. Each holder whose shares of Series D Preferred Stock are converted into shares of Common Stock in accordance with this Section 2(i)(i)(4) shall be deemed to have waived with respect to each Non-Participating Series D Share (A) the reduction in the Series D Conversion Price of such Non-Participating Series D Share that would have otherwise resulted pursuant to Section 2(e) from such Series D Dilutive Issuance and (B) the right to receive, upon conversion of such Non-Participating Series D Share pursuant to this Section 2(i)(i)(4), any additional shares of Common Stock that would have been issuable as a result of such reduction in the Conversion Price. The term "NON-PARTICIPATING SERIES D SHARES" shall mean such number of shares of Series D Preferred Stock of a holder that is determined by multiplying the total number of shares of Series D Preferred Stock held by such holder by a fraction, the numerator of which is such holder's

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Basic Amount in such Series D Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to
Section 16(i) of the Series D Rights Agreement) in the Series D Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(ii)

(1) Notwithstanding the foregoing, in the event that the Corporation issues equity securities in a transaction that is a Series B Dilutive Issuance, a Series C Dilutive Issuance and a Series D Dilutive Issuance (the "SERIES B/C/D DILUTIVE ISSUANCE") and a holder of Series B Preferred Stock, Series C Preferred Stock and Series D Preferred Stock does not acquire at least such holder's Basic Amount of New Securities, then the shares of Preferred Stock of such holder that shall be converted into shares of Common Stock in accordance with this Section 2(i) shall be allocated pro rata to such holder's Series B Preferred Stock, Series C Preferred Stock and Series D Preferred Stock. For purposes of clarity, in the event of a Series B/C/D Dilutive Issuance, (A) the term "NON-PARTICIPATING SERIES B SHARES" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B/C/D Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series B/C/D Dilutive Issuance, and the denominator of which is such holder's Basic Amount, (B) the term "NON-PARTICIPATING SERIES C SHARES" shall mean such number of shares of Series C Preferred Stock of a holder that is determined by multiplying the total number of shares of Series C Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B/C/D Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series B/C/D Dilutive Issuance, and the denominator of which is such holder's Basic Amount and (C) the term "NON-PARTICIPATING SERIES D SHARES" shall mean such number of shares of Series D Preferred Stock of a holder that is determined by multiplying the total number of shares of Series D Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series B/C/D Dilutive Issuance minus the number of New Securities purchased by such holder (and any Affiliate of such holder pursuant to Section 16(i) of the Series D Rights Agreement) in the Series B/C/D Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(2) Notwithstanding the foregoing, in the event that the Corporation issues equity securities in a transaction that is a Series A Dilutive Issuance, a Series B Dilutive Issuance, a Series C Dilutive Issuance and a Series D Dilutive Issuance (the "SERIES A/B/C/D DILUTIVE ISSUANCE") and a holder of any combination of (i) Series A Preferred Stock, Series B Preferred Stock, Series C Preferred Stock and Series D Preferred Stock,
(ii) Series A Preferred Stock and Series B Preferred Stock, (iii) Series A Preferred Stock and Series C Preferred Stock or (iv) Series A Preferred Stock and Series D Preferred Stock does not acquire at least such holder's Basic Amount of New Securities, then the shares of Preferred Stock of such holder that shall be converted into shares of Common Stock in accordance with this Section 2(i) shall be allocated pro rata to such holder's Series A Preferred Stock, Series B Preferred Stock, Series C Preferred Stock and/or Series D Preferred Stock. For purposes of clarity, in the event of

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a Series A/B/C/D Dilutive Issuance, (A) the term "NON-PARTICIPATING SERIES A SHARES" shall mean such number of shares of Series A Preferred Stock of a holder that is determined by multiplying the total number of shares of Series A Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B/C/D Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B/C/D Dilutive Issuance, and the denominator of which is such holder's Basic Amount, (B) the term "NON-PARTICIPATING SERIES B SHARES" shall mean such number of shares of Series B Preferred Stock of a holder that is determined by multiplying the total number of shares of Series B Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B/C/D Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to Section 3.9 of the Rights Agreement) in the Series A/B/C/D Dilutive Issuance, and the denominator of which is such holder's Basic Amount, (C) the term "NON-PARTICIPATING SERIES C SHARES" shall mean such number of shares of Series C Preferred Stock of a holder that is determined by multiplying the total number of shares of Series C Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B/C/D Dilutive Issuance minus the number of New Securities purchased by such holder (and any assignee of such holder pursuant to
Section 3.9 of the Rights Agreement) in the Series A/B/C/D Dilutive Issuance, and the denominator of which is such holder's Basic Amount and (D) the term "NON-PARTICIPATING SERIES D SHARES" shall mean such number of shares of Series D Preferred Stock of a holder that is determined by multiplying the total number of shares of Series D Preferred Stock held by such holder by a fraction, the numerator of which is such holder's Basic Amount in such Series A/B/C/D Dilutive Issuance minus the number of New Securities purchased by such holder (and any Affiliate of such holder pursuant to 16(i) of the Series D Rights Agreement) in the Series A/B/C/D Dilutive Issuance, and the denominator of which is such holder's Basic Amount.

(iii) Mechanics of Special Mandatory Conversion. The holder of any shares of Series A Preferred Stock, Series B Preferred Stock, Series C Preferred Stock or Series D Preferred Stock converted pursuant to this
Section 2(i) shall surrender the certificate or certificates of such shares, duly endorsed for transfer or with duly executed stock transfer powers sufficient to permit transfers attached, at the office of the Corporation or any transfer agent for such Preferred Stock (or such holder shall notify the Corporation or any transfer agent that such certificates have been lost, stolen or destroyed and shall execute an agreement reasonably satisfactory to the Corporation (which agreement will not require a bond) to indemnify the Corporation from any loss incurred by it in connection therewith). The Corporation shall, as soon as practicable thereafter, issue and deliver at such office to such holder of Preferred Stock, or to such holder's nominee or nominees, a certificate or certificates for the number of full shares of Common Stock to which such holder shall be entitled as aforesaid. Such conversion shall be deemed to have been made immediately prior to the consummation of the Series A Dilutive Issuance, Series B Dilutive Issuance, Series C Dilutive Issuance or Series D Dilutive Issuance, as the case may be, unless the transfer books of the Corporation are closed on that date, in which event such holder shall be deemed to have become a holder of record of Common Stock on the next succeeding date on which the transfer books are open.

(j) No Impairment. The Corporation shall not, by amendment of its Certificate of Incorporation or through any reorganization, transfer of assets, consolidation,

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merger, dissolution, issue or sale of securities or any other voluntary action, avoid or seek to avoid the observance or performance of any of the terms to be observed or performed hereunder by the Corporation but shall at all times in good faith assist in the carrying out of all the provisions of this Section 2 and in the taking of all such action as may be necessary or appropriate in order to protect the Conversion Rights of the holders of Preferred Stock against impairment.

(k) Certificate as to Adjustments. Upon the occurrence of each adjustment or readjustment of the Conversion Price for a particular series of Preferred Stock pursuant to this Section 2, the Corporation at its expense shall promptly compute such adjustment or readjustment in accordance with the terms hereof and furnish to each holder of shares of such series of Preferred Stock a certificate setting forth such adjustment or readjustment and showing in detail the facts upon which such adjustment or readjustment is based. The Corporation shall, upon the written request at any time of any holder of shares of a particular series of Preferred Stock, furnish or cause to be furnished to such holder a like certificate setting forth (i) such adjustments and readjustments, (ii) the Conversion Price for such series at the time in effect, and (iii) the number of shares of Common Stock and the amount, if any, of other property which at the time would be received upon the conversion of each share of such series of Preferred Stock.

(l) Notices of Record Date. In the event of any taking by the Corporation of a record of the holders of any class or series of securities for the purpose of determining the holders thereof who are entitled to receive any dividend or other distribution, the Corporation shall mail to each holder of Preferred Stock at least ten (10) days prior to such record date a notice specifying the date on which any such record is to be taken for the purpose of such dividend or distribution.

(m) Common Stock Reserved. The Corporation shall reserve and keep available, free from pre-emptive rights, out of its authorized but unissued Common Stock, solely for the purpose of effecting the conversion of Preferred Stock, such number of shares of Common Stock as shall from time to time be sufficient to effect conversion of the Preferred Stock. If at any time the number of authorized but unissued shares of Common Stock shall not be sufficient to effect the conversion of all the then outstanding shares of Preferred Stock, the Corporation shall promptly take such corporate action as may, in the opinion of its counsel, be necessary to increase its authorized but unissued shares of Common Stock to such number of shares as shall be sufficient for such purpose.

(n) Certain Taxes. The Corporation shall pay any issue or transfer taxes payable in connection with the conversion of Preferred Stock, provided, however, that the Corporation shall not be required to pay any tax which may be payable in respect of any transfer to a name other than that of the holder of the Preferred Stock.

(o) Closing of Books. The Corporation shall at no time close its transfer books against the transfer of any Preferred Stock or of any shares of Common Stock issued or issuable upon the conversion of any shares of Preferred Stock in any manner which interferes with the timely conversion or transfer of such Preferred Stock or Common Stock.

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(p) Validity of Shares. The Corporation agrees that it will from time to time take all such actions as may be required to assure that all shares of Common Stock which may be issued upon conversion of any Preferred Stock will, upon issuance, be legally and validly issued, fully paid and nonassessable and free from all taxes, liens and charges with respect to the issue thereof.

Section 3. Restrictions.

(a) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 60% in voting power of the then outstanding shares of Series A Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series A Preferred Stock;

(ii) amend or repeal any provision of, or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any corporation or other entity in which it holds, directly or indirectly, an equity interest representing more than 50% of the voting power of all outstanding capital stock of such entity (any such entity, a "SUBSIDIARY") to amend or repeal any provision of or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-Laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series A Preferred Stock or increase or decrease the number of authorized shares of Series A Preferred Stock; or

(iii) authorize or designate any class or series of capital stock having rights senior to or on a parity with the Series A Preferred Stock as to dividends, liquidation or otherwise.

(b) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 66 2/3% in voting power of the then outstanding shares of Series B Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series B Preferred Stock;

(ii) amend or repeal any provision of or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any Subsidiary to amend or repeal any provision of, or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series B Preferred Stock or increase or decrease the number of authorized shares of Series B Preferred Stock; or

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(iii) authorize or designate any class or series of capital stock having rights senior to or on a parity with the Series B Preferred Stock as to dividends, liquidation or otherwise.

(c) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least a majority of the voting power of the then outstanding shares of Series C Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series C Preferred Stock; or

(ii) amend or repeal any provision of or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any Subsidiary to amend or repeal any provision of, or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series C Preferred Stock or increase or decrease the number of authorized shares of Series C Preferred Stock.

(d) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least a majority of the voting power of the then outstanding shares of Series D Preferred Stock, the Corporation will not:

(i) amend the preferences, rights or privileges of the Series D Preferred Stock; or

(ii) amend or repeal any provision of or add any provision to, the Corporation's Certificate of Incorporation or By-laws or permit any Subsidiary to amend or repeal any provision of, or add any provision to, the Certificate of Incorporation (or other equivalent organizational document) or By-laws (or other equivalent document) of such Subsidiary that would adversely affect the preferences, rights or privileges of the Series D Preferred Stock or increase or decrease the number of authorized shares of Series D Preferred Stock.

(e) In addition to any other vote required by law or this Certificate of Incorporation, without first obtaining the affirmative vote or written consent of the holders of at least 66 2/3% in voting power of-the then outstanding shares of all series of Senior Preferred Stock, voting together as a single class, the Corporation will not:

(i) pay or declare any dividend or distribution on any shares of its capital stock (except dividends payable solely in shares of Common Stock), or apply any of its assets to the redemption, retirement, purchase or acquisition, directly or indirectly, through Subsidiaries or otherwise, of any shares of the Corporation's capital stock except (a) as expressly set forth herein or (b) for repurchases of Common Stock upon termination of employment or service pursuant to written agreements in effect on the date hereof or written agreements approved by the Corporation's Board of Directors or a committee thereof);

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(ii) sell, lease or otherwise dispose of all or substantially all of the assets of the Corporation, or permit any Subsidiary to sell, lease or otherwise dispose of all or substantially all of the assets of such Subsidiary;

(iii) voluntarily liquidate or dissolve or permit any Subsidiary to voluntarily liquidate or dissolve;

(iv) enter into any merger, consolidation or capital reorganization, or permit any Subsidiary to enter into any merger, consolidation or capital reorganization;

(v) effect any acquisition of the capital stock of another entity that results in the consolidation of that entity into the results of operations of the Corporation;

(vi) increase the number of seats on the Board of Directors above nine;

(vii) acquire all or substantially all of the assets of another entity;

(viii) incur indebtedness for borrowed funds, in a single or related series of transactions, in principal amount at any time outstanding in excess of $500,000;

(ix) create a new plan or arrangement for the grant of stock options, stock appreciation rights, restricted stock or other similar stock-based compensation, or increase the number of shares or other rights available under such existing plan or arrangement, except for increases in the manner of shares approved in the manner provided in Section
2(e)(i)(4)(B); or

(x) any provision of the By-Laws of the Corporation to the contrary notwithstanding, increase the number of directors constituting the entire Board of Directors, except as necessary to add independent outside directors whose election is subject to the approval of all of the Preferred Stock Directors then in office (as defined below).

(f) (i) Notwithstanding any other provision of this Certificate of Incorporation or the Corporation's By-Laws to the contrary, written notice of any action specified in Section 3(a) or 3(b) shall be given by the Corporation to each holder of outstanding shares of Senior Preferred Stock at least twenty (20) days before the date on which the books of the Corporation shall close or a record shall be taken with respect to such proposed action, or, if there shall be no such date, at least twenty (20) days before the date when such proposed action is scheduled to take place. Any holder of outstanding shares of Senior Preferred Stock may waive any notice required by this Section by a written document specifically indicating such waiver, and the holders of two-thirds in voting power of all series of Senior Preferred Stock, voting together as a single class, may waive any such notice on behalf of all holders of the Senior Preferred Stock.

(ii) Notwithstanding any other provision of this Certificate of Incorporation or the Corporation's By-Laws to the contrary, written notice of any action

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specified in Section 3(c) shall be given by the Corporation to each holder of outstanding shares of Series C Preferred Stock at least twenty (20) days before the date on which the books of the Corporation shall close or a record shall be taken with respect to such proposed action, or, if there shall be no such date, at least twenty (20) days before the date when such proposed action is scheduled to take place. Any holder of outstanding shares of Series C Preferred Stock may waive any notice required by this Section by a written document specifically indicating such waiver, and the holders of a majority in voting power of the Series C Preferred Stock, voting together as a single class, may waive any such notice on behalf of all holders of the Series C Preferred Stock.

(iii) Notwithstanding any other provision of this Certificate of Incorporation or the Corporation's By-Laws to the contrary, written notice of any action specified in Section 3(d) shall be given by the Corporation to each holder of outstanding shares of Series D Preferred Stock at least twenty (20) days before the date on which the books of the Corporation shall close or a record shall be taken with respect to such proposed action, or, if there shall be no such date, at least twenty (20) days before the date when such proposed action is scheduled to take place. Any holder of outstanding shares of Series D Preferred Stock may waive any notice required by this Section by a written document specifically indicating such waiver, and the holders of a majority in voting power of the Series D Preferred Stock, voting together as a single class, may waive any such notice on behalf of all holders of the Series D Preferred Stock.

Section 4. Voting Rights.

(a) Except as otherwise required by law or set forth in this Certificate of Incorporation, the holders of Preferred Stock shall be entitled to notice of any meeting of stockholders and shall vote together with the holders of Common Stock as a single class upon any matter submitted to the stockholders for a vote. With respect to all questions as to which, under law, stockholders are required to vote by classes or series, the Preferred Stock shall vote separately as a single class and series apart from the Common Stock. Shares of Common Stock and Preferred Stock shall entitle the holders thereof to the following number of votes on any matter as to which they are entitled to vote:

(i) Holders of Common Stock shall have one vote per share; and

(ii) Holders of Preferred Stock shall have that number of votes per share as is equal to the number of shares of Common Stock (including fractions of a share) into which each such share of Preferred Stock held by such holder could be converted on the date for determination of stockholders entitled to vote at the meeting or on the date of any written consent.

(b) Except as contemplated by the Rights Agreement, the Board of Directors shall not delegate any of its powers or duties to any committee of the Board of Directors without the consent of all of the Preferred Stock Directors then in office.

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(c) In addition to any other vote required by law or by this Certificate of Incorporation, the Corporation shall not amend this Certificate of Incorporation, whether by merger, consolidation or otherwise, so as to amend, alter or repeal the powers, preferences or special rights of the Senior Preferred Stock in a manner that affects them adversely, without the written consent or affirmative vote of the holders of a majority of the then outstanding shares of Senior Preferred Stock, given in writing or by vote at a meeting, consenting or voting (as the case may be) separately as a class.

(d) In addition to any other vote required by law or by this Certificate of Incorporation, the Corporation shall not amend this Certificate of Incorporation, whether by merger, consolidation or otherwise, so as to amend, alter or repeal the powers, preferences or special rights of the Series C Preferred Stock in a manner that affects them adversely, without the written consent or affirmative vote of the holders of a majority of the then outstanding shares of Series C Preferred Stock, given in writing or by vote at a meeting, consenting or voting (as the case may be) separately as a class.

(e) In addition to any other vote required by law or by this Certificate of Incorporation, the Corporation shall not amend this Certificate of Incorporation, whether by merger, consolidation or otherwise, so as to amend, alter or repeal the powers, preferences or special rights of the Series D Preferred Stock in a manner that affects them adversely, without the written consent or affirmative vote of the holders of a majority of the then outstanding shares of Series D Preferred Stock, given in writing or by vote at a meeting, consenting or voting (as the case may be) separately as a class.

(f) At all times during which the number of outstanding stares of Series A Preferred Stock equals or exceeds 1,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Series A Preferred Stock shall have the exclusive right, separately from the Common Stock and the other series of Preferred Stock, to elect two directors of the Corporation. Any such director is sometimes hereinafter referred to as a "SERIES A PREFERRED STOCK DIRECTOR." At all times during which the number of outstanding shares of Series B Preferred Stock equals or exceeds 1,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Series B Preferred Stock shall have the exclusive right, separately from the Common Stock and the other series of Preferred Stock, to elect one director of the Corporation. Such director is sometimes hereinafter referred to as a "SERIES B PREFERRED STOCK DIRECTOR." At all times during which the number of outstanding shares of Senior Preferred Stock equals or exceeds 2,000,000 (such minimum number of shares to be subject to equitable adjustment whenever there shall occur a stock dividend, stock split, combination of shares, reclassification or other similar event), the holders of the outstanding shares of Senior Preferred Stock, voting together as a single class, shall have the exclusive right, separately from the Common Stock, to elect one director of the Corporation. Such director is sometimes hereinafter referred to as a "SERIES A/B PREFERRED STOCK DIRECTOR" and each of the Series A Preferred Stock Directors, the Series B Preferred Stock Director and the Series A/B Director is sometimes hereinafter referred to as a "PREFERRED STOCK DIRECTOR." Each Preferred Stock Director shall be elected by the vote or written consent of the holders of a plurality in

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voting power of the series of Senior Preferred Stock entitled to elect such Preferred Stock Director. If a Preferred Stock Director shall cease to serve as a director for any reason, another director elected by the holders of the series of Senior Preferred Stock entitled to elect such Preferred Stock Director shall replace such Director. Any Preferred Stock Director may be removed, with or without cease, and a replacement Preferred Stock Director may be elected in his stead, at any time by the affirmative vote at a meeting duly called for the purpose, or by written consent, of the holders of a plurality in voting power of the outstanding series of Senior Preferred Stock entitled to elect such director.

(g) At all times during which shares of Common Stock remain outstanding, the holders of the outstanding shares of Common Stock shall have the exclusive right, separately from the Preferred Stock, to elect two directors of the Corporation (the "COMMON STOCK DIRECTORS"). Each Common Stock Director shall be elected by the vote or written consent of the holders of a plurality in voting power of the outstanding Common Stock. If a Common Stock Director shall cease to serve as a director for any reason, another director elected by the holders of the Common Stock shall replace such director. Any Common Stock Director may be removed, with or without cause, and a replacement Common Stock Director maybe elected in his stead, at any time by the affirmative vote at a meeting duly called for the purpose, or by written consent, of the holders of a plurality in voting power of the outstanding Common Stock.

(h) All other directors of the Corporation shall be elected by the holders of the Common Stock and Preferred Stock voting together as a single class, with the holders of Preferred Stock to have that number of votes as is determined in accordance with Section 4(a)(ii).

(i) In addition to any rights which maybe available under the Corporation's By-Laws or otherwise under law, the holders of not less than twenty percent (20%) in voting power of the outstanding Senior Preferred Stock shall be entitled to call meetings of the stockholders of the Corporation. Within five (5) business days after written application by the holders of not less than twenty percent (20%) in voting power of the outstanding Senior Preferred Stock, the President or Secretary, or such other officer of the Corporation as may be authorized in the By-Laws of the Corporation to give notice of meetings of stockholders of the Corporation, shall notify each stockholder of the Corporation entitled to such notice of the date, time, place and purpose of such meeting.

Section 5. Dividends.

(a) Dividends may be declared and paid on Common Stock and Preferred Stock from funds lawfully available therefor as and when determined by the Board of Directors of the Corporation.

(b) No dividends shall be declared or paid on the Common Stock or Preferred Stock except as set forth in this Section 5.

Section 6. Redemption.

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(a) At the written election of holders of at least 66 2/3% in voting power of the outstanding shares of Senior Preferred Stock made at any time on or after July 25, 2007 (the "REDEMPTION ELECTION"), the Corporation shall be required to redeem all, but not less than all, of the outstanding shares of Senior Preferred Stock in three equal annual installments, upon the teams set forth in this Section 6. The first installment of such redemption (the "FIRST REDEMPTION DATE") shall occur on a date specified in the Redemption Election, which shall be not less than ninety (90) days after the date of the Redemption Election, and the second and third installments of such redemption shall occur on the first and second anniversaries, respectively, of the First Redemption Date. The Corporation shall redeem one-third of the outstanding shares of Senior Preferred Stock held by each holder on the First Redemption Date, one half of the outstanding shares of Senior Preferred Stock then held by each holder on the first anniversary thereof and the remaining shares on the second anniversary thereof. On each such redemption date, the holders shall surrender the certificate or certificates for the shares to be redeemed duly endorsed for transfer or with duly executed stock transfer powers sufficient to permit transfer attached, at the offices of the Corporation or of any transfer agent for the Senior Preferred Stock. The Corporation shall, as soon as practicable thereafter, issue and deliver to each holder a certificate or certificates for the balance of the shares not being redeemed. The redemption price of each share of Series A Preferred Stock shall be equal to (1) $1.00 (as adjusted for any stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such Senior Preferred Stock) plus all dividends declared but unpaid on such share on the applicable redemption date (the "SERIES A REDEMPTION AMOUNT") plus (ii) an additional amount computed like interest payable on the Series A Redemption Amount at the rate equal to simple interest of ten percent (10%) per annum from the date of issuance of such share of Senior Preferred Stock. The redemption price of each share of Series B Preferred Stock shall be equal to (1) $2.50 (as adjusted for any stock dividend, stock split, combination of shares, reclassification or other similar event with respect to such Senior Preferred Stock) plus all dividends declared but unpaid on such share opt the applicable redemption date (the "SERIES B REDEMPTION AMOUNT," each of the Series A Redemption Amount and the Series B Redemption Amount being sometimes hereinafter referred to as a "REDEMPTION AMOUNT") plus (ii) an additional amount computed like interest payable on the Series B Redemption Amount at the rate equal to simple interest often percent (10%) per annum from the date of issuance of such share of Senior Preferred Stock.

(b) Notice of redemption shall be sent by first class mail, postage prepaid, to each holder of record of the Senior Preferred Stock, not less than thirty days nor more than sixty days prior to the First Redemption Date, at the address of such holder as it appears on the books of the Corporation. Such notice shall set forth (i) the First Redemption Date, the dates of the second and third installments of such redemption, and the place of redemption, and (ii) the number of shares to be redeemed on each date of redemption and the redemption price calculated in accordance with Section 6(a) above, on each such date. The Corporation shall be obligated to redeem the Senior Preferred Stock on the dates and in the amounts set forth in the notice; provided; however, that any holder of Senior Preferred Stock who is not party to a Redemption Election may convert any or all of the shares owned by such holder into Common Stock in accordance with Section 2(d) at any time prior to the date of redemption of such shares. The Corporation, if advised before the close of business on the relevant redemption date by written notice from any holder of record of Senior Preferred Stock to be redeemed, shall credit against the number of shares of Senior Preferred Stock required to be redeemed from such holder, and

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shall not redeem, the number of shares of Senior Preferred Stock which shall have been converted by such holder on or before such date and which shall not previously have been credited against any redemption.

(c) If, on or before a redemption date, the funds necessary for such redemption shall have been set aside by the Corporation and deposited with a bank or trust company, in trust for the pro rata benefit of the holders of the Senior Preferred Stock that has been called for redemption, then, notwithstanding that any certificates for shares that have been called for redemption shall not have been surrendered for cancellation, the shares represented thereby shall no longer be deemed outstanding from and after such redemption date, and all rights of holders of such shares so called for redemption shall forthwith, after such redemption date, cease and terminate with respect to such shares, excepting only the right to receive the redemption funds therefor to which they are entitled. Any interest accrued on funds so deposited and unclaimed by stockholders entitled thereto shall be paid to such stockholders at the time their respective shares are redeemed or to the Corporation at the time unclaimed amounts are paid to it. In case the holders of Senior Preferred Stock which shall have been called for redemption shall not, within one year after the final redemption date, claim the amounts so deposited with respect to the redemption thereof, any such bank or trust company shall, upon demand, pay over to the Corporation such unclaimed amounts and thereupon such bank or trust company shall be relieved of all responsibility in respect thereof to such holder and such holder shall look only to the Corporation for the payment thereof. Any funds so deposited with a bank or trust company which shall not be required for such redemption by reason of the exercise subsequent to the date of such deposit of the right of conversion of any shares or otherwise shall be returned to the Corporation forthwith.

(d) If the Corporation for any reason fails to redeem any of the shares of Senior Preferred Stock in accordance with Section 6(a) on or prior to the redemption dates determined in accordance with this Section 6, then, the Corporation shall become obligated to pay, in addition to the redemption price specified in Section 6(a), interest on the unpaid balance of such price, which shall, accrue at a rate equal to the lesser of (i) one percent (1%) per month or (ii) the maximum interest rate allowable under applicable law, until such price is paid in full.

(e) If the funds of the Corporation legally available for redemption of shares of Senior Preferred Stock on a redemption date are insufficient to redeem the total number of shares of Senior Preferred Stock submitted for redemption, those funds which are legally available will be used to redeem the maximum possible number of whole shares ratably among the holders of such shares based on the total Redemption Amounts owed to such holders. The shares of Senior Preferred Stock not redeemed shall remain outstanding and entitled to all rights and preferences provided herein. At any time thereafter when additional funds of the Corporation are legally available for the redemption of such shares of Senior Preferred Stock, such funds will be used, at the end of the next succeeding fiscal quarter, to redeem the balance of such shares, or such portion thereof for which funds are then legally available.

Section 7. No Reissuance of Preferred Stock. No shares of Preferred Stock acquired by the Corporation by reason of redemption, purchase, conversion or otherwise shall be reissued, and all such shares shall be canceled, retired and eliminated from the shares which the Corporation shall be authorized to issue.

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Section 8. Residual Rights. All rights accruing to the outstanding shares of the Corporation not expressly provided for to the contrary herein shall be vested in the Common Stock.

Section 9. Notices. All notices required or permitted to be sent pursuant to this Article FOURTH shall be deemed sufficient if contained in a written instrument and delivered in person or duly sent by first-class mail postage prepaid (other than in the case of notices to or from many non U.S. resident) or by fax or DHL, Federal Express or other recognized express international courier service, addressed to the intended recipient at the recipient's address as it appears on the books of the Corporation.

3. Pursuant to Section 228(a) of the General Corporation Law of the State of Delaware, the holders of outstanding shares of the Corporation having no less than the minimum number of votes that would be necessary to authorize or take such actions at a meeting at which all shares entitled to vote thereon were present and voted, consented to the adoption of the aforesaid amendments without a meeting, without a vote and without prior notice and that written notice of the taking of such actions has been given in accordance with Section 228(e) of the General Corporation Law of the State of Delaware.

4. The amendment of the certificate of Incorporation herein certified has been duly adopted in accordance with the provisions of Section 242 of the General Corporation Law of the State of Delaware.

-29-

Signed this 11th day of March, 2004.

ALNYLAM PHARMACEUTICALS, INC.

By: /s/ Vincent J. Miles
    -------------------------------
Name: Vincent J. Miles
Title: Senior Vice President, Business Development

-30-

CERTIFICATE OF AMENDMENT
OF
CERTIFICATE OF INCORPORATION
OF
ALNYLAM PHARMACEUTICALS, INC.

Pursuant to Section 242 of the

General Corporation Law of the State of Delaware

Alnylam Pharmaceuticals, Inc. (hereinafter called the "Corporation"), organized and existing under and by virtue of the General Corporation Laws of the State of Delaware, does hereby certify as follows:

At a meeting of the Board of Directors of the Corporation a resolution was duly adopted, pursuant to Section 242 of the General Corporation Law of the State of Delaware, setting forth amendments to the Certificate of Incorporation of the Corporation and declaring said amendments to be advisable. The stockholders of the Corporation duly adopted said amendments by written consent in accordance with Sections 228 and 242 of the General Corporation Law of the State of Delaware. Said amendments have been duly adopted in accordance with
Section 242 of the General Corporation Law of the State of Delaware. The resolution setting forth the amendments is as follows:

RESOLVED: That the Certificate of Incorporation of the Corporation, as amended (the "Certificate of Incorporation") be further amended as follows:

(1) The first paragraph of Article FOURTH of the Certificate of Incorporation is deleted in its entirety and the following two new paragraphs are inserted in lieu thereof:

"That, effective upon the filing of this Certificate of Amendment of Certificate of Incorporation (the "Effective Time"), a one-for-1.9 reverse stock split of the Corporation's Common Stock shall become effective, pursuant to which each 1.9 shares of Common Stock outstanding and held of record by each stockholder of the Corporation (including treasury shares) immediately prior to the Effective Time shall be reclassified and combined into one share of Common Stock automatically and without any action by the holder thereof upon the Effective Time and shall represent one share of Common Stock from and after the Effective Time. No fractional shares of Common Stock shall be issued as a result of such reclassification and combination. In lieu of any fractional shares to which the stockholder would otherwise be entitled, the Corporation shall pay cash equal to such fraction multiplied by the then fair market value of the Common Stock as determined by the Board of Directors of the Corporation.

The total number of shares of all classes of stock which the Corporation has authority to issue is 152,943,580 shares, consisting of 125,000,000 shares of common stock, par value $.0001 per share (the "Common Stock"); and


27,943,580 shares of preferred stock, $0.0001 par value per share, of which 3,000,010 shares have been designated as Series A Convertible Preferred Stock, par value $.0001 per share (the "Series A Preferred Stock"), 16,672,078 shares have been designated as Series B Convertible Preferred Stock, $.0001 par value per share (the "Series B Preferred Stock"), 1,604,825 shares have been designated as Series C Convertible Preferred Stock, $.0001 par value per share (the "Series C Preferred Stock"), and 1,666,667 shares have been designated as Series D Convertible Preferred Stock, $.0001 par value per share (the "Series D Preferred Stock"), and 5,000,000 shares, as of the date hereof, are undesignated.

The Series A Preferred Stock and Series B Preferred Stock are sometimes hereinafter collectively referred to as the "Senior Preferred Stock." The Senior Preferred Stock, the Series C Preferred Stock and the Series D Preferred Stock are sometimes hereinafter collectively referred to as the "Preferred Stock." The undesignated Preferred Stock is hereinafter referred to as "Undesignated Preferred Stock."


IN WITNESS WHEREOF, the Corporation has caused this Certificate of Amendment to be signed by its President and Chief Executive Officer on this 7th day of May, 2004.

ALNYLAM PHARMACEUTICALS, INC.

By: /s/ John M. Maraganore
   ------------------------------------------
John M. Maraganore
President and Chief Executive Officer


Exhibit 4.1

COMMON STOCK COMMON STOCK
NUMBER SHARES
AL

(ALNYLAM PHARMACEUTICALS LOGO)

INCORPORATED UNDER THE LAWS OF THE STATE OF DELAWARE

SEE REVERSE FOR

THIS CERTIFICATE IS TRANSFERABLE IN                       CERTAIN DEFINITIONS
   CANTON, MA, JERSEY CITY, NJ
     AND NEW YORK, NY                                      CUSIP 02043Q 10 7

      THIS CERTIFIES THAT

IS THE OWNER OF

FULLY PAID AND NON-ASSESSABLE SHARES OF THE COMMON STOCK,
PAR VALUE OF $.0001 PER SHARE, OF

ALNYLAM PHARMACEUTICALS, INC.

CERTIFICATE OF STOCK

(hereinafter, the "Corporation") transferable on the books of the Corporation by the holder hereof in person or by duly authorized attorney upon surrender of this certificate properly endorsed.

This certificate and the shares represented hereby are issued and shall be held subject to all of the provisions of the Certificate of Incorporation and Bylaws of the Corporation and all amendments thereto, copies of which are on file with the Transfer Agent, to all of which the holder of this certificate by acceptance hereof assents.

This certificate is not valid unless countersigned and registered by the Transfer Agent and Registrar.

WITNESS the facsimile seal of the Corporation and the facsimile signatures of the duly authorized officers of the Corporation.

Dated:

/s/ Barry Greene     (ALNYLAM PHARMACEUTICALS, INC. SEAL)    /s/ John Maraganore
TREASURER                      2003 DELAWARE                 PRESIDENT

Countersigned and Registered:
EQUISERVE TRUST COMPANY, N.A.
By /s/ Illegible Signature
Transfer Agent
and Registrar

Authorized Signature


ALYNLAM PHARMACEUTICALS, INC.

THE CORPORATION HAS MORE THAN ONE CLASS OF STOCK AUTHORIZED TO BE ISSUED. THE CORPORATION WILL FURNISH WITHOUT CHARGE TO EACH STOCKHOLDER UPON WRITTEN REQUEST A COPY OF THE FULL TEXT OF THE PREFERENCES, VOTING POWERS, QUALIFICATIONS AND SPECIAL AND RELATIVE RIGHTS OF THE SHARES OF EACH CLASS OF STOCK (AND ANY SERIES THEREOF) AUTHORIZED TO BE ISSUED BY THE CORPORATION AS SET FORTH IN THE CERTIFICATE OF INCORPORATION OF THE CORPORATION AND AMENDMENTS THERETO FILED WITH THE SECRETARY OF THE STATE OF DELAWARE.

The following abbreviations, when used in the inscription on the face of this certificate, shall be construed as though they were written out in full according to applicable laws or regulations:

TEN COM -- as tenants in common TEN ENT -- as tenants by the entireties JT TEN -- as joint tenants with right of survivorship and not as tenants in common

UNIF GIFT MIN ACT -- __________________ Custodian __________________
(Cust) (Minor) under Uniform Gifts to Minors Act ___________________________________
(State)

Additional abbreviations may also be used though not in the above list.

FOR VALUE RECEIVED, ___________________ hereby sells, assigns and transfers unto

PLEASE INSERT SOCIAL SECURITY OR OTHER
IDENTIFYING NUMBER OF ASSIGNEE



(PLEASE PRINT OR TYPEWRITE NAME AND ADDRESS, INCLUDING ZIP CODE, OF ASSIGNEE)



Shares of the capital stock represented
by this Certificate, and does hereby irrevocably constitute and appoint Attorney

to transfer the said stock on the books of the Corporation with full power of substitution in the premises.

Dated

X
X

NOTICE: THE SIGNATURE(S) TO THIS ASSIGNMENT MUST CORRESPOND WITH THE NAME(S) AS WRITTEN UPON THE FACE OF THE CERTIFICATE IN EVERY PARTICULAR, WITHOUT ALTERATION OR ENLARGEMENT OR ANY CHANGE WHATEVER.

SIGNATURE(S) GUARANTEED:

By

THE SIGNATURE(S) MUST BE GUARANTEED BY AN ELIGIBLE GUARANTOR INSTITUTION (BANKS, STOCKBROKERS, SAVINGS AND LOAN ASSOCIATIONS AND CREDIT UNIONS WITH MEMBERSHIP IN AN APPROVED SIGNATURE GUARANTEE MEDALLION PROGRAM), PURSUANT TO S.E.C. RULE
17Ad-15.

EXHIBIT 5.1

HALE AND DORR LLP
COUNSELORS AT LAW

HALEDORR.COM

60 STATE STREET - BOSTON, MA 02109

617-526-6000 - FAX 617-526-5000

May 10, 2004

Alnylam Pharmaceuticals, Inc.
300 Third Street
Cambridge, MA 02142

Re: Registration Statement on Form S-1

Ladies and Gentlemen:

This opinion is furnished to you in connection with a Registration Statement on Form S-1 (File No. 333-113162) (the "Registration Statement") filed with the Securities and Exchange Commission (the "Commission") under the Securities Act of 1933, as amended (the "Securities Act"), for the registration of 5,750,000 shares of Common Stock, $.0001 par value per share (the "Shares"), of Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company"), including 750,000 Shares issuable upon exercise of an over-allotment option granted by the Company.

The Shares are to be sold by the Company pursuant to an underwriting agreement (the "Underwriting Agreement") to be entered into by and among the Company, Banc of America Securities LLC, Citigroup Global Markets Inc., Piper Jaffray & Co. and ThinkEquity Partners LLC, as representatives of the several underwriters named in the Underwriting Agreement, the form of which has been filed as Exhibit 1.1 to the Registration Statement.

We are acting as counsel for the Company in connection with the issue and sale by the Company of the Shares. We have examined signed copies of the Registration Statement as filed with the Commission. We have also examined and relied upon the Underwriting Agreement, minutes of meetings of the stockholders and the Board of Directors of the Company as provided to us by the Company, stock record books of the Company as provided to us by the Company, the Certificate of Incorporation and By-Laws of the Company, each as restated and/or amended to date, and such other documents as we have deemed necessary for purposes of rendering the opinions hereinafter set forth.

In our examination of the foregoing documents, we have assumed the genuineness of all signatures, the authenticity of all documents submitted to us as originals, the conformity to original documents of all documents submitted to us as copies, the authenticity of the originals of such latter documents and the legal competence of all signatories to such documents.

We express no opinion herein as to the laws of any state or jurisdiction other than the state laws of the Commonwealth of Massachusetts, the General Corporation Law of the State of Delaware and the federal laws of the United States of America.

BOSTON LONDON MUNICH NEW YORK OXFORD PRINCETON RESTON WALTHAM WASHINGTON

Hale and Dorr LLP is a Massachusetts limited liability partnership. Our London and Oxford offices are operated under a Delaware limited liability partnership.


Alnylam Pharmaceuticals, Inc.
May 10, 2004

Page 2

Based upon and subject to the foregoing, we are of the opinion that the Shares have been duly authorized for issuance and, when the Shares are issued and paid for in accordance with the terms and conditions of the Underwriting Agreement, the Shares will be validly issued, fully paid and nonassessable.

Please note that we are opining only as to the matters expressly set forth herein, and no opinion should be inferred as to any other matters. This opinion is based upon currently existing statutes, rules, regulations and judicial decisions, and we disclaim any obligation to advise you of any change in any of these sources of law or subsequent legal or factual developments which might affect any matters or opinions set forth herein.

We hereby consent to the filing of this opinion with the Commission as an exhibit to the Registration Statement in accordance with the requirements of Item 601(b)(5) of Regulation S-K under the Securities Act and to the use of our name therein and in the related Prospectus under the caption "Legal Matters." In giving such consent, we do not hereby admit that we are in the category of persons whose consent is required under Section 7 of the Securities Act or the rules and regulations of the Commission.

Very truly yours,

/s/ Hale and Dorr LLP
HALE AND DORR LLP


EXHIBIT 10.1

ALNYLAM PHARMACEUTICALS, INC.

2002 EMPLOYEE, DIRECTOR AND CONSULTANT STOCK PLAN, AS AMENDED

1. DEFINITIONS.

Unless otherwise specified or unless the context otherwise requires, the following terms, as used in this Alnylam Pharmaceuticals, Inc. 2002 Employee, Director and Consultant Stock Plan, have the following meanings:

Administrator means the Board of Directors, unless it has delegated power to act on its behalf to the Committee, in which case the Administrator means the Committee.

Affiliate means a corporation which, for purposes of Section 424 of the Code, is a parent or subsidiary of the Company, direct or indirect.

Board of Directors means the Board of Directors of the Company.

Change of Control means a merger or consolidation of the Company whether or not approved by the Board of Directors, other than a merger or consolidation which would result in the voting securities of the Company outstanding immediately prior thereto continuing to represent (either by remaining outstanding or by being converted into voting securities of the surviving entity or the parent of such corporation) at least 50% of the total voting power represented by the voting securities of the Company or such surviving entity or parent of such corporation outstanding immediately after such merger or consolidation, or the stockholders of the Company approve an agreement for the sale or disposition by the Company of all or substantially all of the Company's assets.

Code means the United States Internal Revenue Code of 1986, as amended.

Committee means the committee of the Board of Directors to which the Board of Directors has delegated power to act under or pursuant to the provisions of the Plan.

Common Stock means shares of the Company's common stock, $.0001 par value per share.

Company means Alnylam Pharmaceuticals, Inc., a Delaware corporation.

Disability or Disabled means permanent and total disability as defined in Section 22(e)(3) of the Code.


Employee means any employee of the Company or of an Affiliate (including, without limitation, an employee who is also serving as an officer or director of the Company or of an Affiliate), designated by the Administrator to be eligible to be granted one or more Stock Rights under the Plan.

Fair Market Value of a Share of Common Stock means:

(1) If the Common Stock is listed on a national securities exchange or traded in the over-the-counter market and sales prices are regularly reported for the Common Stock, the closing or last price of the Common Stock on the Composite Tape or other comparable reporting system for the trading day immediately preceding the applicable date;

(2) If the Common Stock is not traded on a national securities exchange but is traded on the over-the-counter market, if sales prices are not regularly reported for the Common Stock for the trading day referred to in clause (1), and if bid and asked prices for the Common Stock are regularly reported, the mean between the bid and the asked price for the Common Stock at the close of trading in the over- the-counter market for the trading day on which Common Stock was traded immediately preceding the applicable date; and

(3) If the Common Stock is neither listed on a national securities exchange nor traded in the over-the-counter market, such value as the Administrator, in good faith, shall determine.

ISO means an option meant to qualify as an incentive stock option under Section 422 of the Code.

Non-Qualified Option means an option which is not intended to qualify as an ISO.

Option means an ISO or Non-Qualified Option granted under the Plan.

Option Agreement means an agreement between the Company and a Participant delivered pursuant to the Plan, in such form as the Administrator shall approve.

Participant means an Employee, director or consultant of the Company or an Affiliate to whom one or more Stock Rights are granted under the Plan. As used herein, "Participant" shall include "Participant's Survivors" where the context requires.

Plan means this Alnylam Pharmaceuticals, Inc. 2002 Employee, Director and Consultant Stock Plan.

Shares means shares of the Common Stock as to which Stock Rights have been or may be granted under the Plan or any shares of capital stock into which the Shares are changed or for which they are exchanged within the provisions of Paragraph 3

2

\
of the Plan. The Shares issued under the Plan may be authorized and unissued shares or shares held by the Company in its treasury, or both.

Stock Grant means a grant by the Company of Shares under the Plan.

Stock Grant Agreement means an agreement between the Company and a Participant delivered pursuant to the Plan, in such form as the Administrator shall approve.

Stock Right means a right to Shares of the Company granted pursuant to the Plan -- an ISO, a Non-Qualified Option or a Stock Grant.

Survivor means a deceased Participant's legal representatives and/or any person or persons who acquired the Participant's rights to a Stock Right by will or by the laws of descent and distribution.

2. PURPOSES OF THE PLAN.

The Plan is intended to encourage ownership of Shares by Employees and directors of and certain consultants to the Company in order to attract such people, to induce them to work for the benefit of the Company or of an Affiliate and to provide additional incentive for them to promote the success of the Company or of an Affiliate. The Plan provides for the granting of ISOs, Non-Qualified Options and Stock Grants.

3. SHARES SUBJECT TO THE PLAN.

(a) The number of Shares which may be issued from time to time pursuant to this Plan shall be 1,506,503, or the equivalent of such number of Shares after the Administrator, in its sole discretion, has interpreted the effect of any stock split, stock dividend, combination, recapitalization or similar transaction in accordance with Paragraph 23 of the Plan.

If an Option ceases to be "outstanding", in whole or in part, or if the Company shall reacquire any Shares issued pursuant to a Stock Grant, the Shares which were subject to such Option and any Shares so reacquired by the Company shall be available for the granting of other Stock Rights under the Plan. Any Option shall be treated as "outstanding" until such Option is exercised in full, or terminates or expires under the provisions of the Plan, or by agreement of the parties to the pertinent Option Agreement.

4. ADMINISTRATION OF THE PLAN.

The Administrator of the Plan will be the Board of Directors, except to the extent the Board of Directors delegates its authority to the Committee, in which case the Committee shall be the Administrator. Subject to the provisions of the Plan, the Administrator is authorized to:

3

a. Interpret the provisions of the Plan or of any Option or Stock Grant and to make all rules and determinations which it deems necessary or advisable for the administration of the Plan;

b. Determine which Employees, directors and consultants shall be granted Stock Rights;

c. Determine the number of Shares for which a Stock Right or Stock Rights shall be granted;

d. Specify the terms and conditions upon which a Stock Right or Stock Rights may be granted; and

e. Adopt any sub-plans applicable to residents of any specified jurisdiction as it deems necessary or appropriate in order to comply with or take advantage of any tax laws applicable to the Company or to Plan Participants or to otherwise facilitate the administration of the Plan, which sub-plans may include additional restrictions or conditions applicable to Options or Shares acquired upon exercise of Options.

provided, however, that all such interpretations, rules, determinations, terms and conditions shall be made and prescribed in the context of preserving the tax status under Section 422 of the Code of those Options which are designated as ISOs. Subject to the foregoing, the interpretation and construction by the Administrator of any provisions of the Plan or of any Stock Right granted under it shall be final, unless otherwise determined by the Board of Directors, if the Administrator is the Committee. In addition, if the Administrator is the Committee, the Board of Directors may take any action under the Plan that would otherwise be the responsibility of the Committee.

If permissible under applicable law, the Board of Directors or the Committee may allocate all or any portion of its responsibilities and powers to any one or more of its members and may delegate all or any portion of its responsibilities and powers to any other person selected by it. Any such allocation or delegation may be revoked by the Board of Directors or the Committee at any time.

5. ELIGIBILITY FOR PARTICIPATION.

The Administrator will, in its sole discretion, name the Participants in the Plan, provided, however, that each Participant must be an Employee, director or consultant of the Company or of an Affiliate at the time a Stock Right is granted. Notwithstanding the foregoing, the Administrator may authorize the grant of a Stock Right to a person not then an Employee, director or consultant of the Company or of an Affiliate; provided, however, that the actual grant of such Stock Right shall be conditioned upon such person becoming eligible to become a Participant at or prior to the time of the execution of the Agreement evidencing such Stock Right. ISOs may be granted only to Employees. Non-Qualified Options and Stock Grants may

4

be granted to any Employee, director or consultant of the Company or an Affiliate. The granting of any Stock Right to any individual shall neither entitle that individual to, nor disqualify him or her from, participation in any other grant of Stock Rights.

