QuickLinks -- Click here to rapidly navigate through this document

As filed with the Securities and Exchange Commission on June 17, 2004

Registration No. 333-113998



UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549


Amendment No. 5
to
FORM S-1
REGISTRATION STATEMENT
UNDER
THE SECURITIES ACT OF 1933


SENOMYX, INC.
(Exact name of registrant as specified in its charter)

Delaware
(State or other jurisdiction of
incorporation or organization)
  8731
(Primary Standard Industrial
Classification Code Number)
  33-0843840
(I.R.S. Employer
Identification Number)

11099 North Torrey Pines Road
La Jolla, CA 92037
(858) 646-8300
(Address, including zip code, and telephone number, including
area code, of registrant's principal executive offices)


Kent Snyder
President and Chief Executive Officer
Senomyx, Inc.
11099 North Torrey Pines Road
La Jolla, CA 92037
(858) 646-8300
(Name, address, including zip code, and telephone number, including area code, of agent for service)




Copies to:
Thomas A. Coll, Esq.   David C. Lopez, Esq.
Steven M. Przesmicki, Esq.   Cleary, Gottlieb, Steen & Hamilton
Cooley Godward LLP   One Liberty Plaza
4401 Eastgate Mall   New York, NY 10006
San Diego, CA 92121   (212) 225-2000
(858) 550-6000    

Approximate date of commencement of proposed sale to the public:
As soon as practicable after the effective date of this Registration Statement.


        If any of the securities being registered on this form are to be offered on a delayed or continuous basis pursuant to Rule 415 under the Securities Act, check the following box.     o

        If this form is filed to register additional securities for an offering pursuant to Rule 462(b) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o

        If this form is a post-effective amendment filed pursuant to Rule 462(c) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o

        If this form is a post-effective amendment filed pursuant to Rule 462(d) under the Securities Act, check the following box and list the Securities Act registration number of the earlier effective registration statement for the same offering.     o

        If delivery of the prospectus is expected to be made pursuant to Rule 434, check the following box.     o


CALCULATION OF REGISTRATION FEE


Title of each class of securities
to be registered

  Number of shares registered(1)

  Proposed maximum aggregate
offering price(2)

  Amount of
registration fee(3)


Common Stock, $0.001 par value per share   6,900,000   $55,200,000   $6,993.84

(1)
Includes 900,000 shares subject to the underwriters' over-allotment option.

(2)
Estimated solely for the purpose of calculating the amount of the registration fee in accordance with Rule 457(o) under the Securities Act of 1933, as amended.

(3)
Previously paid.


         The Registrant hereby amends this Registration Statement on such date or dates as may be necessary to delay its effective date until the Registrant shall file a further amendment that specifically states that this Registration Statement shall thereafter become effective in accordance with Section 8(a) of the Securities Act of 1933, as amended, or until the Registration Statement shall become effective on such date as the Commission, acting pursuant to said Section 8(a), may determine.




The information in this prospectus is not complete and may be changed. We may not sell these securities until the registration statement filed with the Securities and Exchange Commission is effective. This prospectus is not an offer to sell these securities and it is not soliciting an offer to buy these securities in any state where the offer or sale is not permitted.

SUBJECT TO COMPLETION, DATED JUNE 17, 2004

P R O S P E C T U S

LOGO

6,000,000 Shares
Common Stock
$                  per share


        We are selling 6,000,000 shares of our common stock. We have granted the underwriters an option to purchase up to 900,000 additional shares of common stock to cover over-allotments.

        This is the initial public offering of our common stock. We currently expect the initial public offering price to be between $7 and $8 per share. Our common stock has been approved for quotation on the Nasdaq National Market under the symbol "SNMX," subject to official notice of issuance.


         Investing in our common stock involves risks. See "Risk Factors" beginning on page 8.

        Neither the Securities and Exchange Commission nor any state securities commission has approved or disapproved of these securities or determined if this prospectus is truthful or complete. Any representation to the contrary is a criminal offense.


 
  Per Share
  Total
Public Offering Price   $     $  
Underwriting Discounts   $     $  
Proceeds to Senomyx, Inc. (before expenses)   $     $  

        The underwriters expect to deliver the shares to purchasers on or about                        , 2004.

Sole Book-Runner    
Citigroup   Deutsche Bank Securities

Needham & Company, Inc.

 

First Albany Capital

                        , 2004


        You should rely only on the information contained in or incorporated by reference in this prospectus. We have not authorized anyone to provide you with different information. We are not making an offer of these securities in any state where the offer is not permitted. You should not assume that the information contained in this prospectus is accurate as of any date other than the date on the front of this prospectus.