6. TERMS AND CONDITIONS OF OPTIONS.

Each Option shall be set forth in writing in an Option Agreement, duly executed by the Company and, to the extent required by law or requested by the Company, by the Participant. The Administrator may provide that Options be granted subject to such terms and conditions, consistent with the terms and conditions specifically required under this Plan, as the Administrator may deem appropriate including, without limitation, subsequent approval by the shareholders of the Company of this Plan or any amendments thereto. The Option Agreements shall be subject to at least the following terms and conditions:

A. Non-Qualified Options: Each Option intended to be a Non-Qualified Option shall be subject to the terms and conditions which the Administrator determines to be appropriate and in the best interest of the Company, subject to the following minimum standards for any such Non-Qualified Option:

a. Option Price: Each Option Agreement shall state the option price (per share) of the Shares covered by each Option, which option price shall be determined by the Administrator but shall not be less than the par value per share of Common Stock.

b. Each Option Agreement shall state the number of Shares to which it pertains;

c. Each Option Agreement shall state the date or dates on which it first is exercisable and the date after which it may no longer be exercised, and may provide that the Option rights accrue or become exercisable in installments over a period of months or years, or upon the occurrence of certain conditions or the attainment of stated goals or events; and

d. Exercise of any Option may be conditioned upon the Participant's execution of a Share purchase agreement in form satisfactory to the Administrator providing for certain protections for the Company and its other shareholders, including requirements that:

i. The Participant's or the Participant's Survivors' right to sell or transfer the Shares may be restricted; and

ii. The Participant or the Participant's Survivors may be required to execute letters of investment intent and must also acknowledge that the Shares will bear legends noting any applicable restrictions.

5

B. ISOs: Each Option intended to be an ISO shall be issued only to an Employee and be subject to the following terms and conditions, with such additional restrictions or changes as the Administrator determines are appropriate but not in conflict with Section 422 of the Code and relevant regulations and rulings of the Internal Revenue Service:

a. Minimum standards: The ISO shall meet the minimum standards required of Non-Qualified Options, as described in Paragraph 6(A) above, except clause (a) thereunder.

b. Option Price: Immediately before the ISO is granted, if the Participant owns, directly or by reason of the applicable attribution rules in Section 424(d) of the Code:

i. 10% or less of the total combined voting power of all classes of stock of the Company or an Affiliate, the Option price per share of the Shares covered by each ISO shall not be less than 100% of the Fair Market Value per share of the Shares on the date of the grant of the Option; or

ii. More than 10% of the total combined voting power of all classes of stock of the Company or an Affiliate, the Option price per share of the Shares covered by each ISO shall not be less than 110% of the said Fair Market Value on the date of grant.

c. Term of Option: For Participants who own:

i. 10% or less of the total combined voting power of all classes of stock of the Company or an Affiliate, each ISO shall terminate not more than ten years from the date of the grant or at such earlier time as the Option Agreement may provide; or

ii. More than 10% of the total combined voting power of all classes of stock of the Company or an Affiliate, each ISO shall terminate not more than five years from the date of the grant or at such earlier time as the Option Agreement may provide.

d. Limitation on Yearly Exercise: The Option Agreements shall restrict the amount of ISOs which may become exercisable in any calendar year (under this or any other ISO plan of the Company or an Affiliate) so that the aggregate Fair Market Value (determined at the time each ISO is granted) of the stock with respect to which ISOs are exercisable for the first time by the Participant in any calendar year does not exceed $100,000.

6

7. TERMS AND CONDITIONS OF STOCK GRANTS.

Each offer of a Stock Grant to a Participant shall state the date prior to which the Stock Grant must be accepted by the Participant, and the principal terms of each Stock Grant shall be set forth in a Stock Grant Agreement, duly executed by the Company and, to the extent required by law or requested by the Company, by the Participant. The Stock Grant Agreement shall be in a form approved by the Administrator and shall contain terms and conditions which the Administrator determines to be appropriate and in the best interest of the Company, subject to the following minimum standards:

(a) Each Stock Grant Agreement shall state the purchase price (per share), if any, of the Shares covered by each Stock Grant, which purchase price shall be determined by the Administrator but shall not be less than the minimum consideration required by the Delaware General Corporation Law on the date of the grant of the Stock Grant;

(b) Each Stock Grant Agreement shall state the number of Shares to which the Stock Grant pertains; and

(c) Each Stock Grant Agreement shall include the terms of any right of the Company to restrict or reacquire the Shares subject to the Stock Grant, including the time and events upon which such reacquisition rights shall accrue and the purchase price therefor, if any.

8. EXERCISE OF OPTIONS AND ISSUE OF SHARES.

An Option (or any part or installment thereof) shall be exercised by giving written notice to the Company or its designee, together with provision for payment of the full purchase price in accordance with this Paragraph for the Shares as to which the Option is being exercised, and upon compliance with any other condition(s) set forth in the Option Agreement. Such notice shall be signed by the person exercising the Option, shall state the number of Shares with respect to which the Option is being exercised and shall contain any representation required by the Plan or the Option Agreement. Payment of the purchase price for the Shares as to which such Option is being exercised shall be made (a) in United States dollars in cash or by check, or (b) at the discretion of the Administrator, through delivery of shares of Common Stock having a Fair Market Value equal as of the date of the exercise to the cash exercise price of the Option and held for at least six months, or (c) at the discretion of the Administrator, by delivery of the grantee's personal note, for full, partial or no recourse, bearing interest payable not less than annually at market rate on the date of exercise and at no less than 100% of the applicable Federal rate, as defined in Section 1274(d) of the Code, with or without the pledge of such Shares as collateral, or (d) at the discretion of the Administrator, in accordance with a cashless exercise program established with a securities brokerage firm, and approved by the Administrator, or (e) at the discretion of the Administrator, by any combination of (a), (b), (c) and (d) above. Notwithstanding the foregoing, the Administrator shall accept only such payment on exercise of an ISO as is permitted by Section 422 of the Code.

7

The Company shall then reasonably promptly deliver the Shares as to which such Option was exercised to the Participant (or to the Participant's Survivors, as the case may be). In determining what constitutes "reasonably promptly," it is expressly understood that the issuance and delivery of the Shares may be delayed by the Company in order to comply with any law or regulation (including, without limitation, state securities or "blue sky" laws) which requires the Company to take any action with respect to the Shares prior to their issuance. The Shares shall, upon delivery, be fully paid, non-assessable Shares.

The Administrator shall have the right to accelerate the date of exercise of any installment of any Option; provided that the Administrator shall not accelerate the exercise date of any installment of any Option granted to an Employee as an ISO (and not previously converted into a Non-Qualified Option pursuant to Paragraph 26) if such acceleration would violate the annual vesting limitation contained in Section 422(d) of the Code, as described in Paragraph 6.B.d.

The Administrator may, in its discretion, amend any term or condition of an outstanding Option provided (i) such term or condition as amended is permitted by the Plan, (ii) any such amendment shall be made only with the consent of the Participant to whom the Option was granted, or in the event of the death of the Participant, the Participant's Survivors, if the amendment is adverse to the Participant, and (iii) any such amendment of any ISO shall be made only after the Administrator determines whether such amendment would constitute a "modification" of any Option which is an ISO (as that term is defined in Section 424(h) of the Code) or would cause any adverse tax consequences for the holder of such ISO.

9. ACCEPTANCE OF STOCK GRANT AND ISSUE OF SHARES.

A Stock Grant (or any part or installment thereof) shall be accepted by executing the Stock Grant Agreement and delivering it to the Company or its designee, together with provision for payment of the full purchase price, if any, in accordance with this Paragraph for the Shares as to which such Stock Grant is being accepted, and upon compliance with any other conditions set forth in the Stock Grant Agreement. Payment of the purchase price for the Shares as to which such Stock Grant is being accepted shall be made (a) in United States dollars in cash or by check, or (b) at the discretion of the Administrator, through delivery of shares of Common Stock held for at least six months and having a Fair Market Value equal as of the date of acceptance of the Stock Grant to the purchase price of the Stock Grant, or (c) at the discretion of the Administrator, by delivery of the grantee's personal note, for full or partial recourse as determined by the Administrator, bearing interest payable not less than annually at no less than 100% of the applicable Federal rate, as defined in
Section 1274(d) of the Code, or (d) at the discretion of the Administrator, by any combination of (a), (b) and (c) above.

The Company shall then reasonably promptly deliver the Shares as to which such Stock Grant was accepted to the Participant (or to the Participant's Survivors, as the case may be), subject to any escrow provision set forth in the Stock Grant Agreement. In determining what constitutes "reasonably promptly," it is expressly understood that the issuance and delivery of the Shares may be delayed by the Company in order to comply with any law or regulation

8

(including, without limitation, state securities or "blue sky" laws) which requires the Company to take any action with respect to the Shares prior to their issuance.

The Administrator may, in its discretion, amend any term or condition of an outstanding Stock Grant or Stock Grant Agreement provided (i) such term or condition as amended is permitted by the Plan, and (ii) any such amendment shall be made only with the consent of the Participant to whom the Stock Grant was made, if the amendment is adverse to the Participant.

10. RIGHTS AS A SHAREHOLDER.

No Participant to whom a Stock Right has been granted shall have rights as a shareholder with respect to any Shares covered by such Stock Right, except after due exercise of the Option or acceptance of the Stock Grant and tender of the full purchase price, if any, for the Shares being purchased pursuant to such exercise or acceptance and registration of the Shares in the Company's share register in the name of the Participant.

11. ASSIGNABILITY AND TRANSFERABILITY OF STOCK RIGHTS.

By its terms, a Stock Right granted to a Participant shall not be transferable by the Participant other than (i) by will or by the laws of descent and distribution, or (ii) as approved by the Administrator in its discretion and set forth in the applicable Option Agreement or Stock Grant Agreement. Notwithstanding the foregoing, an ISO transferred except in compliance with clause (i) above shall no longer qualify as an ISO. The designation of a beneficiary of a Stock Right by a Participant, with the prior approval of the Administrator and in such form as the Administrator shall prescribe, shall not be deemed a transfer prohibited by this Paragraph. Except as provided above, a Stock Right shall only be exercisable or may only be accepted, during the Participant's lifetime, only by such Participant (or by his or her legal representative) and shall not be assigned, pledged or hypothecated in any way (whether by operation of law or otherwise) and shall not be subject to execution, attachment or similar process. Any attempted transfer, assignment, pledge, hypothecation or other disposition of any Stock Right or of any rights granted thereunder contrary to the provisions of this Plan, or the levy of any attachment or similar process upon a Stock Right, shall be null and void.

12. EFFECT ON OPTIONS OF TERMINATION OF SERVICE OTHER THAN "FOR CAUSE" OR DEATH OR DISABILITY.

Except as otherwise provided in a Participant's Option Agreement, in the event of a termination of service (whether as an employee, director or consultant) with the Company or an Affiliate before the Participant has exercised an Option, the following rules apply:

a. A Participant who ceases to be an employee, director or consultant of the Company or of an Affiliate (for any reason other than termination "for cause", Disability, or death for which events there are special rules in Paragraphs 13, 14,

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and 15, respectively), may exercise any Option granted to him or her to the extent that the Option is exercisable on the date of such termination of service, but only within such term as the Administrator has designated in a Participant's Option Agreement.

b. Except as provided in Subparagraph (c) below, or Paragraph 14 or 15, in no event may an Option intended to be an ISO, be exercised later than three months after the Participant's termination of employment.

c. The provisions of this Paragraph, and not the provisions of Paragraph 14 or 15, shall apply to a Participant who subsequently becomes Disabled or dies after the termination of employment, director status or consultancy, provided, however, in the case of a Participant's Disability or death within three months after the termination of employment, director status or consultancy, the Participant or the Participant's Survivors may exercise the Option within one year after the date of the Participant's termination of service, but in no event after the date of expiration of the term of the Option.

d. Notwithstanding anything herein to the contrary, if subsequent to a Participant's termination of employment, termination of director status or termination of consultancy, but prior to the exercise of an Option, the Board of Directors determines that, either prior or subsequent to the Participant's termination, the Participant engaged in conduct which would constitute "cause", then such Participant shall forthwith cease to have any right to exercise any Option.

e. A Participant to whom an Option has been granted under the Plan who is absent from work with the Company or with an Affiliate because of temporary disability (any disability other than a permanent and total Disability as defined in Paragraph 1 hereof), or who is on leave of absence for any purpose, shall not, during the period of any such absence, be deemed, by virtue of such absence alone, to have terminated such Participant's employment, director status or consultancy with the Company or with an Affiliate, except as the Administrator may otherwise expressly provide.

f. Except as required by law or as set forth in a Participant's Option Agreement, Options granted under the Plan shall not be affected by any change of a Participant's status within or among the Company and any Affiliates, so long as the Participant continues to be an employee, director or consultant of the Company or any Affiliate.

13. EFFECT ON OPTIONS OF TERMINATION OF SERVICE "FOR CAUSE".

Except as otherwise provided in a Participant's Option Agreement, the following rules apply if the Participant's service (whether as an employee, director or consultant) with the Company or an Affiliate is terminated "for cause" prior to the time that all his or her outstanding Options have been exercised:

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a. All outstanding and unexercised Options as of the time the Participant is notified his or her service is terminated "for cause" will immediately be forfeited.

b. For purposes of this Plan, "cause" shall include (and is not limited to) dishonesty with respect to the Company or any Affiliate, insubordination, substantial malfeasance or non-feasance of duty, unauthorized disclosure of confidential information, breach by the Participant of any provision of any employment, consulting, advisory, nondisclosure, non-competition or similar agreement between the Participant and the Company, and conduct substantially prejudicial to the business of the Company or any Affiliate. The determination of the Administrator as to the existence of "cause" will be conclusive on the Participant and the Company.

c. "Cause" is not limited to events which have occurred prior to a Participant's termination of service, nor is it necessary that the Administrator's finding of "cause" occur prior to termination. If the Administrator determines, subsequent to a Participant's termination of service but prior to the exercise of an Option, that either prior or subsequent to the Participant's termination the Participant engaged in conduct which would constitute "cause", then the right to exercise any Option is forfeited.

d. Any definition in an agreement between the Participant and the Company or an Affiliate, which contains a conflicting definition of "cause" for termination and which is in effect at the time of such termination, shall supersede the definition in this Plan with respect to that Participant.

14. EFFECT ON OPTIONS OF TERMINATION OF SERVICE FOR DISABILITY.

Except as otherwise provided in a Participant's Option Agreement, a Participant who ceases to be an employee, director or consultant of the Company or of an Affiliate by reason of Disability may exercise any Option granted to such Participant:

a. To the extent that the Option has become exercisable but has not been exercised on the date of Disability; and

b. In the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of Disability of any additional vesting rights that would have accrued on the next vesting date had the Participant not become Disabled. The proration shall be based upon the number of days accrued in the current vesting period prior to the date of Disability.

A Disabled Participant may exercise such rights only within the period ending one year after the date of the Participant's termination of employment, directorship or consultancy, as the case may be, notwithstanding that the Participant might have been able to exercise the Option as

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to some or all of the Shares on a later date if the Participant had not become Disabled and had continued to be an employee, director or consultant or, if earlier, within the originally prescribed term of the Option.

The Administrator shall make the determination both of whether Disability has occurred and the date of its occurrence (unless a procedure for such determination is set forth in another agreement between the Company and such Participant, in which case such procedure shall be used for such determination). If requested, the Participant shall be examined by a physician selected or approved by the Administrator, the cost of which examination shall be paid for by the Company.

15. EFFECT ON OPTIONS OF DEATH WHILE AN EMPLOYEE, DIRECTOR OR CONSULTANT.

Except as otherwise provided in a Participant's Option Agreement, in the event of the death of a Participant while the Participant is an employee, director or consultant of the Company or of an Affiliate, such Option may be exercised by the Participant's Survivors:

a. To the extent that the Option has become exercisable but has not been exercised on the date of death; and

b. In the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of death of any additional vesting rights that would have accrued on the next vesting date had the Participant not died. The proration shall be based upon the number of days accrued in the current vesting period prior to the Participant's date of death.

If the Participant's Survivors wish to exercise the Option, they must take all necessary steps to exercise the Option within one year after the date of death of such Participant, notwithstanding that the decedent might have been able to exercise the Option as to some or all of the Shares on a later date if he or she had not died and had continued to be an employee, director or consultant or, if earlier, within the originally prescribed term of the Option.

16. EFFECT OF TERMINATION OF SERVICE ON STOCK GRANTS.

In the event of a termination of service (whether as an employee, director or consultant) with the Company or an Affiliate for any reason before the Participant has accepted a Stock Grant, such offer shall terminate.

For purposes of this Paragraph 16 and Paragraph 17 below, a Participant to whom a Stock Grant has been offered and accepted under the Plan who is absent from work with the Company or with an Affiliate because of temporary disability (any disability other than a permanent and total Disability as defined in Paragraph 1 hereof), or who is on leave of absence for any purpose, shall not, during the period of any such absence, be deemed, by virtue of such absence alone, to

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have terminated such Participant's employment, director status or consultancy with the Company or with an Affiliate, except as the Administrator may otherwise expressly provide.

In addition, for purposes of this Paragraph 16 and Paragraph 17 below, any change of employment or other service within or among the Company and any Affiliates shall not be treated as a termination of employment, director status or consultancy so long as the Participant continues to be an employee, director or consultant of the Company or any Affiliate.

17. EFFECT ON STOCK GRANTS OF TERMINATION OF SERVICE OTHER THAN "FOR CAUSE" OR DEATH OR DISABILITY.

Except as otherwise provided in a Participant's Stock Grant Agreement, in the event of a termination of service (whether as an employee, director or consultant), other than termination "for cause," Disability, or death for which events there are special rules in Paragraphs 18,19, and 20, respectively, before all Company rights of repurchase shall have lapsed, then the Company shall have the right to repurchase that number of Shares subject to a Stock Grant as to which the Company's repurchase rights have not lapsed.

18. EFFECT ON STOCK GRANTS OF TERMINATION OF SERVICE "FOR CAUSE".

Except as otherwise provided in a Participant's Stock Grant Agreement, the following rules apply if the Participant's service (whether as an employee, director or consultant) with the Company or an Affiliate is terminated "for cause":

a. All Shares subject to any Stock Grant shall be immediately subject to repurchase by the Company at the purchase price, if any, thereof.

b. For purposes of this Plan, "cause" shall include (and is not limited to) dishonesty with respect to the employer, insubordination, substantial malfeasance or non-feasance of duty, unauthorized disclosure of confidential information, breach by the Participant of any provision of any employment, consulting, advisory, nondisclosure, non-competition or similar agreement between the Participant and the Company, and conduct substantially prejudicial to the business of the Company or any Affiliate. The determination of the Administrator as to the existence of "cause" will be conclusive on the Participant and the Company.

c. "Cause" is not limited to events which have occurred prior to a Participant's termination of service, nor is it necessary that the Administrator's finding of "cause" occur prior to termination. If the Administrator determines, subsequent to a Participant's termination of service, that either prior or subsequent to the Participant's termination the Participant engaged in conduct which would constitute "cause," then the Company's right to repurchase all of such Participant's Shares shall apply.

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d. Any definition in an agreement between the Participant and the Company or an Affiliate, which contains a conflicting definition of "cause" for termination and which is in effect at the time of such termination, shall supersede the definition in this Plan with respect to that Participant.

19. EFFECT ON STOCK GRANTS OF TERMINATION OF SERVICE FOR DISABILITY.

Except as otherwise provided in a Participant's Stock Grant Agreement, the following rules apply if a Participant ceases to be an employee, director or consultant of the Company or of an Affiliate by reason of Disability: to the extent the Company's rights of repurchase have not lapsed on the date of Disability, they shall be exercisable; provided, however, that in the event such rights of repurchase lapse periodically, such rights shall lapse to the extent of a pro rata portion of the Shares subject to such Stock Grant through the date of Disability as would have lapsed had the Participant not become Disabled. The proration shall be based upon the number of days accrued prior to the date of Disability.

The Administrator shall make the determination both of whether Disability has occurred and the date of its occurrence (unless a procedure for such determination is set forth in another agreement between the Company and such Participant, in which case such procedure shall be used for such determination). If requested, the Participant shall be examined by a physician selected or approved by the Administrator, the cost of which examination shall be paid for by the Company.

20. EFFECT ON STOCK GRANTS OF DEATH WHILE AN EMPLOYEE, DIRECTOR OR CONSULTANT.

Except as otherwise provided in a Participant's Stock Grant Agreement, the following rules apply in the event of the death of a Participant while the Participant is an employee, director or consultant of the Company or of an Affiliate: to the extent the Company's rights of repurchase have not lapsed on the date of death, they shall be exercisable; provided, however, that in the event such rights of repurchase lapse periodically, such rights shall lapse to the extent of a pro rata portion of the Shares subject to such Stock Grant through the date of death as would have lapsed had the Participant not died. The proration shall be based upon the number of days accrued prior to the Participant's death.

21. PURCHASE FOR INVESTMENT.

Unless the offering and sale of the Shares to be issued upon the particular exercise or acceptance of a Stock Right shall have been effectively registered under the Securities Act of 1933, as now in force or hereafter amended (the "1933 Act"), the Company shall be under no obligation to issue the Shares covered by such exercise unless and until the following conditions have been fulfilled:

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a. The person(s) who exercise(s) or accept(s) such Stock Right shall warrant to the Company, prior to the receipt of such Shares, that such person(s) are acquiring such Shares for their own respective accounts, for investment, and not with a view to, or for sale in connection with, the distribution of any such Shares, in which event the person(s) acquiring such Shares shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing their Shares issued pursuant to such exercise or such grant:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is then available, and (2) there shall have been compliance with all applicable state securities laws."

b. At the discretion of the Administrator, the Company shall have received an opinion of its counsel that the Shares may be issued upon such particular exercise or acceptance in compliance with the 1933 Act without registration thereunder.

22. DISSOLUTION OR LIQUIDATION OF THE COMPANY.

Upon the dissolution or liquidation of the Company, all Options granted under this Plan which as of such date shall not have been exercised and all Stock Grants which have not been accepted will terminate and become null and void; provided, however, that if the rights of a Participant or a Participant's Survivors have not otherwise terminated and expired, the Participant or the Participant's Survivors will have the right immediately prior to such dissolution or liquidation to exercise or accept any Stock Right to the extent that the Stock Right is exercisable or subject to acceptance as of the date immediately prior to such dissolution or liquidation.

23. ADJUSTMENTS.

Upon the occurrence of any of the following events, a Participant's rights with respect to any Stock Right granted to him or her hereunder shall be adjusted as hereinafter provided, unless otherwise specifically provided in a Participant's Option Agreement or Stock Grant Agreement:

A. Stock Dividends and Stock Splits. If (i) the shares of Common Stock shall be subdivided or combined into a greater or smaller number of shares or if the Company shall issue any shares of Common Stock as a stock dividend on its outstanding Common Stock, or (ii) additional shares or new or different shares or other securities of the Company or other non-cash assets are distributed with respect to such shares of Common Stock, the number of shares of Common Stock deliverable upon the exercise or acceptance of such Stock Right may be

15

appropriately increased or decreased proportionately, and appropriate adjustments may be made including, in the purchase price per share, to reflect such events.

B. Corporate Transactions. If the Company is to be consolidated with or acquired by another entity in a merger, sale of all or substantially all of the Company's assets other than a transaction to merely change the state of incorporation (a "Corporate Transaction"), the Administrator or the board of directors of any entity assuming the obligations of the Company hereunder (the "Successor Board"), shall, as to outstanding Options, either (i) make appropriate provision for the continuation of such Options by substituting on an equitable basis for the Shares then subject to such Options either the consideration payable with respect to the outstanding shares of Common Stock in connection with the Corporate Transaction or securities of any successor or acquiring entity (provided, that, at the discretion of the Administrator, all unvested Options shall be made fully or partially exercisable for purposes of this Subparagraph upon the closing of the Corporate Transaction); or (ii) upon written notice to the Participants, provide that all Options must be exercised (either to the extent then exercisable or, at the discretion of the Administrator, all Options being made fully or partially exercisable for purposes of this Subparagraph), within a specified number of days of the date of such notice, at the end of which period the Options shall terminate; or (iii) terminate all Options in exchange for a cash payment equal to the excess of the Fair Market Value of the Shares subject to such Options (either to the extent then exercisable or, at the discretion of the Administrator, all Options being made fully or partially exercisable for purposes of this Subparagraph) over the exercise price thereof.

With respect to outstanding Stock Grants, the Administrator or the Successor Board, shall either (i) make appropriate provisions for the continuation of such Stock Grants by substituting on an equitable basis for the Shares then subject to such Stock Grants either the consideration payable with respect to the outstanding Shares of Common Stock in connection with the Corporate Transaction or securities of any successor or acquiring entity; or
(ii) upon written notice to the Participants, provide that all Stock Grants must be accepted (to the extent then subject to acceptance) within a specified number of days of the date of such notice, at the end of which period the offer of the Stock Grants shall terminate; or (iii) terminate all Stock Grants in exchange for a cash payment equal to the excess of the Fair Market Value of the Shares subject to such Stock Grants over the purchase price thereof, if any. In addition, in the event of a Corporate Transaction, the Administrator may waive any or all Company repurchase rights with respect to outstanding Stock Grants.

Notwithstanding the foregoing, individual Option Agreements and Stock Grant Agreements may provide for different adjustments than those set forth herein.

C. Recapitalization or Reorganization. In the event of a recapitalization or reorganization of the Company other than a Corporate Transaction pursuant to which securities of the Company or of another corporation are issued with respect to the outstanding shares of Common Stock, a Participant upon exercising or accepting a Stock Right after the recapitalization or reorganization shall be entitled to receive for the purchase price paid upon such exercise or acceptance the number of replacement securities which would have been

16

received if such Stock Right had been exercised or accepted prior to such recapitalization or reorganization.

D. Modification of ISOs. Notwithstanding the foregoing, any adjustments made pursuant to Subparagraph A, B or C above with respect to ISOs shall be made only after the Administrator determines whether such adjustments would constitute a "modification" of such ISOs (as that term is defined in
Section 424(h) of the Code) or would cause any adverse tax consequences for the holders of such ISOs. If the Administrator determines that such adjustments made with respect to ISOs would constitute a modification of such ISOs, it may refrain from making such adjustments, unless the holder of an ISO specifically requests in writing that such adjustment be made and such writing indicates that the holder has full knowledge of the consequences of such "modification" on his or her income tax treatment with respect to the ISO.

24. ISSUANCES OF SECURITIES.

Except as expressly provided herein, no issuance by the Company of shares of stock of any class, or securities convertible into shares of stock of any class, shall affect, and no adjustment by reason thereof shall be made with respect to, the number or price of shares subject to Stock Rights. Except as expressly provided herein, no adjustments shall be made for dividends paid in cash or in property (including without limitation, securities) of the Company prior to any issuance of Shares pursuant to a Stock Right.

25. FRACTIONAL SHARES.

No fractional shares shall be issued under the Plan and the person exercising a Stock Right shall receive from the Company cash in lieu of such fractional shares equal to the Fair Market Value thereof.

26. CONVERSION OF ISOs INTO NON-QUALIFIED OPTIONS: TERMINATION OF ISOs.

The Administrator, at the written request of any Participant, may in its discretion take such actions as may be necessary to convert such Participant's ISOs (or any portions thereof) that have not been exercised on the date of conversion into Non-Qualified Options at any time prior to the expiration of such ISOs, regardless of whether the Participant is an employee of the Company or an Affiliate at the time of such conversion. At the time of such conversion, the Administrator (with the consent of the Participant) may impose such conditions on the exercise of the resulting Non-Qualified Options as the Administrator in its discretion may determine, provided that such conditions shall not be inconsistent with this Plan. Nothing in the Plan shall be deemed to give any Participant the right to have such Participant's ISOs converted into Non-Qualified Options, and no such conversion shall occur until and unless the Administrator

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takes appropriate action. The Administrator, with the consent of the Participant, may also terminate any portion of any ISO that has not been exercised at the time of such conversion.

27. WITHHOLDING.

In the event that any federal, state, or local income taxes, employment taxes, Federal Insurance Contributions Act ("F.I.C.A.") withholdings or other amounts are required by applicable law or governmental regulation to be withheld from the Participant's salary, wages or other remuneration in connection with the exercise or acceptance of a Stock Right or in connection with a Disqualifying Disposition (as defined in Paragraph 28) or upon the lapsing of any right of repurchase, the Company may withhold from the Participant's compensation, if any, or may require that the Participant advance in cash to the Company, or to any Affiliate of the Company which employs or employed the Participant, the statutory minimum amount of such withholdings unless a different withholding arrangement, including the use of shares of the Company's Common Stock or a promissory note, is authorized by the Administrator (and permitted by law). For purposes hereof, the fair market value of the shares withheld for purposes of payroll withholding shall be determined in the manner provided in Paragraph 1 above, as of the most recent practicable date prior to the date of exercise. If the fair market value of the shares withheld is less than the amount of payroll withholdings required, the Participant may be required to advance the difference in cash to the Company or the Affiliate employer. The Administrator in its discretion may condition the exercise of an Option for less than the then Fair Market Value on the Participant's payment of such additional withholding.

28. NOTICE TO COMPANY OF DISQUALIFYING DISPOSITION.

Each Employee who receives an ISO must agree to notify the Company in writing immediately after the Employee makes a Disqualifying Disposition of any shares acquired pursuant to the exercise of an ISO. A Disqualifying Disposition is defined in Section 424(c) of the Code and includes any disposition (including any sale or gift) of such shares before the later of (a) two years after the date the Employee was granted the ISO, or (b) one year after the date the Employee acquired Shares by exercising the ISO, except as otherwise provided in
Section 424(c) of the Code. If the Employee has died before such stock is sold, these holding period requirements do not apply and no Disqualifying Disposition can occur thereafter.

29. TERMINATION OF THE PLAN.

The Plan will terminate on 10 years after adoption, the date which is ten years from the earlier of the date of its adoption by the Board of Directors and the date of its approval by the shareholders. The Plan may be terminated at an earlier date by vote of the shareholders or the Board of Directors of the Company; provided, however, that any such earlier termination shall not affect any Option Agreements or Stock Grant Agreements executed prior to the effective date of such termination.

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30. AMENDMENT OF THE PLAN AND AGREEMENTS.

The Plan may be amended by the shareholders of the Company. The Plan may also be amended by the Administrator, including, without limitation, to the extent necessary to qualify any or all outstanding Stock Rights granted under the Plan or Stock Rights to be granted under the Plan for favorable federal income tax treatment (including deferral of taxation upon exercise) as may be afforded incentive stock options under Section 422 of the Code, and to the extent necessary to qualify the shares issuable upon exercise or acceptance of any outstanding Stock Rights granted, or Stock Rights to be granted, under the Plan for listing on any national securities exchange or quotation in any national automated quotation system of securities dealers. Any amendment approved by the Administrator which the Administrator determines is of a scope that requires shareholder approval shall be subject to obtaining such shareholder approval. Any modification or amendment of the Plan shall not, without the consent of a Participant, adversely affect his or her rights under a Stock Right previously granted to him or her. With the consent of the Participant affected, the Administrator may amend outstanding Option Agreements and Stock Grant Agreements in a manner which may be adverse to the Participant but which is not inconsistent with the Plan. In the discretion of the Administrator, outstanding Option Agreements and Stock Grant Agreements may be amended by the Administrator in a manner which is not adverse to the Participant.

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31. EMPLOYMENT OR OTHER RELATIONSHIP.

Nothing in this Plan or any Option Agreement or Stock Grant Agreement shall be deemed to prevent the Company or an Affiliate from terminating the employment, consultancy or director status of a Participant, nor to prevent a Participant from terminating his or her own employment, consultancy or director status or to give any Participant a right to be retained in employment or other service by the Company or any Affiliate for any period of time.

32. GOVERNING LAW.

This Plan shall be construed and enforced in accordance with the law of the State of Delaware.

As amended through August 1, 2003

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INCENTIVE STOCK OPTION AGREEMENT

ALNYLAM PHARMACEUTICALS, INC.

AGREEMENT made as of the _____ day of _________ 200_, between Alnylam Pharmaceuticals, Inc. (the "Company"), a Delaware corporation having a principal place of business in Cambridge, Massachusetts, and ___________ of ____________, an employee of the Company (the "Employee").

WHEREAS, the Company desires to grant to the Employee an Option to purchase shares of its common stock, $.0001 par value per share (the "Shares"), under and for the purposes set forth in the Company's 2002 Employee, Director and Consultant Stock Plan (the "Plan");

WHEREAS, the Company and the Employee understand and agree that any terms used and not defined herein have the same meanings as in the Plan; and

WHEREAS, the Company and the Employee each intend that the Option granted herein qualify as an ISO.

NOW, THEREFORE, in consideration of the mutual covenants hereinafter set forth and for other good and valuable consideration, the parties hereto agree as follows:

1. GRANT OF OPTION.

The Company hereby grants to the Employee the right and option to purchase all or any part of an aggregate of ____________ Shares, on the terms and conditions and subject to all the limitations set forth herein, under United States securities and tax laws, and in the Plan, which is incorporated herein by reference. The Employee acknowledges receipt of a copy of the Plan.

2. PURCHASE PRICE.

The purchase price of the Shares covered by the Option shall be $_________ per Share, subject to adjustment, as provided in the Plan, in the event of a stock split, reverse stock split or other events affecting the holders of Shares after the date hereof (the "Purchase Price"). Payment shall be made in accordance with Paragraph 8 of the Plan.

3. EXERCISABILITY OF OPTION.

Subject to the terms and conditions set forth in this Agreement and the Plan, the Option granted hereby shall become exercisable for up to _________ of the Shares on the last day of the month after the first anniversary of the date of this Agreement and for an additional ________ of the Shares on the last day of each ______, ______, _______ and _______ of each year after the first anniversary of this Agreement until 100% of the Shares have become vested.

Alternatively, at the election of the Employee, the Option may be exercised in whole or in part at any time as to Shares which have not yet vested in accordance with the above schedule;


provided however, as a condition to exercising the Option for such unvested Shares, the Employee shall execute a Restricted Stock Agreement in the form attached hereto as Exhibit C.

The foregoing rights are cumulative and are subject to the other terms and conditions of this Agreement and the Plan.

4. TERM OF OPTION.

The Option shall terminate ten years from the date of this Agreement or, if the Employee owns as of the date hereof more than 10% of the total combined voting power of all classes of capital stock of the Company or an Affiliate, five years from the date of this Agreement, but shall be subject to earlier termination as provided herein or in the Plan.

If the Employee ceases to be an employee of the Company or of an Affiliate (for any reason other than the death or Disability of the Employee or termination of the Employee's employment for "cause" (as defined in the Plan), the Option may be exercised, if it has not previously terminated, within three months after the date the Employee ceases to be an employee of the Company or an Affiliate, or within the originally prescribed term of the Option, whichever is earlier, but may not be exercised thereafter. In such event, the Option shall be exercisable only to the extent that the Option has become exercisable and is in effect at the date of such cessation of employment.

Notwithstanding the foregoing, in the event of the Employee's Disability or death within three months after the termination of employment, the Employee or the Employee's Survivors may exercise the Option within one year after the date of the Employee's termination of employment, but in no event after the date of expiration of the term of the Option.

In the event the Employee's employment is terminated by the Employee's employer for "cause" (as defined in the Plan), the Employee's right to exercise any unexercised portion of this Option shall cease immediately as of the time the Employee is notified his or her employment is terminated for "cause," and this Option shall thereupon terminate. Notwithstanding anything herein to the contrary, if subsequent to the Employee's termination as an employee, but prior to the exercise of the Option, the Board of Directors of the Company determines that, either prior or subsequent to the Employee's termination, the Employee engaged in conduct which would constitute "cause," then the Employee shall immediately cease to have any right to exercise the Option and this Option shall thereupon terminate.

In the event of the Disability of the Employee, as determined in accordance with the Plan, the Option shall be exercisable within one year after the Employee's termination of employment or, if earlier, within the term originally prescribed by the Option. In such event, the Option shall be exercisable:

(a) to the extent that the Option has become exercisable but has not been exercised as of the date of Disability; and

(b) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of Disability of any additional vesting rights that

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would have accrued on the next vesting date had the Employee not become Disabled. The proration shall be based upon the number of days accrued in the current vesting period prior to the date of Disability.

In the event of the death of the Employee while an employee of the Company or of an Affiliate, the Option shall be exercisable by the Employee's Survivors within one year after the date of death of the Employee or, if earlier, within the originally prescribed term of the Option. In such event, the Option shall be exercisable:

(x) to the extent that the Option has become exercisable but has not been exercised as of the date of death; and

(y) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of death of any additional vesting rights that would have accrued on the next vesting date had the Employee not died. The proration shall be based upon the number of days accrued in the current vesting period prior to the Employee's date of death.

5. METHOD OF EXERCISING OPTION.

Subject to the terms and conditions of this Agreement, the Option may be exercised by written notice to the Company or its designee, in substantially the form of Exhibit A attached hereto. Such notice shall state the number of Shares with respect to which the Option is being exercised and shall be signed by the person exercising the Option. Payment of the purchase price for such Shares shall be made in accordance with Paragraph 8 of the Plan. The Company shall deliver a certificate or certificates representing such Shares as soon as practicable after the notice shall be received, provided, however, that the Company may delay issuance of such Shares until completion of any action or obtaining of any consent, which the Company deems necessary under any applicable law (including, without limitation, state securities or "blue sky" laws). The certificate or certificates for the Shares as to which the Option shall have been so exercised shall be registered in the Company's share register in the name of the person so exercising the Option (or, if the Option shall be exercised by the Employee and if the Employee shall so request in the notice exercising the Option, shall be registered in the name of the Employee and another person jointly, with right of survivorship) and shall be delivered as provided above to or upon the written order of the person exercising the Option. In the event the Option shall be exercised, pursuant to Section 4 hereof, by any person other than the Employee, such notice shall be accompanied by appropriate proof of the right of such person to exercise the Option. All Shares that shall be purchased upon the exercise of the Option as provided herein shall be fully paid and nonassessable.

6. PARTIAL EXERCISE.

Exercise of this Option to the extent above stated may be made in part at any time and from time to time within the above limits, except that no fractional share shall be issued pursuant to this Option.

7. NON-ASSIGNABILITY.

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The Option shall not be transferable by the Employee otherwise than by will or by the laws of descent and distribution. The Option shall be exercisable, during the Employee's lifetime, only by the Employee (or, in the event of legal incapacity or incompetency, by the Employee's guardian or representative) and shall not be assigned, pledged or hypothecated in any way (whether by operation of law or otherwise) and shall not be subject to execution, attachment or similar process. Any attempted transfer, assignment, pledge, hypothecation or other disposition of the Option or of any rights granted hereunder contrary to the provisions of this Section 7, or the levy of any attachment or similar process upon the Option shall be null and void.

8. NO RIGHTS AS STOCKHOLDER UNTIL EXERCISE.

The Employee shall have no rights as a stockholder with respect to Shares subject to this Agreement until registration of the Shares in the Company's share register in the name of the Employee. Except as is expressly provided in the Plan with respect to certain changes in the capitalization of the Company, no adjustment shall be made for dividends or similar rights for which the record date is prior to the date of such registration.

9. ADJUSTMENTS.

The Plan contains provisions covering the treatment of Options in a number of contingencies such as stock splits and mergers. Provisions in the Plan for adjustment with respect to stock subject to Options and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference, provided, however, in the event of a Change of Control (as defined in the Plan) which the Administrator (as defined in the Plan) or the Successor Board (as defined in the Plan) makes provisions for the treatment of Options under (A) clause (i) of the first paragraph of Section 23(B) of the Plan, an additional one-sixteenth (1/16) of the Shares shall become fully vested and immediately exercisable immediately prior to such Change of Control and the remaining Shares which have not vested shall vest in accordance with Section 3 above, provided, however, if the Employee's employment with the Company is Terminated (as defined below), fifty percent (50%) of the Shares which have not yet vested in accordance with Section 3 above shall become fully vested and immediately exercisable immediately prior to such termination (for purposes of this Section 9, the Employee shall be deemed to have been "Terminated" if at any time before the six-month anniversary of the closing of such Change of Control, (i) the Employee shall fail to be vested with power and authority analogous to the Employee's title and/or office prior to such Change of Control, (ii) the Employee shall lose any significant duties or responsibilities attending such office, (iii) there shall occur a reduction in the Employee's base compensation, or (iv) the Employee's employment with the Company or an Affiliate, or its successor, is terminated without "cause" (as defined in the Plan)) or (B) either clause (ii) or (iii) of the first paragraph of Section 23(B) of the Plan, all Shares under this Option shall become fully vested and immediately exercisable prior to such Change of Control.

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10. TAXES.

The Employee acknowledges that any income or other taxes due from him or her with respect to this Option or the Shares issuable pursuant to this Option shall be the Employee's responsibility.

In the event of a Disqualifying Disposition (as defined in Section 15 below) or if the Option is converted into a Non-Qualified Option and such Non-Qualified Option is exercised, the Company may withhold from the Employee's remuneration, if any, the minimum statutory amount of federal, state and local withholding taxes attributable to such amount that is considered compensation includable in such person's gross income. At the Company's discretion, the amount required to be withheld may be withheld in cash from such remuneration, or in kind from the Shares otherwise deliverable to the Employee on exercise of the Option. The Employee further agrees that, if the Company does not withhold an amount from the Employee's remuneration sufficient to satisfy the Company's income tax withholding obligation, the Employee will reimburse the Company on demand, in cash, for the amount under-withheld.

11. PURCHASE FOR INVESTMENT.

Unless the offering and sale of the Shares to be issued upon the particular exercise of the Option shall have been effectively registered under the Securities Act of 1933, as now in force or hereafter amended (the "1933 Act"), the Company shall be under no obligation to issue the Shares covered by such exercise unless and until the following conditions have been fulfilled:

(a) The person(s) who exercise the Option shall warrant to the Company, at the time of such exercise, that such person(s) are acquiring such Shares for their own respective accounts, for investment, and not with a view to, or for sale in connection with, the distribution of any such Shares, in which event the person(s) acquiring such Shares shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing the Shares issued pursuant to such exercise:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is then available, and (2) there shall have been compliance with all applicable state securities laws;" and

(b) If the Company so requires, the Company shall have received an opinion of its counsel that the Shares may be issued upon such particular exercise in compliance with the 1933 Act without registration thereunder. Without limiting the generality of the foregoing, the Company may delay issuance of the Shares until completion of any action or obtaining of any consent, which the Company deems necessary

5

under any applicable law (including without limitation state securities or "blue sky" laws).

12. RESTRICTIONS ON TRANSFER OF SHARES.

12.1 The Shares acquired by the Employee pursuant to the exercise of the Option granted hereby shall not be transferred by the Employee except as permitted herein.

12.2 In the event of the Employee's termination of employment for any reason, the Company shall have the option, but not the obligation, to repurchase all or any part of the Shares issued pursuant to this Agreement (including, without limitation, Shares purchased after termination of employment, Disability or death in accordance with Section 4 hereof). In the event the Company does not, upon the termination of employment of the Employee (as described above), exercise its option pursuant to this Section 12.2, the restrictions set forth in the balance of this Agreement shall not thereby lapse, and the Employee for himself or herself, his or her heirs, legatees, executors, administrators and other successors in interest, agrees that the Shares shall remain subject to such restrictions. The following provisions shall apply to a repurchase under this Section 12.2:

(i) The per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Fair Market Value of each such Share determined in accordance with the Plan as of the date of termination of employment provided, however, in the event of a termination by the Company for "cause" (as defined in the Plan), the per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Purchase Price.

(ii) The Company's option to repurchase the Employee's Shares in the event of termination of employment shall be valid for a period of 12 months commencing with the date of such termination of employment.

(iii) In the event the Company shall be entitled to and shall elect to exercise its option to repurchase the Employee's Shares under this
Section 12.2, the Company shall notify the Employee, or in case of death, his or her Survivor, in writing of its intent to repurchase the Shares. Such written notice may be mailed by the Company up to and including the last day of the time period provided for in
Section 12.2(ii) for exercise of the Company's option to repurchase.

(iv) The written notice to the Employee shall specify the address at, and the time and date on, which payment of the repurchase price is to be made (the "Closing"). The date specified shall not be less than ten days nor more than 60 days from the date of the mailing of the notice, and the Employee or his or her successor in interest with respect to the Shares shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Employee or his or her successor in interest and the Shares being purchased, duly endorsed for transfer, shall, to the extent that they

6

are not then in the possession of the Company, be delivered to the Company by the Employee or his or her successor in interest.

12.3 It shall be a condition precedent to the validity of any sale or other transfer of any Shares by the Employee that the following restrictions be complied with (except as hereinafter otherwise provided):

(i) No Shares owned by the Employee may be sold, pledged or otherwise transferred (including by gift or devise) to any person or entity, voluntarily, or by operation of law, except in accordance with the terms and conditions hereinafter set forth.

(ii) Before selling or otherwise transferring all or part of the Shares, the Employee shall give written notice of such intention to the Company, which notice shall include the name of the proposed transferee, the proposed purchase price per share, the terms of payment of such purchase price and all other matters relating to such sale or transfer and shall be accompanied by a copy of the binding written agreement of the proposed transferee to purchase the Shares of the Employee. Such notice shall constitute a binding offer by the Employee to sell to the Company such number of the Shares then held by the Employee as are proposed to be sold in the notice at the monetary price per share designated in such notice, payable on the terms offered to the Employee by the proposed transferee (provided, however, that the Company shall not be required to meet any non-monetary terms of the proposed transfer, including, without limitation, delivery of other securities in exchange for the Shares proposed to be sold). The Company shall give written notice to the Employee as to whether such offer has been accepted in whole by the Company within 60 days after its receipt of written notice from the Employee. The Company may only accept such offer in whole and may not accept such offer in part. Such acceptance notice shall fix a time, location and date for the closing on such purchase ("Closing Date") which shall not be less than ten nor more than 60 days after the giving of the acceptance notice. The place for such closing shall be at the Company's principal office. At such closing, the Employee shall accept payment as set forth herein and shall deliver to the Company in exchange therefor certificates for the number of Shares stated in the notice accompanied by duly executed instruments of transfer.

(iii) If the Company shall fail to accept any such offer, the Employee shall be free to sell all, but not less than all, of the Shares set forth in his or her notice to the designated transferee at the price and terms designated in the Employee's notice, provided that (i) such sale is consummated within six months after the giving of notice by the Employee to the Company as aforesaid, and (ii) the transferee first agrees in writing to be bound by the provisions of this Section 12 so that such transferee (and all subsequent transferees) shall thereafter only be permitted to sell or transfer the Shares in accordance with the terms hereof. After the expiration of such six months, the provisions of this Section 12.3 shall again apply with respect to any proposed voluntary transfer of the Employee's Shares.

7

(iv) The restrictions on transfer contained in this Section 12.3 shall not apply to (a) transfers by the Employee to his or her spouse or children or to a trust for the benefit of his or her spouse or children, (b) transfers by the Employee to his or her guardian or conservator, and (c) or transfers by the Employee, in the event of his or her death, to his or her executor(s) or administrator(s) or to trustee(s) under his or her will (collectively, "Permitted Transferees"); provided however, that in any such event the Shares so transferred in the hands of each such Permitted Transferee shall remain subject to this Agreement, and each such Permitted Transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer.

(v) The provisions of this Section 12.3 may be waived by the Company. Any such waiver may be unconditional or based upon such conditions as the Company may impose.

12.4 In the event that the Employee or his or her successor in interest fails to deliver the Shares to be repurchased by the Company under this Agreement, the Company may elect (a) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Employee or his or her successor in interest upon delivery of such Shares, and (b) immediately to take such action as is appropriate to transfer record title of such Shares from the Employee to the Company and to treat the Employee and such Shares in all respects as if delivery of such Shares had been made as required by this Agreement. The Employee hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

12.5 If the Company shall pay a stock dividend or declare a stock split on or with respect to any of its Common Stock, or otherwise distribute securities of the Company to the holders of its Common Stock, the number of shares of stock or other securities of Company issued with respect to the shares then subject to the restrictions contained in this Agreement shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement. If the Company shall distribute to its stockholders shares of stock of another corporation, the shares of stock of such other corporation, distributed with respect to the Shares then subject to the restrictions contained in this Agreement, shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement.

12.6 If the outstanding shares of Common Stock of the Company shall be subdivided into a greater number of shares or combined into a smaller number of shares, or in the event of a reclassification of the outstanding shares of Common Stock of the Company, or if the Company shall be a party to a merger, consolidation or capital reorganization, there shall be substituted for the Shares then subject to the restrictions contained in this Agreement such amount and kind of securities as are issued in such subdivision, combination, reclassification, merger, consolidation or capital reorganization in respect of the Shares subject immediately prior thereto to the Company's rights to repurchase pursuant to this Agreement.

12.7 The Company shall not be required to transfer any Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Agreement, or to treat as

8

owner of such Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Shares shall have been so sold, assigned or otherwise transferred, in violation of this Agreement.

12.8 The provisions of Sections 12.1, 12.2 and 12.3 shall terminate upon the consummation of a public offering of any of the Company's securities pursuant to a registration statement filed with the Securities and Exchange Commission pursuant to the 1933 Act.

12.9 If, in connection with a registration statement filed by the Company pursuant to the 1933 Act, the Company or its underwriter so requests, the Employee will agree not to sell any Shares for a period not to exceed 180 days following the effectiveness of such registration.

12.10 The Employee acknowledges and agrees that neither the Company, its shareholders nor its directors and officers, has any duty or obligation to disclose to the Employee any material information regarding the business of the Company or affecting the value of the Shares before, at the time of, or following a termination of the employment of the Employee by the Company, including, without limitation, any information concerning plans for the Company to make a public offering of its securities or to be acquired by or merged with or into another firm or entity.

12.11 All certificates representing the Shares to be issued to the Employee pursuant to this Agreement shall have endorsed thereon a legend substantially as follows: "The shares represented by this certificate are subject to restrictions set forth in an Incentive Stock Option Agreement dated _________, 200_ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

13. NO OBLIGATION TO EMPLOY.

The Company is not by the Plan or this Option obligated to continue the Employee as an employee of the Company or an Affiliate. The Employee acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Option is a one-time benefit which does not create any contractual or other right to receive future grants of options, or benefits in lieu of options; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when options shall be granted, the number of shares subject to each option, the option price, and the time or times when each option shall be exercisable, will be at the sole discretion of the Company; (iv) that the Employee's participation in the Plan is voluntary; (v) that the value of the Option is an extraordinary item of compensation which is outside the scope of the Employee's employment contract, if any; and (vi) that the Option is not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

14. OPTION IS INTENDED TO BE AN ISO.

The parties each intend that the Option be an ISO so that the Employee (or the Employee's Survivors) may qualify for the favorable tax treatment provided to holders of Options that meet the standards of Section 422 of the Code. Any provision of this Agreement or

9

the Plan which conflicts with the Code so that this Option would not be deemed an ISO is null and void and any ambiguities shall be resolved so that the Option qualifies as an ISO. Nonetheless, if the Option is determined not to be an ISO, the Employee understands that neither the Company nor any Affiliate is responsible to compensate him or her or otherwise make up for the treatment of the Option as a Non-qualified Option and not as an ISO. The Employee should consult with the Employee's own tax advisors regarding the tax effects of the Option and the requirements necessary to obtain favorable tax treatment under
Section 422 of the Code, including, but not limited to, holding period requirements.

15. NOTICE TO COMPANY OF DISQUALIFYING DISPOSITION.

The Employee agrees to notify the Company in writing immediately after the Employee makes a Disqualifying Disposition of any of the Shares acquired pursuant to the exercise of the Option. A Disqualifying Disposition is defined in Section 424(c) of the Code and includes any disposition (including any sale) of such Shares before the later of (a) two years after the date the Employee was granted the Option or (b) one year after the date the Employee acquired Shares by exercising the Option, except as otherwise provided in Section 424(c) of the Code. If the Employee has died before the Shares are sold, these holding period requirements do not apply and no Disqualifying Disposition can occur thereafter.

16. NOTICES.

Any notices required or permitted by the terms of this Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Pharmaceuticals, Inc.


If to the Employee:




or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given upon the earlier of receipt, one business day following delivery to a recognized courier service or three business days following mailing by registered or certified mail.

17. GOVERNING LAW.

This Agreement shall be construed and enforced in accordance with the law of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, the parties hereby consent to exclusive

10

jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

18. BENEFIT OF AGREEMENT.

Subject to the provisions of the Plan and the other provisions hereof, this Agreement shall be for the benefit of and shall be binding upon the heirs, executors, administrators, successors and assigns of the parties hereto.

19. ENTIRE AGREEMENT.

This Agreement, together with the Plan, embodies the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement shall affect or be used to interpret, change or restrict, the express terms and provisions of this Agreement, provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

20. MODIFICATIONS AND AMENDMENTS.

The terms and provisions of this Agreement may be modified or amended as provided in the Plan.

21. WAIVERS AND CONSENTS.

Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

22. DATA PRIVACY.

By entering into this Agreement, the Employee: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan recordkeeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of options and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

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23. CONSENT OF SPOUSE.

If the Employee is married as of the date of this Agreement, the Employee's spouse shall execute a Consent of Spouse in the form of Exhibit B hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Employee marries or remarries subsequent to the date hereof, the Employee shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of Section 12.2 of this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Exhibit B.

[REMAINDER OF PAGE INTENTIONALLY LEFT BLANK]

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IN WITNESS WHEREOF, the Company has caused this Agreement to be executed by its duly authorized officer, and the Employee has hereunto set his or her hand, all as of the day and year first above written.

ALNYLAM PHARMACEUTICALS, INC.

By:_____________________________________
Name
Title


Employee

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Exhibit A

NOTICE OF EXERCISE OF INCENTIVE STOCK OPTION

[FORM FOR UNREGISTERED SHARES]

To: Alnylam Pharmaceuticals, Inc.

Ladies and Gentlemen:

I hereby exercise my Incentive Stock Option to purchase __________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Pharmaceuticals, Inc. (the "Company"), at the exercise price of $________ per share, pursuant to and subject to the terms of that certain Incentive Stock Option Agreement between the undersigned and the Company dated __________, 200_.

I am aware that the Shares have not been registered under the Securities Act of 1933, as amended (the "1933 Act"), or any state securities laws. I understand that the reliance by the Company on exemptions under the 1933 Act is predicated in part upon the truth and accuracy of the statements by me in this Notice of Exercise.

I hereby represent and warrant that (1) I have been furnished with all information which I deem necessary to evaluate the merits and risks of the purchase of the Shares; (2) I have had the opportunity to ask questions concerning the Shares and the Company and all questions posed have been answered to my satisfaction; (3) I have been given the opportunity to obtain any additional information I deem necessary to verify the accuracy of any information obtained concerning the Shares and the Company; and (4) I have such knowledge and experience in financial and business matters that I am able to evaluate the merits and risks of purchasing the Shares and to make an informed investment decision relating thereto.

I hereby represent and warrant that I am purchasing the Shares for my own personal account for investment and not with a view to the sale or distribution of all or any part of the Shares.

I understand that because the Shares have not been registered under the 1933 Act, I must continue to bear the economic risk of the investment for an indefinite time and the Shares cannot be sold unless the Shares are subsequently registered under applicable federal and state securities laws or an exemption from such registration requirements is available.

I agree that I will in no event sell or distribute or otherwise dispose of all or any part of the Shares unless (1) there is an effective registration statement under the 1933 Act and applicable state securities laws covering any such transaction involving the Shares or (2) the Company receives an opinion of my legal counsel (concurred in by legal counsel for the Company) stating that such transaction is exempt from registration or the Company otherwise satisfies itself that such transaction is exempt from registration.

A-1

I consent to the placing of a legend on my certificate for the Shares stating that the Shares have not been registered and setting forth the restriction on transfer contemplated hereby and to the placing of a stop transfer order on the books of the Company and with any transfer agents against the Shares until the Shares may be legally resold or distributed without restriction.

I understand that at the present time Rule 144 of the Securities and Exchange Commission (the "SEC") may not be relied on for the resale or distribution of the Shares by me. I understand that the Company has no obligation to me to register the sale of the Shares with the SEC and has not represented to me that it will register the sale of the Shares.

I understand the terms and restrictions on the right to dispose of the Shares set forth in the 2002 Employee, Director and Consultant Stock Plan and the Incentive Stock Option Agreement, both of which I have carefully reviewed. I consent to the placing of a legend on my certificate for the Shares referring to such restriction and the placing of stop transfer orders until the Shares may be transferred in accordance with the terms of such restrictions.

I have considered the Federal, state and local income tax implications of the exercise of my Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:

Please issue the stock certificate for the Shares (check one):

[ ] to me; or

[ ] to me and ____________, as joint tenants with right of survivorship

and mail the certificate to me at the following address:




My mailing address for shareholder communications, if different from the address listed above is:




Very truly yours,


Employee (signature)

A-2


Print Name


Date


Social Security Number

A-3

Exhibit A

NOTICE OF EXERCISE OF INCENTIVE STOCK OPTION

[FORM FOR REGISTERED SHARES]

TO: Alnylam Pharmaceuticals, Inc.




IMPORTANT NOTICE: This form of Notice of Exercise may only be used at such time as the Company has filed a Registration Statement with the Securities and Exchange Commission under which the issuance of the Shares for which this exercise is being made is registered and such Registration Statement remains effective.

Ladies and Gentlemen:

I hereby exercise my Incentive Stock Option to purchase __________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Pharmaceuticals, Inc. (the "Company"), at the exercise price of $_________ per share, pursuant to and subject to the terms of that certain Incentive Stock Option Agreement between the undersigned and the Company dated ____________, 200_.

I understand the nature of the investment I am making and the financial risks thereof. I am aware that it is my responsibility to have consulted with competent tax and legal advisors about the relevant national, state and local income tax and securities laws affecting the exercise of the Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:

Please issue the Shares (check one):

[ ] to me; or

[ ] to me and ______________, as joint tenants with right of survivorship,

at the following address:




A-1

My mailing address for shareholder communications, if different from the address listed above, is:





Very truly yours,


Employee (signature)


Print Name


Date


Social Security Number

A-2

Exhibit B

CONSENT OF SPOUSE

I, _______________________, spouse of _____________________________, acknowledge that I have read the Incentive Stock Option Agreement dated as of _______________, 200_ (the "Agreement") to which this Consent is attached as Exhibit B and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Shares granted to my spouse pursuant to the Agreement are subject to a right of repurchase in favor of Alnylam Pharmaceuticals, Inc. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Shares shall be similarly bound by the Agreement.

I agree to the repurchase right described in Section 12.2 of the Agreement and I hereby consent to the repurchase of the Shares by the Company and the sale of the Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Shares by an outright bequest of the Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Shares as it would have had pursuant to the Agreement if I had acquired the Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the _________ day of ____________, 200__.


Print name:

B-1

EXHIBIT C

RESTRICTED STOCK AGREEMENT

ALNYLAM PHARMACEUTICALS, INC.

AGREEMENT made as of the ______ day of __________, 200_ (the "Grant Date"), between Alnylam Pharmaceuticals, Inc. (the "Company"), a Delaware corporation having its principal place of business in Cambridge, Massachusetts, and ____________ of _________________, (the "Participant").

WHEREAS, the Company has adopted the Alnylam Pharmaceuticals, Inc. 2002 Employee, Director and Consultant Stock Plan (the "Plan") to promote the interests of the Company by providing an incentive for employees, directors and consultants of the Company or its Affiliates;

WHEREAS, the parties hereto understand and agree that any terms used and not defined herein have the meanings ascribed to such terms in the Plan and that any and all references herein to employment of the Participant by the Company shall include the Participant's employment or service as an employee, director or consultant of the Company or any Affiliate;

WHEREAS, pursuant to the exercise of an option granted to the Participant pursuant to an Incentive Stock Option Agreement dated _____________ by and between the Company and the Participant issued under the Plan (the "Option Agreement"), which Option Agreement and Plan are hereby incorporated herein by reference, the Participant has elected to purchase ____________ shares of the Company's common stock, $.0001 par value per share ("Common Stock"), which have not become vested under the vesting schedule set forth in the Option Agreement (the "Unvested Shares"). The Unvested Shares and the Shares subject to the Option Agreement that have become vested are sometimes collectively referred to herein as the "Shares."

WHEREAS, as required by the Option Agreement, as a condition to the Participant's election to exercise the option, the Participant must execute this Agreement, which sets forth the rights and obligations of the parties with respect to the Unvested Shares acquired upon exercise of the option pursuant to the Option Agreement; and

WHEREAS, Participant wishes to accept said offer in accordance with the provisions of the Plan, all on the terms and conditions hereinafter set forth.

NOW, THEREFORE, in consideration of the premises and the mutual covenants contained herein and for other good and valuable consideration, the receipt and sufficiency of which are hereby acknowledged, the parties hereto hereby agree as follows:

C-1

1. Company's Lapsing Repurchase Right.

(a) Lapsing Repurchase Right. Except as set forth in Subsection 1(b) hereof, in the event that for any reason the Participant no longer is an employee, director or consultant of the Company or an Affiliate, the Company (or its designee) shall have the option, but not the obligation, to purchase from the Participant (or the Participant's Survivor), and, in the event the Company exercises such option, the Participant (or the Participant's Survivor) shall be obligated to sell to the Company (or its designee), at a price per Share equal to the Purchase Price, all or any part of the Unvested Shares determined as of the date of such termination of service (the "Lapsing Repurchase Right"). The Lapsing Repurchase Right with respect to the Unvested Shares shall terminate as to such Unvested Shares in accordance with the vesting schedule set forth in
Section 3 of the Option Agreement. The Company's Lapsing Repurchase Right shall be valid for a period of one year commencing with the date of such termination of employment or service. Notwithstanding any other provision hereof, in the event the Company is prohibited during such one year period from exercising its Lapsing Repurchase Right by Section 160 of the Delaware General Corporation Law as amended from time to time (or any successor provision), then the time period during which such Lapsing Repurchase Right may be exercised shall be extended until 30 days after the Company is first not so prohibited.

(b) Effect of Termination for Disability or upon Death. The following rules apply if the Participant ceases to be an employee, director or consultant of the Company by reason of Disability or death: to the extent the Company's Lapsing Repurchase Right has not lapsed as of the date of Disability or death, as case may be, the Company may exercise such Lapsing Repurchase Right; provided, however, that the Company's Lapsing Repurchase Right shall be deemed to have lapsed to the extent of a pro rata portion of the Unvested Shares through the date of Disability or death, as would have lapsed had the Participant not become Disabled or died, as the case may be. The proration shall be based upon the number of days accrued in such current vesting period prior to the Participant's date of Disability or death, as the case may be.

(c) Closing. In the event that the Company exercises the Lapsing Repurchase Right, the Company shall notify the Participant, or, in the case of the Participant's death, his or her Survivor, in writing of its intent to repurchase the Unvested Shares. Such notice may be mailed by the Company up to and including the last day of the time period provided for above for exercise of the Lapsing Repurchase Right. The notice shall specify the place, time and date for payment of the repurchase price (the "Closing") and the number of Unvested Shares with respect to which the Company is exercising the Lapsing Repurchase Right. The Closing shall be not less than ten days nor more than 60 days from the date of mailing of the notice, and the Participant or the Participant's Survivor with respect to the Unvested Shares which the Company elects to repurchase shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or the Participant's Survivor and the Unvested Shares being repurchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(d) Escrow. The certificates representing all Unvested Shares acquired by the Participant hereunder which from time to time are subject to the Lapsing Repurchase Right shall

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be delivered to the Company and the Company shall hold such Unvested Shares in escrow as provided in this Subsection 1(d). Promptly following receipt by the Company of a written request from the Participant, the Company shall release from escrow and deliver to the Participant a certificate for the whole number of Unvested Shares, if any, as to which the Company's Lapsing Repurchase Right has lapsed. In the event of a repurchase by the Company of Unvested Shares subject to the Lapsing Repurchase Right, the Company shall release from escrow and cancel a certificate for the number of Unvested Shares so repurchased. Any securities distributed in respect of the Unvested Shares held in escrow, including, without limitation, shares issued as a result of stock splits, stock dividends or other recapitalizations, shall also be held in escrow in the same manner as the Unvested Shares.

(e) Prohibition on Transfer. The Participant recognizes and agrees that all Unvested Shares which are subject to the Lapsing Repurchase Right may not be sold, transferred, assigned, hypothecated, pledged, encumbered or otherwise disposed of, whether voluntarily or by operation of law, other than to the Company (or its designee). The Company shall not be required to transfer any Unvested Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Subsection 1(e), or to treat as the owner of such Unvested Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Unvested Shares shall have been so sold, assigned or otherwise transferred, in violation of this Subsection 1(e). The Participant further recognizes and agrees that all Shares remain subject to Section 12 of the Option Agreement, except that with respect to the Unvested Shares subject to the Lapsing Repurchase Right, this Agreement will supercede Section 12.3 of the Option Agreement.

(f) Failure to Deliver Unvested Shares to be Repurchased. In the event that the Unvested Shares to be repurchased by the Company under this Agreement are not in the Company's possession pursuant to Subsection 1(d) above or otherwise and the Participant or the Participant's Survivor fails to deliver such Unvested Shares to the Company (or its designee), the Company may elect (i) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Participant or the Participant's Survivor upon delivery of such Unvested Shares, and (ii) immediately to take such action as is appropriate to transfer record title of such Unvested Shares from the Participant to the Company (or its designee) and to treat the Participant and such Unvested Shares in all respects as if delivery of such Unvested Shares had been made as required by this Agreement. The Participant hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

(g) Adjustments. The Plan and the Option Agreement contain provisions covering the treatment of Shares in a number of contingencies such as stock splits and mergers. Provisions in the Plan and the Option Agreement for adjustment with respect to the Shares and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference.

2. Legend. In addition to any legend required pursuant to the Plan or the Option Agreement, all certificates representing the Unvested Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows:

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"The shares represented by this certificate are subject to restrictions set forth in a Restricted Stock Agreement dated as of __________, 200_ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

3. Purchase for Investment. If the offering and sale of the Unvested Shares have not been effectively registered under the Securities Act of 1933, as amended, the Participant hereby represents and warrants that he or she is acquiring the Unvested Shares for his or her own account, for investment, and not with a view to, or for sale in connection with, the distribution of any such Unvested Shares.

4. Provisions of Agreement Controlling. The Participant specifically understands and agrees that the Unvested Shares issued under the Plan are being sold to the Participant pursuant to the Plan and the Option Agreement, a copy of which Plan and Option Agreement the Participant acknowledges he or she has read and understands and by which Plan and Option Agreement he or she agrees to be bound. The provisions of the Plan and the Option Agreement are incorporated herein by reference. In the event of a conflict between the terms and conditions of the Plan, this Agreement and the Option Agreement, the provisions of this Agreement will control.

5. Tax Liability of the Participant and Payment of Taxes. The Participant acknowledges and agrees that any income or other taxes due from the Participant with respect to the Unvested Shares issued pursuant to this Agreement, including, without limitation, the Lapsing Repurchase Right, shall be the Participant's responsibility. Without limiting the foregoing, the Participant agrees that, to the extent that the lapsing of restrictions on disposition of any of the Unvested Shares or the declaration of dividends on any such shares before the lapse of such restrictions on disposition results in the Participant's being deemed to be in receipt of earned income under the provisions of the Code, the Company shall be entitled to immediate payment from the Participant of the amount of any tax required to be withheld by the Company.

Upon execution of this Agreement, the Participant may file an election under Section 83 of the Code in substantially the form attached as Attachment I. The Participant acknowledges that if she does not file such an election, as the Unvested Shares are released from the Lapsing Repurchase Right in accordance with Section 1, the Participant may have income for tax purposes equal to the fair market value of the Unvested Shares at such date, less the price paid for the Unvested Shares by the Participant.

6. Securities Law Compliance. The Participant specifically acknowledges and agrees that any sales of Unvested Shares shall be made in accordance with the requirements of the Securities Act of 1933, as amended, in a transaction as to which the Company shall have received an opinion of counsel satisfactory to it confirming such compliance.

7. Equitable Relief. The Participant specifically acknowledges and agrees that in the event of a breach or threatened breach of the provisions of this Agreement, the Option Agreement or the Plan, including the attempted transfer of the Unvested Shares by the Participant in violation of this Agreement or the Option Agreement, monetary damages may not be adequate to compensate the Company, and, therefore, in the event of such a breach or

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threatened breach, in addition to any right to damages, the Company shall be entitled to equitable relief in any court having competent jurisdiction. Nothing herein shall be construed as prohibiting the Company from pursuing any other remedies available to it for any such breach or threatened breach.

8. No Obligation to Maintain Relationship. The Company is not by the Plan, the Option Agreement or this Agreement obligated to continue the Participant as an employee, director or consultant of the Company. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Shares is a one-time benefit which does not create any contractual or other right to receive future grants of shares, or benefits in lieu of shares; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when shares shall be granted, the number of shares to be granted, the Purchase Price, and the time or times when each share shall be free from the Lapsing Repurchase Right, will be at the sole discretion of the Company; (iv) that the Participant's participation in the Plan is voluntary; (v) that the value of the Shares is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Shares are not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

9. Notices. Any notices required or permitted by the terms of this Agreement, the Option Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Pharmaceuticals, Inc.


If to the Participant:




or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given on the earliest of receipt, one business day following delivery by the sender to a recognized courier service, or three business days following mailing by registered or certified mail.

10. Binding Effect. This Agreement shall be for the benefit of and shall be binding upon the parties hereto, upon their respective successors and assigns and upon the Participant's heirs, executors, administrators.

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11. Governing Law. This Agreement shall be construed and enforced in accordance with the laws of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, whether at law or in equity, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

12. Severability. If any provision of this Agreement is held to be invalid or unenforceable by a court of competent jurisdiction, then such provision or provisions shall be modified to the extent necessary to make such provision valid and enforceable, and to the extent that this is impossible, then such provision shall be deemed to be excised from this Agreement, and the validity, legality and enforceability of the rest of this Agreement shall not be affected thereby.

13. Entire Agreement. This Agreement, together with the Plan and the Option Agreement, constitutes the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement, the Option Agreement or the Plan shall affect or be used to interpret, change or restrict the express terms and provisions of this Agreement provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

14. Modifications and Amendments; Waivers and Consents. The terms and provisions of this Agreement may be modified or amended as provided in the Plan. Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

15. Consent of Spouse. If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Attachment II hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Unvested Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of all restrictions contained in this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Attachment II.

16. Counterparts. This Agreement may be executed in one or more counterparts, and by different parties hereto on separate counterparts, each of which shall be deemed an original, but all of which together shall constitute one and the same instrument.

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17. Data Privacy. By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of Shares and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

[THE NEXT PAGE IS THE SIGNATURE PAGE]

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IN WITNESS WHEREOF, the parties hereto have executed this Agreement as of the day and year first above written.

ALNYLAM PHARMACEUTICALS, INC.

By:____________________________________
Name:
Title:

PARTICIPANT:


Print name:

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ATTACHMENT I

ELECTION TO INCLUDE GROSS INCOME IN YEAR
OF TRANSFER PURSUANT TO SECTION 83(B)
OF THE INTERNAL REVENUE CODE OF 1986, AS AMENDED

In accordance with Section 83(b) of the Internal Revenue Code of 1986, as amended (the "Code"), the undersigned hereby elects to include in his gross income as compensation for services the excess, if any, of the fair market value of the property (described below) at the time of transfer over the amount paid for such property.

The following sets for the information required in accordance with the Code and the regulations promulgated hereunder:

1. The name, address and social security number of the undersigned are:

Name:
Address:
Social Security No.:

2. The description of the property with respect to which the election is being made is as follows:

______________ (___) shares (the "Shares") of Common Stock, $.0001 par value per share, of Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company").

3. This election is made for the calendar year ________, with respect to the transfer of the property to the Taxpayer on _________.

4. Description of restrictions: The property is subject to the following restrictions:

In the event taxpayer's employment with the Company or an Affiliate is terminated, the Company may repurchase all or any portion of the Shares determined as set forth below at the acquisition price paid by the taxpayer:

A. If the termination takes place on or prior to _____________, the Purchase Option will apply to all of the Shares.

B. If the termination takes place after _________, 200_, the number of Shares to which the Purchase Option applies shall be ___________
(___) Shares less (i) ____________ (___) and (ii) ___________ (___) Shares for each period ending each ______, ______, ______ and ______ elapsed after _________, 200_ if the taxpayer is employed by the Company or an Affiliate.

5. The fair market value at time of transfer (determined without regard to any restrictions other than restrictions which by their terms will never lapse) of the property with respect to which this election is being made was not more than $_______ per Share.

I-1

6. The amount paid by taxpayer for said property was $______ per Share.

7. A copy of this statement has been furnished to the Company.

Signed this _______ day of _______, 200_.


Print Name:

I-2

ATTACHMENT II

CONSENT OF SPOUSE

I, __________________________, spouse of ________________________________, acknowledge that I have read the RESTRICTED STOCK AGREEMENT dated as of _________, 200 (the "Agreement") to which this Consent is attached as Attachment II and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Unvested Shares granted to my spouse pursuant to the Agreement are subject to a Lapsing Repurchase Right in favor of Alnylam Pharmaceuticals, Inc. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Unvested Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Unvested Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Unvested Shares shall be similarly bound by the Agreement.

I agree to the Lapsing Repurchase Right described in the Agreement and I hereby consent to the repurchase of the Unvested Shares by the Company and the sale of the Unvested Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Unvested Shares by an outright bequest of the Unvested Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Unvested Shares as it would have had pursuant to the Agreement if I had acquired the Unvested Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the ________ day of ___________, 200__.


Print Name:

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NON-QUALIFIED STOCK OPTION AGREEMENT

ALNYLAM PHARMACEUTICALS, INC.

AGREEMENT made as of the ____ day of ____________ 200_, between Alnylam Pharmaceuticals, Inc. (the "Company"), a Delaware corporation having a principal place of business in Cambridge, Massachusetts, and ________________ of __________________ (the "Participant").

WHEREAS, the Company desires to grant to the Participant an Option to purchase shares of its common stock, $.0001 par value per share (the "Shares"), under and for the purposes set forth in the Company's 2002 Employee, Director and Consultant Stock Plan (the "Plan");

WHEREAS, the Company and the Participant understand and agree that any terms used and not defined herein have the same meanings as in the Plan; and

WHEREAS, the Company and the Participant each intend that the Option granted herein shall be a Non-Qualified Option.

NOW, THEREFORE, in consideration of the mutual covenants hereinafter set forth and for other good and valuable consideration, the parties hereto agree as follows:

1. GRANT OF OPTION.

The Company hereby grants to the Participant the right and option to purchase all or any part of an aggregate of ____________ Shares, on the terms and conditions and subject to all the limitations set forth herein, under United States securities and tax laws, and in the Plan, which is incorporated herein by reference. The Participant acknowledges receipt of a copy of the Plan.

2. PURCHASE PRICE.

The purchase price of the Shares covered by the Option shall be $_________ per Share, subject to adjustment, as provided in the Plan, in the event of a stock split, reverse stock split or other events affecting the holders of Shares after the date hereof (the "Purchase Price"). Payment shall be made in accordance with Paragraph 8 of the Plan.

3. EXERCISABILITY OF OPTION.

Subject to the terms and conditions set forth in this Agreement and the Plan, the Option granted hereby shall become exercisable for up to ______ of the Shares on the last day of the month after the first anniversary of the date of this Agreement and for an additional ________ of the Shares on the last day of each _____, _____, _____ and _____ of each year after the first anniversary of this Agreement until 100% of the Shares have become vested.

Alternatively, at the election of the Participant, the Option may be exercised in whole or in part at any time as to Shares which have not yet vested in accordance with the above schedule;


provided however, as a condition to exercising the Option for such unvested Shares, the Participant shall execute a Restricted Stock Agreement in the form attached hereto as Exhibit C.

The foregoing rights are cumulative and are subject to the other terms and conditions of this Agreement and the Plan.

4. TERM OF OPTION.

The Option shall terminate ten years from the date of this Agreement, but shall be subject to earlier termination as provided herein or in the Plan.

If the Participant ceases to be an employee, director or consultant of the Company or of an Affiliate (for any reason other than the death or Disability of the Participant or termination of the Participant for "cause" (as defined in the Plan), the Option may be exercised, if it has not previously terminated, within three months after the date the Participant ceases to be an employee, director or consultant of the Company or an Affiliate, or within the originally prescribed term of the Option, whichever is earlier, but may not be exercised thereafter. In such event, the Option shall be exercisable only to the extent that the Option has become exercisable and is in effect at the date of such cessation of employment, directorship or consultancy.

Notwithstanding the foregoing, in the event of the Participant's Disability or death within three months after the termination of employment, directorship or consultancy, the Participant or the Participant's Survivors may exercise the Option within one year after the date of the Participant's termination of employment, directorship or consultancy, but in no event after the date of expiration of the term of the Option.

In the event the Participant's employment, directorship or consultancy is terminated by the Company or an Affiliate for "cause" (as defined in the Plan), the Participant's right to exercise any unexercised portion of this Option shall cease immediately as of the time the Participant is notified his or her employment, directorship or consultancy is terminated for "cause", and this Option shall thereupon terminate. Notwithstanding anything herein to the contrary, if subsequent to the Participant's termination, but prior to the exercise of the Option, the Board of Directors of the Company determines that, either prior or subsequent to the Participant's termination, the Participant engaged in conduct which would constitute "cause," then the Participant shall immediately cease to have any right to exercise the Option and this Option shall thereupon terminate.

In the event of the Disability of the Participant, as determined in accordance with the Plan, the Option shall be exercisable within one year after the Participant's termination of service or, if earlier, within the term originally prescribed by the Option. In such event, the Option shall be exercisable:

(a) to the extent that the Option has become exercisable but has not been exercised as of the date of Disability; and

(b) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of Disability of any additional vesting rights that

2

would have accrued on the next vesting date had the Participant not become Disabled. The proration shall be based upon the number of days accrued in the current vesting period prior to the date of Disability.

In the event of the death of the Participant while an employee, director or consultant of the Company or of an Affiliate, the Option shall be exercisable by the Participant's Survivors within one year after the date of death of the Participant or, if earlier, within the originally prescribed term of the Option. In such event, the Option shall be exercisable:

(x) to the extent that the Option has become exercisable but has not been exercised as of the date of death; and

(y) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of death of any additional vesting rights that would have accrued on the next vesting date had the Participant not died. The proration shall be based upon the number of days accrued in the current vesting period prior to the Participant's date of death.

5. METHOD OF EXERCISING OPTION.

Subject to the terms and conditions of this Agreement, the Option may be exercised by written notice to the Company or its designee, in substantially the form of Exhibit A attached hereto. Such notice shall state the number of Shares with respect to which the Option is being exercised and shall be signed by the person exercising the Option. Payment of the purchase price for such Shares shall be made in accordance with Paragraph 8 of the Plan. The Company shall deliver a certificate or certificates representing such Shares as soon as practicable after the notice shall be received, provided, however, that the Company may delay issuance of such Shares until completion of any action or obtaining of any consent, which the Company deems necessary under any applicable law (including, without limitation, state securities or "blue sky" laws). The certificate or certificates for the Shares as to which the Option shall have been so exercised shall be registered in the Company's share register in the name of the person so exercising the Option (or, if the Option shall be exercised by the Participant and if the Participant shall so request in the notice exercising the Option, shall be registered in the name of the Participant and another person jointly, with right of survivorship) and shall be delivered as provided above to or upon the written order of the person exercising the Option. In the event the Option shall be exercised, pursuant to Section 4 hereof, by any person other than the Participant, such notice shall be accompanied by appropriate proof of the right of such person to exercise the Option. All Shares that shall be purchased upon the exercise of the Option as provided herein shall be fully paid and nonassessable.

6. PARTIAL EXERCISE.

Exercise of this Option to the extent above stated may be made in part at any time and from time to time within the above limits, except that no fractional share shall be issued pursuant to this Option.

7. NON-ASSIGNABILITY.

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The Option shall not be transferable by the Participant otherwise than by will or by the laws of descent and distribution or pursuant to a qualified domestic relations order as defined by the Code or Title I of the Employee Retirement Income Security Act or the rules thereunder. However, the Participant, with the approval of the Administrator, may transfer the Option for no consideration to or for the benefit of the Participant's Immediate Family (including, without limitation, to a trust for the benefit of the Participant's Immediate Family or to a partnership or limited liability company for one or more members of the Participant's Immediate Family), subject to such limits as the Administrator may establish, and the transferee shall remain subject to all the terms and conditions applicable to the Option prior to such transfer and each such transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer. The term "Immediate Family" shall mean the Participant's spouse, former spouse, parents, children, stepchildren, adoptive relationships, sisters, brothers, nieces, nephews and grandchildren (and, for this purpose, shall also include the Participant.) Except as provided in the previous sentence, the Option shall be exercisable, during the Participant's lifetime, only by the Participant (or, in the event of legal incapacity or incompetency, by the Participant's guardian or representative) and shall not be assigned, pledged or hypothecated in any way (whether by operation of law or otherwise) and shall not be subject to execution, attachment or similar process. Any attempted transfer, assignment, pledge, hypothecation or other disposition of the Option or of any rights granted hereunder contrary to the provisions of this Section 7, or the levy of any attachment or similar process upon the Option shall be null and void.

8. NO RIGHTS AS STOCKHOLDER UNTIL EXERCISE.

The Participant shall have no rights as a stockholder with respect to Shares subject to this Agreement until registration of the Shares in the Company's share register in the name of the Participant. Except as is expressly provided in the Plan with respect to certain changes in the capitalization of the Company, no adjustment shall be made for dividends or similar rights for which the record date is prior to the date of such registration.

9. ADJUSTMENTS.

The Plan contains provisions covering the treatment of Options in a number of contingencies such as stock splits and mergers. Provisions in the Plan for adjustment with respect to stock subject to Options and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference, provided, however, in the event of a Change of Control (as defined in the Plan) which the Administrator (as defined in the Plan) or the Successor Board (as defined in the Plan) makes provisions for the treatment of Options under (A) clause (i) of the first paragraph of Section 23(B) of the Plan, an additional one-sixteenth (1/16) of the Shares shall become fully vested and immediately exercisable immediately prior to such Change of Control and the remaining Shares which have not vested shall vest in accordance with Section 3 above, provided, however, if the Participant's employment with the Company is Terminated (as defined below), fifty percent (50%) of the Shares which have not yet vested in accordance with
Section 3 above shall become fully vested and immediately exercisable immediately prior to such termination (for purposes of this Section 9, the Participant shall be deemed to have been "Terminated" if at any time before the six-month anniversary of the closing of such Change of Control, (i) the

4

Participant shall fail to be vested with power and authority analogous to the Participant's title and/or office prior to such Change of Control, (ii) the Participant shall lose any significant duties or responsibilities attending such office, (iii) there shall occur a reduction in the Participant's base compensation, or (iv) the Participant's employment with the Company or an Affiliate, or its successor, is terminated without "cause" (as defined in the Plan)) or (B) either clause (ii) or (iii) of the first paragraph of Section 23(B) of the Plan, all Shares under this Option shall become fully vested and immediately exercisable prior to such Change of Control.

10. TAXES.

The Participant acknowledges that upon exercise of the Option the Participant will be deemed to have taxable income measured by the difference between the then fair market value of the Shares received upon exercise and the price paid for such Shares pursuant to this Agreement. The Participant acknowledges that any income or other taxes due from him or her with respect to this Option or the Shares issuable pursuant to this Option shall be the Participant's responsibility.

The Participant agrees that the Company may withhold from the Participant's remuneration, if any, the minimum statutory amount of federal, state and local withholding taxes attributable to such amount that is considered compensation includable in such person's gross income. At the Company's discretion, the amount required to be withheld may be withheld in cash from such remuneration, or in kind from the Shares otherwise deliverable to the Participant on exercise of the Option. The Participant further agrees that, if the Company does not withhold an amount from the Participant's remuneration sufficient to satisfy the Company's income tax withholding obligation, the Participant will reimburse the Company on demand, in cash, for the amount under-withheld.

11. PURCHASE FOR INVESTMENT.

Unless the offering and sale of the Shares to be issued upon the particular exercise of the Option shall have been effectively registered under the Securities Act of 1933, as now in force or hereafter amended (the "1933 Act"), the Company shall be under no obligation to issue the Shares covered by such exercise unless and until the following conditions have been fulfilled:

(a) The person(s) who exercise the Option shall warrant to the Company, at the time of such exercise, that such person(s) are acquiring such Shares for their own respective accounts, for investment, and not with a view to, or for sale in connection with, the distribution of any such Shares, in which event the person(s) acquiring such Shares shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing the Shares issued pursuant to such exercise:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is

5

then available, and (2) there shall have been compliance with all applicable state securities laws;" and

(b) If the Company so requires, the Company shall have received an opinion of its counsel that the Shares may be issued upon such particular exercise in compliance with the 1933 Act without registration thereunder. Without limiting the generality of the foregoing, the Company may delay issuance of the Shares until completion of any action or obtaining of any consent, which the Company deems necessary under any applicable law (including without limitation state securities or "blue sky" laws).

12. RESTRICTIONS ON TRANSFER OF SHARES.

12.1 The Shares acquired by the Participant pursuant to the exercise of the Option granted hereby shall not be transferred by the Participant except as permitted herein.

12.2 In the event of the Participant's termination of service for any reason, the Company shall have the option, but not the obligation, to repurchase all or any part of the Shares issued pursuant to this Agreement (including, without limitation, Shares purchased after termination of employment, Disability or death in accordance with Section 4 hereof). In the event the Company does not, upon the termination of service of the Participant (as described above), exercise its option pursuant to this Section 12.2, the restrictions set forth in the balance of this Agreement shall not thereby lapse, and the Participant for himself or herself, his or her heirs, legatees, executors, administrators and other successors in interest, agrees that the Shares shall remain subject to such restrictions. The following provisions shall apply to a repurchase under this Section 12.2:

(i) The per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Fair Market Value of each such Share determined in accordance with the Plan as of the date of termination of service. provided, however, in the event of a termination by the Company for "cause" (as defined in the Plan), the per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Purchase Price.

(ii) The Company's option to repurchase the Participant's Shares in the event of termination of service shall be valid for a period of 12 months commencing with the date of such termination of service

(iii) In the event the Company shall be entitled to and shall elect to exercise its option to repurchase the Participant's Shares under this Section 12.2, the Company shall notify the Participant, or in case of death, his or her Survivor, in writing of its intent to repurchase the Shares. Such written notice may be mailed by the Company up to and including the last day of the time period provided for in Section 12.2(ii) for exercise of the Company's option to repurchase.

6

(iv) The written notice to the Participant shall specify the address at, and the time and date on, which payment of the repurchase price is to be made (the "Closing"). The date specified shall not be less than ten days nor more than 60 days from the date of the mailing of the notice, and the Participant or his or her successor in interest with respect to the Shares shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or his or her successor in interest and the Shares being purchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or his or her successor in interest.

12.3 It shall be a condition precedent to the validity of any sale or other transfer of any Shares by the Participant that the following restrictions be complied with (except as hereinafter otherwise provided):

(i) No Shares owned by the Participant may be sold, pledged or otherwise transferred (including by gift or devise) to any person or entity, voluntarily, or by operation of law, except in accordance with the terms and conditions hereinafter set forth.

(ii) Before selling or otherwise transferring all or part of the Shares, the Participant shall give written notice of such intention to the Company, which notice shall include the name of the proposed transferee, the proposed purchase price per share, the terms of payment of such purchase price and all other matters relating to such sale or transfer and shall be accompanied by a copy of the binding written agreement of the proposed transferee to purchase the Shares of the Participant. Such notice shall constitute a binding offer by the Participant to sell to the Company such number of the Shares then held by the Participant as are proposed to be sold in the notice at the monetary price per share designated in such notice, payable on the terms offered to the Participant by the proposed transferee (provided, however, that the Company shall not be required to meet any non-monetary terms of the proposed transfer, including, without limitation, delivery of other securities in exchange for the Shares proposed to be sold). The Company shall give written notice to the Participant as to whether such offer has been accepted in whole by the Company within sixty days after its receipt of written notice from the Participant. The Company may only accept such offer in whole and may not accept such offer in part. Such acceptance notice shall fix a time, location and date for the closing on such purchase ("Closing Date") which shall not be less than ten nor more than sixty days after the giving of the acceptance notice. The place for such closing shall be at the Company's principal office. At such closing, the Participant shall accept payment as set forth herein and shall deliver to the Company in exchange therefor certificates for the number of Shares stated in the notice accompanied by duly executed instruments of transfer.

(iii) If the Company shall fail to accept any such offer, the Participant shall be free to sell all, but not less than all, of the Shares set forth in his or her notice to the designated transferee at the price and terms designated in the Participant's notice,

7

provided that (i) such sale is consummated within six months after the giving of notice by the Participant to the Company as aforesaid, and (ii) the transferee first agrees in writing to be bound by the provisions of this Section 12 so that such transferee (and all subsequent transferees) shall thereafter only be permitted to sell or transfer the Shares in accordance with the terms hereof. After the expiration of such six months, the provisions of this Section 12.3 shall again apply with respect to any proposed voluntary transfer of the Participant's Shares.

(iv) The restrictions on transfer contained in this Section 12.3 shall not apply to (a) transfers by the Participant to his or her spouse or children or to a trust for the benefit of his or her spouse or children, (b) transfers by the Participant to his or her guardian or conservator, and (c) or transfers by the Participant, in the event of his or her death, to his or her executor(s) or administrator(s) or to trustee(s) under his or her will (collectively, "Permitted Transferees"); provided however, that in any such event the Shares so transferred in the hands of each such Permitted Transferee shall remain subject to this Agreement, and each such Permitted Transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer.

(v) The provisions of this Section 12.3 may be waived by the Company. Any such waiver may be unconditional or based upon such conditions as the Company may impose.

12.4 In the event that the Participant or his or her successor in interest fails to deliver the Shares to be repurchased by the Company under this Agreement, the Company may elect (a) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Participant or his or her successor in interest upon delivery of such Shares, and (b) immediately to take such action as is appropriate to transfer record title of such Shares from the Participant to the Company and to treat the Participant and such Shares in all respects as if delivery of such Shares had been made as required by this Agreement. The Participant hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

12.5 If the Company shall pay a stock dividend or declare a stock split on or with respect to any of its Common Stock, or otherwise distribute securities of the Company to the holders of its Common Stock, the number of shares of stock or other securities of Company issued with respect to the shares then subject to the restrictions contained in this Agreement shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement. If the Company shall distribute to its stockholders shares of stock of another corporation, the shares of stock of such other corporation, distributed with respect to the Shares then subject to the restrictions contained in this Agreement, shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement.

12.6 If the outstanding shares of Common Stock of the Company shall be subdivided into a greater number of shares or combined into a smaller number of shares, or in the event of a reclassification of the outstanding shares of Common Stock of the Company, or if the Company

8

shall be a party to a merger, consolidation or capital reorganization, there shall be substituted for the Shares then subject to the restrictions contained in this Agreement such amount and kind of securities as are issued in such subdivision, combination, reclassification, merger, consolidation or capital reorganization in respect of the Shares subject immediately prior thereto to the Company's rights to repurchase pursuant to this Agreement.

12.7 The Company shall not be required to transfer any Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Agreement, or to treat as owner of such Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Shares shall have been so sold, assigned or otherwise transferred, in violation of this Agreement.

12.8 The provisions of Sections 12.1, 12.2 and 12.3 shall terminate upon the consummation of a public offering of any of the Company's securities pursuant to a registration statement filed with the Securities and Exchange Commission pursuant to the 1933 Act.

12.9 If, in connection with a registration statement filed by the Company pursuant to the 1933 Act, the Company or its underwriter so requests, the Participant will agree not to sell any Shares for a period not to exceed 180 days following the effectiveness of such registration.

12.10 The Participant acknowledges and agrees that neither the Company, its shareholders nor its directors and officers, has any duty or obligation to disclose to the Participant any material information regarding the business of the Company or affecting the value of the Shares before, at the time of, or following a termination of the employment of the Participant by the Company, including, without limitation, any information concerning plans for the Company to make a public offering of its securities or to be acquired by or merged with or into another firm or entity.

12.11 All certificates representing the Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows: "The shares represented by this certificate are subject to restrictions set forth in a Non-Qualified Stock Option Agreement dated _________, 200_ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

13. NO OBLIGATION TO MAINTAIN RELATIONSHIP.

The Company is not by the Plan or this Option obligated to continue the Participant as an employee, director or consultant of the Company or an Affiliate. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Option is a one-time benefit which does not create any contractual or other right to receive future grants of options, or benefits in lieu of options; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when options shall be granted, the number of shares subject to each option, the option price, and the time or times when each option shall be exercisable, will be at the sole discretion of the Company; (iv) that the Participant's participation in the Plan is voluntary;
(v) that the value of the Option is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Option is not part of normal or

9

expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

14. NOTICES.

Any notices required or permitted by the terms of this Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Pharmaceuticals, Inc.


If to the Participant:



or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given upon the earlier of receipt, one business day following delivery to a recognized courier service or three business days following mailing by registered or certified mail.

15. GOVERNING LAW.

This Agreement shall be construed and enforced in accordance with the law of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

16. BENEFIT OF AGREEMENT.

Subject to the provisions of the Plan and the other provisions hereof, this Agreement shall be for the benefit of and shall be binding upon the heirs, executors, administrators, successors and assigns of the parties hereto.

17. ENTIRE AGREEMENT.

This Agreement, together with the Plan, embodies the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this

10

Agreement shall affect or be used to interpret, change or restrict, the express terms and provisions of this Agreement, provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

18. MODIFICATIONS AND AMENDMENTS.

The terms and provisions of this Agreement may be modified or amended as provided in the Plan.

19. WAIVERS AND CONSENTS.

Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

20. DATA PRIVACY.

By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of options and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

21. CONSENT OF SPOUSE.

If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Exhibit B hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of Section 12.2 of this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Exhibit B.

[REMAINDER OF PAGE INTENTIONALLY LEFT BLANK]

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IN WITNESS WHEREOF, the Company has caused this Agreement to be executed by its duly authorized officer, and the Participant has hereunto set his or her hand, all as of the day and year first above written.

ALNYLAM PHARMACEUTICALS, INC.

By:___________________________________
Name
Title


Participant

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Exhibit A

NOTICE OF EXERCISE OF NON-QUALIFIED STOCK OPTION

[FORM FOR UNREGISTERED SHARES]

To: Alnylam Pharmaceuticals, Inc.



Ladies and Gentlemen:

I hereby exercise my Non-Qualified Stock Option to purchase __________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Pharmaceuticals, Inc. (the "Company"), at the exercise price of $_________ per share, pursuant to and subject to the terms of that certain Non-Qualified Stock Option Agreement between the undersigned and the Company dated ___________, 200_.

I am aware that the Shares have not been registered under the Securities Act of 1933, as amended (the "1933 Act"), or any state securities laws. I understand that the reliance by the Company on exemptions under the 1933 Act is predicated in part upon the truth and accuracy of the statements by me in this Notice of Exercise.

I hereby represent and warrant that (1) I have been furnished with all information which I deem necessary to evaluate the merits and risks of the purchase of the Shares; (2) I have had the opportunity to ask questions concerning the Shares and the Company and all questions posed have been answered to my satisfaction; (3) I have been given the opportunity to obtain any additional information I deem necessary to verify the accuracy of any information obtained concerning the Shares and the Company; and (4) I have such knowledge and experience in financial and business matters that I am able to evaluate the merits and risks of purchasing the Shares and to make an informed investment decision relating thereto.

I hereby represent and warrant that I am purchasing the Shares for my own personal account for investment and not with a view to the sale or distribution of all or any part of the Shares.

I understand that because the Shares have not been registered under the 1933 Act, I must continue to bear the economic risk of the investment for an indefinite time and the Shares cannot be sold unless the Shares are subsequently registered under applicable federal and state securities laws or an exemption from such registration requirements is available.

I agree that I will in no event sell or distribute or otherwise dispose of all or any part of the Shares unless (1) there is an effective registration statement under the 1933 Act and applicable state securities laws covering any such transaction involving the Shares or (2) the Company receives an opinion of my legal counsel (concurred in by legal counsel for the Company) stating that such transaction is exempt from registration or the Company otherwise satisfies itself that such transaction is exempt from registration.

A-1

I consent to the placing of a legend on my certificate for the Shares stating that the Shares have not been registered and setting forth the restriction on transfer contemplated hereby and to the placing of a stop transfer order on the books of the Company and with any transfer agents against the Shares until the Shares may be legally resold or distributed without restriction.

I understand that at the present time Rule 144 of the Securities and Exchange Commission (the "SEC") may not be relied on for the resale or distribution of the Shares by me. I understand that the Company has no obligation to me to register the sale of the Shares with the SEC and has not represented to me that it will register the sale of the Shares.

I understand the terms and restrictions on the right to dispose of the Shares set forth in the 2002 Employee, Director and Consultant Stock Plan and the Non-Qualified Stock Option Agreement, both of which I have carefully reviewed. I consent to the placing of a legend on my certificate for the Shares referring to such restriction and the placing of stop transfer orders until the Shares may be transferred in accordance with the terms of such restrictions.

I have considered the Federal, state and local income tax implications of the exercise of my Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:

Please issue the stock certificate for the Shares (check one):

[ ] to me; or

[ ] to me and _______________, as joint tenants with right of survivorship

and mail the certificate to me at the following address:


My mailing address for shareholder communications, if different from the address listed above is:




Very truly yours,


Participant (signature)

A-2


Print Name


Date


Social Security Number

A-3

Exhibit A

[FORM FOR REGISTERED SHARES]

NOTICE OF EXERCISE OF NON-QUALIFIED STOCK OPTION

TO: Alnylam Pharmaceuticals, Inc.



IMPORTANT NOTICE: This form of Notice of Exercise may only be used at such time as the Company has filed a Registration Statement with the Securities and Exchange Commission under which the issuance of the Shares for which this exercise is being made is registered and such Registration Statement remains effective.

Ladies and Gentlemen:

I hereby exercise my Non-Qualified Stock Option to purchase __________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Pharmaceuticals, Inc. (the "Company"), at the exercise price of $_________ per share, pursuant to and subject to the terms of that certain Non-Qualified Stock Option Agreement between the undersigned and the Company dated ____________, 200_.

I understand the nature of the investment I am making and the financial risks thereof. I am aware that it is my responsibility to have consulted with competent tax and legal advisors about the relevant national, state and local income tax and securities laws affecting the exercise of the Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:

Please issue the Shares (check one):

[ ] to me; or

[ ] to me and _____________________, as joint tenants with right of survivorship,

at the following address:




A-1

My mailing address for shareholder communications, if different from the address listed above, is:




Very truly yours,


Participant (signature)


Print Name


Date


Social Security Number

A-2

Exhibit B

CONSENT OF SPOUSE

I, _____________________, spouse of ____________________, acknowledge that I have read the Non-Qualified Stock Option Agreement dated as of ____________, 200_ (the "Agreement") to which this Consent is attached as Exhibit B and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Shares granted to my spouse pursuant to the Agreement are subject to a right of repurchase in favor of Alnylam Pharmaceuticals, Inc. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Shares shall be similarly bound by the Agreement.

I agree to the repurchase right described in Section 12.2 of the Agreement and I hereby consent to the repurchase of the Shares by the Company and the sale of the Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Shares by an outright bequest of the Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Shares as it would have had pursuant to the Agreement if I had acquired the Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the _______ day of __________, 200_.


Print name:

B-1

EXHIBIT C

RESTRICTED STOCK AGREEMENT

ALNYLAM PHARMACEUTICALS, INC.

AGREEMENT made as of the ______ day of __________, 200__ (the "Grant Date"), between Alnylam Pharmaceuticals, Inc. (the "Company"), a Delaware corporation having its principal place of business in Cambridge, Massachusetts, and ________________________ of ________________________, (the "Participant").

WHEREAS, the Company has adopted the Alnylam Pharmaceuticals, Inc. 2002 Employee, Director and Consultant Stock Plan (the "Plan") to promote the interests of the Company by providing an incentive for employees, directors and consultants of the Company or its Affiliates;

WHEREAS, the parties hereto understand and agree that any terms used and not defined herein have the meanings ascribed to such terms in the Plan and that any and all references herein to employment of the Participant by the Company shall include the Participant's employment or service as an employee, director or consultant of the Company or any Affiliate;

WHEREAS, pursuant to the exercise of an option granted to the Participant pursuant to a Non-Qualified Stock Option Agreement dated ____________ by and between the Company and the Participant issued under the Plan (the "Option Agreement"), which Option Agreement and Plan are hereby incorporated herein by reference, the Participant has elected to purchase _______ shares of the Company's common stock, $.0001 par value per share ("Common Stock"), which have not become vested under the vesting schedule set forth in the Option Agreement (the "Unvested Shares"). The Unvested Shares and the Shares subject to the Option Agreement that have become vested are sometimes collectively referred to herein as the "Shares."

WHEREAS, as required by the Option Agreement, as a condition to the Participant's election to exercise the option, the Participant must execute this Agreement, which sets forth the rights and obligations of the parties with respect to the Unvested Shares acquired upon exercise of the option pursuant to the Option Agreement; and

WHEREAS, Participant wishes to accept said offer in accordance with the provisions of the Plan, all on the terms and conditions hereinafter set forth.

NOW, THEREFORE, in consideration of the premises and the mutual covenants contained herein and for other good and valuable consideration, the receipt and sufficiency of which are hereby acknowledged, the parties hereto hereby agree as follows:

1. Company's Lapsing Repurchase Right.

(a) Lapsing Repurchase Right. Except as set forth in Subsection 1(b) hereof, in the event that for any reason the Participant no longer is an employee, director or consultant of the Company or an Affiliate, the Company (or its designee) shall have the option, but not the

C-1

obligation, to purchase from the Participant (or the Participant's Survivor), and, in the event the Company exercises such option, the Participant (or the Participant's Survivor) shall be obligated to sell to the Company (or its designee), at a price per Share equal to the Purchase Price, all or any part of the Unvested Shares determined as of the date of such termination of service (the "Lapsing Repurchase Right"). The Lapsing Repurchase Right with respect to the Unvested Shares shall terminate as to such Unvested Shares in accordance with the vesting schedule set forth in Section 3 of the Option Agreement. The Company's Lapsing Repurchase Right shall be valid for a period of one year commencing with the date of such termination of employment or service. Notwithstanding any other provision hereof, in the event the Company is prohibited during such one year period from exercising its Lapsing Repurchase Right by Section 160 of the Delaware General Corporation Law as amended from time to time (or any successor provision), then the time period during which such Lapsing Repurchase Right may be exercised shall be extended until 30 days after the Company is first not so prohibited.

(b) Effect of Termination for Disability or upon Death. The following rules apply if the Participant ceases to be an employee, director or consultant of the Company by reason of Disability or death: to the extent the Company's Lapsing Repurchase Right has not lapsed as of the date of Disability or death, as case may be, the Company may exercise such Lapsing Repurchase Right; provided, however, that the Company's Lapsing Repurchase Right shall be deemed to have lapsed to the extent of a pro rata portion of the Unvested Shares through the date of Disability or death, as would have lapsed had the Participant not become Disabled or died, as the case may be. The proration shall be based upon the number of days accrued in such current vesting period prior to the Participant's date of Disability or death, as the case may be.

(c) Closing. In the event that the Company exercises the Lapsing Repurchase Right, the Company shall notify the Participant, or, in the case of the Participant's death, his or her Survivor, in writing of its intent to repurchase the Unvested Shares. Such notice may be mailed by the Company up to and including the last day of the time period provided for above for exercise of the Lapsing Repurchase Right. The notice shall specify the place, time and date for payment of the repurchase price (the "Closing") and the number of Unvested Shares with respect to which the Company is exercising the Lapsing Repurchase Right. The Closing shall be not less than ten days nor more than 60 days from the date of mailing of the notice, and the Participant or the Participant's Survivor with respect to the Unvested Shares which the Company elects to repurchase shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or the Participant's Survivor and the Unvested Shares being repurchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(d) Escrow. The certificates representing all Unvested Shares acquired by the Participant hereunder which from time to time are subject to the Lapsing Repurchase Right shall be delivered to the Company and the Company shall hold such Unvested Shares in escrow as provided in this Subsection 1(d). Promptly following receipt by the Company of a written request from the Participant, the Company shall release from escrow and deliver to the Participant a certificate for the whole number of Unvested Shares, if any, as to which the Company's Lapsing Repurchase Right has lapsed. In the event of a repurchase by the Company

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of Unvested Shares subject to the Lapsing Repurchase Right, the Company shall release from escrow and cancel a certificate for the number of Unvested Shares so repurchased. Any securities distributed in respect of the Unvested Shares held in escrow, including, without limitation, shares issued as a result of stock splits, stock dividends or other recapitalizations, shall also be held in escrow in the same manner as the Unvested Shares.

(e) Prohibition on Transfer. The Participant recognizes and agrees that all Unvested Shares which are subject to the Lapsing Repurchase Right may not be sold, transferred, assigned, hypothecated, pledged, encumbered or otherwise disposed of, whether voluntarily or by operation of law, other than to the Company (or its designee). However, the Participant, with the approval of the Administrator, may transfer the Unvested Shares for no consideration to or for the benefit of the Participant's Immediate Family (including, without limitation, to a trust for the benefit of the Participant's Immediate Family or to a partnership or limited liability company for one or more members of the Participant's Immediate Family), subject to such limits as the Administrator may establish, and the transferee shall remain subject to all the terms and conditions applicable to this Agreement prior to such transfer and each such transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer. The term "Immediate Family" shall mean the Participant's spouse, former spouse, parents, children, stepchildren, adoptive relationships, sisters, brothers, nieces and nephews and grandchildren (and, for this purpose, shall also include the Participant. The Company shall not be required to transfer any Unvested Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Subsection 1(e), or to treat as the owner of such Unvested Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Unvested Shares shall have been so sold, assigned or otherwise transferred, in violation of this Subsection 1(e). The Participant further recognizes and agrees that all Shares remain subject to Section 12 of the Option Agreement, except that with respect to the Unvested Shares subject to the Lapsing Repurchase Right, this Agreement will supercede Section 12.3 of the Option Agreement.

(f) Failure to Deliver Unvested Shares to be Repurchased. In the event that the Unvested Shares to be repurchased by the Company under this Agreement are not in the Company's possession pursuant to Subsection 1(d) above or otherwise and the Participant or the Participant's Survivor fails to deliver such Unvested Shares to the Company (or its designee), the Company may elect (i) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Participant or the Participant's Survivor upon delivery of such Unvested Shares, and (ii) immediately to take such action as is appropriate to transfer record title of such Unvested Shares from the Participant to the Company (or its designee) and to treat the Participant and such Unvested Shares in all respects as if delivery of such Unvested Shares had been made as required by this Agreement. The Participant hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

(g) Adjustments. The Plan and the Option Agreement contain provisions covering the treatment of Shares in a number of contingencies such as stock splits and mergers. Provisions in the Plan and the Option Agreement for adjustment with respect to the Shares and

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the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference.

2. Legend. In addition to any legend required pursuant to the Plan or the Option Agreement, all certificates representing the Unvested Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows:

"The shares represented by this certificate are subject to restrictions set forth in a Restricted Stock Agreement dated as of __________, 200_ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

3. Purchase for Investment. If the offering and sale of the Unvested Shares have not been effectively registered under the Securities Act of 1933, as amended, the Participant hereby represents and warrants that he or she is acquiring the Unvested Shares for his or her own account, for investment, and not with a view to, or for sale in connection with, the distribution of any such Unvested Shares.

4. Provisions of Agreement Controlling. The Participant specifically understands and agrees that the Unvested Shares issued under the Plan are being sold to the Participant pursuant to the Plan and the Option Agreement, a copy of which Plan and Option Agreement the Participant acknowledges he or she has read and understands and by which Plan and Option Agreement he or she agrees to be bound. The provisions of the Plan and the Option Agreement are incorporated herein by reference. In the event of a conflict between the terms and conditions of the Plan, this Agreement and the Option Agreement, the provisions of this Agreement will control.

5. Tax Liability of the Participant and Payment of Taxes. The Participant acknowledges and agrees that any income or other taxes due from the Participant with respect to the Unvested Shares issued pursuant to this Agreement, including, without limitation, the Lapsing Repurchase Right, shall be the Participant's responsibility. Without limiting the foregoing, the Participant agrees that, to the extent that the lapsing of restrictions on disposition of any of the Unvested Shares or the declaration of dividends on any such shares before the lapse of such restrictions on disposition results in the Participant's being deemed to be in receipt of earned income under the provisions of the Code, the Company shall be entitled to immediate payment from the Participant of the amount of any tax required to be withheld by the Company.

Upon execution of this Agreement, the Participant may file an election under Section 83 of the Code in substantially the form attached as Attachment I. The Participant acknowledges that if she does not file such an election, as the Unvested Shares are released from the Lapsing Repurchase Right in accordance with Section 1, the Participant will have income for tax purposes equal to the fair market value of the Unvested Shares at such date, less the price paid for the Unvested Shares by the Participant.

6. Securities Law Compliance. The Participant specifically acknowledges and agrees that any sales of Unvested Shares shall be made in accordance with the requirements of

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the Securities Act of 1933, as amended, in a transaction as to which the Company shall have received an opinion of counsel satisfactory to it confirming such compliance.

7. Equitable Relief. The Participant specifically acknowledges and agrees that in the event of a breach or threatened breach of the provisions of this Agreement, the Option Agreement or the Plan, including the attempted transfer of the Unvested Shares by the Participant in violation of this Agreement or the Option Agreement, monetary damages may not be adequate to compensate the Company, and, therefore, in the event of such a breach or threatened breach, in addition to any right to damages, the Company shall be entitled to equitable relief in any court having competent jurisdiction. Nothing herein shall be construed as prohibiting the Company from pursuing any other remedies available to it for any such breach or threatened breach.

8. No Obligation to Maintain Relationship. The Company is not by the Plan, the Option Agreement or this Agreement obligated to continue the Participant as an employee, director or consultant of the Company. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Shares is a one-time benefit which does not create any contractual or other right to receive future grants of shares, or benefits in lieu of shares; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when shares shall be granted, the number of shares to be granted, the Purchase Price, and the time or times when each share shall be free from the Lapsing Repurchase Right, will be at the sole discretion of the Company; (iv) that the Participant's participation in the Plan is voluntary; (v) that the value of the Shares is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Shares are not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

9. Notices. Any notices required or permitted by the terms of this Agreement, the Option Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Pharmaceuticals, Inc.


If to the Participant:


or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given on the earliest of receipt, one

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business day following delivery by the sender to a recognized courier service, or three business days following mailing by registered or certified mail.

10. Binding Effect. This Agreement shall be for the benefit of and shall be binding upon the parties hereto, upon their respective successors and assigns and upon the Participant's heirs, executors, administrators.

11. Governing Law. This Agreement shall be construed and enforced in accordance with the laws of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, whether at law or in equity, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

12. Severability. If any provision of this Agreement is held to be invalid or unenforceable by a court of competent jurisdiction, then such provision or provisions shall be modified to the extent necessary to make such provision valid and enforceable, and to the extent that this is impossible, then such provision shall be deemed to be excised from this Agreement, and the validity, legality and enforceability of the rest of this Agreement shall not be affected thereby.

13. Entire Agreement. This Agreement, together with the Plan and the Option Agreement, constitutes the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement, the Option Agreement or the Plan shall affect or be used to interpret, change or restrict the express terms and provisions of this Agreement provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

14. Modifications and Amendments; Waivers and Consents. The terms and provisions of this Agreement may be modified or amended as provided in the Plan. Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

15. Consent of Spouse. If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Attachment II hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Unvested Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of all restrictions contained

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in this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Attachment II.

16. Counterparts. This Agreement may be executed in one or more counterparts, and by different parties hereto on separate counterparts, each of which shall be deemed an original, but all of which together shall constitute one and the same instrument.

17. Data Privacy. By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of Shares and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

[THE NEXT PAGE IS THE SIGNATURE PAGE]

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IN WITNESS WHEREOF, the parties hereto have executed this Agreement as of the day and year first above written.

ALNYLAM PHARMACEUTICALS, INC.

By:_______________________________________
Name:
Title:


PARTICIPANT:


Print name:

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ATTACHMENT I

ELECTION TO INCLUDE GROSS INCOME IN YEAR
OF TRANSFER PURSUANT TO SECTION 83(B)
OF THE INTERNAL REVENUE CODE OF 1986, AS AMENDED

In accordance with Section 83(b) of the Internal Revenue Code of 1986, as amended (the "Code"), the undersigned hereby elects to include in his gross income as compensation for services the excess, if any, of the fair market value of the property (described below) at the time of transfer over the amount paid for such property.

The following sets for the information required in accordance with the Code and the regulations promulgated hereunder:

1. The name, address and social security number of the undersigned are:

Name:
Address:
Social Security No.:

2. The description of the property with respect to which the election is being made is as follows:

____________ (___) shares (the "Shares") of Common Stock, $.0001 par value per share, of Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company").

3. This election is made for the calendar year ______, with respect to the transfer of the property to the Taxpayer on_________________.

4. Description of restrictions: The property is subject to the following restrictions:

In the event taxpayer's employment with the Company or an Affiliate is terminated, the Company may repurchase all or any portion of the Shares determined as set forth below at the acquisition price paid by the taxpayer:

A. If the termination takes place on or prior to ___________, the Purchase Option will apply to all of the Shares.

B. If the termination takes place after __________, 200_, the number of Shares to which the Purchase Option applies shall be _____________ (___) Shares less (i) ___________ (___) Shares and (ii) ___________ (___) Shares for each period ending each _____, _____, _____ and ________________ elapsed after __________, 200_ if the taxpayer is employed by the Company or an Affiliate.

5. The fair market value at time of transfer (determined without regard to any restrictions other than restrictions which by their terms will never lapse) of the property with respect to which this election is being made was not more than $______ per Share.

I-1

6. The amount paid by taxpayer for said property was $______ per Share.

7. A copy of this statement has been furnished to the Company.

Signed this _______ day of ________, 200_.


Print Name:

I-2

ATTACHMENT II

CONSENT OF SPOUSE

I, __________________________, spouse of ________________________________, acknowledge that I have read the RESTRICTED STOCK AGREEMENT dated as of __________, 200__ (the "Agreement") to which this Consent is attached as Attachment II and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Unvested Shares granted to my spouse pursuant to the Agreement are subject to a Lapsing Repurchase Right in favor of Alnylam Pharmaceuticals, Inc. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Unvested Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Unvested Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Unvested Shares shall be similarly bound by the Agreement.

I agree to the Lapsing Repurchase Right described in the Agreement and I hereby consent to the repurchase of the Unvested Shares by the Company and the sale of the Unvested Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Unvested Shares by an outright bequest of the Unvested Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Unvested Shares as it would have had pursuant to the Agreement if I had acquired the Unvested Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the ________ day of _________, 200_.


Print name:

II-1


RESTRICTED STOCK AGREEMENT

ALNYLAM PHARMACEUTICALS, INC.

AGREEMENT made as of the____________ day of __________ , 200__ (the "Grant Date"), between Alnylam Pharmaceuticals, Inc. (the "Company"), a Delaware corporation having its principal place of business in Cambridge, Massachusetts, and __________ of _________________, (the "Participant").

WHEREAS, the Company has adopted the Alnylam Pharmaceuticals, Inc. 2002 Employee, Director and Consultant Stock Plan (the "Plan") to promote the interests of the Company by providing an incentive for employees, directors and consultants of the Company or its Affiliates;

WHEREAS, pursuant to the provisions of the Plan, the Company desires to offer for sale to the Participant shares of the Company's common stock, $.0001 par value per share ("Common Stock"), in accordance with the provisions of the Plan, all on the terms and conditions hereinafter set forth;

WHEREAS, Participant wishes to accept said offer; and

WHEREAS, the parties hereto understand and agree that any terms used and not defined herein have the meanings ascribed to such terms in the Plan.

NOW, THEREFORE, in consideration of the premises and the mutual covenants contained herein and for other good and valuable consideration, the receipt and sufficiency of which are hereby acknowledged, the parties hereto hereby agree as follows:

1. Terms of Purchase. The Participant hereby accepts the offer of the Company to issue to the Participant, in accordance with the terms of the Plan and this Agreement, __________ Shares of the Company's Common Stock (such shares, subject to adjustment pursuant to Section 23 of the Plan and Subsection 2.1(i) hereof, the "Granted Shares") at a purchase price per share of $__________ (the "Purchase Price"), receipt of which is hereby acknowledged by the Company. Payment shall be made in accordance with Section 9 of the Plan.

2.1 Company's Lapsing Repurchase Right.

(a) Lapsing Repurchase Right. Except as set forth in Subsections 2.1(b) hereof, in the event that for any reason the Participant no longer is an employee, director or consultant of the Company or an Affiliate prior to the fourth anniversary of the Grant Date, the Company (or its designee) shall have the option, but not the obligation, to purchase from the Participant (or the Participant's Survivor), and, in the event the Company exercises such option, the Participant (or the Participant's Survivor) shall be obligated to sell to the Company (or its designee), at a price per Granted Share equal to the Purchase Price, all or any part of the Granted Shares set forth in clauses (i),
(ii) and (iii) below (the "Lapsing Repurchase Right"). The Company's Lapsing Repurchase Right shall be valid for a period of one year commencing with the date of such termination of employment or service. Notwithstanding any other provision hereof, in the event


the Company is prohibited during such one year period from exercising its Lapsing Repurchase Right by Section 160 of the Delaware General Corporation Law as amended from time to time (or any successor provision), then the time period during which such Lapsing Repurchase Right may be exercised shall be extended until 30 days after the Company is first not so prohibited.

(i) If such termination is prior to the first anniversary of the Grant Date, the Company shall have the option to repurchase all of the Granted Shares acquired by the Participant hereunder.

(ii) If such termination is on or after the first anniversary of the Grant Date, the Company shall have the option to repurchase all of the Granted Shares less __________ of the Granted Shares and an additional ______ for each period ending on each __________, __________, __________ and __________ after the first anniversary of the Grant Date that the Participant continues to serve as an employee, director or consultant of the Company or an Affiliate.

(iii) Notwithstanding anything to the contrary contained in this Agreement, in the event the Company or an Affiliate terminates the Participant's employment or service for "cause" (as defined in the Plan) or in the event the Administrator determines, within 90 days after the Participant's termination, that either prior or subsequent to the Participant's termination the Participant engaged in conduct that would constitute "cause," the Company shall have the option to repurchase all of the Granted Shares acquired by the Participant hereunder at the Purchase Price.

(b) Effect of Termination for Disability or upon Death. Except as otherwise provided in Subsection 2.1(a)(iii) above, the following rules apply if the Participant ceases to be an employee, director or consultant of the Company or an Affiliate by reason of Disability or death: to the extent the Company's Lapsing Repurchase Right has not lapsed as of the date of Disability or death, as case may be, the Company may exercise such Lapsing Repurchase Right; provided, however, that the Company's Lapsing Repurchase Right shall be deemed to have lapsed to the extent of a pro rata portion of the Granted Shares through the date of Disability or death, as would have lapsed had the Participant not become Disabled or died, as the case may be. The proration shall be based upon the number of days accrued in such current vesting period prior to the Participant's date of Disability or death, as the case may be.

(c) Closing. In the event that the Company exercises the Lapsing Repurchase Right, the Company shall notify the Participant, or, in the case of the Participant's death, his or her Survivor, in writing of its intent to repurchase the Granted Shares. Such notice may be mailed by the Company up to and including the last day of the time period provided for above for exercise of the Lapsing Repurchase Right. The notice shall specify the place, time and date for payment of the repurchase price (the "Closing") and the number of Granted Shares with respect to which the Company is exercising the Lapsing Repurchase Right. The Closing shall be not less than ten days nor more than 60 days from the date of mailing of the notice, and the Participant or the Participant's Survivor with respect to the Granted Shares which the Company elects to repurchase shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or the Participant's Survivor and the Granted Shares being repurchased, duly endorsed for transfer,

2

shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(d) Escrow. The certificates representing all Granted Shares acquired by the Participant hereunder which from time to time are subject to the Lapsing Repurchase Right shall be delivered to the Company and the Company shall hold such Granted Shares in escrow as provided in this Subsection 2.1(d). Promptly following receipt by the Company of a written request from the Participant, the Company shall release from escrow and deliver to the Participant a certificate for the whole number of Granted Shares, if any, as to which the Company's Lapsing Repurchase Right has lapsed. In the event of a repurchase by the Company of Granted Shares subject to the Lapsing Repurchase Right, the Company shall release from escrow and cancel a certificate for the number of Granted Shares so repurchased. Any securities distributed in respect of the Granted Shares held in escrow, including, without limitation, shares issued as a result of stock splits, stock dividends or other recapitalizations, shall also be held in escrow in the same manner as the Granted Shares.

(e) Prohibition on Transfer. The Participant recognizes and agrees that all Granted Shares which are subject to the Lapsing Repurchase Right may not be sold, transferred, assigned, hypothecated, pledged, encumbered or otherwise disposed of, whether voluntarily or by operation of law, other than to the Company (or its designee). However, the Participant, with the approval of the Administrator, may transfer the Granted Shares for no consideration to or for the benefit of the Participant's Immediate Family (including, without limitation, to a trust for the benefit of the Participant's Immediate Family or to a partnership or limited liability company for one or more members of the Participant's Immediate Family), subject to such limits as the Administrator may establish, and the transferee shall remain subject to all the terms and conditions applicable to this Agreement prior to such transfer and each such transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer. The term "Immediate Family" shall mean the Participant's spouse, former spouse, parents, children, stepchildren, adoptive relationships, sisters, brothers, nieces and nephews and grandchildren (and, for this purpose, shall also include the Participant. The Company shall not be required to transfer any Granted Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Subsection 2.1(e), or to treat as the owner of such Granted Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Granted Shares shall have been so sold, assigned or otherwise transferred, in violation of this Subsection 2.1(e).

(f) Failure to Deliver Granted Shares to be Repurchased. In the event that the Granted Shares to be repurchased by the Company under this Agreement are not in the Company's possession pursuant to Subsection 2.1(d) above or otherwise and the Participant or the Participant's Survivor fails to deliver such Granted Shares to the Company (or its designee), the Company may elect (i) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Participant or the Participant's Survivor upon delivery of such Granted Shares, and (ii) immediately to take such action as is appropriate to transfer record title of such Granted Shares from the Participant to the Company (or its designee) and to treat the Participant and such Granted Shares in all respects as if delivery of such Granted Shares had been made as required by this Agreement. The Participant hereby irrevocably grants

3

the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

(g) Adjustments. The Plan contains provisions covering the treatment of Shares in a number of contingencies such as stock splits and mergers. Provisions in the Plan for adjustment with respect to the Shares and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference, provided, however, in the event of a Change of Control (as defined in the Plan) which the Administrator (as defined in the Plan) or the Successor Board (as defined in the Plan) makes provisions for the treatment of Stock Grants under (A) clause (i) of the second paragraph of Section 23(B) of the Plan, an additional one-sixteenth (1/16) of the Shares shall become fully vested and the Company's Lapsing Repurchase Right shall terminate as to such additional one-sixteenth (1/16) of the Shares immediately prior to such Change of Control and the remaining unvested Shares shall vest in accordance with the provisions of this Agreement, provided, however, if the Participant's employment with the Company is Terminated (as defined below), fifty percent (50%) of all unvested Shares shall become fully vested and the Company's Lapsing Repurchase Right shall terminate with respect to such fifty percent (50%) of the Shares immediately prior to such termination (for purposes of this Section 2.1(g), the Participant shall be deemed to have been "Terminated" if at any time before the six-month anniversary of the closing of such Change of Control, (i) the Employee shall fail to be vested with power and authority analogous to the Participant's title and/or office prior to such Change of Control, (ii) the Participant shall lose any significant duties or responsibilities attending such office, (iii) there shall occur a reduction in the Participant's base compensation, or (iv) the Participant's employment with the Company or an Affiliate, or its successor is terminated without "cause" (as defined in the Plan)) or (B) either clause (ii) or (iii) of the second paragraph of Section 23(B) of the Plan, all Shares shall become fully vested immediately prior to such Change of Control and the Company's Lapsing Repurchase Right shall terminate immediately prior to such Change of Control.

2.2 General Restrictions on Transfer of Granted Shares.

(a) Limitations on Transfer. In addition to the restrictions set forth above in Section 2.1, the Granted Shares acquired by the Participant hereunder and no longer subject to the provisions of Section 2.1 herein (the "Vested Shares") shall not be transferred by the Participant except as permitted herein, shall be subject to the provisions of Sections 2.1 (d), (e) and (f) above and shall be subject to the repurchase rights described herein.

(b) Right to Repurchase following Termination of Service. If the Participant's service as an employee, director or consultant with the Company or an Affiliate shall be terminated for any reason other than for "cause" (as defined in the Plan), including due to death or Disability, then the Company shall have the option to repurchase the Vested Shares not previously repurchased in accordance with the provisions of Section 2.1 of this Agreement as follows:

(i) The Company's option to repurchase the Vested Shares in the event of termination of service under this Section 2.2(b) shall be valid for a period of one year commencing with the date of such termination of service.

4

(ii) In the event the Company shall be entitled to and shall elect to exercise its option to repurchase the Vested Shares under this Section 2.2(b), the Company shall notify the Participant, or in case of death, his or her Survivor, in writing of its intent to repurchase the Vested Shares. Such written notice may be mailed by the Company up to and including the last day of the time period provided for in Section 2.2(b)(i) for exercise of the Company's option to repurchase.

(iii) The written notice to the Participant shall specify the address at, and the time and date on, which payment of the Repurchase Price (as defined herein) is to be made (the "Closing"). The date specified shall not be less than ten days nor more than 60 days from the date of the mailing of the notice, and the Participant or the Participant's Survivor with respect to the Vested Shares shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the Repurchase Price (as defined below) shall be delivered to the Participant or the Participant's Survivor and the Vested Shares being purchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(iv) The price paid per share for any Vested Shares repurchased hereunder (the "Repurchase Price") shall equal the Fair Market Value of such Vested Shares determined in accordance with the Plan as of the date of termination of service, provided, however, in the event of a termination by the Company or an Affiliate for "cause" (as defined in the Plan), the per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Purchase Price.

(c) Right to Repurchase on Proposed Transfer. It shall be a condition precedent to the validity of any sale or other transfer of any Vested Shares by the Participant that the following restrictions be complied with (except as hereinafter otherwise provided):

(i) No Vested Shares owned by the Participant may be sold, pledged or otherwise transferred (including by gift or devise) to any person or entity, voluntarily, or by operation of law, except in accordance with the terms and conditions hereinafter set forth.

(ii) Before selling or otherwise transferring all or part of the Vested Shares, the Participant shall give written notice of such intention to the Company which notice shall include the name of the proposed transferee, the proposed purchase price per share, the terms of payment of such purchase price and all other matters relating to such sale or transfer and shall be accompanied by a copy of the binding written agreement of the proposed transferee to purchase the Vested Shares of the Participant. Such notice shall constitute a binding offer by the Participant to sell to the Company such number of the Vested Shares then held by the Participant as are proposed to be sold in the notice at the monetary price per share designated in such notice, payable on the terms offered to the Participant by the proposed transferee (provided, however, that the Company shall not be required to meet any non-monetary terms of the proposed transfer, including, without limitation, delivery of other securities in exchange for the Vested Shares proposed to be sold). The Company shall give written notice to the Participant as to whether such offer

5

has been accepted in whole by the Company within 60 days after its receipt of written notice from the Participant. The Company may only accept such offer in whole and may not accept such offer in part. Such acceptance notice shall specify a place, a time, and date for the closing on such purchase (the "Closing") which shall not be less than ten nor more than 60 days after the giving of the acceptance notice. At the Closing, the Participant shall accept payment as set forth herein and shall deliver to the Company in exchange therefor the Granted Shares being repurchased, duly endorsed for transfer, to the extent that they are not then in the possession of the Company.

(iii) If the Company shall fail to accept any such offer, the Participant shall be free to sell all, but not less than all, of the Vested Shares set forth in her notice to the designated transferee at the price and terms designated in the Participant's notice, provided that (i) such sale is consummated within six months after the giving of notice by the Participant to the Company as aforesaid, and (ii) the transferee first agrees in writing to be bound by the provisions of this Section 2.2(c) so that he or she (and all subsequent transferees) shall thereafter only be permitted to sell or transfer the Vested Shares in accordance with the terms hereof. After the expiration of such six months, the provisions of this Section 2.2(c) shall again apply with respect to any proposed voluntary transfer of the Vested Shares.

(iv) The provisions of this Section 2.2(c) may be waived by the Company. Any such waiver may be unconditional or based upon such conditions as the Company may impose.

(v) The restrictions on transfer contained in this Section 2.2(c) shall not apply to (a) transfers by the Participant to his or her spouse or children or to a trust for the benefit of his or her spouse or children, (b) transfers by the Participant to his or her guardian or conservator, and (c) or transfers by the Participant, in the event of his or her death, to his or her executor(s) or administrator(s) or to trustee(s) under his or her will (collectively, "Permitted Transferees"); provided however, that in any such event the Vested Shares so transferred in the hands of each such Permitted Transferee shall remain subject to this Agreement, and each such Permitted Transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer.

(d) The provisions of Section 2.2 (a) through (d) shall terminate upon the consummation of a public offering of any of the Company's securities pursuant to a registration statement filed with the Securities and Exchange Commission pursuant to the Securities Act of 1933, as amended (the "1933 Act").

(e) If in connection with a registration statement filed by the Company pursuant to the 1933 Act, the Company or its underwriter so requests, the Participant will agree not to sell any of her Vested Shares for a period not to exceed the lesser of: (i) 180 days following the effectiveness of such registration statement or (ii) such period as the officers and directors of the Company agree not to sell their Common Stock of the Company.

(f) The Participant acknowledges and agrees that neither the Company nor, its shareholders nor its directors and officers, has any duty or obligation to disclose to the

6

Participant any material information regarding the business of the Company or affecting the value of the Shares before, at the time of, or following a termination of the employment of the Participant by the Company or an Affiliate, including, without limitation, any information concerning plans for the Company to make a public offering of its securities or to be acquired by or merged with or into another firm or entity.

2. Legend. In addition to any legend required pursuant to the Plan, all certificates representing the Granted Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows:

"The shares represented by this certificate are subject to restrictions set forth in a Restricted Stock Agreement dated as of ___, 200__ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

3. Purchase for Investment; Securities Law Compliance. If the offering and sale of the Granted Shares have not been effectively registered under the 1933 Act, the Participant hereby represents and warrants that he or she is acquiring the Granted Shares for his or her own account, for investment, and not with a view to, or for sale in connection with, the distribution of any such Granted Shares. The Participant specifically acknowledges and agrees that any sales of Granted Shares shall be made in accordance with the requirements of the 1933 Act, in a transaction as to which the Company shall have received an opinion of counsel satisfactory to it confirming such compliance. The Participant shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing the Shares issued:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is then available, and (2) there shall have been compliance with all applicable state securities laws."

4. Incorporation of the Plan. The Participant specifically understands and agrees that the Granted Shares issued under the Plan are being sold to the Participant pursuant to the Plan, a copy of which Plan the Participant acknowledges he or she has read and understands and by which Plan he or she agrees to be bound. The provisions of the Plan are incorporated herein by reference.

5. Tax Liability of the Participant and Payment of Taxes. The Participant acknowledges and agrees that any income or other taxes due from the Participant with respect to the Granted Shares issued pursuant to this Agreement, including, without limitation, the Lapsing Repurchase Right, shall be the Participant's responsibility. Without limiting the foregoing, the Participant agrees that, to the extent that the lapsing of restrictions on disposition of any of the Granted Shares or the declaration of dividends on any such shares before the lapse of such restrictions on disposition results in the Participant's being deemed to be in receipt of earned

7

income under the provisions of the Code, the Company shall be entitled to immediate payment from the Participant of the amount of any tax required to be withheld by the Company.

Upon execution of this Agreement, the Participant may file an election under Section 83 of the Code in substantially the form attached as Exhibit B. The Participant acknowledges that if she does not file such an election, as the Granted Shares are released from the Lapsing Repurchase Right in accordance with
Section 2.1, the Participant will have income for tax purposes equal to the fair market value of the Granted Shares at such date, less the price paid for the Granted Shares by the Participant.

6. Equitable Relief. The Participant specifically acknowledges and agrees that in the event of a breach or threatened breach of the provisions of this Agreement or the Plan, including the attempted transfer of the Granted Shares by the Participant in violation of this Agreement, monetary damages may not be adequate to compensate the Company, and, therefore, in the event of such a breach or threatened breach, in addition to any right to damages, the Company shall be entitled to equitable relief in any court having competent jurisdiction. Nothing herein shall be construed as prohibiting the Company from pursuing any other remedies available to it for any such breach or threatened breach.

7. No Obligation to Maintain Relationship. The Company is not by the Plan or this Agreement obligated to continue the Participant as an employee, director or consultant of the Company or an Affiliate. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Shares is a one-time benefit which does not create any contractual or other right to receive future grants of shares, or benefits in lieu of shares; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when shares shall be granted, the number of shares to be granted, the purchase price, and the time or times when each share shall be free from a lapsing repurchase right, will be at the sole discretion of the Company; (iv) that the Participant's participation in the Plan is voluntary; (v) that the value of the Shares is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Shares are not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

8. Notices. Any notices required or permitted by the terms of this Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Pharmaceuticals, Inc.



8

If to the Participant:




or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given on the earliest of receipt, one business day following delivery by the sender to a recognized courier service, or three business days following mailing by registered or certified mail.

9. Benefit of Agreement. Subject to the provisions of the Plan and the other provisions hereof, this Agreement shall be for the benefit of and shall be binding upon the heirs, executors, administrators, successors and assigns of the parties hereto.

10. Governing Law. This Agreement shall be construed and enforced in accordance with the laws of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, whether at law or in equity, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

11. Severability. If any provision of this Agreement is held to be invalid or unenforceable by a court of competent jurisdiction, then such provision or provisions shall be modified to the extent necessary to make such provision valid and enforceable, and to the extent that this is impossible, then such provision shall be deemed to be excised from this Agreement, and the validity, legality and enforceability of the rest of this Agreement shall not be affected thereby.

12. Entire Agreement. This Agreement, together with the Plan, constitutes the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement shall affect or be used to interpret, change or restrict the express terms and provisions of this Agreement provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

13. Modifications and Amendments; Waivers and Consents. The terms and provisions of this Agreement may be modified or amended as provided in the Plan. Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

9

14. Consent of Spouse. If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Exhibit A hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Granted Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of all restrictions contained in this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Exhibit A.

15. Counterparts. This Agreement may be executed in one or more counterparts, and by different parties hereto on separate counterparts, each of which shall be deemed an original, but all of which together shall constitute one and the same instrument.

16. Data Privacy. By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of Shares and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

[THE NEXT PAGE IS THE SIGNATURE PAGE]

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IN WITNESS WHEREOF, the parties hereto have executed this Agreement as of the day and year first above written.

ALNYLAM PHARMACEUTICALS, INC.

By:_________________________________
Name:
Title:

PARTICIPANT:


Print name:

11

EXHIBIT A

CONSENT OF SPOUSE

I_______ , spouse of_________, acknowledge that I have read the RESTRICTED STOCK AGREEMENT dated as of ________, 200_ (the "Agreement") to which this Consent is attached as Exhibit A and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Granted Shares granted to my spouse pursuant to the Agreement are subject to a Lapsing Repurchase Right in favor of Alnylam Pharmaceuticals, Inc. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Granted Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Granted Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Granted Shares shall be similarly bound by the Agreement.

I agree to the Lapsing Repurchase Right described in the Agreement and I hereby consent to the repurchase of the Granted Shares by the Company and the sale of the Granted Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Granted Shares by an outright bequest of the Granted Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Granted Shares as it would have had pursuant to the Agreement if I had acquired the Granted Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the_________ day of___________ , 200_.


Print name:

A-1

EXHIBIT B

ELECTION TO INCLUDE GROSS INCOME IN YEAR
OF TRANSFER PURSUANT TO SECTION 83(B)
OF THE INTERNAL REVENUE CODE OF 1986, AS AMENDED

In accordance with Section 83(b) of the Internal Revenue Code of 1986, as amended (the "Code"), the undersigned hereby elects to include in his gross income as compensation for services the excess, if any, of the fair market value of the property (described below) at the time of transfer over the amount paid for such property.

The following sets for the information required in accordance with the Code and the regulations promulgated hereunder:

1. The name, address and social security number of the undersigned are:

Name:
Address:
Social Security No.:

2. The description of the property with respect to which the election is being made is as follows:

__________ (_____) shares (the "Shares") of Common Stock, $.0001 par value per share, of Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company").

3. This election is made for the calendar year _____, with respect to the transfer of the property to the Taxpayer on __________.

4. Description of restrictions: The property is subject to the following restrictions:

In the event taxpayer's employment with the Company or an Affiliate is terminated, the Company may repurchase all or any portion of the Shares determined as set forth below at the acquisition price paid by the taxpayer:

A. If the termination takes place on or prior to_____________ , the Purchase Option will apply to all of the Shares.

B. If the termination takes place after_______ , 200_, the number of Shares to which the Purchase Option applies shall be________ (__) Shares less (i)________ (_____) Shares and (ii)__________ (_____) Shares for each period ending each___________ ,__________ and __________ elapsed after_________ , 200__ if the taxpayer is employed by the Company or an Affiliate.

5. The fair market value at time of transfer (determined without regard to any restrictions other than restrictions which by their terms will never lapse) of the property with respect to which this election is being made was not more than $___________ per Share.

B-1

6. The amount paid by taxpayer for said property was $___________ per Share.

7. A copy of this statement has been furnished to the Company.

Signed this ________ day of_____________200__.


Print Name:

B-2

EXHIBIT 10.2

ALNYLAM HOLDING CO.

2003 EMPLOYEE, DIRECTOR AND CONSULTANT STOCK PLAN, AS AMENDED

1. DEFINITIONS.

Unless otherwise specified or unless the context otherwise requires, the following terms, as used in this Alnylam Holding Co. 2003 Employee, Director and Consultant Stock Plan, have the following meanings:

Administrator means the Board of Directors, unless it has delegated power to act on its behalf to the Committee, in which case the Administrator means the Committee.

Affiliate means a corporation which, for purposes of Section 424 of the Code, is a parent or subsidiary of the Company, direct or indirect.

Board of Directors means the Board of Directors of the Company.

Change of Control means a merger or consolidation of the Company whether or not approved by the Board of Directors, other than a merger or consolidation which would result in the voting securities of the Company outstanding immediately prior thereto continuing to represent (either by remaining outstanding or by being converted into voting securities of the surviving entity or the parent of such corporation) at least 50% of the total voting power represented by the voting securities of the Company or such surviving entity or parent of such corporation outstanding immediately after such merger or consolidation, or the stockholders of the Company approve an agreement for the sale or disposition by the Company of all or substantially all of the Company's assets.

Code means the United States Internal Revenue Code of 1986, as amended.

Committee means the committee of the Board of Directors to which the Board of Directors has delegated power to act under or pursuant to the provisions of the Plan.

Common Stock means shares of the Company's common stock, $.0001 par value per share.

Company means Alnylam Holding Co., a Delaware corporation.

Disability or Disabled means permanent and total disability as defined in Section 22(e)(3) of the Code.


Employee means any employee of the Company or of an Affiliate (including, without limitation, an employee who is also serving as an officer or director of the Company or of an Affiliate), designated by the Administrator to be eligible to be granted one or more Stock Rights under the Plan.

Fair Market Value of a Share of Common Stock means:

(1) If the Common Stock is listed on a national securities exchange or traded in the over-the-counter market and sales prices are regularly reported for the Common Stock, the closing or last price of the Common Stock on the Composite Tape or other comparable reporting system for the trading day immediately preceding the applicable date;

(2) If the Common Stock is not traded on a national securities exchange but is traded on the over-the-counter market, if sales prices are not regularly reported for the Common Stock for the trading day referred to in clause (1), and if bid and asked prices for the Common Stock are regularly reported, the mean between the bid and the asked price for the Common Stock at the close of trading in the over-the-counter market for the trading day on which Common Stock was traded immediately preceding the applicable date; and

(3) If the Common Stock is neither listed on a national securities exchange nor traded in the over-the-counter market, such value as the Administrator, in good faith, shall determine.

ISO means an option meant to qualify as an incentive stock option under Section 422 of the Code.

Non-Qualified Option means an option which is not intended to qualify as an ISO.

Option means an ISO or Non-Qualified Option granted under the Plan.

Option Agreement means an agreement between the Company and a Participant delivered pursuant to the Plan, in such form as the Administrator shall approve.

Participant means an Employee, director or consultant of the Company or an Affiliate to whom one or more Stock Rights are granted under the Plan. As used herein, "Participant" shall include "Participant's Survivors" where the context requires.

Plan means this Alnylam Holding Co. 2003 Employee, Director and Consultant Stock Plan.

Shares means shares of the Common Stock as to which Stock Rights have been or may be granted under the Plan or any shares of capital stock into which the Shares are changed or for which they are exchanged within the provisions of Paragraph 3


of the Plan. The Shares issued under the Plan may be authorized and unissued shares or shares held by the Company in its treasury, or both.

Stock Grant means a grant by the Company of Shares under the Plan.

Stock Grant Agreement means an agreement between the Company and a Participant delivered pursuant to the Plan, in such form as the Administrator shall approve.

Stock Right means a right to Shares of the Company granted pursuant to the Plan -- an ISO, a Non-Qualified Option or a Stock Grant.

Survivor means a deceased Participant's legal representatives and/or any person or persons who acquired the Participant's rights to a Stock Right by will or by the laws of descent and distribution.

2. PURPOSES OF THE PLAN.

The Plan is intended to encourage ownership of Shares by Employees and directors of and certain consultants to the Company in order to attract such people, to induce them to work for the benefit of the Company or of an Affiliate and to provide additional incentive for them to promote the success of the Company or of an Affiliate. The Plan provides for the granting of ISOs, Non-Qualified Options and Stock Grants.

3. SHARES SUBJECT TO THE PLAN.

(a) The number of Shares which may be issued from time to time pursuant to this Plan shall be (i) 944,812, plus (ii) such additional Shares as are represented by options and other awards granted under the Company's 2002 Employee, Director and Consultant Stock Plan which are cancelled or expire without delivery of shares of stock by the Company; provided, however, that the number of Shares which may be issued from time to time pursuant to clause (ii) shall not exceed 1,506,503, or the equivalent of such number of Shares after the Administrator, in its sole discretion, has interpreted the effect of any stock split, stock dividend, combination, recapitalization or similar transaction in accordance with Paragraph 23 of the Plan.

If an Option ceases to be "outstanding", in whole or in part, or if the Company shall reacquire any Shares issued pursuant to a Stock Grant, the Shares which were subject to such Option and any Shares so reacquired by the Company shall be available for the granting of other Stock Rights under the Plan. Any Option shall be treated as "outstanding" until such Option is exercised in full, or terminates or expires under the provisions of the Plan, or by agreement of the parties to the pertinent Option Agreement.

4. ADMINISTRATION OF THE PLAN.

The Administrator of the Plan will be the Board of Directors, except to the extent the Board of Directors delegates its authority to the Committee, in which case the Committee shall be the Administrator. Subject to the provisions of the Plan, the Administrator is authorized to:


a. Interpret the provisions of the Plan or of any Option or Stock Grant and to make all rules and determinations which it deems necessary or advisable for the administration of the Plan;

b. Determine which Employees, directors and consultants shall be granted Stock Rights;

c. Determine the number of Shares for which a Stock Right or Stock Rights shall be granted;

d. Specify the terms and conditions upon which a Stock Right or Stock Rights may be granted; and

e. Adopt any sub-plans applicable to residents of any specified jurisdiction as it deems necessary or appropriate in order to comply with or take advantage of any tax laws applicable to the Company or to Plan Participants or to otherwise facilitate the administration of the Plan, which sub-plans may include additional restrictions or conditions applicable to Options or Shares acquired upon exercise of Options.

provided, however, that all such interpretations, rules, determinations, terms and conditions shall be made and prescribed in the context of preserving the tax status under Section 422 of the Code of those Options which are designated as ISOs. Subject to the foregoing, the interpretation and construction by the Administrator of any provisions of the Plan or of any Stock Right granted under it shall be final, unless otherwise determined by the Board of Directors, if the Administrator is the Committee. In addition, if the Administrator is the Committee, the Board of Directors may take any action under the Plan that would otherwise be the responsibility of the Committee.

If permissible under applicable law, the Board of Directors or the Committee may allocate all or any portion of its responsibilities and powers to any one or more of its members and may delegate all or any portion of its responsibilities and powers to any other person selected by it. Any such allocation or delegation may be revoked by the Board of Directors or the Committee at any time.

5. ELIGIBILITY FOR PARTICIPATION.

The Administrator will, in its sole discretion, name the Participants in the Plan, provided, however, that each Participant must be an Employee, director or consultant of the Company or of an Affiliate at the time a Stock Right is granted. Notwithstanding the foregoing, the Administrator may authorize the grant of a Stock Right to a person not then an Employee, director or consultant of the Company or of an Affiliate; provided, however, that the actual grant of such Stock Right shall be conditioned upon such person becoming eligible to become a Participant at or prior to the time of the execution of the Agreement evidencing such Stock Right. ISOs may be granted only to Employees. Non-Qualified Options and Stock Grants may


be granted to any Employee, director or consultant of the Company or an Affiliate. The granting of any Stock Right to any individual shall neither entitle that individual to, nor disqualify him or her from, participation in any other grant of Stock Rights.

6. TERMS AND CONDITIONS OF OPTIONS.

Each Option shall be set forth in writing in an Option Agreement, duly executed by the Company and, to the extent required by law or requested by the Company, by the Participant. The Administrator may provide that Options be granted subject to such terms and conditions, consistent with the terms and conditions specifically required under this Plan, as the Administrator may deem appropriate including, without limitation, subsequent approval by the shareholders of the Company of this Plan or any amendments thereto. The Option Agreements shall be subject to at least the following terms and conditions:

A. Non-Qualified Options: Each Option intended to be a Non-Qualified Option shall be subject to the terms and conditions which the Administrator determines to be appropriate and in the best interest of the Company, subject to the following minimum standards for any such Non-Qualified Option:

a. Option Price: Each Option Agreement shall state the option price (per share) of the Shares covered by each Option, which option price shall be determined by the Administrator but shall not be less than the par value per share of Common Stock.

b. Each Option Agreement shall state the number of Shares to which it pertains;

c. Each Option Agreement shall state the date or dates on which it first is exercisable and the date after which it may no longer be exercised, and may provide that the Option rights accrue or become exercisable in installments over a period of months or years, or upon the occurrence of certain conditions or the attainment of stated goals or events; and

d. Exercise of any Option may be conditioned upon the Participant's execution of a Share purchase agreement in form satisfactory to the Administrator providing for certain protections for the Company and its other shareholders, including requirements that:

i. The Participant's or the Participant's Survivors' right to sell or transfer the Shares may be restricted; and

ii. The Participant or the Participant's Survivors may be required to execute letters of investment intent and must also acknowledge that the Shares will bear legends noting any applicable restrictions.


B. ISOs: Each Option intended to be an ISO shall be issued only to an Employee and be subject to the following terms and conditions, with such additional restrictions or changes as the Administrator determines are appropriate but not in conflict with Section 422 of the Code and relevant regulations and rulings of the Internal Revenue Service:

a. Minimum standards: The ISO shall meet the minimum standards required of Non-Qualified Options, as described in Paragraph 6(A) above, except clause (a) thereunder.

b. Option Price: Immediately before the ISO is granted, if the Participant owns, directly or by reason of the applicable attribution rules in Section 424(d) of the Code:

i. 10% or less of the total combined voting power of all classes of stock of the Company or an Affiliate, the Option price per share of the Shares covered by each ISO shall not be less than 100% of the Fair Market Value per share of the Shares on the date of the grant of the Option; or

ii. More than 10% of the total combined voting power of all classes of stock of the Company or an Affiliate, the Option price per share of the Shares covered by each ISO shall not be less than 110% of the said Fair Market Value on the date of grant.

c. Term of Option: For Participants who own:

i. 10% or less of the total combined voting power of all classes of stock of the Company or an Affiliate, each ISO shall terminate not more than ten years from the date of the grant or at such earlier time as the Option Agreement may provide; or

ii. More than 10% of the total combined voting power of all classes of stock of the Company or an Affiliate, each ISO shall terminate not more than five years from the date of the grant or at such earlier time as the Option Agreement may provide.

d. Limitation on Yearly Exercise: The Option Agreements shall restrict the amount of ISOs which may become exercisable in any calendar year (under this or any other ISO plan of the Company or an Affiliate) so that the aggregate Fair Market Value (determined at the time each ISO is granted) of the stock with respect to which ISOs are exercisable for the first time by the Participant in any calendar year does not exceed $100,000.


7. TERMS AND CONDITIONS OF STOCK GRANTS.

Each offer of a Stock Grant to a Participant shall state the date prior to which the Stock Grant must be accepted by the Participant, and the principal terms of each Stock Grant shall be set forth in a Stock Grant Agreement, duly executed by the Company and, to the extent required by law or requested by the Company, by the Participant. The Stock Grant Agreement shall be in a form approved by the Administrator and shall contain terms and conditions which the Administrator determines to be appropriate and in the best interest of the Company, subject to the following minimum standards:

(a) Each Stock Grant Agreement shall state the purchase price (per share), if any, of the Shares covered by each Stock Grant, which purchase price shall be determined by the Administrator but shall not be less than the minimum consideration required by the Delaware General Corporation Law on the date of the grant of the Stock Grant;

(b) Each Stock Grant Agreement shall state the number of Shares to which the Stock Grant pertains; and

(c) Each Stock Grant Agreement shall include the terms of any right of the Company to restrict or reacquire the Shares subject to the Stock Grant, including the time and events upon which such reacquisition rights shall accrue and the purchase price therefor, if any.

8. EXERCISE OF OPTIONS AND ISSUE OF SHARES.

An Option (or any part or installment thereof) shall be exercised by giving written notice to the Company or its designee, together with provision for payment of the full purchase price in accordance with this Paragraph for the Shares as to which the Option is being exercised, and upon compliance with any other condition(s) set forth in the Option Agreement. Such notice shall be signed by the person exercising the Option, shall state the number of Shares with respect to which the Option is being exercised and shall contain any representation required by the Plan or the Option Agreement. Payment of the purchase price for the Shares as to which such Option is being exercised shall be made (a) in United States dollars in cash or by check, or (b) at the discretion of the Administrator, through delivery of shares of Common Stock having a Fair Market Value equal as of the date of the exercise to the cash exercise price of the Option and held for at least six months, or (c) at the discretion of the Administrator, by delivery of the grantee's personal note, for full, partial or no recourse, bearing interest payable not less than annually at market rate on the date of exercise and at no less than 100% of the applicable Federal rate, as defined in Section 1274(d) of the Code, with or without the pledge of such Shares as collateral, or (d) at the discretion of the Administrator, in accordance with a cashless exercise program established with a securities brokerage firm, and approved by the Administrator, or (e) at the discretion of the Administrator, by any combination of (a), (b), (c) and (d) above. Notwithstanding the foregoing, the Administrator shall accept only such payment on exercise of an ISO as is permitted by Section 422 of the Code.


The Company shall then reasonably promptly deliver the Shares as to which such Option was exercised to the Participant (or to the Participant's Survivors, as the case may be). In determining what constitutes "reasonably promptly," it is expressly understood that the issuance and delivery of the Shares may be delayed by the Company in order to comply with any law or regulation (including, without limitation, state securities or "blue sky" laws) which requires the Company to take any action with respect to the Shares prior to their issuance. The Shares shall, upon delivery, be fully paid, non-assessable Shares.

The Administrator shall have the right to accelerate the date of exercise of any installment of any Option; provided that the Administrator shall not accelerate the exercise date of any installment of any Option granted to an Employee as an ISO (and not previously converted into a Non-Qualified Option pursuant to Paragraph 26) if such acceleration would violate the annual vesting limitation contained in Section 422(d) of the Code, as described in Paragraph 6.B.d.

The Administrator may, in its discretion, amend any term or condition of an outstanding Option provided (i) such term or condition as amended is permitted by the Plan, (ii) any such amendment shall be made only with the consent of the Participant to whom the Option was granted, or in the event of the death of the Participant, the Participant's Survivors, if the amendment is adverse to the Participant, and (iii) any such amendment of any ISO shall be made only after the Administrator determines whether such amendment would constitute a "modification" of any Option which is an ISO (as that term is defined in Section 424(h) of the Code) or would cause any adverse tax consequences for the holder of such ISO.

9. ACCEPTANCE OF STOCK GRANT AND ISSUE OF SHARES.

A Stock Grant (or any part or installment thereof) shall be accepted by executing the Stock Grant Agreement and delivering it to the Company or its designee, together with provision for payment of the full purchase price, if any, in accordance with this Paragraph for the Shares as to which such Stock Grant is being accepted, and upon compliance with any other conditions set forth in the Stock Grant Agreement. Payment of the purchase price for the Shares as to which such Stock Grant is being accepted shall be made (a) in United States dollars in cash or by check, or (b) at the discretion of the Administrator, through delivery of shares of Common Stock held for at least six months and having a Fair Market Value equal as of the date of acceptance of the Stock Grant to the purchase price of the Stock Grant, or (c) at the discretion of the Administrator, by delivery of the grantee's personal note, for full or partial recourse as determined by the Administrator, bearing interest payable not less than annually at no less than 100% of the applicable Federal rate, as defined in
Section 1274(d) of the Code, or (d) at the discretion of the Administrator, by any combination of (a), (b) and (c) above.

The Company shall then reasonably promptly deliver the Shares as to which such Stock Grant was accepted to the Participant (or to the Participant's Survivors, as the case may be), subject to any escrow provision set forth in the Stock Grant Agreement. In determining what constitutes "reasonably promptly," it is expressly understood that the issuance and delivery of the Shares may be delayed by the Company in order to comply with any law or regulation


(including, without limitation, state securities or "blue sky" laws) which requires the Company to take any action with respect to the Shares prior to their issuance.

The Administrator may, in its discretion, amend any term or condition of an outstanding Stock Grant or Stock Grant Agreement provided (i) such term or condition as amended is permitted by the Plan, and (ii) any such amendment shall be made only with the consent of the Participant to whom the Stock Grant was made, if the amendment is adverse to the Participant.

10. RIGHTS AS A SHAREHOLDER.

No Participant to whom a Stock Right has been granted shall have rights as a shareholder with respect to any Shares covered by such Stock Right, except after due exercise of the Option or acceptance of the Stock Grant and tender of the full purchase price, if any, for the Shares being purchased pursuant to such exercise or acceptance and registration of the Shares in the Company's share register in the name of the Participant.

11. ASSIGNABILITY AND TRANSFERABILITY OF STOCK RIGHTS.

By its terms, a Stock Right granted to a Participant shall not be transferable by the Participant other than (i) by will or by the laws of descent and distribution, or (ii) as approved by the Administrator in its discretion and set forth in the applicable Option Agreement or Stock Grant Agreement. Notwithstanding the foregoing, an ISO transferred except in compliance with clause (i) above shall no longer qualify as an ISO. The designation of a beneficiary of a Stock Right by a Participant, with the prior approval of the Administrator and in such form as the Administrator shall prescribe, shall not be deemed a transfer prohibited by this Paragraph. Except as provided above, a Stock Right shall only be exercisable or may only be accepted, during the Participant's lifetime, only by such Participant (or by his or her legal representative) and shall not be assigned, pledged or hypothecated in any way (whether by operation of law or otherwise) and shall not be subject to execution, attachment or similar process. Any attempted transfer, assignment, pledge, hypothecation or other disposition of any Stock Right or of any rights granted thereunder contrary to the provisions of this Plan, or the levy of any attachment or similar process upon a Stock Right, shall be null and void.

12. EFFECT ON OPTIONS OF TERMINATION OF SERVICE OTHER THAN "FOR CAUSE" OR DEATH OR DISABILITY.

Except as otherwise provided in a Participant's Option Agreement, in the event of a termination of service (whether as an employee, director or consultant) with the Company or an Affiliate before the Participant has exercised an Option, the following rules apply:

a. A Participant who ceases to be an employee, director or consultant of the Company or of an Affiliate (for any reason other than termination "for cause", Disability, or death for which events there are special rules in Paragraphs 13, 14,


and 15, respectively), may exercise any Option granted to him or her to the extent that the Option is exercisable on the date of such termination of service, but only within such term as the Administrator has designated in a Participant's Option Agreement.

b. Except as provided in Subparagraph (c) below, or Paragraph 14 or 15, in no event may an Option intended to be an ISO, be exercised later than three months after the Participant's termination of employment.

c. The provisions of this Paragraph, and not the provisions of Paragraph 14 or 15, shall apply to a Participant who subsequently becomes Disabled or dies after the termination of employment, director status or consultancy, provided, however, in the case of a Participant's Disability or death within three months after the termination of employment, director status or consultancy, the Participant or the Participant's Survivors may exercise the Option within one year after the date of the Participant's termination of service, but in no event after the date of expiration of the term of the Option.

d. Notwithstanding anything herein to the contrary, if subsequent to a Participant's termination of employment, termination of director status or termination of consultancy, but prior to the exercise of an Option, the Board of Directors determines that, either prior or subsequent to the Participant's termination, the Participant engaged in conduct which would constitute "cause", then such Participant shall forthwith cease to have any right to exercise any Option.

e. A Participant to whom an Option has been granted under the Plan who is absent from work with the Company or with an Affiliate because of temporary disability (any disability other than a permanent and total Disability as defined in Paragraph 1 hereof), or who is on leave of absence for any purpose, shall not, during the period of any such absence, be deemed, by virtue of such absence alone, to have terminated such Participant's employment, director status or consultancy with the Company or with an Affiliate, except as the Administrator may otherwise expressly provide.

f. Except as required by law or as set forth in a Participant's Option Agreement, Options granted under the Plan shall not be affected by any change of a Participant's status within or among the Company and any Affiliates, so long as the Participant continues to be an employee, director or consultant of the Company or any Affiliate.

13. EFFECT ON OPTIONS OF TERMINATION OF SERVICE "FOR CAUSE".

Except as otherwise provided in a Participant's Option Agreement, the following rules apply if the Participant's service (whether as an employee, director or consultant) with the Company or an Affiliate is terminated "for cause" prior to the time that all his or her outstanding Options have been exercised:


a. All outstanding and unexercised Options as of the time the Participant is notified his or her service is terminated "for cause" will immediately be forfeited.

b. For purposes of this Plan, "cause" shall include (and is not limited to) dishonesty with respect to the Company or any Affiliate, insubordination, substantial malfeasance or non-feasance of duty, unauthorized disclosure of confidential information, breach by the Participant of any provision of any employment, consulting, advisory, nondisclosure, non-competition or similar agreement between the Participant and the Company, and conduct substantially prejudicial to the business of the Company or any Affiliate. The determination of the Administrator as to the existence of "cause" will be conclusive on the Participant and the Company.

c. "Cause" is not limited to events which have occurred prior to a Participant's termination of service, nor is it necessary that the Administrator's finding of "cause" occur prior to termination. If the Administrator determines, subsequent to a Participant's termination of service but prior to the exercise of an Option, that either prior or subsequent to the Participant's termination the Participant engaged in conduct which would constitute "cause", then the right to exercise any Option is forfeited.

d. Any definition in an agreement between the Participant and the Company or an Affiliate, which contains a conflicting definition of "cause" for termination and which is in effect at the time of such termination, shall supersede the definition in this Plan with respect to that Participant.

14. EFFECT ON OPTIONS OF TERMINATION OF SERVICE FOR DISABILITY.

Except as otherwise provided in a Participant's Option Agreement, a Participant who ceases to be an employee, director or consultant of the Company or of an Affiliate by reason of Disability may exercise any Option granted to such Participant:

a. To the extent that the Option has become exercisable but has not been exercised on the date of Disability; and

b. In the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of Disability of any additional vesting rights that would have accrued on the next vesting date had the Participant not become Disabled. The proration shall be based upon the number of days accrued in the current vesting period prior to the date of Disability.

A Disabled Participant may exercise such rights only within the period ending one year after the date of the Participant's termination of employment, directorship or consultancy, as the case may be, notwithstanding that the Participant might have been able to exercise the Option as


to some or all of the Shares on a later date if the Participant had not become Disabled and had continued to be an employee, director or consultant or, if earlier, within the originally prescribed term of the Option.

The Administrator shall make the determination both of whether Disability has occurred and the date of its occurrence (unless a procedure for such determination is set forth in another agreement between the Company and such Participant, in which case such procedure shall be used for such determination). If requested, the Participant shall be examined by a physician selected or approved by the Administrator, the cost of which examination shall be paid for by the Company.

15. EFFECT ON OPTIONS OF DEATH WHILE AN EMPLOYEE, DIRECTOR OR CONSULTANT.

Except as otherwise provided in a Participant's Option Agreement, in the event of the death of a Participant while the Participant is an employee, director or consultant of the Company or of an Affiliate, such Option may be exercised by the Participant's Survivors:

a. To the extent that the Option has become exercisable but has not been exercised on the date of death; and

b. In the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of death of any additional vesting rights that would have accrued on the next vesting date had the Participant not died. The proration shall be based upon the number of days accrued in the current vesting period prior to the Participant's date of death.

If the Participant's Survivors wish to exercise the Option, they must take all necessary steps to exercise the Option within one year after the date of death of such Participant, notwithstanding that the decedent might have been able to exercise the Option as to some or all of the Shares on a later date if he or she had not died and had continued to be an employee, director or consultant or, if earlier, within the originally prescribed term of the Option.

16. EFFECT OF TERMINATION OF SERVICE ON STOCK GRANTS.

In the event of a termination of service (whether as an employee, director or consultant) with the Company or an Affiliate for any reason before the Participant has accepted a Stock Grant, such offer shall terminate.

For purposes of this Paragraph 16 and Paragraph 17 below, a Participant to whom a Stock Grant has been offered and accepted under the Plan who is absent from work with the Company or with an Affiliate because of temporary disability (any disability other than a permanent and total Disability as defined in Paragraph 1 hereof), or who is on leave of absence for any purpose, shall not, during the period of any such absence, be deemed, by virtue of such absence alone, to


have terminated such Participant's employment, director status or consultancy with the Company or with an Affiliate, except as the Administrator may otherwise expressly provide.

In addition, for purposes of this Paragraph 16 and Paragraph 17 below, any change of employment or other service within or among the Company and any Affiliates shall not be treated as a termination of employment, director status or consultancy so long as the Participant continues to be an employee, director or consultant of the Company or any Affiliate.

17. EFFECT ON STOCK GRANTS OF TERMINATION OF SERVICE OTHER THAN "FOR CAUSE" OR DEATH OR DISABILITY.

Except as otherwise provided in a Participant's Stock Grant Agreement, in the event of a termination of service (whether as an employee, director or consultant), other than termination "for cause," Disability, or death for which events there are special rules in Paragraphs 18, 19, and 20, respectively, before all Company rights of repurchase shall have lapsed, then the Company shall have the right to repurchase that number of Shares subject to a Stock Grant as to which the Company's repurchase rights have not lapsed.

18. EFFECT ON STOCK GRANTS OF TERMINATION OF SERVICE "FOR CAUSE".

Except as otherwise provided in a Participant's Stock Grant Agreement, the following rules apply if the Participant's service (whether as an employee, director or consultant) with the Company or an Affiliate is terminated "for cause":

a. All Shares subject to any Stock Grant shall be immediately subject to repurchase by the Company at the purchase price, if any, thereof.

b. For purposes of this Plan, "cause" shall include (and is not limited to) dishonesty with respect to the employer, insubordination, substantial malfeasance or non-feasance of duty, unauthorized disclosure of confidential information, breach by the Participant of any provision of any employment, consulting, advisory, nondisclosure, non-competition or similar agreement between the Participant and the Company, and conduct substantially prejudicial to the business of the Company or any Affiliate. The determination of the Administrator as to the existence of "cause" will be conclusive on the Participant and the Company.

c. "Cause" is not limited to events which have occurred prior to a Participant's termination of service, nor is it necessary that the Administrator's finding of "cause" occur prior to termination. If the Administrator determines, subsequent to a Participant's termination of service, that either prior or subsequent to the Participant's termination the Participant engaged in conduct which would constitute "cause," then the Company's right to repurchase all of such Participant's Shares shall apply.


d. Any definition in an agreement between the Participant and the Company or an Affiliate, which contains a conflicting definition of "cause" for termination and which is in effect at the time of such termination, shall supersede the definition in this Plan with respect to that Participant.

19. EFFECT ON STOCK GRANTS OF TERMINATION OF SERVICE FOR DISABILITY.

Except as otherwise provided in a Participant's Stock Grant Agreement, the following rules apply if a Participant ceases to be an employee, director or consultant of the Company or of an Affiliate by reason of Disability: to the extent the Company's rights of repurchase have not lapsed on the date of Disability, they shall be exercisable; provided, however, that in the event such rights of repurchase lapse periodically, such rights shall lapse to the extent of a pro rata portion of the Shares subject to such Stock Grant through the date of Disability as would have lapsed had the Participant not become Disabled. The proration shall be based upon the number of days accrued prior to the date of Disability.

The Administrator shall make the determination both of whether Disability has occurred and the date of its occurrence (unless a procedure for such determination is set forth in another agreement between the Company and such Participant, in which case such procedure shall be used for such determination). If requested, the Participant shall be examined by a physician selected or approved by the Administrator, the cost of which examination shall be paid for by the Company.

20. EFFECT ON STOCK GRANTS OF DEATH WHILE AN EMPLOYEE, DIRECTOR OR CONSULTANT.

Except as otherwise provided in a Participant's Stock Grant Agreement, the following rules apply in the event of the death of a Participant while the Participant is an employee, director or consultant of the Company or of an Affiliate: to the extent the Company's rights of repurchase have not lapsed on the date of death, they shall be exercisable; provided, however, that in the event such rights of repurchase lapse periodically, such rights shall lapse to the extent of a pro rata portion of the Shares subject to such Stock Grant through the date of death as would have lapsed had the Participant not died. The proration shall be based upon the number of days accrued prior to the Participant's death.

21. PURCHASE FOR INVESTMENT.

Unless the offering and sale of the Shares to be issued upon the particular exercise or acceptance of a Stock Right shall have been effectively registered under the Securities Act of 1933, as now in force or hereafter amended (the "1933 Act"), the Company shall be under no obligation to issue the Shares covered by such exercise unless and until the following conditions have been fulfilled:


a. The person(s) who exercise(s) or accept(s) such Stock Right shall warrant to the Company, prior to the receipt of such Shares, that such person(s) are acquiring such Shares for their own respective accounts, for investment, and not with a view to, or for sale in connection with, the distribution of any such Shares, in which event the person(s) acquiring such Shares shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing their Shares issued pursuant to such exercise or such grant:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is then available, and (2) there shall have been compliance with all applicable state securities laws."

b. At the discretion of the Administrator, the Company shall have received an opinion of its counsel that the Shares may be issued upon such particular exercise or acceptance in compliance with the 1933 Act without registration thereunder.

22. DISSOLUTION OR LIQUIDATION OF THE COMPANY.

Upon the dissolution or liquidation of the Company, all Options granted under this Plan which as of such date shall not have been exercised and all Stock Grants which have not been accepted will terminate and become null and void; provided, however, that if the rights of a Participant or a Participant's Survivors have not otherwise terminated and expired, the Participant or the Participant's Survivors will have the right immediately prior to such dissolution or liquidation to exercise or accept any Stock Right to the extent that the Stock Right is exercisable or subject to acceptance as of the date immediately prior to such dissolution or liquidation.

23. ADJUSTMENTS.

Upon the occurrence of any of the following events, a Participant's rights with respect to any Stock Right granted to him or her hereunder shall be adjusted as hereinafter provided, unless otherwise specifically provided in a Participant's Option Agreement or Stock Grant Agreement:

A. Stock Dividends and Stock Splits. If (i) the shares of Common Stock shall be subdivided or combined into a greater or smaller number of shares or if the Company shall issue any shares of Common Stock as a stock dividend on its outstanding Common Stock, or (ii) additional shares or new or different shares or other securities of the Company or other non-


cash assets are distributed with respect to such shares of Common Stock, the number of shares of Common Stock deliverable upon the exercise or acceptance of such Stock Right may be appropriately increased or decreased proportionately, and appropriate adjustments may be made including, in the purchase price per share, to reflect such events.

B. Corporate Transactions. If the Company is to be consolidated with or acquired by another entity in a merger, sale of all or substantially all of the Company's assets other than a transaction to merely change the state of incorporation (a "Corporate Transaction"), the Administrator or the board of directors of any entity assuming the obligations of the Company hereunder (the "Successor Board"), shall, as to outstanding Options, either (i) make appropriate provision for the continuation of such Options by substituting on an equitable basis for the Shares then subject to such Options either the consideration payable with respect to the outstanding shares of Common Stock in connection with the Corporate Transaction or securities of any successor or acquiring entity (provided, that, at the discretion of the Administrator, all unvested Options shall be made fully or partially exercisable for purposes of this Subparagraph upon the closing of the Corporate Transaction); or (ii) upon written notice to the Participants, provide that all Options must be exercised (either to the extent then exercisable or, at the discretion of the Administrator, all Options being made fully or partially exercisable for purposes of this Subparagraph), within a specified number of days of the date of such notice, at the end of which period the Options shall terminate; or (iii) terminate all Options in exchange for a cash payment equal to the excess of the Fair Market Value of the Shares subject to such Options (either to the extent then exercisable or, at the discretion of the Administrator, all Options being made fully or partially exercisable for purposes of this Subparagraph) over the exercise price thereof.

With respect to outstanding Stock Grants, the Administrator or the Successor Board, shall either (i) make appropriate provisions for the continuation of such Stock Grants by substituting on an equitable basis for the Shares then subject to such Stock Grants either the consideration payable with respect to the outstanding Shares of Common Stock in connection with the Corporate Transaction or securities of any successor or acquiring entity; or
(ii) upon written notice to the Participants, provide that all Stock Grants must be accepted (to the extent then subject to acceptance) within a specified number of days of the date of such notice, at the end of which period the offer of the Stock Grants shall terminate; or (iii) terminate all Stock Grants in exchange for a cash payment equal to the excess of the Fair Market Value of the Shares subject to such Stock Grants over the purchase price thereof, if any. In addition, in the event of a Corporate Transaction, the Administrator may waive any or all Company repurchase rights with respect to outstanding Stock Grants.

Notwithstanding the foregoing, individual Option Agreements and Stock Grant Agreements may provide for different adjustments than those set forth herein.

C. Recapitalization or Reorganization. In the event of a recapitalization or reorganization of the Company other than a Corporate Transaction pursuant to which securities of the Company or of another corporation are issued with respect to the outstanding shares of Common Stock, a Participant upon exercising or accepting a Stock Right after the recapitalization or reorganization shall be entitled to receive for the purchase price paid upon


such exercise or acceptance the number of replacement securities which would have been received if such Stock Right had been exercised or accepted prior to such recapitalization or reorganization.

D. Modification of ISOs. Notwithstanding the foregoing, any adjustments made pursuant to Subparagraph A, B or C above with respect to ISOs shall be made only after the Administrator determines whether such adjustments would constitute a "modification" of such ISOs (as that term is defined in
Section 424(h) of the Code) or would cause any adverse tax consequences for the holders of such ISOs. If the Administrator determines that such adjustments made with respect to ISOs would constitute a modification of such ISOs, it may refrain from making such adjustments, unless the holder of an ISO specifically requests in writing that such adjustment be made and such writing indicates that the holder has full knowledge of the consequences of such "modification" on his or her income tax treatment with respect to the ISO.

24. ISSUANCES OF SECURITIES.

Except as expressly provided herein, no issuance by the Company of shares of stock of any class, or securities convertible into shares of stock of any class, shall affect, and no adjustment by reason thereof shall be made with respect to, the number or price of shares subject to Stock Rights. Except as expressly provided herein, no adjustments shall be made for dividends paid in cash or in property (including without limitation, securities) of the Company prior to any issuance of Shares pursuant to a Stock Right.

25. FRACTIONAL SHARES.

No fractional shares shall be issued under the Plan and the person exercising a Stock Right shall receive from the Company cash in lieu of such fractional shares equal to the Fair Market Value thereof.

26. CONVERSION OF ISOs INTO NON-QUALIFIED OPTIONS; TERMINATION OF ISOs.

The Administrator, at the written request of any Participant, may in its discretion take such actions as may be necessary to convert such Participant's ISOs (or any portions thereof) that have not been exercised on the date of conversion into Non-Qualified Options at any time prior to the expiration of such ISOs, regardless of whether the Participant is an employee of the Company or an Affiliate at the time of such conversion. At the time of such conversion, the Administrator (with the consent of the Participant) may impose such conditions on the exercise of the resulting Non-Qualified Options as the Administrator in its discretion may determine, provided that such conditions shall not be inconsistent with this Plan. Nothing in the Plan shall be deemed to give any Participant the right to have such Participant's ISOs converted into Non-Qualified Options, and no such conversion shall occur until and unless the Administrator


takes appropriate action. The Administrator, with the consent of the Participant, may also terminate any portion of any ISO that has not been exercised at the time of such conversion.

27. WITHHOLDING.

In the event that any federal, state, or local income taxes, employment taxes, Federal Insurance Contributions Act ("F.I.C.A.") withholdings or other amounts are required by applicable law or governmental regulation to be withheld from the Participant's salary, wages or other remuneration in connection with the exercise or acceptance of a Stock Right or in connection with a Disqualifying Disposition (as defined in Paragraph 28) or upon the lapsing of any right of repurchase, the Company may withhold from the Participant's compensation, if any, or may require that the Participant advance in cash to the Company, or to any Affiliate of the Company which employs or employed the Participant, the statutory minimum amount of such withholdings unless a different withholding arrangement, including the use of shares of the Company's Common Stock or a promissory note, is authorized by the Administrator (and permitted by law). For purposes hereof, the fair market value of the shares withheld for purposes of payroll withholding shall be determined in the manner provided in Paragraph 1 above, as of the most recent practicable date prior to the date of exercise. If the fair market value of the shares withheld is less than the amount of payroll withholdings required, the Participant may be required to advance the difference in cash to the Company or the Affiliate employer. The Administrator in its discretion may condition the exercise of an Option for less than the then Fair Market Value on the Participant's payment of such additional withholding.

28. NOTICE TO COMPANY OF DISQUALIFYING DISPOSITION.

Each Employee who receives an ISO must agree to notify the Company in writing immediately after the Employee makes a Disqualifying Disposition of any shares acquired pursuant to the exercise of an ISO. A Disqualifying Disposition is defined in Section 424(c) of the Code and includes any disposition (including any sale or gift) of such shares before the later of (a) two years after the date the Employee was granted the ISO, or (b) one year after the date the Employee acquired Shares by exercising the ISO, except as otherwise provided in
Section 424(c) of the Code. If the Employee has died before such stock is sold, these holding period requirements do not apply and no Disqualifying Disposition can occur thereafter.

29. TERMINATION OF THE PLAN.

The Plan will terminate on 10 years after adoption, the date which is ten years from the earlier of the date of its adoption by the Board of Directors and the date of its approval by the shareholders. The Plan may be terminated at an earlier date by vote of the shareholders or the Board of Directors of the Company; provided, however, that any such earlier termination shall not affect any Option Agreements or Stock Grant Agreements executed prior to the effective date of such termination.


30. AMENDMENT OF THE PLAN AND AGREEMENTS.

The Plan may be amended by the shareholders of the Company. The Plan may also be amended by the Administrator, including, without limitation, to the extent necessary to qualify any or all outstanding Stock Rights granted under the Plan or Stock Rights to be granted under the Plan for favorable federal income tax treatment (including deferral of taxation upon exercise) as may be afforded incentive stock options under Section 422 of the Code, and to the extent necessary to qualify the shares issuable upon exercise or acceptance of any outstanding Stock Rights granted, or Stock Rights to be granted, under the Plan for listing on any national securities exchange or quotation in any national automated quotation system of securities dealers. Any amendment approved by the Administrator which the Administrator determines is of a scope that requires shareholder approval shall be subject to obtaining such shareholder approval. Any modification or amendment of the Plan shall not, without the consent of a Participant, adversely affect his or her rights under a Stock Right previously granted to him or her. With the consent of the Participant affected, the Administrator may amend outstanding Option Agreements and Stock Grant Agreements in a manner which may be adverse to the Participant but which is not inconsistent with the Plan. In the discretion of the Administrator, outstanding Option Agreements and Stock Grant Agreements may be amended by the Administrator in a manner which is not adverse to the Participant.


31. EMPLOYMENT OR OTHER RELATIONSHIP.

Nothing in this Plan or any Option Agreement or Stock Grant Agreement shall be deemed to prevent the Company or an Affiliate from terminating the employment, consultancy or director status of a Participant, nor to prevent a Participant from terminating his or her own employment, consultancy or director status or to give any Participant a right to be retained in employment or other service by the Company or any Affiliate for any period of time.

32. GOVERNING LAW.

This Plan shall be construed and enforced in accordance with the law of the State of Delaware.

As amended through April 26, 2004


INCENTIVE STOCK OPTION AGREEMENT

ALNYLAM HOLDING CO.

AGREEMENT made as of the ___ day of _______ 200_, between Alnylam Holding Co. (the "Company"), a Delaware corporation having a principal place of business in Cambridge, Massachusetts, and ____________ of ____________, an employee of an Affiliate of the Company (the "Employee").

WHEREAS, the Company desires to grant to the Employee an Option to purchase shares of its common stock, $.0001 par value per share (the "Shares"), under and for the purposes set forth in the Company's 2003 Employee, Director and Consultant Stock Plan (the "Plan");

WHEREAS, the Company and the Employee understand and agree that any terms used and not defined herein have the same meanings as in the Plan; and

WHEREAS, the Company and the Employee each intend that the Option granted herein qualify as an ISO.

NOW, THEREFORE, in consideration of the mutual covenants hereinafter set forth and for other good and valuable consideration, the parties hereto agree as follows:

1. GRANT OF OPTION.

The Company hereby grants to the Employee the right and option to purchase all or any part of an aggregate of ________________ Shares (the "Total Shares"), on the terms and conditions and subject to all the limitations set forth herein, under United States securities and tax laws, and in the Plan, which is incorporated herein by reference. The Employee acknowledges receipt of a copy of the Plan.

2. PURCHASE PRICE.

The purchase price of the Shares covered by the Option shall be $____ per Share, subject to adjustment, as provided in the Plan, in the event of a stock split, reverse stock split or other events affecting the holders of Shares after the date hereof (the "Purchase Price"). Payment shall be made in accordance with Paragraph 8 of the Plan.

3. EXERCISABILITY OF OPTION.

Subject to the terms and conditions set forth in this Agreement and the Plan, the Option granted hereby shall become exercisable for up to _________ of the Shares on the last day of _________ (the "First Anniversary Date")and for an additional _________ of the Shares on the last day of each _____, _____, _____ and _____


of each year after the first anniversary of this Agreement until 100% of the Shares have become vested.

Alternatively, at the election of the Employee, the Option may be exercised in whole or in part at any time as to Shares which have not yet vested in accordance with the above schedule; provided however, as a condition to exercising the Option for such unvested Shares, the Employee shall execute a Restricted Stock Agreement in the form attached hereto as Exhibit C.

The foregoing rights are cumulative and are subject to the other terms and conditions of this Agreement and the Plan.

4. TERM OF OPTION.

The Option shall terminate ten years from the date of this Agreement or, if the Employee owns as of the date hereof more than 10% of the total combined voting power of all classes of capital stock of the Company or an Affiliate, five years from the date of this Agreement, but shall be subject to earlier termination as provided herein or in the Plan.

If the Employee ceases to be an employee of the Company or of an Affiliate (for any reason other than the death or Disability of the Employee or termination of the Employee's employment for "cause" (as defined in the Plan), the Option may be exercised, if it has not previously terminated, within three months after the date the Employee ceases to be an employee of the Company or an Affiliate, or within the originally prescribed term of the Option, whichever is earlier, but may not be exercised thereafter. In such event, the Option shall be exercisable only to the extent that the Option has become exercisable and is in effect at the date of such cessation of employment.

Notwithstanding the foregoing, in the event of the Employee's Disability or death within three months after the termination of employment, the Employee or the Employee's Survivors may exercise the Option within one year after the date of the Employee's termination of employment, but in no event after the date of expiration of the term of the Option.

In the event the Employee's employment is terminated by the Employee's employer for "cause" (as defined in the Plan), the Employee's right to exercise any unexercised portion of this Option shall cease immediately as of the time the Employee is notified his or her employment is terminated for "cause," and this Option shall thereupon terminate. Notwithstanding anything herein to the contrary, if subsequent to the Employee's termination as an employee, but prior to the exercise of the Option, the Board of Directors of the Company determines that, either prior or subsequent to the Employee's termination, the Employee engaged in conduct which would constitute "cause," then the Employee shall immediately cease to have any right to exercise the Option and this Option shall thereupon terminate.

In the event of the Disability of the Employee, as determined in accordance with the Plan, the Option shall be exercisable within one year after the Employee's termination of employment or, if earlier, within the term originally prescribed by the Option. In such event, the Option shall be exercisable:

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(a) to the extent that the Option has become exercisable but has not been exercised as of the date of Disability; and

(b) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of Disability of any additional vesting rights that would have accrued on the next vesting date had the Employee not become Disabled. The proration shall be based upon the number of days accrued in the current vesting period prior to the date of Disability.

In the event of the death of the Employee while an employee of the Company or of an Affiliate, the Option shall be exercisable by the Employee's Survivors within one year after the date of death of the Employee or, if earlier, within the originally prescribed term of the Option. In such event, the Option shall be exercisable:

(x) to the extent that the Option has become exercisable but has not been exercised as of the date of death; and

(y) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of death of any additional vesting rights that would have accrued on the next vesting date had the Employee not died. The proration shall be based upon the number of days accrued in the current vesting period prior to the Employee's date of death.

5. METHOD OF EXERCISING OPTION.

Subject to the terms and conditions of this Agreement, the Option may be exercised by written notice to the Company or its designee, in substantially the form of Exhibit A attached hereto. Such notice shall state the number of Shares with respect to which the Option is being exercised and shall be signed by the person exercising the Option. Payment of the purchase price for such Shares shall be made in accordance with Paragraph 8 of the Plan. The Company shall deliver a certificate or certificates representing such Shares as soon as practicable after the notice shall be received, provided, however, that the Company may delay issuance of such Shares until completion of any action or obtaining of any consent, which the Company deems necessary under any applicable law (including, without limitation, state securities or "blue sky" laws). The certificate or certificates for the Shares as to which the Option shall have been so exercised shall be registered in the Company's share register in the name of the person so exercising the Option (or, if the Option shall be exercised by the Employee and if the Employee shall so request in the notice exercising the Option, shall be registered in the name of the Employee and another person jointly, with right of survivorship) and shall be delivered as provided above to or upon the written order of the person exercising the Option. In the event the Option shall be exercised, pursuant to Section 4 hereof, by any person other than the Employee, such notice shall be accompanied by appropriate proof of the right of such person to exercise the Option. All Shares that shall be purchased upon the exercise of the Option as provided herein shall be fully paid and nonassessable.

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6. PARTIAL EXERCISE.

Exercise of this Option to the extent above stated may be made in part at any time and from time to time within the above limits, except that no fractional share shall be issued pursuant to this Option.

7. NON-ASSIGNABILITY.

The Option shall not be transferable by the Employee otherwise than by will or by the laws of descent and distribution. The Option shall be exercisable, during the Employee's lifetime, only by the Employee (or, in the event of legal incapacity or incompetency, by the Employee's guardian or representative) and shall not be assigned, pledged or hypothecated in any way (whether by operation of law or otherwise) and shall not be subject to execution, attachment or similar process. Any attempted transfer, assignment, pledge, hypothecation or other disposition of the Option or of any rights granted hereunder contrary to the provisions of this Section 7, or the levy of any attachment or similar process upon the Option shall be null and void.

8. NO RIGHTS AS STOCKHOLDER UNTIL EXERCISE.

The Employee shall have no rights as a stockholder with respect to Shares subject to this Agreement until registration of the Shares in the Company's share register in the name of the Employee. Except as is expressly provided in the Plan with respect to certain changes in the capitalization of the Company, no adjustment shall be made for dividends or similar rights for which the record date is prior to the date of such registration.

9. ADJUSTMENTS.

The Plan contains provisions covering the treatment of Options in a number of contingencies such as stock splits and mergers. Provisions in the Plan for adjustment with respect to stock subject to Options and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference, provided, however, in the event of a Change of Control (as defined in the Plan) which the Administrator (as defined in the Plan) or the Successor Board (as defined in the Plan) makes provisions for the treatment of Options under (A) clause (i) of the first paragraph of Section 23(B) of the Plan, an additional one-sixteenth (1/16) of the Shares shall become fully vested and immediately exercisable immediately prior to such Change of Control and the remaining Shares which have not vested shall vest in accordance with Section 3 above, provided, however, if the Employee's employment with the Company is Terminated (as defined below), fifty percent (50%) of the Shares which have not yet vested in accordance with Section 3 above shall become fully vested and immediately exercisable immediately prior to such termination (for purposes of this Section 9, the Employee shall be deemed to have been "Terminated" if at any time before the six-month anniversary of the closing of such Change of Control, (i) the Employee shall fail to be vested with power and authority analogous to the Employee's title and/or office prior to such Change of Control, (ii) the Employee shall lose any significant duties or responsibilities attending such office, (iii) there shall occur a reduction in the Employee's base compensation, or

4

(iv) the Employee's employment with the Company or an Affiliate, or its successor, is terminated without "cause" (as defined in the Plan)) or (B) either clause (ii) or (iii) of the first paragraph of Section 23(B) of the Plan, all Shares under this Option shall become fully vested and immediately exercisable prior to such Change of Control.

10. TAXES.

The Employee acknowledges that any income or other taxes due from him or her with respect to this Option or the Shares issuable pursuant to this Option shall be the Employee's responsibility.

In the event of a Disqualifying Disposition (as defined in Section 15 below) or if the Option is converted into a Non-Qualified Option and such Non-Qualified Option is exercised, the Company may withhold from the Employee's remuneration, if any, the minimum statutory amount of federal, state and local withholding taxes attributable to such amount that is considered compensation includable in such person's gross income. At the Company's discretion, the amount required to be withheld may be withheld in cash from such remuneration, or in kind from the Shares otherwise deliverable to the Employee on exercise of the Option. The Employee further agrees that, if the Company does not withhold an amount from the Employee's remuneration sufficient to satisfy the Company's income tax withholding obligation, the Employee will reimburse the Company on demand, in cash, for the amount under-withheld.

11. PURCHASE FOR INVESTMENT.

Unless the offering and sale of the Shares to be issued upon the particular exercise of the Option shall have been effectively registered under the Securities Act of 1933, as now in force or hereafter amended (the "1933 Act"), the Company shall be under no obligation to issue the Shares covered by such exercise unless and until the following conditions have been fulfilled:

(a) The person(s) who exercise the Option shall warrant to the Company, at the time of such exercise, that such person(s) are acquiring such Shares for their own respective accounts, for investment, and not with a view to, or for sale in connection with, the distribution of any such Shares, in which event the person(s) acquiring such Shares shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing the Shares issued pursuant to such exercise:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is then available, and (2) there shall have been compliance with all applicable state securities laws;" and

5

(b) If the Company so requires, the Company shall have received an opinion of its counsel that the Shares may be issued upon such particular exercise in compliance with the 1933 Act without registration thereunder. Without limiting the generality of the foregoing, the Company may delay issuance of the Shares until completion of any action or obtaining of any consent, which the Company deems necessary under any applicable law (including without limitation state securities or "blue sky" laws).

12. RESTRICTIONS ON TRANSFER OF SHARES.

12.1 The Shares acquired by the Employee pursuant to the exercise of the Option granted hereby shall not be transferred by the Employee except as permitted herein.

12.2 In the event of the Employee's termination of employment for any reason, the Company shall have the option, but not the obligation, to repurchase all or any part of the Shares issued pursuant to this Agreement (including, without limitation, Shares purchased after termination of employment, Disability or death in accordance with Section 4 hereof). In the event the Company does not, upon the termination of employment of the Employee (as described above), exercise its option pursuant to this Section 12.2, the restrictions set forth in the balance of this Agreement shall not thereby lapse, and the Employee for himself or herself, his or her heirs, legatees, executors, administrators and other successors in interest, agrees that the Shares shall remain subject to such restrictions. The following provisions shall apply to a repurchase under this Section 12.2:

(i) The per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Fair Market Value of each such Share determined in accordance with the Plan as of the date of termination of employment provided, however, in the event of a termination by the Company for "cause" (as defined in the Plan), the per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Purchase Price.

(ii) The Company's option to repurchase the Employee's Shares in the event of termination of employment shall be valid for a period of 12 months commencing with the date of such termination of employment.

(iii) In the event the Company shall be entitled to and shall elect to exercise its option to repurchase the Employee's Shares under this
Section 12.2, the Company shall notify the Employee, or in case of death, his or her Survivor, in writing of its intent to repurchase the Shares. Such written notice may be mailed by the Company up to and including the last day of the time period provided for in
Section 12.2(ii) for exercise of the Company's option to repurchase.

(iv) The written notice to the Employee shall specify the address at, and the time and date on, which payment of the repurchase price is to be made (the "Closing"). The date specified shall not be less than ten days nor more than 60 days from the

6

date of the mailing of the notice, and the Employee or his or her successor in interest with respect to the Shares shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Employee or his or her successor in interest and the Shares being purchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Employee or his or her successor in interest.

12.3 It shall be a condition precedent to the validity of any sale or other transfer of any Shares by the Employee that the following restrictions be complied with (except as hereinafter otherwise provided):

(i) No Shares owned by the Employee may be sold, pledged or otherwise transferred (including by gift or devise) to any person or entity, voluntarily, or by operation of law, except in accordance with the terms and conditions hereinafter set forth.

(ii) Before selling or otherwise transferring all or part of the Shares, the Employee shall give written notice of such intention to the Company, which notice shall include the name of the proposed transferee, the proposed purchase price per share, the terms of payment of such purchase price and all other matters relating to such sale or transfer and shall be accompanied by a copy of the binding written agreement of the proposed transferee to purchase the Shares of the Employee. Such notice shall constitute a binding offer by the Employee to sell to the Company such number of the Shares then held by the Employee as are proposed to be sold in the notice at the monetary price per share designated in such notice, payable on the terms offered to the Employee by the proposed transferee (provided, however, that the Company shall not be required to meet any non-monetary terms of the proposed transfer, including, without limitation, delivery of other securities in exchange for the Shares proposed to be sold). The Company shall give written notice to the Employee as to whether such offer has been accepted in whole by the Company within 60 days after its receipt of written notice from the Employee. The Company may only accept such offer in whole and may not accept such offer in part. Such acceptance notice shall fix a time, location and date for the closing on such purchase ("Closing Date") which shall not be less than ten nor more than 60 days after the giving of the acceptance notice. The place for such closing shall be at the Company's principal office. At such closing, the Employee shall accept payment as set forth herein and shall deliver to the Company in exchange therefor certificates for the number of Shares stated in the notice accompanied by duly executed instruments of transfer.

(iii) If the Company shall fail to accept any such offer, the Employee shall be free to sell all, but not less than all, of the Shares set forth in his or her notice to the designated transferee at the price and terms designated in the Employee's notice, provided that (i) such sale is consummated within six months after the giving of notice by the Employee to the Company as aforesaid, and (ii) the transferee first agrees in writing to be bound by the provisions of this Section 12 so that such

7

transferee (and all subsequent transferees) shall thereafter only be permitted to sell or transfer the Shares in accordance with the terms hereof. After the expiration of such six months, the provisions of this Section 12.3 shall again apply with respect to any proposed voluntary transfer of the Employee's Shares.

(iv) The restrictions on transfer contained in this Section 12.3 shall not apply to (a) transfers by the Employee to his or her spouse or children or to a trust for the benefit of his or her spouse or children, (b) transfers by the Employee to his or her guardian or conservator, and (c) or transfers by the Employee, in the event of his or her death, to his or her executor(s) or administrator(s) or to trustee(s) under his or her will (collectively, "Permitted Transferees"); provided however, that in any such event the Shares so transferred in the hands of each such Permitted Transferee shall remain subject to this Agreement, and each such Permitted Transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer.

(v) The provisions of this Section 12.3 may be waived by the Company. Any such waiver may be unconditional or based upon such conditions as the Company may impose.

12.4 In the event that the Employee or his or her successor in interest fails to deliver the Shares to be repurchased by the Company under this Agreement, the Company may elect (a) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Employee or his or her successor in interest upon delivery of such Shares, and (b) immediately to take such action as is appropriate to transfer record title of such Shares from the Employee to the Company and to treat the Employee and such Shares in all respects as if delivery of such Shares had been made as required by this Agreement. The Employee hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

12.5 If the Company shall pay a stock dividend or declare a stock split on or with respect to any of its Common Stock, or otherwise distribute securities of the Company to the holders of its Common Stock, the number of shares of stock or other securities of Company issued with respect to the shares then subject to the restrictions contained in this Agreement shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement. If the Company shall distribute to its stockholders shares of stock of another corporation, the shares of stock of such other corporation, distributed with respect to the Shares then subject to the restrictions contained in this Agreement, shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement.

12.6 If the outstanding shares of Common Stock of the Company shall be subdivided into a greater number of shares or combined into a smaller number of shares, or in the event of a reclassification of the outstanding shares of Common Stock of the Company, or if the Company shall be a party to a merger, consolidation or capital reorganization, there shall be substituted for the Shares then subject to the restrictions contained in this Agreement such amount and kind of securities as are issued in such subdivision, combination, reclassification, merger, consolidation

8

or capital reorganization in respect of the Shares subject immediately prior thereto to the Company's rights to repurchase pursuant to this Agreement.

12.7 The Company shall not be required to transfer any Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Agreement, or to treat as owner of such Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Shares shall have been so sold, assigned or otherwise transferred, in violation of this Agreement.

12.8 The provisions of Sections 12.1, 12.2 and 12.3 shall terminate upon the consummation of a public offering of any of the Company's securities pursuant to a registration statement filed with the Securities and Exchange Commission pursuant to the 1933 Act.

12.9 If, in connection with a registration statement filed by the Company pursuant to the 1933 Act, the Company or its underwriter so requests, the Employee will agree not to sell any Shares for a period not to exceed 180 days following the effectiveness of such registration.

12.10 The Employee acknowledges and agrees that neither the Company, its shareholders nor its directors and officers, has any duty or obligation to disclose to the Employee any material information regarding the business of the Company or affecting the value of the Shares before, at the time of, or following a termination of the employment of the Employee by the Company, or an Affiliate, including, without limitation, any information concerning plans for the Company to make a public offering of its securities or to be acquired by or merged with or into another firm or entity.

12.11 All certificates representing the Shares to be issued to the Employee pursuant to this Agreement shall have endorsed thereon a legend substantially as follows: "The shares represented by this certificate are subject to restrictions set forth in an Incentive Stock Option Agreement dated _________, 200__ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

13. NO OBLIGATION TO EMPLOY.

The Company is not by the Plan or this Option obligated to continue the Employee as an employee of the Company or an Affiliate. The Employee acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Option is a one-time benefit which does not create any contractual or other right to receive future grants of options, or benefits in lieu of options; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when options shall be granted, the number of shares subject to each option, the option price, and the time or times when each option shall be exercisable, will be at the sole discretion of the Company; (iv) that the Employee's participation in the Plan is voluntary; (v) that the value of the Option is an extraordinary item of compensation which is outside the scope of the Employee's employment contract, if any; and (vi) that the Option is not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

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14. OPTION IS INTENDED TO BE AN ISO.

The parties each intend that the Option be an ISO so that the Employee (or the Employee's Survivors) may qualify for the favorable tax treatment provided to holders of Options that meet the standards of Section 422 of the Code. Any provision of this Agreement or the Plan which conflicts with the Code so that this Option would not be deemed an ISO is null and void and any ambiguities shall be resolved so that the Option qualifies as an ISO. Nonetheless, if the Option is determined not to be an ISO, the Employee understands that neither the Company nor any Affiliate is responsible to compensate him or her or otherwise make up for the treatment of the Option as a Non-qualified Option and not as an ISO. The Employee should consult with the Employee's own tax advisors regarding the tax effects of the Option and the requirements necessary to obtain favorable tax treatment under Section 422 of the Code, including, but not limited to, holding period requirements.

15. NOTICE TO COMPANY OF DISQUALIFYING DISPOSITION.

The Employee agrees to notify the Company in writing immediately after the Employee makes a Disqualifying Disposition of any of the Shares acquired pursuant to the exercise of the Option. A Disqualifying Disposition is defined in Section 424(c) of the Code and includes any disposition (including any sale) of such Shares before the later of (a) two years after the date the Employee was granted the Option or (b) one year after the date the Employee acquired Shares by exercising the Option, except as otherwise provided in Section 424(c) of the Code. If the Employee has died before the Shares are sold, these holding period requirements do not apply and no Disqualifying Disposition can occur thereafter.

16. NOTICES.

Any notices required or permitted by the terms of this Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Holding Co.



If to the Employee:


or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given upon the earlier of receipt, one

10

business day following delivery to a recognized courier service or three business days following mailing by registered or certified mail.

17. GOVERNING LAW.

This Agreement shall be construed and enforced in accordance with the law of the State of Delaware, without giving effect to the conflict of law principles thereof. . For the purpose of litigating any dispute that arises under this Agreement, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

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18. BENEFIT OF AGREEMENT.

Subject to the provisions of the Plan and the other provisions hereof, this Agreement shall be for the benefit of and shall be binding upon the heirs, executors, administrators, successors and assigns of the parties hereto.

19. ENTIRE AGREEMENT.

This Agreement, together with the Plan, embodies the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement shall affect or be used to interpret, change or restrict, the express terms and provisions of this Agreement, provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

20. MODIFICATIONS AND AMENDMENTS.

The terms and provisions of this Agreement may be modified or amended as provided in the Plan.

21. WAIVERS AND CONSENTS.

Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

22. DATA PRIVACY.

By entering into this Agreement, the Employee: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan recordkeeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of options and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

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23. CONSENT OF SPOUSE.

If the Employee is married as of the date of this Agreement, the Employee's spouse shall execute a Consent of Spouse in the form of Exhibit B hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Employee marries or remarries subsequent to the date hereof, the Employee shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of Section 12.2 of this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Exhibit B.

[REMAINDER OF PAGE INTENTIONALLY LEFT BLANK]

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IN WITNESS WHEREOF, the Company has caused this Agreement to be executed by its duly authorized officer, and the Employee has hereunto set his or her hand, all as of the day and year first above written.

ALNYLAM HOLDING CO.

By:_____________________________________________
Name
Title
Employee

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Exhibit A

NOTICE OF EXERCISE OF INCENTIVE STOCK OPTION

[FORM FOR UNREGISTERED SHARES]

To: Alnylam Holding Co.

Ladies and Gentlemen:

I hereby exercise my Incentive Stock Option to purchase ___________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Holding Co. (the "Company"), at the exercise price of $____ per share, pursuant to and subject to the terms of that certain Incentive Stock Option Agreement between the undersigned and the Company dated _________, 200_.

I am aware that the Shares have not been registered under the Securities Act of 1933, as amended (the "1933 Act"), or any state securities laws. I understand that the reliance by the Company on exemptions under the 1933 Act is predicated in part upon the truth and accuracy of the statements by me in this Notice of Exercise.

I hereby represent and warrant that (1) I have been furnished with all information which I deem necessary to evaluate the merits and risks of the purchase of the Shares; (2) I have had the opportunity to ask questions concerning the Shares and the Company and all questions posed have been answered to my satisfaction; (3) I have been given the opportunity to obtain any additional information I deem necessary to verify the accuracy of any information obtained concerning the Shares and the Company; and (4) I have such knowledge and experience in financial and business matters that I am able to evaluate the merits and risks of purchasing the Shares and to make an informed investment decision relating thereto.

I hereby represent and warrant that I am purchasing the Shares for my own personal account for investment and not with a view to the sale or distribution of all or any part of the Shares.

I understand that because the Shares have not been registered under the 1933 Act, I must continue to bear the economic risk of the investment for an indefinite time and the Shares cannot be sold unless the Shares are subsequently registered under applicable federal and state securities laws or an exemption from such registration requirements is available.

I agree that I will in no event sell or distribute or otherwise dispose of all or any part of the Shares unless (1) there is an effective registration statement under the 1933 Act and applicable state securities laws covering any such transaction involving the Shares or (2) the Company receives an opinion of my legal counsel (concurred in by legal counsel for the

A-1

Company) stating that such transaction is exempt from registration or the Company otherwise satisfies itself that such transaction is exempt from registration.

I consent to the placing of a legend on my certificate for the Shares stating that the Shares have not been registered and setting forth the restriction on transfer contemplated hereby and to the placing of a stop transfer order on the books of the Company and with any transfer agents against the Shares until the Shares may be legally resold or distributed without restriction.

I understand that at the present time Rule 144 of the Securities and Exchange Commission (the "SEC") may not be relied on for the resale or distribution of the Shares by me. I understand that the Company has no obligation to me to register the sale of the Shares with the SEC and has not represented to me that it will register the sale of the Shares.

I understand the terms and restrictions on the right to dispose of the Shares set forth in the 2003 Employee, Director and Consultant Stock Plan and the Incentive Stock Option Agreement, both of which I have carefully reviewed. I consent to the placing of a legend on my certificate for the Shares referring to such restriction and the placing of stop transfer orders until the Shares may be transferred in accordance with the terms of such restrictions.

I have considered the Federal, state and local income tax implications of the exercise of my Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:


Please issue the stock certificate for the Shares (check one):

[ ] to me; or

[ ] to me and ________________, as joint tenants with right of survivorship and mail the certificate to me at the following address:




A-2

My mailing address for shareholder communications, if different from the address listed above is:




Very truly yours,


Employee (signature)


Print Name


Date


Social Security Number

A-3

Exhibit A

NOTICE OF EXERCISE OF INCENTIVE STOCK OPTION

[FORM FOR REGISTERED SHARES]

TO: Alnylam Holding Co.



IMPORTANT NOTICE: This form of Notice of Exercise may only be used at such time as the Company has filed a Registration Statement with the Securities and Exchange Commission under which the issuance of the Shares for which this exercise is being made is registered and such Registration Statement remains effective.

Ladies and Gentlemen:

I hereby exercise my Incentive Stock Option to purchase _________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Holding Co. (the "Company"), at the exercise price of $________ per share, pursuant to and subject to the terms of that certain Incentive Stock Option Agreement between the undersigned and the Company dated _______________, 200_.

I understand the nature of the investment I am making and the financial risks thereof. I am aware that it is my responsibility to have consulted with competent tax and legal advisors about the relevant national, state and local income tax and securities laws affecting the exercise of the Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:


Please issue the Shares (check one):

[ ] to me; or

[ ] to me and ____________________________, as joint tenants with right of survivorship, at the following address:


A-1



My mailing address for shareholder communications, if different from the address listed above, is:




Very truly yours,


Employee (signature)


Print Name


Date


Social Security Number

A-2

Exhibit B

CONSENT OF SPOUSE

I, ____________________________, spouse of _____________________________, acknowledge that I have read the Incentive Stock Option Agreement dated as of _______________, 200__ (the "Agreement") to which this Consent is attached as Exhibit B and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Shares granted to my spouse pursuant to the Agreement are subject to a right of repurchase in favor of Alnylam Holding Co. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Shares shall be similarly bound by the Agreement.

I agree to the repurchase right described in Section 12.2 of the Agreement and I hereby consent to the repurchase of the Shares by the Company and the sale of the Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Shares by an outright bequest of the Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Shares as it would have had pursuant to the Agreement if I had acquired the Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the _______ day of ________________, 200__.


Print name:

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EXHIBIT C

RESTRICTED STOCK AGREEMENT

ALNYLAM HOLDING CO.

AGREEMENT made as of the ___ day of ____________, 200__ (the "Grant Date"), between Alnylam Holding Co. (the "Company"), a Delaware corporation having its principal place of business in Cambridge, Massachusetts, and ________________ of ________________________, (the "Participant").

WHEREAS, the Company has adopted the Alnylam Holding Co. 2003 Employee, Director and Consultant Stock Plan (the "Plan") to promote the interests of the Company by providing an incentive for employees, directors and consultants of the Company or its Affiliates;

WHEREAS, the parties hereto understand and agree that any terms used and not defined herein have the meanings ascribed to such terms in the Plan and that any and all references herein to employment of the Participant by the Company shall include the Participant's employment or service as an employee, director or consultant of the Company or any Affiliate;

WHEREAS, pursuant to the exercise of an option granted to the Participant pursuant to an Incentive Stock Option Agreement dated ___________ by and between the Company and the Participant issued under the Plan (the "Option Agreement"), which Option Agreement and Plan are hereby incorporated herein by reference, the Participant has elected to purchase _________ shares of the Company's common stock, $.0001 par value per share ("Common Stock"), which have not become vested under the vesting schedule set forth in the Option Agreement (the "Unvested Shares"). The Unvested Shares and the Shares subject to the Option Agreement that have become vested are sometimes collectively referred to herein as the "Shares."

WHEREAS, as required by the Option Agreement, as a condition to the Participant's election to exercise the option, the Participant must execute this Agreement, which sets forth the rights and obligations of the parties with respect to the Unvested Shares acquired upon exercise of the option pursuant to the Option Agreement; and

WHEREAS, Participant wishes to accept said offer in accordance with the provisions of the Plan, all on the terms and conditions hereinafter set forth.

NOW, THEREFORE, in consideration of the premises and the mutual covenants contained herein and for other good and valuable consideration, the receipt and sufficiency of which are hereby acknowledged, the parties hereto hereby agree as follows:

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1. Company's Lapsing Repurchase Right.

(a) Lapsing Repurchase Right. Except as set forth in Subsection 1(b) hereof, in the event that for any reason the Participant no longer is an employee, director or consultant of the Company or an Affiliate, the Company (or its designee) shall have the option, but not the obligation, to purchase from the Participant (or the Participant's Survivor), and, in the event the Company exercises such option, the Participant (or the Participant's Survivor) shall be obligated to sell to the Company (or its designee), at a price per Share equal to the Purchase Price, all or any part of the Unvested Shares determined as of the date of such termination of service (the "Lapsing Repurchase Right"). The Lapsing Repurchase Right with respect to the Unvested Shares shall terminate as to such Unvested Shares in accordance with the vesting schedule set forth in
Section 3 of the Option Agreement. The Company's Lapsing Repurchase Right shall be valid for a period of one year commencing with the date of such termination of employment or service. Notwithstanding any other provision hereof, in the event the Company is prohibited during such one year period from exercising its Lapsing Repurchase Right by Section 160 of the Delaware General Corporation Law as amended from time to time (or any successor provision), then the time period during which such Lapsing Repurchase Right may be exercised shall be extended until 30 days after the Company is first not so prohibited.

(b) Effect of Termination for Disability or upon Death. The following rules apply if the Participant ceases to be an employee, director or consultant of the Company, or an Affiliate, by reason of Disability or death: to the extent the Company's Lapsing Repurchase Right has not lapsed as of the date of Disability or death, as case may be, the Company may exercise such Lapsing Repurchase Right; provided, however, that the Company's Lapsing Repurchase Right shall be deemed to have lapsed to the extent of a pro rata portion of the Unvested Shares through the date of Disability or death, as would have lapsed had the Participant not become Disabled or died, as the case may be. The proration shall be based upon the number of days accrued in such current vesting period prior to the Participant's date of Disability or death, as the case may be.

(c) Closing. In the event that the Company exercises the Lapsing Repurchase Right, the Company shall notify the Participant, or, in the case of the Participant's death, his or her Survivor, in writing of its intent to repurchase the Unvested Shares. Such notice may be mailed by the Company up to and including the last day of the time period provided for above for exercise of the Lapsing Repurchase Right. The notice shall specify the place, time and date for payment of the repurchase price (the "Closing") and the number of Unvested Shares with respect to which the Company is exercising the Lapsing Repurchase Right. The Closing shall be not less than ten days nor more than 60 days from the date of mailing of the notice, and the Participant or the Participant's Survivor with respect to the Unvested Shares which the Company elects to repurchase shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or the Participant's Survivor and the Unvested Shares being repurchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(d) Escrow. The certificates representing all Unvested Shares acquired by the Participant hereunder which from time to time are subject to the Lapsing Repurchase Right shall

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be delivered to the Company and the Company shall hold such Unvested Shares in escrow as provided in this Subsection 1(d). Promptly following receipt by the Company of a written request from the Participant, the Company shall release from escrow and deliver to the Participant a certificate for the whole number of Unvested Shares, if any, as to which the Company's Lapsing Repurchase Right has lapsed. In the event of a repurchase by the Company of Unvested Shares subject to the Lapsing Repurchase Right, the Company shall release from escrow and cancel a certificate for the number of Unvested Shares so repurchased. Any securities distributed in respect of the Unvested Shares held in escrow, including, without limitation, shares issued as a result of stock splits, stock dividends or other recapitalizations, shall also be held in escrow in the same manner as the Unvested Shares.

(e) Prohibition on Transfer. The Participant recognizes and agrees that all Unvested Shares which are subject to the Lapsing Repurchase Right may not be sold, transferred, assigned, hypothecated, pledged, encumbered or otherwise disposed of, whether voluntarily or by operation of law, other than to the Company (or its designee). The Company shall not be required to transfer any Unvested Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Subsection 1(e), or to treat as the owner of such Unvested Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Unvested Shares shall have been so sold, assigned or otherwise transferred, in violation of this Subsection 1(e). The Participant further recognizes and agrees that all Shares remain subject to Section 12 of the Option Agreement, except that with respect to the Unvested Shares subject to the Lapsing Repurchase Right, this Agreement will supercede Section 12.3 of the Option Agreement.

(f) Failure to Deliver Unvested Shares to be Repurchased. In the event that the Unvested Shares to be repurchased by the Company under this Agreement are not in the Company's possession pursuant to Subsection 1(d) above or otherwise and the Participant or the Participant's Survivor fails to deliver such Unvested Shares to the Company (or its designee), the Company may elect (i) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Participant or the Participant's Survivor upon delivery of such Unvested Shares, and (ii) immediately to take such action as is appropriate to transfer record title of such Unvested Shares from the Participant to the Company (or its designee) and to treat the Participant and such Unvested Shares in all respects as if delivery of such Unvested Shares had been made as required by this Agreement. The Participant hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

(g) Adjustments. The Plan and the Option Agreement contain provisions covering the treatment of Shares in a number of contingencies such as stock splits and mergers. Provisions in the Plan and the Option Agreement for adjustment with respect to the Shares and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference.

2. Legend. In addition to any legend required pursuant to the Plan or the Option Agreement, all certificates representing the Unvested Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows:

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"The shares represented by this certificate are subject to restrictions set forth in a Restricted Stock Agreement dated as of ____________, 200__ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

3. Purchase for Investment. If the offering and sale of the Unvested Shares have not been effectively registered under the Securities Act of 1933, as amended, the Participant hereby represents and warrants that he or she is acquiring the Unvested Shares for his or her own account, for investment, and not with a view to, or for sale in connection with, the distribution of any such Unvested Shares.

4. Provisions of Agreement Controlling. The Participant specifically understands and agrees that the Unvested Shares issued under the Plan are being sold to the Participant pursuant to the Plan and the Option Agreement, a copy of which Plan and Option Agreement the Participant acknowledges he or she has read and understands and by which Plan and Option Agreement he or she agrees to be bound. The provisions of the Plan and the Option Agreement are incorporated herein by reference. In the event of a conflict between the terms and conditions of the Plan, this Agreement and the Option Agreement, the provisions of this Agreement will control.

5. Tax Liability of the Participant and Payment of Taxes. The Participant acknowledges and agrees that any income or other taxes due from the Participant with respect to the Unvested Shares issued pursuant to this Agreement, including, without limitation, the Lapsing Repurchase Right, shall be the Participant's responsibility. Without limiting the foregoing, the Participant agrees that, to the extent that the lapsing of restrictions on disposition of any of the Unvested Shares or the declaration of dividends on any such shares before the lapse of such restrictions on disposition results in the Participant's being deemed to be in receipt of earned income under the provisions of the Code, the Company shall be entitled to immediate payment from the Participant of the amount of any tax required to be withheld by the Company.

Upon execution of this Agreement, the Participant may file an election under Section 83 of the Code in substantially the form attached as Attachment I. The Participant acknowledges that if she does not file such an election, as the Unvested Shares are released from the Lapsing Repurchase Right in accordance with Section 1, the Participant may have income for tax purposes equal to the fair market value of the Unvested Shares at such date, less the price paid for the Unvested Shares by the Participant.

6. Securities Law Compliance. The Participant specifically acknowledges and agrees that any sales of Unvested Shares shall be made in accordance with the requirements of the Securities Act of 1933, as amended, in a transaction as to which the Company shall have received an opinion of counsel satisfactory to it confirming such compliance.

7. Equitable Relief. The Participant specifically acknowledges and agrees that in the event of a breach or threatened breach of the provisions of this Agreement, the Option Agreement or the Plan, including the attempted transfer of the Unvested Shares by the

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Participant in violation of this Agreement or the Option Agreement, monetary damages may not be adequate to compensate the Company, and, therefore, in the event of such a breach or threatened breach, in addition to any right to damages, the Company shall be entitled to equitable relief in any court having competent jurisdiction. Nothing herein shall be construed as prohibiting the Company from pursuing any other remedies available to it for any such breach or threatened breach.

8. No Obligation to Maintain Relationship. The Company is not by the Plan, the Option Agreement or this Agreement obligated to continue the Participant as an employee, director or consultant of the Company, or an Affiliate. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Shares is a one-time benefit which does not create any contractual or other right to receive future grants of shares, or benefits in lieu of shares; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when shares shall be granted, the number of shares to be granted, the Purchase Price, and the time or times when each share shall be free from the Lapsing Repurchase Right, will be at the sole discretion of the Company; (iv) that the Participant's participation in the Plan is voluntary; (v) that the value of the Shares is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Shares are not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

9. Notices. Any notices required or permitted by the terms of this Agreement, the Option Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Holding Co.



If to the Participant:


or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given on the earliest of receipt, one business day following delivery by the sender to a recognized courier service, or three business days following mailing by registered or certified mail.

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10. Binding Effect. This Agreement shall be for the benefit of and shall be binding upon the parties hereto, upon their respective successors and assigns and upon the Participant's heirs, executors, administrators.

11. Governing Law. This Agreement shall be construed and enforced in accordance with the laws of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, whether at law or in equity, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

12. Severability. If any provision of this Agreement is held to be invalid or unenforceable by a court of competent jurisdiction, then such provision or provisions shall be modified to the extent necessary to make such provision valid and enforceable, and to the extent that this is impossible, then such provision shall be deemed to be excised from this Agreement, and the validity, legality and enforceability of the rest of this Agreement shall not be affected thereby.

13. Entire Agreement. This Agreement, together with the Plan and the Option Agreement, constitutes the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement, the Option Agreement or the Plan shall affect or be used to interpret, change or restrict the express terms and provisions of this Agreement provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

14. Modifications and Amendments; Waivers and Consents. The terms and provisions of this Agreement may be modified or amended as provided in the Plan. Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

15. Consent of Spouse. If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Attachment II hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Unvested Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of all restrictions contained in this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Attachment II.

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16. Counterparts. This Agreement may be executed in one or more counterparts, and by different parties hereto on separate counterparts, each of which shall be deemed an original, but all of which together shall constitute one and the same instrument.

17. Data Privacy. By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of Shares and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

[THE NEXT PAGE IS THE SIGNATURE PAGE]

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IN WITNESS WHEREOF, the parties hereto have executed this Agreement as of the day and year first above written.

ALNYLAM HOLDING CO.

By:______________________________________________
Name:
Title:

PARTICIPANT:


Print name:

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ATTACHMENT I

ELECTION TO INCLUDE GROSS INCOME IN YEAR
OF TRANSFER PURSUANT TO SECTION 83(b)
OF THE INTERNAL REVENUE CODE OF 1986, AS AMENDED

In accordance with Section 83(b) of the Internal Revenue Code of 1986, as amended (the "Code"), the undersigned hereby elects to include in his gross income as compensation for services the excess, if any, of the fair market value of the property (described below) at the time of transfer over the amount paid for such property.

The following sets for the information required in accordance with the Code and the regulations promulgated hereunder:

1. The name, address and social security number of the undersigned are:

Name:
Address:
Social Security No.:

2. The description of the property with respect to which the election is being made is as follows:

____________ (___) shares (the "Shares") of Common Stock, $.0001 par value per share, of Alnylam Holding Co., a Delaware corporation (the "Company").

3. This election is made for the calendar year ____, with respect to the transfer of the property to the Taxpayer on _________________.

4. Description of restrictions: The property is subject to the following restrictions:

In the event taxpayer's employment with the Company or an Affiliate is terminated, the Company may repurchase all or any portion of the Shares determined as set forth below at the acquisition price paid by the taxpayer:

A. If the termination takes place prior to the First Anniversary Date, the Purchase Option will apply to all of the Shares.

B. If the termination takes place after the First Anniversary Date, the number of Shares to which the Purchase Option applies shall be the Total Shares less (i) the amount of Total Shares vested on the First Anniversary Date and (ii) ___________________ of the Total Shares for each period ending each _____, _____, _____ and _____ after the First Anniversary Date if the taxpayer is employed by the Company or an Affiliate.

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5. The fair market value at time of transfer (determined without regard to any restrictions other than restrictions which by their terms will never lapse) of the property with respect to which this election is being made was not more than $____ per Share.

6. The amount paid by taxpayer for said property was $___ per Share.

7. A copy of this statement has been furnished to the Company.

Signed this ____ day of ______, 200_.


Print Name:

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ATTACHMENT II

CONSENT OF SPOUSE

I, ____________________________, spouse of _____________________________, acknowledge that I have read the RESTRICTED STOCK AGREEMENT dated as of _______________, 200__ (the "Agreement") to which this Consent is attached as Attachment II and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Unvested Shares granted to my spouse pursuant to the Agreement are subject to a Lapsing Repurchase Right in favor of Alnylam Holding Co. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Unvested Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Unvested Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Unvested Shares shall be similarly bound by the Agreement.

I agree to the Lapsing Repurchase Right described in the Agreement and I hereby consent to the repurchase of the Unvested Shares by the Company and the sale of the Unvested Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Unvested Shares by an outright bequest of the Unvested Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Unvested Shares as it would have had pursuant to the Agreement if I had acquired the Unvested Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the _______ day of ________________, 200__.


Print name:

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NON-QUALIFIED STOCK OPTION AGREEMENT

ALNYLAM HOLDING CO.

AGREEMENT made as of the ___ day of ______ ____, between Alnylam Holding Co. (the "Company"), a Delaware corporation having a principal place of business in Cambridge, Massachusetts, and _______________ of ___________ (the "Participant").

WHEREAS, the Company desires to grant to the Participant an Option to purchase shares of its common stock, $.0001 par value per share (the "Shares"), under and for the purposes set forth in the Company's 2003 Employee, Director and Consultant Stock Plan (the "Plan");

WHEREAS, the Company and the Participant understand and agree that any terms used and not defined herein have the same meanings as in the Plan; and

WHEREAS, the Company and the Participant each intend that the Option granted herein shall be a Non-Qualified Option.

NOW, THEREFORE, in consideration of the mutual covenants hereinafter set forth and for other good and valuable consideration, the parties hereto agree as follows:

1. GRANT OF OPTION.

The Company hereby grants to the Participant the right and option to purchase all or any part of an aggregate of _______________ Shares, on the terms and conditions and subject to all the limitations set forth herein, under United States securities and tax laws, and in the Plan, which is incorporated herein by reference. The Participant acknowledges receipt of a copy of the Plan.

2. PURCHASE PRICE.

The purchase price of the Shares covered by the Option shall be $___ per Share, subject to adjustment, as provided in the Plan, in the event of a stock split, reverse stock split or other events affecting the holders of Shares after the date hereof (the "Purchase Price"). Payment shall be made in accordance with Paragraph 8 of the Plan.

3. EXERCISABILITY OF OPTION.

Subject to the terms and conditions set forth in this Agreement and the Plan, the Option granted hereby shall become exercisable for up to ____________________ of the Shares on ______________ and for an additional ____________________ of the Shares on _____, _____, _____ and _____ of each year after the first anniversary of this Agreement until 100% of the Shares have become vested.

Alternatively, at the election of the Participant, the Option may be exercised in whole or in part at any time as to Shares which have not yet vested in accordance with the


above schedule; provided however, as a condition to exercising the Option for such unvested Shares, the Participant shall execute a Restricted Stock Agreement in the form attached hereto as Exhibit C.

The foregoing rights are cumulative and are subject to the other terms and conditions of this Agreement and the Plan.

4. TERM OF OPTION.

The Option shall terminate ten years from the date of this Agreement, but shall be subject to earlier termination as provided herein or in the Plan.

If the Participant ceases to be an employee, director or consultant of the Company or of an Affiliate (for any reason other than the death or Disability of the Participant or termination of the Participant for "cause" (as defined in the Plan), the Option may be exercised, if it has not previously terminated, within three months after the date the Participant ceases to be an employee, director or consultant of the Company or an Affiliate, or within the originally prescribed term of the Option, whichever is earlier, but may not be exercised thereafter. In such event, the Option shall be exercisable only to the extent that the Option has become exercisable and is in effect at the date of such cessation of employment, directorship or consultancy.

Notwithstanding the foregoing, in the event of the Participant's Disability or death within three months after the termination of employment, directorship or consultancy, the Participant or the Participant's Survivors may exercise the Option within one year after the date of the Participant's termination of employment, directorship or consultancy, but in no event after the date of expiration of the term of the Option.

In the event the Participant's employment, directorship or consultancy is terminated by the Company or an Affiliate for "cause" (as defined in the Plan), the Participant's right to exercise any unexercised portion of this Option shall cease immediately as of the time the Participant is notified his or her employment, directorship or consultancy is terminated for "cause", and this Option shall thereupon terminate. Notwithstanding anything herein to the contrary, if subsequent to the Participant's termination, but prior to the exercise of the Option, the Board of Directors of the Company determines that, either prior or subsequent to the Participant's termination, the Participant engaged in conduct which would constitute "cause," then the Participant shall immediately cease to have any right to exercise the Option and this Option shall thereupon terminate.

In the event of the Disability of the Participant, as determined in accordance with the Plan, the Option shall be exercisable within one year after the Participant's termination of service or, if earlier, within the term originally prescribed by the Option. In such event, the Option shall be exercisable:

(a) to the extent that the Option has become exercisable but has not been exercised as of the date of Disability; and

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(b) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of Disability of any additional vesting rights that would have accrued on the next vesting date had the Participant not become Disabled. The proration shall be based upon the number of days accrued in the current vesting period prior to the date of Disability.

In the event of the death of the Participant while an employee, director or consultant of the Company or of an Affiliate, the Option shall be exercisable by the Participant's Survivors within one year after the date of death of the Participant or, if earlier, within the originally prescribed term of the Option. In such event, the Option shall be exercisable:

(x) to the extent that the Option has become exercisable but has not been exercised as of the date of death; and

(y) in the event rights to exercise the Option accrue periodically, to the extent of a pro rata portion through the date of death of any additional vesting rights that would have accrued on the next vesting date had the Participant not died. The proration shall be based upon the number of days accrued in the current vesting period prior to the Participant's date of death.

5. METHOD OF EXERCISING OPTION.

Subject to the terms and conditions of this Agreement, the Option may be exercised by written notice to the Company or its designee, in substantially the form of Exhibit A attached hereto. Such notice shall state the number of Shares with respect to which the Option is being exercised and shall be signed by the person exercising the Option. Payment of the purchase price for such Shares shall be made in accordance with Paragraph 8 of the Plan. The Company shall deliver a certificate or certificates representing such Shares as soon as practicable after the notice shall be received, provided, however, that the Company may delay issuance of such Shares until completion of any action or obtaining of any consent, which the Company deems necessary under any applicable law (including, without limitation, state securities or "blue sky" laws). The certificate or certificates for the Shares as to which the Option shall have been so exercised shall be registered in the Company's share register in the name of the person so exercising the Option (or, if the Option shall be exercised by the Participant and if the Participant shall so request in the notice exercising the Option, shall be registered in the name of the Participant and another person jointly, with right of survivorship) and shall be delivered as provided above to or upon the written order of the person exercising the Option. In the event the Option shall be exercised, pursuant to Section 4 hereof, by any person other than the Participant, such notice shall be accompanied by appropriate proof of the right of such person to exercise the Option. All Shares that shall be purchased upon the exercise of the Option as provided herein shall be fully paid and nonassessable.

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6. PARTIAL EXERCISE.

Exercise of this Option to the extent above stated may be made in part at any time and from time to time within the above limits, except that no fractional share shall be issued pursuant to this Option.

7. NON-ASSIGNABILITY.

The Option shall not be transferable by the Participant otherwise than by will or by the laws of descent and distribution or pursuant to a qualified domestic relations order as defined by the Code or Title I of the Employee Retirement Income Security Act or the rules thereunder. However, the Participant, with the approval of the Administrator, may transfer the Option for no consideration to or for the benefit of the Participant's Immediate Family (including, without limitation, to a trust for the benefit of the Participant's Immediate Family or to a partnership or limited liability company for one or more members of the Participant's Immediate Family), subject to such limits as the Administrator may establish, and the transferee shall remain subject to all the terms and conditions applicable to the Option prior to such transfer and each such transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer. The term "Immediate Family" shall mean the Participant's spouse, former spouse, parents, children, stepchildren, adoptive relationships, sisters, brothers, nieces, nephews and grandchildren (and, for this purpose, shall also include the Participant.) Except as provided in the previous sentence, the Option shall be exercisable, during the Participant's lifetime, only by the Participant (or, in the event of legal incapacity or incompetency, by the Participant's guardian or representative) and shall not be assigned, pledged or hypothecated in any way (whether by operation of law or otherwise) and shall not be subject to execution, attachment or similar process. Any attempted transfer, assignment, pledge, hypothecation or other disposition of the Option or of any rights granted hereunder contrary to the provisions of this Section 7, or the levy of any attachment or similar process upon the Option shall be null and void.

8. NO RIGHTS AS STOCKHOLDER UNTIL EXERCISE.

The Participant shall have no rights as a stockholder with respect to Shares subject to this Agreement until registration of the Shares in the Company's share register in the name of the Participant. Except as is expressly provided in the Plan with respect to certain changes in the capitalization of the Company, no adjustment shall be made for dividends or similar rights for which the record date is prior to the date of such registration.

9. ADJUSTMENTS.

The Plan contains provisions covering the treatment of Options in a number of contingencies such as stock splits and mergers. Provisions in the Plan for adjustment with respect to stock subject to Options and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference, provided, however, in the event of a Change of Control (as defined in the Plan) which the Administrator (as defined in the Plan) or the Successor Board (as defined in the Plan) makes provisions for the treatment of Options under (A) clause (i) of

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the first paragraph of Section 23(B) of the Plan, an additional one-sixteenth (1/16) of the Shares shall become fully vested and immediately exercisable immediately prior to such Change of Control and the remaining Shares which have not vested shall vest in accordance with Section 3 above, provided, however, if the Participant's employment with the Company is Terminated (as defined below), fifty percent (50%) of the Shares which have not yet vested in accordance with
Section 3 above shall become fully vested and immediately exercisable immediately prior to such termination (for purposes of this Section 9, the Participant shall be deemed to have been "Terminated" if at any time before the six-month anniversary of the closing of such Change of Control, (i) the Participant shall fail to be vested with power and authority analogous to the Participant's title and/or office prior to such Change of Control, (ii) the Participant shall lose any significant duties or responsibilities attending such office, (iii) there shall occur a reduction in the Participant's base compensation, or (iv) the Participant's employment with the Company or an Affiliate, or its successor, is terminated without "cause" (as defined in the Plan)) or (B) either clause (ii) or (iii) of the first paragraph of Section 23(B) of the Plan, all Shares under this Option shall become fully vested and immediately exercisable prior to such Change of Control.

10. TAXES.

The Participant acknowledges that upon exercise of the Option the Participant will be deemed to have taxable income measured by the difference between the then fair market value of the Shares received upon exercise and the price paid for such Shares pursuant to this Agreement. The Participant acknowledges that any income or other taxes due from him or her with respect to this Option or the Shares issuable pursuant to this Option shall be the Participant's responsibility.

The Participant agrees that the Company may withhold from the Participant's remuneration, if any, the minimum statutory amount of federal, state and local withholding taxes attributable to such amount that is considered compensation includable in such person's gross income. At the Company's discretion, the amount required to be withheld may be withheld in cash from such remuneration, or in kind from the Shares otherwise deliverable to the Participant on exercise of the Option. The Participant further agrees that, if the Company does not withhold an amount from the Participant's remuneration sufficient to satisfy the Company's income tax withholding obligation, the Participant will reimburse the Company on demand, in cash, for the amount under-withheld.

11. PURCHASE FOR INVESTMENT.

Unless the offering and sale of the Shares to be issued upon the particular exercise of the Option shall have been effectively registered under the Securities Act of 1933, as now in force or hereafter amended (the "1933 Act"), the Company shall be under no obligation to issue the Shares covered by such exercise unless and until the following conditions have been fulfilled:

(a) The person(s) who exercise the Option shall warrant to the Company, at the time of such exercise, that such person(s) are acquiring such Shares for their own respective accounts, for investment, and not with a view to, or for sale in connection with, the distribution of any such Shares, in which event the

5

person(s) acquiring such Shares shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing the Shares issued pursuant to such exercise:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is then available, and (2) there shall have been compliance with all applicable state securities laws;" and

(b) If the Company so requires, the Company shall have received an opinion of its counsel that the Shares may be issued upon such particular exercise in compliance with the 1933 Act without registration thereunder. Without limiting the generality of the foregoing, the Company may delay issuance of the Shares until completion of any action or obtaining of any consent, which the Company deems necessary under any applicable law (including without limitation state securities or "blue sky" laws).

12. RESTRICTIONS ON TRANSFER OF SHARES.

12.1 The Shares acquired by the Participant pursuant to the exercise of the Option granted hereby shall not be transferred by the Participant except as permitted herein.

12.2 In the event of the Participant's termination of service for any reason, the Company shall have the option, but not the obligation, to repurchase all or any part of the Shares issued pursuant to this Agreement (including, without limitation, Shares purchased after termination of employment, Disability or death in accordance with Section 4 hereof). In the event the Company does not, upon the termination of service of the Participant (as described above), exercise its option pursuant to this Section 12.2, the restrictions set forth in the balance of this Agreement shall not thereby lapse, and the Participant for himself or herself, his or her heirs, legatees, executors, administrators and other successors in interest, agrees that the Shares shall remain subject to such restrictions. The following provisions shall apply to a repurchase under this Section 12.2:

(i) The per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Fair Market Value of each such Share determined in accordance with the Plan as of the date of termination of service. provided, however, in the event of a termination by the Company for "cause" (as defined in the Plan), the per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Purchase Price.

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(ii) The Company's option to repurchase the Participant's Shares in the event of termination of service shall be valid for a period of 12 months commencing with the date of such termination of service

(iii) In the event the Company shall be entitled to and shall elect to exercise its option to repurchase the Participant's Shares under this Section 12.2, the Company shall notify the Participant, or in case of death, his or her Survivor, in writing of its intent to repurchase the Shares. Such written notice may be mailed by the Company up to and including the last day of the time period provided for in Section 12.2(ii) for exercise of the Company's option to repurchase.

(iv) The written notice to the Participant shall specify the address at, and the time and date on, which payment of the repurchase price is to be made (the "Closing"). The date specified shall not be less than ten days nor more than 60 days from the date of the mailing of the notice, and the Participant or his or her successor in interest with respect to the Shares shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or his or her successor in interest and the Shares being purchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or his or her successor in interest.

12.3 It shall be a condition precedent to the validity of any sale or other transfer of any Shares by the Participant that the following restrictions be complied with (except as hereinafter otherwise provided):

(i) No Shares owned by the Participant may be sold, pledged or otherwise transferred (including by gift or devise) to any person or entity, voluntarily, or by operation of law, except in accordance with the terms and conditions hereinafter set forth.

(ii) Before selling or otherwise transferring all or part of the Shares, the Participant shall give written notice of such intention to the Company, which notice shall include the name of the proposed transferee, the proposed purchase price per share, the terms of payment of such purchase price and all other matters relating to such sale or transfer and shall be accompanied by a copy of the binding written agreement of the proposed transferee to purchase the Shares of the Participant. Such notice shall constitute a binding offer by the Participant to sell to the Company such number of the Shares then held by the Participant as are proposed to be sold in the notice at the monetary price per share designated in such notice, payable on the terms offered to the Participant by the proposed transferee (provided, however, that the Company shall not be required to meet any non-monetary terms of the proposed transfer, including, without limitation, delivery of other securities in exchange for the Shares proposed to be sold). The Company shall give written notice to the Participant as to whether such offer has been accepted in whole by the Company within sixty days after its receipt of

7

written notice from the Participant. The Company may only accept such offer in whole and may not accept such offer in part. Such acceptance notice shall fix a time, location and date for the closing on such purchase ("Closing Date") which shall not be less than ten nor more than sixty days after the giving of the acceptance notice. The place for such closing shall be at the Company's principal office. At such closing, the Participant shall accept payment as set forth herein and shall deliver to the Company in exchange therefor certificates for the number of Shares stated in the notice accompanied by duly executed instruments of transfer.

(iii) If the Company shall fail to accept any such offer, the Participant shall be free to sell all, but not less than all, of the Shares set forth in his or her notice to the designated transferee at the price and terms designated in the Participant's notice, provided that (i) such sale is consummated within six months after the giving of notice by the Participant to the Company as aforesaid, and (ii) the transferee first agrees in writing to be bound by the provisions of this Section 12 so that such transferee (and all subsequent transferees) shall thereafter only be permitted to sell or transfer the Shares in accordance with the terms hereof. After the expiration of such six months, the provisions of this Section 12.3 shall again apply with respect to any proposed voluntary transfer of the Participant's Shares.

(iv) The restrictions on transfer contained in this Section 12.3 shall not apply to (a) transfers by the Participant to his or her spouse or children or to a trust for the benefit of his or her spouse or children, (b) transfers by the Participant to his or her guardian or conservator, and (c) or transfers by the Participant, in the event of his or her death, to his or her executor(s) or administrator(s) or to trustee(s) under his or her will (collectively, "Permitted Transferees"); provided however, that in any such event the Shares so transferred in the hands of each such Permitted Transferee shall remain subject to this Agreement, and each such Permitted Transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer.

(v) The provisions of this Section 12.3 may be waived by the Company. Any such waiver may be unconditional or based upon such conditions as the Company may impose.

12.4 In the event that the Participant or his or her successor in interest fails to deliver the Shares to be repurchased by the Company under this Agreement, the Company may elect (a) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Participant or his or her successor in interest upon delivery of such Shares, and (b) immediately to take such action as is appropriate to transfer record title of such Shares from the Participant to the Company and to treat the Participant and such Shares in all respects as if delivery of such Shares had been made as required by this Agreement. The Participant hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

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12.5 If the Company shall pay a stock dividend or declare a stock split on or with respect to any of its Common Stock, or otherwise distribute securities of the Company to the holders of its Common Stock, the number of shares of stock or other securities of Company issued with respect to the shares then subject to the restrictions contained in this Agreement shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement. If the Company shall distribute to its stockholders shares of stock of another corporation, the shares of stock of such other corporation, distributed with respect to the Shares then subject to the restrictions contained in this Agreement, shall be added to the Shares subject to the Company's rights to repurchase pursuant to this Agreement.

12.6 If the outstanding shares of Common Stock of the Company shall be subdivided into a greater number of shares or combined into a smaller number of shares, or in the event of a reclassification of the outstanding shares of Common Stock of the Company, or if the Company shall be a party to a merger, consolidation or capital reorganization, there shall be substituted for the Shares then subject to the restrictions contained in this Agreement such amount and kind of securities as are issued in such subdivision, combination, reclassification, merger, consolidation or capital reorganization in respect of the Shares subject immediately prior thereto to the Company's rights to repurchase pursuant to this Agreement.

12.7 The Company shall not be required to transfer any Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Agreement, or to treat as owner of such Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Shares shall have been so sold, assigned or otherwise transferred, in violation of this Agreement.

12.8 The provisions of Sections 12.1, 12.2 and 12.3 shall terminate upon the consummation of a public offering of any of the Company's securities pursuant to a registration statement filed with the Securities and Exchange Commission pursuant to the 1933 Act.

12.9 If, in connection with a registration statement filed by the Company pursuant to the 1933 Act, the Company or its underwriter so requests, the Participant will agree not to sell any Shares for a period not to exceed 180 days following the effectiveness of such registration.

12.10 The Participant acknowledges and agrees that neither the Company, its shareholders nor its directors and officers, has any duty or obligation to disclose to the Participant any material information regarding the business of the Company or affecting the value of the Shares before, at the time of, or following a termination of the employment of the Participant by the Company, including, without limitation, any information concerning plans for the Company to make a public offering of its securities or to be acquired by or merged with or into another firm or entity.

12.11 All certificates representing the Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows: "The shares represented by this certificate are subject to restrictions set forth in a Non-Qualified Stock Option Agreement dated ___________ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

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13. NO OBLIGATION TO MAINTAIN RELATIONSHIP.

The Company is not by the Plan or this Option obligated to continue the Participant as an employee, director or consultant of the Company or an Affiliate. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Option is a one-time benefit which does not create any contractual or other right to receive future grants of options, or benefits in lieu of options; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when options shall be granted, the number of shares subject to each option, the option price, and the time or times when each option shall be exercisable, will be at the sole discretion of the Company; (iv) that the Participant's participation in the Plan is voluntary;
(v) that the value of the Option is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Option is not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

14. NOTICES.

Any notices required or permitted by the terms of this Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Holding Co.
Attn: VP Finance
790 Memorial Drive, Suite 202
Cambridge, MA 02139

If to the Participant:




or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given upon the earlier of receipt, one business day following delivery to a recognized courier service or three business days following mailing by registered or certified mail.

15. GOVERNING LAW.

This Agreement shall be construed and enforced in accordance with the law of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, the parties hereby

10

consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

16. BENEFIT OF AGREEMENT.

Subject to the provisions of the Plan and the other provisions hereof, this Agreement shall be for the benefit of and shall be binding upon the heirs, executors, administrators, successors and assigns of the parties hereto.

17. ENTIRE AGREEMENT.

This Agreement, together with the Plan, embodies the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement shall affect or be used to interpret, change or restrict, the express terms and provisions of this Agreement, provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

18. MODIFICATIONS AND AMENDMENTS.

The terms and provisions of this Agreement may be modified or amended as provided in the Plan.

19. WAIVERS AND CONSENTS.

Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

20. DATA PRIVACY.

By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of options and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

21. CONSENT OF SPOUSE.

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If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Exhibit B hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of Section 12.2 of this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Exhibit B.

[REMAINDER OF PAGE INTENTIONALLY LEFT BLANK]

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IN WITNESS WHEREOF, the Company has caused this Agreement to be executed by its duly authorized officer, and the Participant has hereunto set his or her hand, all as of the day and year first above written.

ALNYLAM HOLDING CO.

By: _____________________________________
Name:
Title:


Participant

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Exhibit A

NOTICE OF EXERCISE OF NON-QUALIFIED STOCK OPTION

[FORM FOR UNREGISTERED SHARES]

To: Alnylam Holding Co.



Ladies and Gentlemen:

I hereby exercise my Non-Qualified Stock Option to purchase __________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Holding Co. (the "Company"), at the exercise price of $_____ per share, pursuant to and subject to the terms of that certain Non-Qualified Stock Option Agreement between the undersigned and the Company dated ________, 200_.

I am aware that the Shares have not been registered under the Securities Act of 1933, as amended (the "1933 Act"), or any state securities laws. I understand that the reliance by the Company on exemptions under the 1933 Act is predicated in part upon the truth and accuracy of the statements by me in this Notice of Exercise.

I hereby represent and warrant that (1) I have been furnished with all information which I deem necessary to evaluate the merits and risks of the purchase of the Shares; (2) I have had the opportunity to ask questions concerning the Shares and the Company and all questions posed have been answered to my satisfaction; (3) I have been given the opportunity to obtain any additional information I deem necessary to verify the accuracy of any information obtained concerning the Shares and the Company; and (4) I have such knowledge and experience in financial and business matters that I am able to evaluate the merits and risks of purchasing the Shares and to make an informed investment decision relating thereto.

I hereby represent and warrant that I am purchasing the Shares for my own personal account for investment and not with a view to the sale or distribution of all or any part of the Shares.

I understand that because the Shares have not been registered under the 1933 Act, I must continue to bear the economic risk of the investment for an indefinite time and the Shares cannot be sold unless the Shares are subsequently registered under applicable federal and state securities laws or an exemption from such registration requirements is available.

I agree that I will in no event sell or distribute or otherwise dispose of all or any part of the Shares unless (1) there is an effective registration statement under the 1933 Act and applicable state securities laws covering any such transaction involving the Shares or (2)

A-1

the Company receives an opinion of my legal counsel (concurred in by legal counsel for the Company) stating that such transaction is exempt from registration or the Company otherwise satisfies itself that such transaction is exempt from registration.

I consent to the placing of a legend on my certificate for the Shares stating that the Shares have not been registered and setting forth the restriction on transfer contemplated hereby and to the placing of a stop transfer order on the books of the Company and with any transfer agents against the Shares until the Shares may be legally resold or distributed without restriction.

I understand that at the present time Rule 144 of the Securities and Exchange Commission (the "SEC") may not be relied on for the resale or distribution of the Shares by me. I understand that the Company has no obligation to me to register the sale of the Shares with the SEC and has not represented to me that it will register the sale of the Shares.

I understand the terms and restrictions on the right to dispose of the Shares set forth in the 2003 Employee, Director and Consultant Stock Plan and the Non-Qualified Stock Option Agreement, both of which I have carefully reviewed. I consent to the placing of a legend on my certificate for the Shares referring to such restriction and the placing of stop transfer orders until the Shares may be transferred in accordance with the terms of such restrictions.

I have considered the Federal, state and local income tax implications of the exercise of my Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:


Please issue the stock certificate for the Shares (check one):

[ ] to me; or

[ ] to me and ________________, as joint tenants with right of survivorship and mail the certificate to me at the following address:




My mailing address for shareholder communications, if different from the address listed above is:

A-2




Very truly yours,


Participant (signature)


Print Name


Date


Social Security Number

A-3

Exhibit A

[FORM FOR REGISTERED SHARES]

NOTICE OF EXERCISE OF NON-QUALIFIED STOCK OPTION

TO: Alnylam Holding Co.



IMPORTANT NOTICE: This form of Notice of Exercise may only be used at such time as the Company has filed a Registration Statement with the Securities and Exchange Commission under which the issuance of the Shares for which this exercise is being made is registered and such Registration Statement remains effective.

Ladies and Gentlemen:

I hereby exercise my Non-Qualified Stock Option to purchase _________ shares (the "Shares") of the common stock, $.0001 par value, of Alnylam Holding Co. (the "Company"), at the exercise price of $________ per share, pursuant to and subject to the terms of that certain Non-Qualified Stock Option Agreement between the undersigned and the Company dated _______________, 200_.

I understand the nature of the investment I am making and the financial risks thereof. I am aware that it is my responsibility to have consulted with competent tax and legal advisors about the relevant national, state and local income tax and securities laws affecting the exercise of the Option and the purchase and subsequent sale of the Shares.

I am paying the option exercise price for the Shares as follows:


Please issue the Shares (check one):

[ ] to me; or

[ ] to me and ____________________________, as joint tenants with right of survivorship, at the following address:

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My mailing address for shareholder communications, if different from the address listed above, is:




Very truly yours,


Participant (signature)


Print Name


Date


Social Security Number

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Exhibit B

CONSENT OF SPOUSE

I, ____________________________, spouse of _____________________________, acknowledge that I have read the Non-Qualified Stock Option Agreement dated as of _______________, 200__ (the "Agreement") to which this Consent is attached as Exhibit B and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Shares granted to my spouse pursuant to the Agreement are subject to a right of repurchase in favor of Alnylam Holding Co. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Shares shall be similarly bound by the Agreement.

I agree to the repurchase right described in Section 12.2 of the Agreement and I hereby consent to the repurchase of the Shares by the Company and the sale of the Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Shares by an outright bequest of the Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Shares as it would have had pursuant to the Agreement if I had acquired the Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the _______ day of ________________, 200__.


Print name:

B-1

EXHIBIT C

RESTRICTED STOCK AGREEMENT

ALNYLAM HOLDING CO.

AGREEMENT made as of the ___ day of ____________, 200__ (the "Grant Date"), between Alnylam Holding Co. (the "Company"), a Delaware corporation having its principal place of business in Cambridge, Massachusetts, and ________________ of ________________________, (the "Participant").

WHEREAS, the Company has adopted the Alnylam Holding Co. 2003 Employee, Director and Consultant Stock Plan (the "Plan") to promote the interests of the Company by providing an incentive for employees, directors and consultants of the Company or its Affiliates;

WHEREAS, the parties hereto understand and agree that any terms used and not defined herein have the meanings ascribed to such terms in the Plan and that any and all references herein to employment of the Participant by the Company shall include the Participant's employment or service as an employee, director or consultant of the Company or any Affiliate;

WHEREAS, pursuant to the exercise of an option granted to the Participant pursuant to a Non-Qualified Stock Option Agreement dated ___________ by and between the Company and the Participant issued under the Plan (the "Option Agreement"), which Option Agreement and Plan are hereby incorporated herein by reference, the Participant has elected to purchase _________ shares of the Company's common stock, $.0001 par value per share ("Common Stock"), which have not become vested under the vesting schedule set forth in the Option Agreement (the "Unvested Shares"). The Unvested Shares and the Shares subject to the Option Agreement that have become vested are sometimes collectively referred to herein as the "Shares."

WHEREAS, as required by the Option Agreement, as a condition to the Participant's election to exercise the option, the Participant must execute this Agreement, which sets forth the rights and obligations of the parties with respect to the Unvested Shares acquired upon exercise of the option pursuant to the Option Agreement; and

WHEREAS, Participant wishes to accept said offer in accordance with the provisions of the Plan, all on the terms and conditions hereinafter set forth.

NOW, THEREFORE, in consideration of the premises and the mutual covenants contained herein and for other good and valuable consideration, the receipt and sufficiency of which are hereby acknowledged, the parties hereto hereby agree as follows:

C-1

1. Company's Lapsing Repurchase Right.

(a) Lapsing Repurchase Right. Except as set forth in Subsection 1(b) hereof, in the event that for any reason the Participant no longer is an employee, director or consultant of the Company or an Affiliate, the Company (or its designee) shall have the option, but not the obligation, to purchase from the Participant (or the Participant's Survivor), and, in the event the Company exercises such option, the Participant (or the Participant's Survivor) shall be obligated to sell to the Company (or its designee), at a price per Share equal to the Purchase Price, all or any part of the Unvested Shares determined as of the date of such termination of service (the "Lapsing Repurchase Right"). The Lapsing Repurchase Right with respect to the Unvested Shares shall terminate as to such Unvested Shares in accordance with the vesting schedule set forth in
Section 3 of the Option Agreement. The Company's Lapsing Repurchase Right shall be valid for a period of one year commencing with the date of such termination of employment or service. Notwithstanding any other provision hereof, in the event the Company is prohibited during such one year period from exercising its Lapsing Repurchase Right by Section 160 of the Delaware General Corporation Law as amended from time to time (or any successor provision), then the time period during which such Lapsing Repurchase Right may be exercised shall be extended until 30 days after the Company is first not so prohibited.

(b) Effect of Termination for Disability or upon Death. The following rules apply if the Participant ceases to be an employee, director or consultant of the Company by reason of Disability or death: to the extent the Company's Lapsing Repurchase Right has not lapsed as of the date of Disability or death, as case may be, the Company may exercise such Lapsing Repurchase Right; provided, however, that the Company's Lapsing Repurchase Right shall be deemed to have lapsed to the extent of a pro rata portion of the Unvested Shares through the date of Disability or death, as would have lapsed had the Participant not become Disabled or died, as the case may be. The proration shall be based upon the number of days accrued in such current vesting period prior to the Participant's date of Disability or death, as the case may be.

(c) Closing. In the event that the Company exercises the Lapsing Repurchase Right, the Company shall notify the Participant, or, in the case of the Participant's death, his or her Survivor, in writing of its intent to repurchase the Unvested Shares. Such notice may be mailed by the Company up to and including the last day of the time period provided for above for exercise of the Lapsing Repurchase Right. The notice shall specify the place, time and date for payment of the repurchase price (the "Closing") and the number of Unvested Shares with respect to which the Company is exercising the Lapsing Repurchase Right. The Closing shall be not less than ten days nor more than 60 days from the date of mailing of the notice, and the Participant or the Participant's Survivor with respect to the Unvested Shares which the Company elects to repurchase shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or the Participant's Survivor and the Unvested Shares being repurchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(d) Escrow. The certificates representing all Unvested Shares acquired by the Participant hereunder which from time to time are subject to the Lapsing Repurchase

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Right shall be delivered to the Company and the Company shall hold such Unvested Shares in escrow as provided in this Subsection 1(d). Promptly following receipt by the Company of a written request from the Participant, the Company shall release from escrow and deliver to the Participant a certificate for the whole number of Unvested Shares, if any, as to which the Company's Lapsing Repurchase Right has lapsed. In the event of a repurchase by the Company of Unvested Shares subject to the Lapsing Repurchase Right, the Company shall release from escrow and cancel a certificate for the number of Unvested Shares so repurchased. Any securities distributed in respect of the Unvested Shares held in escrow, including, without limitation, shares issued as a result of stock splits, stock dividends or other recapitalizations, shall also be held in escrow in the same manner as the Unvested Shares.

(e) Prohibition on Transfer. The Participant recognizes and agrees that all Unvested Shares which are subject to the Lapsing Repurchase Right may not be sold, transferred, assigned, hypothecated, pledged, encumbered or otherwise disposed of, whether voluntarily or by operation of law, other than to the Company (or its designee). However, the Participant, with the approval of the Administrator, may transfer the Unvested Shares for no consideration to or for the benefit of the Participant's Immediate Family (including, without limitation, to a trust for the benefit of the Participant's Immediate Family or to a partnership or limited liability company for one or more members of the Participant's Immediate Family), subject to such limits as the Administrator may establish, and the transferee shall remain subject to all the terms and conditions applicable to this Agreement prior to such transfer and each such transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer. The term "Immediate Family" shall mean the Participant's spouse, former spouse, parents, children, stepchildren, adoptive relationships, sisters, brothers, nieces and nephews and grandchildren (and, for this purpose, shall also include the Participant. The Company shall not be required to transfer any Unvested Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Subsection 1(e), or to treat as the owner of such Unvested Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Unvested Shares shall have been so sold, assigned or otherwise transferred, in violation of this Subsection 1(e). The Participant further recognizes and agrees that all Shares remain subject to Section 12 of the Option Agreement, except that with respect to the Unvested Shares subject to the Lapsing Repurchase Right, this Agreement will supercede Section 12.3 of the Option Agreement.

(f) Failure to Deliver Unvested Shares to be Repurchased. In the event that the Unvested Shares to be repurchased by the Company under this Agreement are not in the Company's possession pursuant to Subsection 1(d) above or otherwise and the Participant or the Participant's Survivor fails to deliver such Unvested Shares to the Company (or its designee), the Company may elect (i) to establish a segregated account in the amount of the repurchase price, such account to be turned over to the Participant or the Participant's Survivor upon delivery of such Unvested Shares, and (ii) immediately to take such action as is appropriate to transfer record title of such Unvested Shares from the Participant to the Company (or its designee) and to treat the Participant and such Unvested Shares in all respects as if delivery of such Unvested Shares had been made as required by this Agreement. The Participant hereby irrevocably grants the Company a power of attorney

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which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

(g) Adjustments. The Plan and the Option Agreement contain provisions covering the treatment of Shares in a number of contingencies such as stock splits and mergers. Provisions in the Plan and the Option Agreement for adjustment with respect to the Shares and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference.

2. Legend. In addition to any legend required pursuant to the Plan or the Option Agreement, all certificates representing the Unvested Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows:

"The shares represented by this certificate are subject to restrictions set forth in a Restricted Stock Agreement dated as of ____________, 200__ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

3. Purchase for Investment. If the offering and sale of the Unvested Shares have not been effectively registered under the Securities Act of 1933, as amended, the Participant hereby represents and warrants that he or she is acquiring the Unvested Shares for his or her own account, for investment, and not with a view to, or for sale in connection with, the distribution of any such Unvested Shares.

4. Provisions of Agreement Controlling. The Participant specifically understands and agrees that the Unvested Shares issued under the Plan are being sold to the Participant pursuant to the Plan and the Option Agreement, a copy of which Plan and Option Agreement the Participant acknowledges he or she has read and understands and by which Plan and Option Agreement he or she agrees to be bound. The provisions of the Plan and the Option Agreement are incorporated herein by reference. In the event of a conflict between the terms and conditions of the Plan, this Agreement and the Option Agreement, the provisions of this Agreement will control.

5. Tax Liability of the Participant and Payment of Taxes. The Participant acknowledges and agrees that any income or other taxes due from the Participant with respect to the Unvested Shares issued pursuant to this Agreement, including, without limitation, the Lapsing Repurchase Right, shall be the Participant's responsibility. Without limiting the foregoing, the Participant agrees that, to the extent that the lapsing of restrictions on disposition of any of the Unvested Shares or the declaration of dividends on any such shares before the lapse of such restrictions on disposition results in the Participant's being deemed to be in receipt of earned income under the provisions of the Code, the Company shall be entitled to immediate payment from the Participant of the amount of any tax required to be withheld by the Company.

Upon execution of this Agreement, the Participant may file an election under Section 83 of the Code in substantially the form attached as Attachment I. The Participant acknowledges that if she does not file such an election, as the Unvested Shares are released

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from the Lapsing Repurchase Right in accordance with Section 1, the Participant will have income for tax purposes equal to the fair market value of the Unvested Shares at such date, less the price paid for the Unvested Shares by the Participant.

6. Securities Law Compliance. The Participant specifically acknowledges and agrees that any sales of Unvested Shares shall be made in accordance with the requirements of the Securities Act of 1933, as amended, in a transaction as to which the Company shall have received an opinion of counsel satisfactory to it confirming such compliance.

7. Equitable Relief. The Participant specifically acknowledges and agrees that in the event of a breach or threatened breach of the provisions of this Agreement, the Option Agreement or the Plan, including the attempted transfer of the Unvested Shares by the Participant in violation of this Agreement or the Option Agreement, monetary damages may not be adequate to compensate the Company, and, therefore, in the event of such a breach or threatened breach, in addition to any right to damages, the Company shall be entitled to equitable relief in any court having competent jurisdiction. Nothing herein shall be construed as prohibiting the Company from pursuing any other remedies available to it for any such breach or threatened breach.

8. No Obligation to Maintain Relationship. The Company is not by the Plan, the Option Agreement or this Agreement obligated to continue the Participant as an employee, director or consultant of the Company. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Shares is a one-time benefit which does not create any contractual or other right to receive future grants of shares, or benefits in lieu of shares; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when shares shall be granted, the number of shares to be granted, the Purchase Price, and the time or times when each share shall be free from the Lapsing Repurchase Right, will be at the sole discretion of the Company; (iv) that the Participant's participation in the Plan is voluntary; (v) that the value of the Shares is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Shares are not part of normal or expected compensation for purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

9. Notices. Any notices required or permitted by the terms of this Agreement, the Option Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Holding Co.



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If to the Participant:




or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given on the earliest of receipt, one business day following delivery by the sender to a recognized courier service, or three business days following mailing by registered or certified mail.

10. Binding Effect. This Agreement shall be for the benefit of and shall be binding upon the parties hereto, upon their respective successors and assigns and upon the Participant's heirs, executors, administrators.

11. Governing Law. This Agreement shall be construed and enforced in accordance with the laws of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, whether at law or in equity, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

12. Severability. If any provision of this Agreement is held to be invalid or unenforceable by a court of competent jurisdiction, then such provision or provisions shall be modified to the extent necessary to make such provision valid and enforceable, and to the extent that this is impossible, then such provision shall be deemed to be excised from this Agreement, and the validity, legality and enforceability of the rest of this Agreement shall not be affected thereby.

13. Entire Agreement. This Agreement, together with the Plan and the Option Agreement, constitutes the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set forth in this Agreement, the Option Agreement or the Plan shall affect or be used to interpret, change or restrict the express terms and provisions of this Agreement provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

14. Modifications and Amendments; Waivers and Consents. The terms and provisions of this Agreement may be modified or amended as provided in the Plan. Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be

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effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

15. Consent of Spouse. If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Attachment II hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Unvested Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of all restrictions contained in this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Attachment II.

16. Counterparts. This Agreement may be executed in one or more counterparts, and by different parties hereto on separate counterparts, each of which shall be deemed an original, but all of which together shall constitute one and the same instrument.

17. Data Privacy. By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of Shares and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

[THE NEXT PAGE IS THE SIGNATURE PAGE]

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IN WITNESS WHEREOF, the parties hereto have executed this Agreement as of the day and year first above written.

ALNYLAM HOLDING CO.

By:___________________________________
Name:
Title:

PARTICIPANT:


Print name:

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ATTACHMENT I

ELECTION TO INCLUDE GROSS INCOME IN YEAR
OF TRANSFER PURSUANT TO SECTION 83(b)
OF THE INTERNAL REVENUE CODE OF 1986, AS AMENDED

In accordance with Section 83(b) of the Internal Revenue Code of 1986, as amended (the "Code"), the undersigned hereby elects to include in his gross income as compensation for services the excess, if any, of the fair market value of the property (described below) at the time of transfer over the amount paid for such property.

The following sets for the information required in accordance with the Code and the regulations promulgated hereunder:

1. The name, address and social security number of the undersigned are:

Name:
Address:
Social Security No.:

2. The description of the property with respect to which the election is being made is as follows:

____________ (___) shares (the "Shares") of Common Stock, $.0001 par value per share, of Alnylam Holding Co., a Delaware corporation (the "Company").

3. This election is made for the calendar year ____, with respect to the transfer of the property to the Taxpayer on _________________.

4. Description of restrictions: The property is subject to the following restrictions:

In the event taxpayer's employment with the Company or an Affiliate is terminated, the Company may repurchase all or any portion of the Shares determined as set forth below at the acquisition price paid by the taxpayer:

A. If the termination takes place on or prior to ____________, the Purchase Option will apply to all of the Shares.

B. If the termination takes place after __________, 200_, the number of Shares to which the Purchase Option applies shall be ______________
(___) Shares less (i)_______________ (___) Shares and (ii) ___________________ (___) Shares for each period ending each _____, _____, _____ and _____ elapsed after _____________, 200_ if the taxpayer is employed by the Company or an Affiliate.

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5. The fair market value at time of transfer (determined without regard to any restrictions other than restrictions which by their terms will never lapse) of the property with respect to which this election is being made was not more than $____ per Share.

6. The amount paid by taxpayer for said property was $___ per Share.

7. A copy of this statement has been furnished to the Company.

Signed this ____ day of ______, 200_.


Print Name:

I-2

ATTACHMENT II

CONSENT OF SPOUSE

I, ____________________________, spouse of _____________________________, acknowledge that I have read the RESTRICTED STOCK AGREEMENT dated as of _______________, 200__ (the "Agreement") to which this Consent is attached as Attachment II and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Unvested Shares granted to my spouse pursuant to the Agreement are subject to a Lapsing Repurchase Right in favor of Alnylam Holding Co. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Unvested Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Unvested Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Unvested Shares shall be similarly bound by the Agreement.

I agree to the Lapsing Repurchase Right described in the Agreement and I hereby consent to the repurchase of the Unvested Shares by the Company and the sale of the Unvested Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Unvested Shares by an outright bequest of the Unvested Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Unvested Shares as it would have had pursuant to the Agreement if I had acquired the Unvested Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the _______ day of ________________, 200__.


Print name:

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RESTRICTED STOCK AGREEMENT

ALNYLAM HOLDING CO.

AGREEMENT made as of the ___ day of ____________, 200__ (the "Grant Date"), between Alnylam Holding Co. (the "Company"), a Delaware corporation having its principal place of business in Cambridge, Massachusetts, and ________________ of ________________________, (the "Participant").

WHEREAS, the Company has adopted the Alnylam Holding Co. 2003 Employee, Director and Consultant Stock Plan (the "Plan") to promote the interests of the Company by providing an incentive for employees, directors and consultants of the Company or its Affiliates;

WHEREAS, pursuant to the provisions of the Plan, the Company desires to offer for sale to the Participant shares of the Company's common stock, $.0001 par value per share ("Common Stock"), in accordance with the provisions of the Plan, all on the terms and conditions hereinafter set forth;

WHEREAS, Participant wishes to accept said offer; and

WHEREAS, the parties hereto understand and agree that any terms used and not defined herein have the meanings ascribed to such terms in the Plan.

NOW, THEREFORE, in consideration of the premises and the mutual covenants contained herein and for other good and valuable consideration, the receipt and sufficiency of which are hereby acknowledged, the parties hereto hereby agree as follows:

1. Terms of Purchase. The Participant hereby accepts the offer of the Company to issue to the Participant, in accordance with the terms of the Plan and this Agreement, _______________________ Shares of the Company's Common Stock (such shares, subject to adjustment pursuant to Section 23 of the Plan and Subsection 2.1(i) hereof, the "Granted Shares") at a purchase price per share of $______ (the "Purchase Price"), receipt of which is hereby acknowledged by the Company. Payment shall be made in accordance with Section 9 of the Plan.

2.1. Company's Lapsing Repurchase Right.

(a) Lapsing Repurchase Right. Except as set forth in Subsections 2.1(b) hereof, in the event that for any reason the Participant no longer is an employee, director or consultant of the Company or an Affiliate prior to the fourth anniversary of the Grant Date, the Company (or its designee) shall have the option, but not the obligation, to purchase from the Participant (or the Participant's Survivor), and, in the event the Company exercises such option, the Participant (or the Participant's Survivor) shall be obligated to sell to the Company (or its designee), at a price per Granted Share equal to the Purchase Price, all or any part of the Granted Shares set forth in clauses (i),
(ii) and (iii) below (the "Lapsing Repurchase Right"). The Company's Lapsing


Repurchase Right shall be valid for a period of one year commencing with the date of such termination of employment or service. Notwithstanding any other provision hereof, in the event the Company is prohibited during such one year period from exercising its Lapsing Repurchase Right by Section 160 of the Delaware General Corporation Law as amended from time to time (or any successor provision), then the time period during which such Lapsing Repurchase Right may be exercised shall be extended until 30 days after the Company is first not so prohibited.

(i) If such termination is prior to the first anniversary of the Grant Date, the Company shall have the option to repurchase all of the Granted Shares acquired by the Participant hereunder.

(ii) If such termination is on or after the first anniversary of the Grant Date, the Company shall have the option to repurchase all of the Granted Shares less ___________ of the Granted Shares and an additional ___________ for each period ending on each _____, _____, _____ and _____ after the first anniversary of the Grant Date that the Participant continues to serve as an employee, director or consultant of the Company or an Affiliate.

(iii) Notwithstanding anything to the contrary contained in this Agreement, in the event the Company or an Affiliate terminates the Participant's employment or service for "cause" (as defined in the Plan) or in the event the Administrator determines, within 90 days after the Participant's termination, that either prior or subsequent to the Participant's termination the Participant engaged in conduct that would constitute "cause," the Company shall have the option to repurchase all of the Granted Shares acquired by the Participant hereunder at the Purchase Price.

(b) Effect of Termination for Disability or upon Death. Except as otherwise provided in Subsection 2.1(a)(iii) above, the following rules apply if the Participant ceases to be an employee, director or consultant of the Company or an Affiliate by reason of Disability or death: to the extent the Company's Lapsing Repurchase Right has not lapsed as of the date of Disability or death, as case may be, the Company may exercise such Lapsing Repurchase Right; provided, however, that the Company's Lapsing Repurchase Right shall be deemed to have lapsed to the extent of a pro rata portion of the Granted Shares through the date of Disability or death, as would have lapsed had the Participant not become Disabled or died, as the case may be. The proration shall be based upon the number of days accrued in such current vesting period prior to the Participant's date of Disability or death, as the case may be.

(c) Closing. In the event that the Company exercises the Lapsing Repurchase Right, the Company shall notify the Participant, or, in the case of the Participant's death, his or her Survivor, in writing of its intent to repurchase the Granted Shares. Such notice may be mailed by the Company up to and including the last day of the time period provided for above for exercise of the Lapsing Repurchase Right. The notice shall specify the place, time and date for payment of the repurchase price (the "Closing") and the number of Granted Shares with respect to which the Company is exercising the Lapsing Repurchase Right. The Closing shall be not less

2

than ten days nor more than 60 days from the date of mailing of the notice, and the Participant or the Participant's Survivor with respect to the Granted Shares which the Company elects to repurchase shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the repurchase price shall be delivered to the Participant or the Participant's Survivor and the Granted Shares being repurchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(d) Escrow. The certificates representing all Granted Shares acquired by the Participant hereunder which from time to time are subject to the Lapsing Repurchase Right shall be delivered to the Company and the Company shall hold such Granted Shares in escrow as provided in this Subsection 2.1(d). Promptly following receipt by the Company of a written request from the Participant, the Company shall release from escrow and deliver to the Participant a certificate for the whole number of Granted Shares, if any, as to which the Company's Lapsing Repurchase Right has lapsed. In the event of a repurchase by the Company of Granted Shares subject to the Lapsing Repurchase Right, the Company shall release from escrow and cancel a certificate for the number of Granted Shares so repurchased. Any securities distributed in respect of the Granted Shares held in escrow, including, without limitation, shares issued as a result of stock splits, stock dividends or other recapitalizations, shall also be held in escrow in the same manner as the Granted Shares.

(e) Prohibition on Transfer. The Participant recognizes and agrees that all Granted Shares which are subject to the Lapsing Repurchase Right may not be sold, transferred, assigned, hypothecated, pledged, encumbered or otherwise disposed of, whether voluntarily or by operation of law, other than to the Company (or its designee). However, the Participant, with the approval of the Administrator, may transfer the Granted Shares for no consideration to or for the benefit of the Participant's Immediate Family (including, without limitation, to a trust for the benefit of the Participant's Immediate Family or to a partnership or limited liability company for one or more members of the Participant's Immediate Family), subject to such limits as the Administrator may establish, and the transferee shall remain subject to all the terms and conditions applicable to this Agreement prior to such transfer and each such transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer. The term "Immediate Family" shall mean the Participant's spouse, former spouse, parents, children, stepchildren, adoptive relationships, sisters, brothers, nieces and nephews and grandchildren (and, for this purpose, shall also include the Participant. The Company shall not be required to transfer any Granted Shares on its books which shall have been sold, assigned or otherwise transferred in violation of this Subsection 2.1(e), or to treat as the owner of such Granted Shares, or to accord the right to vote as such owner or to pay dividends to, any person or organization to which any such Granted Shares shall have been so sold, assigned or otherwise transferred, in violation of this Subsection 2.1(e).

(f) Failure to Deliver Granted Shares to be Repurchased. In the event that the Granted Shares to be repurchased by the Company under this Agreement are not in the Company's possession pursuant to Subsection 2.1(d) above or otherwise and the Participant or the Participant's Survivor fails to deliver such Granted Shares to the Company (or its designee), the Company may elect (i) to establish a segregated account in the amount of the repurchase

3

price, such account to be turned over to the Participant or the Participant's Survivor upon delivery of such Granted Shares, and (ii) immediately to take such action as is appropriate to transfer record title of such Granted Shares from the Participant to the Company (or its designee) and to treat the Participant and such Granted Shares in all respects as if delivery of such Granted Shares had been made as required by this Agreement. The Participant hereby irrevocably grants the Company a power of attorney which shall be coupled with an interest for the purpose of effectuating the preceding sentence.

(g) Adjustments. The Plan contains provisions covering the treatment of Shares in a number of contingencies such as stock splits and mergers. Provisions in the Plan for adjustment with respect to the Shares and the related provisions with respect to successors to the business of the Company are hereby made applicable hereunder and are incorporated herein by reference, provided, however, in the event of a Change of Control (as defined in the Plan) which the Administrator (as defined in the Plan) or the Successor Board (as defined in the Plan) makes provisions for the treatment of Stock Grants under (A) clause (i) of the second paragraph of Section 23(B) of the Plan, an additional one-sixteenth (1/16) of the Shares shall become fully vested and the Company's Lapsing Repurchase Right shall terminate as to such additional one-sixteenth (1/16) of the Shares immediately prior to such Change of Control and the remaining unvested Shares shall vest in accordance with the provisions of this Agreement, provided, however, if the Participant's employment with the Company is Terminated (as defined below), fifty percent (50%) of all unvested Shares shall become fully vested and the Company's Lapsing Repurchase Right shall terminate with respect to such fifty percent (50%) of the Shares immediately prior to such termination (for purposes of this Section 2.1(g), the Participant shall be deemed to have been "Terminated" if at any time before the six-month anniversary of the closing of such Change of Control, (i) the Employee shall fail to be vested with power and authority analogous to the Participant's title and/or office prior to such Change of Control, (ii) the Participant shall lose any significant duties or responsibilities attending such office, (iii) there shall occur a reduction in the Participant's base compensation, or (iv) the Participant's employment with the Company or an Affiliate, or its successor is terminated without "cause" (as defined in the Plan)) or (B) either clause (ii) or (iii) of the second paragraph of Section 23(B) of the Plan, all Shares shall become fully vested immediately prior to such Change of Control and the Company's Lapsing Repurchase Right shall terminate immediately prior to such Change of Control.

2.2 General Restrictions on Transfer of Granted Shares.

(a) Limitations on Transfer. In addition to the restrictions set forth above in Section 2.1, the Granted Shares acquired by the Participant hereunder and no longer subject to the provisions of Section 2.1 herein (the "Vested Shares") shall not be transferred by the Participant except as permitted herein, shall be subject to the provisions of Sections 2.1 (d), (e) and (f) above and shall be subject to the repurchase rights described herein.

(b) Right to Repurchase following Termination of Service. If the Participant's service as an employee, director or consultant with the Company or an Affiliate shall be terminated for any reason other than for "cause" (as defined in the Plan), including due to death or Disability, then the Company shall have the option to repurchase the Vested Shares not

4

previously repurchased in accordance with the provisions of Section 2.1 of this Agreement as follows:

(i) The Company's option to repurchase the Vested Shares in the event of termination of service under this Section 2.2(b) shall be valid for a period of one year commencing with the date of such termination of service.

(ii) In the event the Company shall be entitled to and shall elect to exercise its option to repurchase the Vested Shares under this Section 2.2(b), the Company shall notify the Participant, or in case of death, his or her Survivor, in writing of its intent to repurchase the Vested Shares. Such written notice may be mailed by the Company up to and including the last day of the time period provided for in Section 2.2(b)(i) for exercise of the Company's option to repurchase.

(iii) The written notice to the Participant shall specify the address at, and the time and date on, which payment of the Repurchase Price (as defined herein) is to be made (the "Closing"). The date specified shall not be less than ten days nor more than 60 days from the date of the mailing of the notice, and the Participant or the Participant's Survivor with respect to the Vested Shares shall have no further rights as the owner thereof from and after the date specified in the notice. At the Closing, the Repurchase Price (as defined below) shall be delivered to the Participant or the Participant's Survivor and the Vested Shares being purchased, duly endorsed for transfer, shall, to the extent that they are not then in the possession of the Company, be delivered to the Company by the Participant or the Participant's Survivor.

(iv) The price paid per share for any Vested Shares repurchased hereunder (the "Repurchase Price") shall equal the Fair Market Value of such Vested Shares determined in accordance with the Plan as of the date of termination of service, provided, however, in the event of a termination by the Company or an Affiliate for "cause" (as defined in the Plan), the per share repurchase price of the Shares to be sold to the Company upon exercise of its option under this Section 12.2 shall be equal to the Purchase Price.

(c) Right to Repurchase on Proposed Transfer. It shall be a condition precedent to the validity of any sale or other transfer of any Vested Shares by the Participant that the following restrictions be complied with (except as hereinafter otherwise provided):

(i) No Vested Shares owned by the Participant may be sold, pledged or otherwise transferred (including by gift or devise) to any person or entity, voluntarily, or by operation of law, except in accordance with the terms and conditions hereinafter set forth.

(ii) Before selling or otherwise transferring all or part of the Vested Shares, the Participant shall give written notice of such intention to the Company which notice

5

shall include the name of the proposed transferee, the proposed purchase price per share, the terms of payment of such purchase price and all other matters relating to such sale or transfer and shall be accompanied by a copy of the binding written agreement of the proposed transferee to purchase the Vested Shares of the Participant. Such notice shall constitute a binding offer by the Participant to sell to the Company such number of the Vested Shares then held by the Participant as are proposed to be sold in the notice at the monetary price per share designated in such notice, payable on the terms offered to the Participant by the proposed transferee (provided, however, that the Company shall not be required to meet any non-monetary terms of the proposed transfer, including, without limitation, delivery of other securities in exchange for the Vested Shares proposed to be sold). The Company shall give written notice to the Participant as to whether such offer has been accepted in whole by the Company within 60 days after its receipt of written notice from the Participant. The Company may only accept such offer in whole and may not accept such offer in part. Such acceptance notice shall specify a place, a time, and date for the closing on such purchase (the "Closing") which shall not be less than ten nor more than 60 days after the giving of the acceptance notice. At the Closing, the Participant shall accept payment as set forth herein and shall deliver to the Company in exchange therefor the Granted Shares being repurchased, duly endorsed for transfer, to the extent that they are not then in the possession of the Company.

(iii) If the Company shall fail to accept any such offer, the Participant shall be free to sell all, but not less than all, of the Vested Shares set forth in her notice to the designated transferee at the price and terms designated in the Participant's notice, provided that (i) such sale is consummated within six months after the giving of notice by the Participant to the Company as aforesaid, and (ii) the transferee first agrees in writing to be bound by the provisions of this Section 2.2(c) so that he or she (and all subsequent transferees) shall thereafter only be permitted to sell or transfer the Vested Shares in accordance with the terms hereof. After the expiration of such six months, the provisions of this Section 2.2(c) shall again apply with respect to any proposed voluntary transfer of the Vested Shares.

(iv) The provisions of this Section 2.2(c) may be waived by the Company. Any such waiver may be unconditional or based upon such conditions as the Company may impose.

(v) The restrictions on transfer contained in this Section 2.2(c) shall not apply to (a) transfers by the Participant to his or her spouse or children or to a trust for the benefit of his or her spouse or children, (b) transfers by the Participant to his or her guardian or conservator, and (c) or transfers by the Participant, in the event of his or her death, to his or her executor(s) or administrator(s) or to trustee(s) under his or her will (collectively, "Permitted Transferees"); provided however, that in any such event the Vested Shares so transferred in the hands of each such Permitted Transferee shall remain subject to this Agreement, and each such Permitted Transferee shall so acknowledge in writing as a condition precedent to the effectiveness of such transfer.

6

(d) The provisions of Section 2.2 (a) through (d) shall terminate upon the consummation of a public offering of any of the Company's securities pursuant to a registration statement filed with the Securities and Exchange Commission pursuant to the Securities Act of 1933, as amended (the "1933 Act").

(e) If in connection with a registration statement filed by the Company pursuant to the 1933 Act, the Company or its underwriter so requests, the Participant will agree not to sell any of her Vested Shares for a period not to exceed the lesser of: (i) 180 days following the effectiveness of such registration statement or (ii) such period as the officers and directors of the Company agree not to sell their Common Stock of the Company.

(f) The Participant acknowledges and agrees that neither the Company nor, its shareholders nor its directors and officers, has any duty or obligation to disclose to the Participant any material information regarding the business of the Company or affecting the value of the Shares before, at the time of, or following a termination of the employment of the Participant by the Company or an Affiliate, including, without limitation, any information concerning plans for the Company to make a public offering of its securities or to be acquired by or merged with or into another firm or entity.

3. Legend. In addition to any legend required pursuant to the Plan, all certificates representing the Granted Shares to be issued to the Participant pursuant to this Agreement shall have endorsed thereon a legend substantially as follows:

"The shares represented by this certificate are subject to restrictions set forth in a Restricted Stock Agreement dated as of ____________, 200__ with this Company, a copy of which Agreement is available for inspection at the offices of the Company or will be made available upon request."

4. Purchase for Investment; Securities Law Compliance. If the offering and sale of the Granted Shares have not been effectively registered under the 1933 Act, the Participant hereby represents and warrants that he or she is acquiring the Granted Shares for his or her own account, for investment, and not with a view to, or for sale in connection with, the distribution of any such Granted Shares. The Participant specifically acknowledges and agrees that any sales of Granted Shares shall be made in accordance with the requirements of the 1933 Act, in a transaction as to which the Company shall have received an opinion of counsel satisfactory to it confirming such compliance. The Participant shall be bound by the provisions of the following legend which shall be endorsed upon the certificate(s) evidencing the Shares issued:

"The shares represented by this certificate have been taken for investment and they may not be sold or otherwise transferred by any person, including a pledgee, unless (1) either (a) a Registration Statement with respect to such shares shall be effective under the Securities Act of 1933, as amended, or (b) the Company shall have received an opinion of counsel satisfactory to it that an exemption from registration under such Act is then available, and (2) there shall have been compliance with all applicable state securities laws."

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5. Incorporation of the Plan. The Participant specifically understands and agrees that the Granted Shares issued under the Plan are being sold to the Participant pursuant to the Plan, a copy of which Plan the Participant acknowledges he or she has read and understands and by which Plan he or she agrees to be bound. The provisions of the Plan are incorporated herein by reference.

6. Tax Liability of the Participant and Payment of Taxes. The Participant acknowledges and agrees that any income or other taxes due from the Participant with respect to the Granted Shares issued pursuant to this Agreement, including, without limitation, the Lapsing Repurchase Right, shall be the Participant's responsibility. Without limiting the foregoing, the Participant agrees that, to the extent that the lapsing of restrictions on disposition of any of the Granted Shares or the declaration of dividends on any such shares before the lapse of such restrictions on disposition results in the Participant's being deemed to be in receipt of earned income under the provisions of the Code, the Company shall be entitled to immediate payment from the Participant of the amount of any tax required to be withheld by the Company.

Upon execution of this Agreement, the Participant may file an election under Section 83 of the Code in substantially the form attached as Exhibit B. The Participant acknowledges that if she does not file such an election, as the Granted Shares are released from the Lapsing Repurchase Right in accordance with
Section 2.1, the Participant will have income for tax purposes equal to the fair market value of the Granted Shares at such date, less the price paid for the Granted Shares by the Participant.

7. Equitable Relief. The Participant specifically acknowledges and agrees that in the event of a breach or threatened breach of the provisions of this Agreement or the Plan, including the attempted transfer of the Granted Shares by the Participant in violation of this Agreement, monetary damages may not be adequate to compensate the Company, and, therefore, in the event of such a breach or threatened breach, in addition to any right to damages, the Company shall be entitled to equitable relief in any court having competent jurisdiction. Nothing herein shall be construed as prohibiting the Company from pursuing any other remedies available to it for any such breach or threatened breach.

8. No Obligation to Maintain Relationship. The Company is not by the Plan or this Agreement obligated to continue the Participant as an employee, director or consultant of the Company or an Affiliate. The Participant acknowledges: (i) that the Plan is discretionary in nature and may be suspended or terminated by the Company at any time; (ii) that the grant of the Shares is a one-time benefit which does not create any contractual or other right to receive future grants of shares, or benefits in lieu of shares; (iii) that all determinations with respect to any such future grants, including, but not limited to, the times when shares shall be granted, the number of shares to be granted, the purchase price, and the time or times when each share shall be free from a lapsing repurchase right, will be at the sole discretion of the Company;
(iv) that the Participant's participation in the Plan is voluntary; (v) that the value of the Shares is an extraordinary item of compensation which is outside the scope of the Participant's employment contract, if any; and (vi) that the Shares are not part of normal or expected compensation for

8

purposes of calculating any severance, resignation, redundancy, end of service payments, bonuses, long-service awards, pension or retirement benefits or similar payments.

9. Notices. Any notices required or permitted by the terms of this Agreement or the Plan shall be given by recognized courier service, facsimile, registered or certified mail, return receipt requested, addressed as follows:

If to the Company:

Alnylam Holding Co.



If to the Participant:




or to such other address or addresses of which notice in the same manner has previously been given. Any such notice shall be deemed to have been given on the earliest of receipt, one business day following delivery by the sender to a recognized courier service, or three business days following mailing by registered or certified mail.

10. Benefit of Agreement. Subject to the provisions of the Plan and the other provisions hereof, this Agreement shall be for the benefit of and shall be binding upon the heirs, executors, administrators, successors and assigns of the parties hereto.

11. Governing Law. This Agreement shall be construed and enforced in accordance with the laws of the State of Delaware, without giving effect to the conflict of law principles thereof. For the purpose of litigating any dispute that arises under this Agreement, whether at law or in equity, the parties hereby consent to exclusive jurisdiction in Massachusetts and agree that such litigation shall be conducted in the courts of Suffolk County, Massachusetts or the federal courts of the United States for the District of Massachusetts.

12. Severability. If any provision of this Agreement is held to be invalid or unenforceable by a court of competent jurisdiction, then such provision or provisions shall be modified to the extent necessary to make such provision valid and enforceable, and to the extent that this is impossible, then such provision shall be deemed to be excised from this Agreement, and the validity, legality and enforceability of the rest of this Agreement shall not be affected thereby.

13. Entire Agreement. This Agreement, together with the Plan, constitutes the entire agreement and understanding between the parties hereto with respect to the subject matter hereof and supersedes all prior oral or written agreements and understandings relating to the subject matter hereof. No statement, representation, warranty, covenant or agreement not expressly set

9

forth in this Agreement shall affect or be used to interpret, change or restrict the express terms and provisions of this Agreement provided, however, in any event, this Agreement shall be subject to and governed by the Plan.

14. Modifications and Amendments; Waivers and Consents. The terms and provisions of this Agreement may be modified or amended as provided in the Plan. Except as provided in the Plan, the terms and provisions of this Agreement may be waived, or consent for the departure therefrom granted, only by written document executed by the party entitled to the benefits of such terms or provisions. No such waiver or consent shall be deemed to be or shall constitute a waiver or consent with respect to any other terms or provisions of this Agreement, whether or not similar. Each such waiver or consent shall be effective only in the specific instance and for the purpose for which it was given, and shall not constitute a continuing waiver or consent.

15. Consent of Spouse. If the Participant is married as of the date of this Agreement, the Participant's spouse shall execute a Consent of Spouse in the form of Exhibit A hereto, effective as of the date hereof. Such consent shall not be deemed to confer or convey to the spouse any rights in the Granted Shares that do not otherwise exist by operation of law or the agreement of the parties. If the Participant marries or remarries subsequent to the date hereof, the Participant shall, not later than 60 days thereafter, obtain his or her new spouse's acknowledgement of and consent to the existence and binding effect of all restrictions contained in this Agreement by such spouse's executing and delivering a Consent of Spouse in the form of Exhibit A.

16. Counterparts. This Agreement may be executed in one or more counterparts, and by different parties hereto on separate counterparts, each of which shall be deemed an original, but all of which together shall constitute one and the same instrument.

17. Data Privacy. By entering into this Agreement, the Participant: (i) authorizes the Company and each Affiliate, and any agent of the Company or any Affiliate administering the Plan or providing Plan record keeping services, to disclose to the Company or any of its Affiliates such information and data as the Company or any such Affiliate shall request in order to facilitate the grant of Shares and the administration of the Plan; (ii) waives any data privacy rights he or she may have with respect to such information; and (iii) authorizes the Company and each Affiliate to store and transmit such information in electronic form.

[THE NEXT PAGE IS THE SIGNATURE PAGE]

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IN WITNESS WHEREOF, the parties hereto have executed this Agreement as of the day and year first above written.

ALNYLAM HOLDING CO.

By:_________________________________
Name:
Title:

PARTICIPANT:


Print name:

11

EXHIBIT A

CONSENT OF SPOUSE

I, ____________________________, spouse of _____________________________, acknowledge that I have read the RESTRICTED STOCK AGREEMENT dated as of _______________, 200__ (the "Agreement") to which this Consent is attached as Exhibit A and that I know its contents. Capitalized terms used and not defined herein shall have the meanings assigned to such terms in the Agreement. I am aware that by its provisions the Granted Shares granted to my spouse pursuant to the Agreement are subject to a Lapsing Repurchase Right in favor of Alnylam Holding Co. (the "Company") and that, accordingly, the Company has the right to repurchase up to all of the Granted Shares of which I may become possessed as a result of a gift from my spouse or a court decree and/or any property settlement in any domestic litigation.

I hereby agree that my interest, if any, in the Granted Shares subject to the Agreement shall be irrevocably bound by the Agreement and further understand and agree that any community property interest I may have in the Granted Shares shall be similarly bound by the Agreement.

I agree to the Lapsing Repurchase Right described in the Agreement and I hereby consent to the repurchase of the Granted Shares by the Company and the sale of the Granted Shares by my spouse or my spouse's legal representative in accordance with the provisions of the Agreement. Further, as part of the consideration for the Agreement, I agree that at my death, if I have not disposed of any interest of mine in the Granted Shares by an outright bequest of the Granted Shares to my spouse, then the Company shall have the same rights against my legal representative to exercise its rights of repurchase with respect to any interest of mine in the Granted Shares as it would have had pursuant to the Agreement if I had acquired the Granted Shares pursuant to a court decree in domestic litigation.

I AM AWARE THAT THE LEGAL, FINANCIAL AND RELATED MATTERS CONTAINED IN THE AGREEMENT ARE COMPLEX AND THAT I AM FREE TO SEEK INDEPENDENT PROFESSIONAL GUIDANCE OR COUNSEL WITH RESPECT TO THIS CONSENT. I HAVE EITHER SOUGHT SUCH GUIDANCE OR COUNSEL OR DETERMINED AFTER REVIEWING THE AGREEMENT CAREFULLY THAT I WILL WAIVE SUCH RIGHT.

Dated as of the _______ day of ________________, 200__.


Print name:

A-1

EXHIBIT B

ELECTION TO INCLUDE GROSS INCOME IN YEAR
OF TRANSFER PURSUANT TO SECTION 83(b)
OF THE INTERNAL REVENUE CODE OF 1986, AS AMENDED

In accordance with Section 83(b) of the Internal Revenue Code of 1986, as amended (the "Code"), the undersigned hereby elects to include in his gross income as compensation for services the excess, if any, of the fair market value of the property (described below) at the time of transfer over the amount paid for such property.

The following sets for the information required in accordance with the Code and the regulations promulgated hereunder:

1. The name, address and social security number of the undersigned are:

Name:
Address:
Social Security No.:

2. The description of the property with respect to which the election is being made is as follows:

____________ (___) shares (the "Shares") of Common Stock, $.0001 par value per share, of Alnylam Holding Co, a Delaware corporation (the "Company").

3. This election is made for the calendar year ____, with respect to the transfer of the property to the Taxpayer on _________________.

4. Description of restrictions: The property is subject to the following restrictions:

In the event taxpayer's employment with the Company or an Affiliate is terminated, the Company may repurchase all or any portion of the Shares determined as set forth below at the acquisition price paid by the taxpayer:

A. If the termination takes place on or prior to ____________, the Purchase Option will apply to all of the Shares.

B. If the termination takes place after __________, 200_, the number of Shares to which the Purchase Option applies shall be ______________
(___) Shares less (i)______________________(___) Shares and (ii) ______________ (___) Shares for each period ending each _____, _____, _____ and _____ elapsed after _____________, 200_ if the taxpayer is employed by the Company or an Affiliate.

B-1

5. The fair market value at time of transfer (determined without regard to any restrictions other than restrictions which by their terms will never lapse) of the property with respect to which this election is being made was not more than $____ per Share.

6. The amount paid by taxpayer for said property was $___ per Share.

7. A copy of this statement has been furnished to the Company.

Signed this ____ day of ______, 200_.


Print Name:

B-2

Exhibit 10.3

ALNYLAM PHARMACEUTICALS, INC

2004 STOCK INCENTIVE PLAN

1. Purpose

The purpose of this 2004 Stock Incentive Plan (the "Plan") of Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company"), is to advance the interests of the Company's stockholders by enhancing the Company's ability to attract, retain and motivate persons who make (or are expected to make) important contributions to the Company by providing such persons with equity ownership opportunities and performance-based incentives and thereby better aligning the interests of such persons with those of the Company's stockholders. Except where the context otherwise requires, the term "Company" shall include any of the Company's present or future parent or subsidiary corporations as defined in Sections 424(e) or (f) of the Internal Revenue Code of 1986, as amended, and any regulations promulgated thereunder (the "Code") and any other business venture (including, without limitation, joint venture or limited liability company) in which the Company has a controlling interest, as determined by the Board of Directors of the Company (the "Board").

2. Eligibility

All of the Company's employees, officers, directors, consultants and advisors (including persons who have entered into an agreement with the Company under which they will be employed by the Company in the future) are eligible to be granted options or restricted stock awards (each, an "Award") under the Plan. Each person who has been granted an Award under the Plan shall be deemed a "Participant".

3. Administration and Delegation

(a) Administration by Board of Directors. The Plan will be administered by the Board. The Board shall have authority to grant Awards and to adopt, amend and repeal such administrative rules, guidelines and practices relating to the Plan as it shall deem advisable. The Board may correct any defect, supply any omission or reconcile any inconsistency in the Plan or any Award in the manner and to the extent it shall deem expedient to carry the Plan into effect and it shall be the sole and final judge of such expediency. All decisions by the Board shall be made in the Board's sole discretion and shall be final and binding on all persons having or claiming any interest in the Plan or in any Award. No director or person acting pursuant to the authority delegated by the Board shall be liable for any action or determination relating to or under the Plan made in good faith.

(b) Appointment of Committees. To the extent permitted by applicable law, the Board may delegate any or all of its powers under the Plan to one or more committees or subcommittees of the Board (a "Committee"). All references in the Plan to the "Board" shall mean the Board or a Committee of the Board or the officers referred to in Section 3(c) to the extent that the Board's powers or authority under the Plan have been delegated to such Committee or officers.


(c) Delegation to Officers. To the extent permitted by applicable law, the Board may delegate to one or more officers of the Company the power to grant Awards to employees or officers of the Company or any of its present or future subsidiary corporations and to exercise such other powers under the Plan as the Board may determine, provided that the Board shall fix the terms of the Awards to be granted by such officers (including the exercise price of such Awards, which may include a formula by which the exercise price will be determined) and the maximum number of shares subject to Awards that the officers may grant; provided further, however, that no officer shall be authorized to grant Awards to any "executive officer" of the Company (as defined by Rule 3b-7 under the Securities Exchange Act of 1934, as amended (the "Exchange Act")) or to any "officer" of the Company (as defined by Rule 16a-1 under the Exchange Act).

4. Stock Available for Awards

(a) Number of Shares. Subject to adjustment under Section 10, Awards may be made under the Plan for up to the number of shares of common stock, $0.0001 par value per share, of the Company (the "Common Stock") that is equal to the sum of:

(1) 1,578,947 shares of Common Stock; plus

(2) such additional number of shares of Common Stock (up to 2,451,315 shares) as is equal to the sum of (x) the number of shares of Common Stock reserved for issuance under the Company's 2002 and 2003 Employee, Director and Consultant Stock Plans (the "Existing Plans") that remain available for grant under the Existing Plans immediately prior to the closing of the Company's initial public offering and (y) the number of shares of Common Stock subject to awards granted under the Existing Plans which awards expire, terminate or are otherwise surrendered, canceled, forfeited or repurchased by the Company at their original issuance price pursuant to a contractual repurchase right (subject, however, in the case of Incentive Stock Options (as hereinafter defined) to any limitations of the Code); plus

(3) an annual increase to be added on the first day of each of the Company's fiscal years during the period beginning in fiscal year 2005 and ending on the second day of fiscal year 2014 equal to the lesser of (i) 2,631,578 shares of Common Stock, (ii) five percent (5%) of the outstanding shares on such date or (iii) an amount determined by the Board.

Notwithstanding the foregoing, no more than 13,157,894 shares of Common Stock (subject to adjustment under Section 8) may be issued pursuant to all Awards other than Options (each as hereinafter defined). Furthermore, notwithstanding clause (3) above, in no event shall the number of shares available under this Plan be increased as set forth in clause (3) to the extent such increase, in addition to any other increases proposed by the Board in the number of shares available for issuance under all other employee or director stock plans, would result in the total number of shares then available for issuance under all employee and director stock plans exceeding 25% of the outstanding shares of the Company on the first day of the applicable fiscal year.

If any Award expires or is terminated, surrendered or canceled without having been fully exercised or is forfeited in whole or in part (including as the result of shares of Common Stock

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subject to such Award being repurchased by the Company at the original issuance price pursuant to a contractual repurchase right) or results in any Common Stock not being issued, the unused Common Stock covered by such Award shall again be available for the grant of Awards under the Plan, subject, however, in the case of Incentive Stock Options (as hereinafter defined), to any limitations under the Code. Shares issued under the Plan may consist in whole or in part of authorized but unissued shares or treasury shares.

(b) Per-Participant Limit. Subject to adjustment under Section 10, the maximum number of shares of Common Stock with respect to which Awards may be granted to any Participant under the Plan shall be 526,315 per calendar year. The per-Participant limit described in this Section 4(b) shall be construed and applied consistently with Section 162(m) of the Code ("Section 162(m)").

5. Stock Options

(a) General. The Board may grant options to purchase Common Stock (each, an "Option") and determine the number of shares of Common Stock to be covered by each Option, the exercise price of each Option and the conditions and limitations applicable to the exercise of each Option, including conditions relating to applicable federal or state securities laws, as it considers necessary or advisable. An Option which is not intended to be an Incentive Stock Option (as hereinafter defined) shall be designated a "Nonstatutory Stock Option".

(b) Incentive Stock Options. An Option that the Board intends to be an "incentive stock option" as defined in Section 422 of the Code (an "Incentive Stock Option") shall only be granted to employees of Alnylam Pharmaceuticals, Inc., any of Alnylam Pharmaceuticals, Inc.'s present or future parent or subsidiary corporations as defined in Sections 424(e) or (f) of the Code, and any other entities the employees of which are eligible to receive Incentive Stock Options under the Code, and shall be subject to and shall be construed consistently with the requirements of Section 422 of the Code. The Company shall have no liability to a Participant, or any other party, if an Option (or any part thereof) that is intended to be an Incentive Stock Option is not an Incentive Stock Option.

(c) Exercise Price. The Board shall establish the exercise price at the time each Option is granted and specify it in the applicable option agreement; provided, however, that the exercise price shall be not less than 100% of the Fair Market Value (as hereinafter defined) at the time the Option is granted.

(d) Duration of Options. Each Option shall be exercisable at such times and subject to such terms and conditions as the Board may specify in the applicable option agreement; provided, however, that no Option will be granted for a term in excess of 10 years.

(e) Exercise of Option. Options may be exercised by delivery to the Company of a written notice of exercise signed by the proper person or by any other form of notice (including electronic notice) approved by the Board together with payment in full as specified in Section 5(f) for the number of shares for which the Option is exercised.

(f) Payment Upon Exercise. Common Stock purchased upon the exercise of an Option granted under the Plan shall be paid for as follows:

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(1) in cash or by check, payable to the order of the Company;

(2) except as the Board may otherwise provide in an option agreement, by (i) delivery of an irrevocable and unconditional undertaking by a creditworthy broker to deliver promptly to the Company sufficient funds to pay the exercise price and any required tax withholding or (ii) delivery by the Participant to the Company of a copy of irrevocable and unconditional instructions to a creditworthy broker to pay promptly to the Company the exercise price and any required tax withholding;

(3) if provided for in the option agreement or approved by the Company in its sole discretion, by delivery of shares of Common Stock owned by the Participant valued at their fair market value as determined by (or in a manner approved by) the Board ("Fair Market Value"), provided (i) such method of payment is then permitted under applicable law, (ii) such Common Stock, if acquired directly from the Company, was owned by the Participant at least six months prior to such delivery and (iii) such Common Stock is not subject to any repurchase, forfeiture, unfulfilled vesting or other similar requirements; or

(4) by any combination of the above permitted forms of payment.

6. Director Options.

(a) Initial Grant. Upon the commencement of service on the Board by any individual who is not then an employee of the Company or any subsidiary of the Company, the Company shall grant to such person a Nonstatutory Stock Option to purchase 7,105 shares of Common Stock (subject to adjustment under Section 8).

(b) Annual Grant. On the date of each annual meeting of stockholders of the Company, the Company shall grant a Nonstatutory Stock Option to purchase 5,263 shares of Common Stock (subject to adjustment under Section 8) to each member of the Board of Directors of the Company (1) who is both serving as a director of the Company immediately prior to and immediately following such annual meeting, (2) who is not then an employee of the Company or any of its subsidiaries, (3) who has served as a director of the Company for at least six months, (4) who does not beneficially own more than 1.5% of the outstanding capital stock of the Company on the date of such annual meeting and (5) who during the preceding full fiscal year has attended at least 75% of the aggregate of the (i) total number of meetings of the Board (held during the period for which he or she has been a director) and (ii) the total number of meetings held by all committees of the Board on which he or she served (during the periods that he or she served).

(c) Terms of Director Options. Options granted under this Section 6 shall
(i) have an exercise price equal to the last reported sale price of the Common Stock on The Nasdaq Stock

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Market or the national securities exchange on which the Common Stock is then traded on the date of grant (and if the Common Stock is not then traded on The Nasdaq Stock Market or a national securities exchange, the fair market value of the Common Stock on such date as determined by the Board), (ii) vest in full on the first anniversary of the date of grant provided that the individual is serving as a director on such date, (iii) expire on the earlier of 10 years from the date of grant or three months following termination of service as a director and (iv) contain such other terms and conditions as the Board shall determine.

(d) Board Discretion. The Board retains the specific authority to from time to time increase or decrease the number of shares subject to Options granted under this Section 6.

7. Restricted Stock

(a) Grants. The Board may grant Awards entitling recipients to acquire shares of Common Stock, subject to the right of the Company to repurchase all or part of such shares at their issue price or other stated or formula price (or to require forfeiture of such shares if issued at no cost) from the recipient in the event that conditions specified by the Board in the applicable Award are not satisfied prior to the end of the applicable restriction period or periods established by the Board for such Award (each, a "Restricted Stock Award").

(b) Terms and Conditions. The Board shall determine the terms and conditions of a Restricted Stock Award, including the conditions for repurchase (or forfeiture) and the issue price, if any.

(c) Stock Certificates. Any stock certificates issued in respect of a Restricted Stock Award shall be registered in the name of the Participant and, unless otherwise determined by the Board, deposited by the Participant, together with a stock power endorsed in blank, with the Company (or its designee). At the expiration of the applicable restriction periods, the Company (or such designee) shall deliver the certificates no longer subject to such restrictions to the Participant or if the Participant has died, to the beneficiary designated, in a manner determined by the Board, by a Participant to receive amounts due or exercise rights of the Participant in the event of the Participant's death (the "Designated Beneficiary"). In the absence of an effective designation by a Participant, "Designated Beneficiary" shall mean the Participant's estate.

8. Adjustments for Changes in Common Stock and Certain Other Events

(a) Changes in Capitalization. In the event of any stock split, reverse stock split, stock dividend, recapitalization, combination of shares, reclassification of shares, spin-off or other similar change in capitalization or event, or any distribution to holders of Common Stock other than an ordinary cash dividend, (i) the number and class of securities available under this Plan,
(ii) the amount of the annual increase in the number of securities available under this Plan set forth in Section 4(a)(3)(i); (iii) the limit on the number of securities available under this Plan for Awards other than Options set forth in Section 4(a), (iv) the per-Participant limit set forth in Section 4(b), (v) the number and class of securities and exercise price per share subject to each outstanding Option and each Option issuable under Section 6, and (vi) the repurchase price per share subject to each outstanding Restricted Stock Award, shall be appropriately adjusted by the

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Company (or substituted Awards may be made, if applicable) to the extent determined by the Board.

(b) Reorganization Events.

(1) Definition. A "Reorganization Event" shall mean: (a) any merger or consolidation of the Company with or into another entity as a result of which all of the Common Stock of the Company is converted into or exchanged for the right to receive cash, securities or other property, (b) any exchange of all of the Common Stock of the Company for cash, securities or other property pursuant to a share exchange transaction or (c) any liquidation or dissolution of the Company.

(2) Consequences of a Reorganization Event on Awards. In connection with a Reorganization Event, the Board shall take any one or more of the following actions as to all or any outstanding Awards on such terms as the Board determines: (i) provide that Awards shall be assumed, or substantially equivalent Awards shall be substituted, by the acquiring or succeeding corporation (or an affiliate thereof), (ii) upon written notice to a Participant, provide that the Participant's unexercised Options or other unexercised Awards shall become exercisable in full and will terminate immediately prior to the consummation of such Reorganization Event unless exercised by the Participant within a specified period following the date of such notice, (iii) in the event of a Reorganization Event under the terms of which holders of Common Stock will receive upon consummation thereof a cash payment for each share surrendered in the Reorganization Event (the "Acquisition Price"), make or provide for a cash payment to a Participant equal to (A) the Acquisition Price times the number of shares of Common Stock subject to the Participant's Options or other Awards (to the extent the exercise price does not exceed the Acquisition Price) minus (B) the aggregate exercise price of all such outstanding Options or other Awards, in exchange for the termination of such Options or other Awards, (iv) provide that outstanding Awards shall become realizable or deliverable, or restrictions applicable to an Award shall lapse, in whole or in part prior to or upon such Reorganization Event, (v) provide that, in connection with a liquidation or dissolution of the Company, Awards shall convert into the right to receive liquidation proceeds (if applicable, net of the exercise price thereof) and (vi) any combination of the foregoing.

For purposes of clause (i) above, an Option shall be considered assumed if, following consummation of the Reorganization Event, the Option confers the right to purchase, for each share of Common Stock subject to the Option immediately prior to the consummation of the Reorganization Event, the consideration (whether cash, securities or other property) received as a result of the Reorganization Event by holders of Common Stock for each share of Common Stock held immediately prior to the consummation of the Reorganization Event (and if holders were offered a choice of consideration, the type of consideration chosen by the holders of a majority of the outstanding shares of Common Stock); provided, however, that if the consideration received as a result of the Reorganization Event is not solely common stock of the acquiring or succeeding corporation (or an affiliate thereof), the Company may, with the consent of the acquiring or succeeding corporation, provide for the consideration to be received upon the exercise of Options to consist solely of common stock of the acquiring or succeeding corporation (or an affiliate thereof) equivalent in fair market value to the per share consideration

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received by holders of outstanding shares of Common Stock as a result of the Reorganization Event.

To the extent all or any portion of an Option becomes exercisable solely as a result of clause (ii) above, the Board may provide that upon exercise of such Option the Participant shall receive shares subject to a right of repurchase by the Company or its successor at the Option exercise price; such repurchase right (x) shall lapse at the same rate as the Option would have become exercisable under its terms and (y) shall not apply to any shares subject to the Option that were exercisable under its terms without regard to clause (ii) above.

Without limiting the generality of Sections 9(f) and 10(d) below, the Board shall have the right to amend this Section 8(b)(2) to the extent it deems necessary or advisable.

(3) Consequences of a Reorganization Event on Restricted Stock Awards. Upon the occurrence of a Reorganization Event other than a liquidation or dissolution of the Company, the repurchase and other rights of the Company under each outstanding Restricted Stock Award shall inure to the benefit of the Company's successor and shall apply to the cash, securities or other property which the Common Stock was converted into or exchanged for pursuant to such Reorganization Event in the same manner and to the same extent as they applied to the Common Stock subject to such Restricted Stock Award. Upon the occurrence of a Reorganization Event involving the liquidation or dissolution of the Company, except to the extent specifically provided to the contrary in the instrument evidencing any Restricted Stock Award or any other agreement between a Participant and the Company, all restrictions and conditions on all Restricted Stock Awards then outstanding shall automatically be deemed terminated or satisfied.

9. General Provisions Applicable to Awards

(a) Transferability of Awards. Except as the Board may otherwise determine or provide in an Award, Awards shall not be sold, assigned, transferred, pledged or otherwise encumbered by the person to whom they are granted, either voluntarily or by operation of law, except by will or the laws of descent and distribution or, other than in the case of an Option intended to be an Incentive Stock Option, pursuant to a qualified domestic relations order, and, during the life of the Participant, shall be exercisable only by the Participant. References to a Participant, to the extent relevant in the context, shall include references to authorized transferees.

(b) Documentation. Each Award shall be evidenced in such form (written, electronic or otherwise) as the Board shall determine. Each Award may contain terms and conditions in addition to those set forth in the Plan.

(c) Board Discretion. Except as otherwise provided by the Plan, each Award may be made alone or in addition or in relation to any other Award. The terms of each Award need not be identical, and the Board need not treat Participants uniformly.

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(d) Termination of Status. The Board shall determine the effect on an Award of the disability, death, retirement, authorized leave of absence or other change in the employment or other status of a Participant and the extent to which, and the period during which, the Participant, or the Participant's legal representative, conservator, guardian or Designated Beneficiary may exercise rights under the Award.

(e) Withholding. Each Participant shall pay to the Company, or make provision satisfactory to the Company for payment of, any taxes required by law to be withheld in connection with an Award to such Participant. Except as the Board may otherwise provide in an Award, for so long as the Common Stock is registered under the Exchange Act, Participants may satisfy such tax obligations in whole or in part by delivery of shares of Common Stock, including shares retained from the Award creating the tax obligation, valued at their Fair Market Value; provided, however, that the total tax withholding where stock is being used to satisfy such tax obligations cannot exceed the Company's minimum statutory withholding obligations (based on minimum statutory withholding rates for federal and state tax purposes, including payroll taxes, that are applicable to such supplemental taxable income). Shares surrendered to satisfy tax withholding requirements cannot be subject to any repurchase, forfeiture, unfulfilled vesting or other similar requirements. The Company may, to the extent permitted by law, deduct any such tax obligations from any payment of any kind otherwise due to a Participant.

(f) Amendment of Award. The Board may amend, modify or terminate any outstanding Award, including but not limited to, substituting therefor another Award of the same or a different type, changing the date of exercise or realization, and converting an Incentive Stock Option to a Nonstatutory Stock Option, provided that the Participant's consent to such action shall be required unless the Board determines that the action, taking into account any related action, would not materially and adversely affect the Participant.

(g) Conditions on Delivery of Stock. The Company will not be obligated to deliver any shares of Common Stock pursuant to the Plan or to remove restrictions from shares previously delivered under the Plan until (i) all conditions of the Award have been met or removed to the satisfaction of the Company, (ii) in the opinion of the Company's counsel, all other legal matters in connection with the issuance and delivery of such shares have been satisfied, including any applicable securities laws and any applicable stock exchange or stock market rules and regulations, and (iii) the Participant has executed and delivered to the Company such representations or agreements as the Company may consider appropriate to satisfy the requirements of any applicable laws, rules or regulations.

(h) Acceleration. The Board may at any time provide that any Award shall become immediately exercisable in full or in part, free of some or all restrictions or conditions, or otherwise realizable in full or in part, as the case may be.

(i) Deferrals. The Board may permit Participants to defer receipt of any Common Stock issuable upon exercise of an Option or upon the lapse of any restriction applicable to any Restricted Stock Award, subject to such rules and procedures as it may establish.

(j) Share Issuance. To the extent that the Plan provides for issuance of stock certificates to reflect the issuance of shares of Common Stock or Restricted Stock, the Board

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may provide for the issuance of such shares on a non-certificated basis, to the extent not prohibited by applicable law or the rules of any stock exchange on which the Common Stock is traded.

10. Miscellaneous

(a) No Right To Employment or Other Status. No person shall have any claim or right to be granted an Award, and the grant of an Award shall not be construed as giving a Participant the right to continued employment or any other relationship with the Company. The Company expressly reserves the right at any time to dismiss or otherwise terminate its relationship with a Participant free from any liability or claim under the Plan, except as expressly provided in the applicable Award.

(b) No Rights As Stockholder. Subject to the provisions of the applicable Award, no Participant or Designated Beneficiary shall have any rights as a stockholder with respect to any shares of Common Stock to be distributed with respect to an Award until becoming the record holder of such shares. Notwithstanding the foregoing, in the event the Company effects a split of the Common Stock by means of a stock dividend and the exercise price of and the number of shares subject to such Option are adjusted as of the date of the distribution of the dividend (rather than as of the record date for such dividend), then an optionee who exercises an Option between the record date and the distribution date for such stock dividend shall be entitled to receive, on the distribution date, the stock dividend with respect to the shares of Common Stock acquired upon such Option exercise, notwithstanding the fact that such shares were not outstanding as of the close of business on the record date for such stock dividend.

(c) Effective Date and Term of Plan. The Plan shall become effective on the date on which it is adopted by the Board, but no Award may be granted unless and until the Plan has been approved by the Company's stockholders. No Awards shall be granted under the Plan after the completion of 10 years from the earlier of (i) the date on which the Plan was adopted by the Board or (ii) the date the Plan was approved by the Company's stockholders, but Awards previously granted may extend beyond that date.

(d) Amendment of Plan. The Board may amend, suspend or terminate the Plan or any portion thereof at any time; provided that, to the extent determined by the Board, no amendment requiring stockholder approval under any applicable legal, regulatory or listing requirement shall become effective until such stockholder approval is obtained. No Award shall be made that is conditioned upon stockholder approval of any amendment to the Plan.

(e) Provisions for Foreign Participants. The Board may, without amending the Plan, modify Awards or Options granted to Participants who are foreign nationals or employed outside the United States or establish subplans under the Plan to recognize differences in laws, rules, regulations or customs of such foreign jurisdictions with respect to tax, securities, currency, employee benefit or other matters.

(f) Governing Law. The provisions of the Plan and all Awards made hereunder shall be governed by and interpreted in accordance with the laws of the State of Delaware, without regard to any applicable conflicts of law.

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ALNYLAM PHARMACEUTICALS, INC.

Incentive Stock Option Agreement
Granted Under 2004 Stock Incentive Plan

1. Grant of Option.

This agreement evidences the grant by Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company"), on ________, 200[ ] (the "Grant Date") to
[_______ ], an employee of the Company (the "Participant"), of an option to purchase, in whole or in part, on the terms provided herein and in the Company's 2004 Stock Incentive Plan (the "Plan"), a total of [_______] shares (the "Shares") of common stock, $.0001 par value per share, of the Company ("Common Stock") at $[________] per Share. Unless earlier terminated, this option shall expire at 5:00 p.m., Eastern time, on [_______] (the "Final Exercise Date").

It is intended that the option evidenced by this agreement shall be an incentive stock option as defined in Section 422 of the Internal Revenue Code of 1986, as amended, and any regulations promulgated thereunder (the "Code"). Except as otherwise indicated by the context, the term "Participant", as used in this option, shall be deemed to include any person who acquires the right to exercise this option validly under its terms.

2. Vesting Schedule.

This option will become exercisable ("vest") as to 25% of the original number of Shares on the first anniversary of the Grant Date and as to an additional 6.25% of the original number of Shares at the end of each successive three-month period following the first anniversary of the Grant Date until the fourth anniversary of the Grant Date.

The right of exercise shall be cumulative so that to the extent the option is not exercised in any period to the maximum extent permissible it shall continue to be exercisable, in whole or in part, with respect to all Shares for which it is vested until the earlier of the Final Exercise Date or the termination of this option under Section 3 hereof or the Plan.

3. Exercise of Option.

(a) Form of Exercise. Each election to exercise this option shall be in writing, signed by the Participant, and received by the Company at its principal office, accompanied by this agreement, and payment in full in the manner provided in the Plan. The Participant may purchase less than the number of shares covered hereby, provided that no partial exercise of this option may be for any fractional share or for fewer than ten whole shares.

(b) Continuous Relationship with the Company Required. Except as otherwise provided in this Section 3, this option may not be exercised unless the Participant, at the time he or she exercises this option, is, and has been at all times since the Grant Date, an employee or officer of, or consultant or advisor to, the Company or any parent or subsidiary of the Company as defined in
Section 424(e) or (f) of the Code (an "Eligible Participant").


(c) Termination of Relationship with the Company. If the Participant ceases to be an Eligible Participant for any reason, then, except as provided in paragraphs (d) and (e) below, the right to exercise this option shall terminate three months after such cessation (but in no event after the Final Exercise Date), provided that this option shall be exercisable only to the extent that the Participant was entitled to exercise this option on the date of such cessation. Notwithstanding the foregoing, if the Participant, prior to the Final Exercise Date, violates the non-competition or confidentiality provisions of any employment contract, confidentiality and nondisclosure agreement or other agreement between the Participant and the Company, the right to exercise this option shall terminate immediately upon such violation.

(d) Exercise Period Upon Death or Disability. If the Participant dies or becomes disabled (within the meaning of Section 22(e)(3) of the Code) prior to the Final Exercise Date while he or she is an Eligible Participant and the Company has not terminated such relationship for "cause" as specified in paragraph (e) below, this option shall be exercisable, within the period of one year following the date of death or disability of the Participant, by the Participant (or in the case of death by an authorized transferee), provided that this option shall be exercisable only to the extent that this option was exercisable by the Participant on the date of his or her death or disability, and further provided that this option shall not be exercisable after the Final Exercise Date.

(e) Discharge for Cause. If the Participant, prior to the Final Exercise Date, is discharged by the Company for "cause" (as defined below), the right to exercise this option shall terminate immediately upon the effective date of such discharge. "Cause" shall mean willful misconduct by the Participant or willful failure by the Participant to perform his or her responsibilities to the Company (including, without limitation, breach by the Participant of any provision of any employment, consulting, advisory, nondisclosure, non-competition or other similar agreement between the Participant and the Company), as determined by the Company, which determination shall be conclusive. The Participant shall be considered to have been discharged for "Cause" if the Company determines, within 30 days after the Participant's resignation, that discharge for cause was warranted.

4. Tax Matters.

(a) Withholding. No Shares will be issued pursuant to the exercise of this option unless and until the Participant pays to the Company, or makes provision satisfactory to the Company for payment of, any federal, state or local withholding taxes required by law to be withheld in respect of this option.

(b) Disqualifying Disposition. If the Participant disposes of Shares acquired upon exercise of this option within two years from the Grant Date or one year after such Shares were acquired pursuant to exercise of this option, the Participant shall notify the Company in writing of such disposition.

5. Nontransferability of Option.

This option may not be sold, assigned, transferred, pledged or otherwise encumbered by the Participant, either voluntarily or by operation of law, except by will or the laws of descent

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and distribution, and, during the lifetime of the Participant, this option shall be exercisable only by the Participant.

6. Provisions of the Plan.

This option is subject to the provisions of the Plan, a copy of which is furnished to the Participant with this option.

IN WITNESS WHEREOF, the Company has caused this option to be executed under its corporate seal by its duly authorized officer. This option shall take effect as a sealed instrument.

ALNYLAM PHARMACEUTICALS, INC.

Dated: _________                          By: __________________________________

                                               Name:  __________________________
                                               Title: __________________________

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PARTICIPANT'S ACCEPTANCE

The undersigned hereby accepts the foregoing option and agrees to the terms and conditions thereof. The undersigned hereby acknowledges receipt of a copy of the Company's 2004 Stock Incentive Plan.

PARTICIPANT:


Address: _______________________________


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ALNYLAM PHARMACEUTICALS, INC.

Nonstatutory Stock Option Agreement
Granted Under 2004 Stock Incentive Plan

1. Grant of Option.

This agreement evidences the grant by Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company"), on _______, 200[ ] (the "Grant Date") to
[________], an [employee], [consultant], [director] of the Company (the "Participant"), of an option to purchase, in whole or in part, on the terms provided herein and in the Company's 2004 Stock Incentive Plan (the "Plan"), a total of [_______] shares (the "Shares") of common stock, $.0001 par value per share, of the Company ("Common Stock") at $[________] per Share. Unless earlier terminated, this option shall expire at 5:00 p.m., Eastern time, on [_______] (the "Final Exercise Date").

It is intended that the option evidenced by this agreement shall not be an incentive stock option as defined in Section 422 of the Internal Revenue Code of 1986, as amended, and any regulations promulgated thereunder (the "Code"). Except as otherwise indicated by the context, the term "Participant", as used in this option, shall be deemed to include any person who acquires the right to exercise this option validly under its terms.

2. Vesting Schedule.

This option will become exercisable ("vest") as to 25% of the original number of Shares on the first anniversary of the Grant Date and as to an additional 6.25% of the original number of Shares at the end of each successive three-month period following the first anniversary of the Grant Date until the fourth anniversary of the Grant Date.

The right of exercise shall be cumulative so that to the extent the option is not exercised in any period to the maximum extent permissible it shall continue to be exercisable, in whole or in part, with respect to all Shares for which it is vested until the earlier of the Final Exercise Date or the termination of this option under Section 3 hereof or the Plan.

3. Exercise of Option.

(a) Form of Exercise. Each election to exercise this option shall be in writing, signed by the Participant, and received by the Company at its principal office, accompanied by this agreement, and payment in full in the manner provided in the Plan. The Participant may purchase less than the number of shares covered hereby, provided that no partial exercise of this option may be for any fractional share or for fewer than ten whole shares.

(b) Continuous Relationship with the Company Required. Except as otherwise provided in this Section 3, this option may not be exercised unless the Participant, at the time he or she exercises this option, is, and has been at all times since the Grant Date, an [employee or officer of], or consultant or advisor to, the Company or any other entity the employees, officers,


directors, consultants, or advisors of which are eligible to receive option grants under the Plan (an "Eligible Participant").

(c) Termination of Relationship with the Company. If the Participant ceases to be an Eligible Participant for any reason, then, except as provided in paragraphs (d) and (e) below, the right to exercise this option shall terminate three months after such cessation (but in no event after the Final Exercise Date), provided that this option shall be exercisable only to the extent that the Participant was entitled to exercise this option on the date of such cessation. Notwithstanding the foregoing, if the Participant, prior to the Final Exercise Date, violates the non-competition or confidentiality provisions of any employment contract, confidentiality and nondisclosure agreement or other agreement between the Participant and the Company, the right to exercise this option shall terminate immediately upon such violation.

(d) Exercise Period Upon Death or Disability. If the Participant dies or becomes disabled (within the meaning of Section 22(e)(3) of the Code) prior to the Final Exercise Date while he or she is an Eligible Participant and the Company has not terminated such relationship for "cause" as specified in paragraph (e) below, this option shall be exercisable, within the period of one year following the date of death or disability of the Participant, by the Participant (or in the case of death by an authorized transferee), provided that this option shall be exercisable only to the extent that this option was exercisable by the Participant on the date of his or her death or disability, and further provided that this option shall not be exercisable after the Final Exercise Date.

(e) Discharge for Cause. If the Participant, prior to the Final Exercise Date, is discharged by the Company for "cause" (as defined below), the right to exercise this option shall terminate immediately upon the effective date of such discharge. "Cause" shall mean willful misconduct by the Participant or willful failure by the Participant to perform his or her responsibilities to the Company (including, without limitation, breach by the Participant of any provision of any employment, consulting, advisory, nondisclosure, non-competition or other similar agreement between the Participant and the Company), as determined by the Company, which determination shall be conclusive. The Participant shall be considered to have been discharged for "Cause" if the Company determines, within 30 days after the Participant's resignation, that discharge for cause was warranted.

4. Withholding.

No Shares will be issued pursuant to the exercise of this option unless and until the Participant pays to the Company, or makes provision satisfactory to the Company for payment of, any federal, state or local withholding taxes required by law to be withheld in respect of this option.

5. Nontransferability of Option.

This option may not be sold, assigned, transferred, pledged or otherwise encumbered by the Participant, either voluntarily or by operation of law, except by will or the laws of descent and distribution, and, during the lifetime of the Participant, this option shall be exercisable only by the Participant.

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6. Provisions of the Plan.

This option is subject to the provisions of the Plan, a copy of which is furnished to the Participant with this option.

IN WITNESS WHEREOF, the Company has caused this option to be executed under its corporate seal by its duly authorized officer. This option shall take effect as a sealed instrument.

ALNYLAM PHARMACEUTICALS, INC.

Dated: _________                           By: _________________________________

                                                 Name:  ________________________
                                                 Title: ________________________

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PARTICIPANT'S ACCEPTANCE

The undersigned hereby accepts the foregoing option and agrees to the terms and conditions thereof. The undersigned hereby acknowledges receipt of a copy of the Company's 2004 Stock Incentive Plan.

PARTICIPANT:


Address: ________________________

Exhibit 10.4

ALNYLAM PHARMACEUTICALS, INC.

2004 EMPLOYEE STOCK PURCHASE PLAN

The purpose of this Plan is to provide eligible employees of Alnylam Pharmaceuticals, Inc., a Delaware corporation (the "Company"), and certain of its subsidiaries with opportunities to purchase shares of the Company's common stock, $.0001 par value (the "Common Stock"). An aggregate of 315,789 shares of Common Stock have been approved for this purpose. This Plan is intended to qualify as an "employee stock purchase plan" as defined in Section 423 of the Internal Revenue Code of 1986, as amended (the "Code"), and the regulations promulgated thereunder, and shall be interpreted consistent therewith.

1. Administration. The Plan will be administered by the Company's Board of Directors (the "Board") or by a Committee appointed by the Board (the "Committee"). The Board or the Committee has authority to make rules and regulations for the administration of the Plan and its interpretation and decisions with regard thereto shall be final and conclusive.

2. Eligibility. All employees of the Company and all employees of any subsidiary of the Company (as defined in Section 424(f) of the Code) designated by the Board or the Committee from time to time (a "Designated Subsidiary"), are eligible to participate in any one or more of the offerings of Options (as defined in Section 9) to purchase Common Stock under the Plan provided that:

(a) they are customarily employed by the Company or a Designated Subsidiary for more than twenty (20) hours a week and for more than five (5) months in a calendar year; and

(b) they have been employed by the Company or a Designated Subsidiary for at least six (6) months prior to enrolling in the Plan;

(c) they are employees of the Company or a Designated Subsidiary on the first day of the applicable Plan Period (as defined below); and

(d) in the case of an executive officer of the Company or a Designated Subsidiary, they are not considered a "highly compensated individual" within the meaning of Section 414(q) of the Code.

No employee may be granted an option hereunder if such employee, immediately after the option is granted, owns 5% or more of the total combined voting power or value of the stock of the Company or any subsidiary. For purposes of the preceding sentence, the attribution rules of Section 424(d) of the Code shall apply in determining the stock ownership of an employee, and all stock which the employee has a contractual right to purchase shall be treated as stock owned by the employee.

3. Offerings. The Company will make one or more offerings ("Offerings") to employees to purchase stock under this Plan. Offerings will begin each November 1 or the first


business day thereafter (the "Offering Commencement Dates"). Each Offering Commencement Date will begin a twelve-month period (a "Plan Period") during which payroll deductions will be made and held for the purchase of Common Stock at the end of the Plan Period. The Board or the Committee may, at its discretion, choose a different Plan Period of twelve (12) months or less for subsequent Offerings. Notwithstanding anything to the contrary, the first Plan Period shall begin on the later of November 1, 2004 or the first date that the Common Stock is publicly traded following the Company's IPO (the "IPO Date"), and shall end on October 31, 2005.

4. Participation. An employee eligible on the Offering Commencement Date of any Offering may participate in such Offering by completing and forwarding a payroll deduction authorization form to the employee's appropriate payroll office at least five (5) business days prior to the applicable Offering Commencement Date. The form will authorize a regular payroll deduction from the Compensation received by the employee during the Plan Period. Unless an employee files a new form or withdraws from the Plan, his deductions and purchases will continue at the same rate for future Offerings under the Plan as long as the Plan remains in effect. The term "Compensation" means the amount of money reportable on the employee's Federal Income Tax Withholding Statement, excluding overtime, shift premium, incentive or bonus awards, allowances and reimbursements for expenses such as relocation allowances for travel expenses, income or gains on the exercise of Company stock options or stock appreciation rights, amounts imputed in respect of benefit programs and similar items, whether or not shown on the employee's Federal Income Tax Withholding Statement, but including, in the case of salespersons, sales commissions to the extent determined by the Board or the Committee.

5. Deductions. The Company will maintain payroll deduction accounts for all participating employees. With respect to any Offering made under this Plan, an employee may authorize a payroll deduction in any dollar amount up to a maximum of 15% of the Compensation he or she receives during the Plan Period or such shorter period during which deductions from payroll are made. Payroll deductions may be at the rate of 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, 13%, 14% or 15% of Compensation with any change in compensation during the Plan Period to result in an automatic corresponding change in the dollar amount withheld. The minimum payroll deduction is such percentage of compensation as may be established from time to time by the Board or the Committee.

6. Deduction Changes. An employee may decrease or discontinue his payroll deduction once during any Plan Period, by filing a new payroll deduction authorization form. However, an employee may not increase his payroll deduction during a Plan Period. If an employee elects to discontinue his payroll deductions during a Plan Period, but does not elect to withdraw his funds pursuant to Section 8 hereof, funds deducted prior to his election to discontinue will be applied to the purchase of Common Stock on the Exercise Date (as defined below).

7. Interest. Interest will not be paid on any employee accounts.

8. Withdrawal of Funds. An employee may at any time prior to the close of business on the last business day in a Plan Period and for any reason permanently draw out the balance accumulated in the employee's account and thereby withdraw from participation in an Offering. Partial withdrawals are not permitted. The employee may not begin participation again during

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the remainder of the Plan Period. The employee may participate in any subsequent Offering in accordance with terms and conditions established by the Board or the Committee.

9. Purchase of Shares. On the Offering Commencement Date of each Plan Period, the Company will grant to each eligible employee who is then a participant in the Plan an option ("Option") to purchase on the last business day of such Plan Period (the "Exercise Date"), at the Option Price hereinafter provided for, the largest number of whole shares of Common Stock of the Company as does not exceed the number of shares determined by multiplying $2,083 by the number of full months in the Offering Period and dividing the result by the closing price (as defined below) on the Offering Commencement Date of such Plan Period.

Notwithstanding the above, no employee may be granted an Option (as defined in Section 9) which permits his rights to purchase Common Stock under this Plan and any other employee stock purchase plan (as defined in Section 423(b) of the Code) of the Company and its subsidiaries, to accrue at a rate which exceeds $25,000 of the fair market value of such Common Stock (determined at the Offering Commencement Date of the Plan Period) for each calendar year in which the Option is outstanding at any time.

The purchase price for each share purchased will be 85% of the closing price of the Common Stock on (i) the first business day of such Plan Period or
(ii) the Exercise Date, whichever closing price shall be less. Such closing price shall be (a) the closing price on any national securities exchange on which the Common Stock is listed, (b) the closing price of the Common Stock on the Nasdaq National Market or (c) the average of the closing bid and asked prices in the over-the-counter-market, whichever is applicable, as published in The Wall Street Journal; provided that, with respect to the first Plan Period, if the first day of such Plan Period is the IPO Date, the closing price of the Common Stock on the first business day of such Plan Period shall be deemed to be the initial public offering price for the Common Stock, as set forth in the final prospectus relating to the IPO. If no sales of Common Stock were made on such a day, the price of the Common Stock for purposes of clauses (a) and (b) above shall be the reported price for the next preceding day on which sales were made.

Each employee who continues to be a participant in the Plan on the Exercise Date shall be deemed to have exercised his Option at the Option Price on such date and shall be deemed to have purchased from the Company the number of full shares of Common Stock reserved for the purpose of the Plan that his accumulated payroll deductions on such date will pay for, but not in excess of the maximum number determined in the manner set forth above.

Any balance remaining in an employee's payroll deduction account at the end of a Plan Period will be automatically refunded to the employee, except that any balance which is less than the purchase price of one share of Common Stock will be carried forward into the employee's payroll deduction account for the following Offering, unless the employee elects not to participate in the following Offering under the Plan, in which case the balance in the employee's account shall be refunded.

10. Issuance of Certificates. Certificates representing shares of Common Stock purchased under the Plan may be issued only in the name of the employee, in the name of the employee and another person of legal age as joint tenants with rights of survivorship, or (in the

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Company's sole discretion) in the name of a brokerage firm, bank or other nominee holder designated by the employee. The Company may, in its sole discretion and in compliance with applicable laws, authorize the use of book entry registration of shares in lieu of issuing stock certificates.

11. Rights on Retirement, Death or Termination of Employment. In the event of a participating employee's termination of employment prior to the last business day of a Plan Period, no payroll deduction shall be taken from any pay due and owing to an employee and the balance in the employee's account shall be paid to the employee or, in the event of the employee's death, (a) to a beneficiary previously designated in a revocable notice signed by the employee (with any spousal consent required under state law) or (b) in the absence of such a designated beneficiary, to the executor or administrator of the employee's estate or (c) if no such executor or administrator has been appointed to the knowledge of the Company, to such other person(s) as the Company may, in its discretion, designate. If, prior to the last business day of the Plan Period, the Designated Subsidiary by which an employee is employed shall cease to be a subsidiary of the Company, or if the employee is transferred to a subsidiary of the Company that is not a Designated Subsidiary, the employee shall be deemed to have terminated employment for the purposes of this Plan.

12. Optionees Not Stockholders. Neither the granting of an Option to an employee nor the deductions from his pay shall constitute such employee a stockholder of the shares of Common Stock covered by an Option under this Plan until such shares have been purchased by and issued to him.

13. Rights Not Transferable. Rights under this Plan are not transferable by a participating employee other than by will or the laws of descent and distribution, and are exercisable during the employee's lifetime only by the employee.

14. Application of Funds. All funds received or held by the Company under this Plan may be combined with other corporate funds and may be used for any corporate purpose.

15. Adjustment in Case of Changes Affecting Common Stock. In the event of a subdivision of outstanding shares of Common Stock, or the payment of a dividend in Common Stock, the number of shares approved for this Plan, and the share limitation set forth in Section 9, shall be increased proportionately, and such other adjustment shall be made as may be deemed equitable by the Board or the Committee. In the event of any other change affecting the Common Stock, such adjustment shall be made as may be deemed equitable by the Board or the Committee to give proper effect to such event.

16. Merger. If the Company shall at any time merge or consolidate with another corporation and the holders of the capital stock of the Company immediately prior to such merger or consolidation continue to hold at least a majority by voting power of the capital stock of the surviving corporation ("Continuity of Control"), the holder of each Option then outstanding will thereafter be entitled to receive at the next Exercise Date upon the exercise of such Option for each share as to which such Option shall be exercised the securities or property which a holder of one share of the Common Stock was entitled to upon and at the time of such merger or consolidation, and the Board or the Committee shall take such steps in connection with

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such merger or consolidation as the Board or the Committee shall deem necessary to assure that the provisions of Section 15 shall thereafter be applicable, as nearly as reasonably may be, in relation to the said securities or property as to which such holder of such Option might thereafter be entitled to receive thereunder.

In the event of a merger or consolidation of the Company with or into another corporation which does not involve Continuity of Control, or of a sale of all or substantially all of the assets of the Company while unexercised Options remain outstanding under the Plan, (a) subject to the provisions of clauses (b) and (c), after the effective date of such transaction, each holder of an outstanding Option shall be entitled, upon exercise of such Option, to receive in lieu of shares of Common Stock, shares of such stock or other securities as the holders of shares of Common Stock received pursuant to the terms of such transaction; or (b) all outstanding Options may be cancelled by the Board or the Committee as of a date prior to the effective date of any such transaction and all payroll deductions shall be paid out to the participating employees; or (c) all outstanding Options may be cancelled by the Board or the Committee as of the effective date of any such transaction, provided that notice of such cancellation shall be given to each holder of an Option, and each holder of an Option shall have the right to exercise such Option in full based on payroll deductions then credited to his account as of a date determined by the Board or the Committee, which date shall not be less than ten (10) days preceding the effective date of such transaction.

17. Amendment of the Plan. The Board may at any time, and from time to time, amend this Plan in any respect, except that (a) if the approval of any such amendment by the shareholders of the Company is required by Section 423 of the Code, such amendment shall not be effected without such approval, and (b) in no event may any amendment be made which would cause the Plan to fail to comply with Section 423 of the Code.

18. Insufficient Shares. In the event that the total number of shares of Common Stock specified in elections to be purchased under any Offering plus the number of shares purchased under previous Offerings under this Plan exceeds the maximum number of shares issuable under this Plan, the Board or the Committee will allot the shares then available on a pro rata basis.

19. Termination of the Plan. This Plan may be terminated at any time by the Board. Upon termination of this Plan all amounts in the accounts of participating employees shall be promptly refunded.

20. Governmental Regulations. The Company's obligation to sell and deliver Common Stock under this Plan is subject to listing on a national stock exchange or quotation on the Nasdaq National Market (to the extent the Common Stock is then so listed or quoted) and the approval of all governmental authorities required in connection with the authorization, issuance or sale of such stock.

21. Governing Law. The Plan shall be governed by Delaware law except to the extent that such law is preempted by federal law.

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22. Issuance of Shares. Shares may be issued upon exercise of an Option from authorized but unissued Common Stock, from shares held in the treasury of the Company, or from any other proper source.

23. Notification upon Sale of Shares. Each employee agrees, by entering the Plan, to promptly give the Company notice of any disposition of shares purchased under the Plan where such disposition occurs within two (2) years after the date of grant of the Option pursuant to which such shares were purchased.

24. Special Provisions for First Plan Period. If the first day of the first Plan Period is the IPO Date, the following provisions of this Section 24 shall apply with respect to the first Plan Period notwithstanding any provision of the Plan to the contrary:

(a) Every eligible employee shall automatically become a participant in the Plan for the first Plan Period at the highest percentage of Compensation permitted under Section 5. No payroll deductions shall be required for the first Plan Period; however, a participant may, at any time after the effectiveness of the Plan's Registration Statement on Form S-8, elect to have payroll deductions up to the aggregate amount which would have been credited to his or her account if a deduction of fifteen percent (15%) of the Compensation which he or she received on each pay day during the first Plan Period had been made (the "Maximum Amount") or decline to participate by filing an appropriate subscription agreement.

(b) Upon the automatic exercise of a participant's option on the Exercise Date for the first Plan Period, a participant shall be permitted to purchase shares with (i) the accumulated payroll deductions in his or her account, if any, (ii) a direct payment from the participant, or (iii) a combination thereof; provided, however that the total amount applied to the purchase may not exceed the Maximum Amount.

25. Withholding. Each employee shall, no later than the date of the event creating the tax liability, make provision satisfactory to the Board for payment of any taxes required by law to be withheld in connection with any transaction related to Options granted to or shares acquired by such employee pursuant to the Plan. The Company may, to the extent permitted by law, deduct any such taxes from any payment of any kind otherwise due to an employee.

26. Effective Date and Approval of Shareholders. The Plan shall take effect on the IPO Date, subject to approval by the shareholders of the Company as required by Section 423 of the Code, which approval must occur within twelve months of the adoption of the Plan by the Board.

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Exhibit 23.1

CONSENT OF INDEPENDENT ACCOUNTANTS

We hereby consent to the use in this Registration Statement on Form S-1 of our report dated February 27, 2004, except for Note 15, as to which the date is May 7, 2004, relating to the consolidated financial statements of Alnylam Pharmaceuticals, Inc., which appears in such Registration Statement. We also consent to the references to us under the headings "Experts" and "Selected Condensed Consolidated Financial Data" in such Registration Statement.

/s/ PricewaterhouseCoopers LLP



Boston, Massachusetts
May 7, 2004


Exhibit 23.2

CONSENT OF INDEPENDENT ACCOUNTANTS

We hereby consent to the use in this Registration Statement on Form S-1 of our report dated December 23, 2003 relating to the financial statements of Ribopharma AG, which appears in such Registration Statement. We also consent to the reference to us under the headings "Experts" in such Registration Statement.

PricewaterhouseCoopers
Gesellschaft mit beschrankter Haftung
Wirtschaftsprufungsgesellschaft

/s/ Price                            /s/ McMahon
-----------------------------        -----------------------------
Chartered Accountant                 Chartered Accountant

Munich, April 28, 2004