TABLE OF CONTENTS

 
  Page
Summary   1
Risk Factors   8
Forward-Looking Statements   23
Notice to Investors   23
Use of Proceeds   24
Dividend Policy   25
Capitalization   26
Dilution   27
Selected Financial Data   29
Management's Discussion and Analysis of Financial Condition and Results of Operations   31
Business   42
Management   59
Certain Transactions   74
Principal Stockholders   77
Description of Capital Stock   80
Material United States Federal Income Tax Consequences to Non-United States Holders   84
Shares Eligible for Future Sale   87
Underwriting   89
Legal Matters   92
Experts   92
Where You Can Find Additional Information   92
Index to Financial Statements   F-1

        Until                        , 2004 (25 days after the date of this prospectus), all dealers that buy, sell or trade our common stock, whether or not participating in this offering, may be required to deliver a prospectus. This is in addition to the dealers' obligation to deliver a prospectus when acting as underwriters and with respect to their unsold allotments or subscriptions.

i




SUMMARY

         After you read the following summary, you should read and consider carefully the more detailed information and financial statements and related notes that we include in and incorporate by reference into this prospectus. If you invest in our common stock, you are assuming a high degree of risk. See "Risk Factors."


Our Company

        We are a biotechnology company using proprietary taste receptor-based assays and screening technologies to discover and develop novel flavors and flavor enhancers for the packaged food and beverage industry. We believe our flavor ingredients will enable packaged food and beverage companies to improve the nutritional profile of their products and generate cost of goods savings, while maintaining or enhancing taste. We license our flavor ingredients to our collaborators on an exclusive basis, which we believe will provide these companies with the ability to differentiate their products. Our current programs focus on the development of savory, sweet and salt flavors or flavor enhancers.

        We have entered into product discovery and development collaborations with four of the world's leading packaged food and beverage companies: Campbell Soup Company, The Coca-Cola Company, Kraft Foods Global, Inc. and Nestlé SA. We currently anticipate that we will derive all of our revenues from existing and future collaborations. Our existing collaboration agreements provide for research and development funding, milestone payments based upon our achievement of research or development goals and, in the event of commercialization, royalties on future sales of consumer products incorporating our flavors and flavor enhancers. In addition, future collaboration agreements may provide for up-front license fees.

        Each of our collaboration agreements provides that we will pursue discovery and development of flavors and flavor enhancers for use by our collaborators within defined exclusive packaged food and beverage product fields. Under each of our existing collaboration agreements, we are primarily responsible for the discovery, development and regulatory approval phases and any associated expenses. Under each agreement, our collaborator will be responsible for determining whether to incorporate our flavor or flavor enhancer into a particular consumer product or products and manufacturing, marketing, selling and distributing the consumer product or products, and any associated expenses. We believe our collaborations will allow us to benefit from our collaborators' well-established brand recognition, global market presence, established sales and distribution channels and other industry specific expertise.

        Packaged food and beverage products include carbonated and non-carbonated beverages, frozen foods, snack foods, ice cream, pasta, canned soup and numerous other products. According to Euromonitor International, an independent research organization, worldwide sales of packaged food and beverage products in 2003 are estimated at approximately $1.2 trillion, of which $227 billion was generated in the United States. Based on these estimates, of the worldwide total in 2003, sales of packaged foods are estimated at approximately $906 billion and sales of non-alcoholic beverages are estimated at approximately $278 billion. Based on data from Euromonitor, Information Resources, Inc. and our collaborators' 2003 annual reports, we estimate that our collaborators' combined worldwide sales in 2003 of their products that fall within their exclusive product fields were $31 billion. Our collaboration agreements provide that we will receive a royalty of 1% to 4% on our collaborators' sales of products containing our flavors or flavor enhancers. However, our collaborators may not incorporate our flavors and flavor enhancers into all of their products within their exclusive product fields.


Our Product Candidates

        We discover and develop flavors and flavor enhancers for the packaged food and beverage industry. Flavors are substances that impart tastes or aromas in foods and beverages. Individuals experience the sensation of taste when flavors in food and beverage products interact with taste

1



receptors in the mouth. A taste receptor functions either by physically binding to a flavor ingredient in a process analogous to the way a key fits into a lock or by acting as a channel to allow ions to flow directly into a taste cell. As a result of these interactions, signals are sent to the brain where a specific taste sensation is registered.

        There are currently five recognized primary senses of taste: umami, which is the savory taste of glutamate, sweet, salt, bitter and sour. We are currently pursuing the discovery and development of flavors and flavor enhancers through the following programs:


Our Discovery and Development Approach

        We believe our approach to the discovery and development of novel flavors and flavor enhancers for packaged food and beverage companies offers significant advantages over traditional approaches. We use our proprietary taste receptor-based assays and high-throughput screening technologies, which are test systems incorporating human taste receptors, to screen more compounds in less time than traditional approaches. These assays and high-throughput screening technologies were developed by us in part using technologies licensed from Aurora Biosciences. The following diagram summarizes our discovery and development approach, the estimated timing of each phase of our approach and the status of our current collaboration programs:

LOGO

        The key phases of our discovery and development approach are:

2


        We believe our approach will result in the discovery and development of flavors and flavor enhancers that will provide valuable solutions to the following key challenges faced by the packaged food and beverages industry:


Our Strategy

        Our goal is to become the leader in discovering, developing and commercializing new and improved flavors and flavor enhancers. Key elements of our strategy include:

3



Risks Affecting Us

        We are subject to a number of risks of which you should be aware before you decide to buy our common stock. These risks are discussed more fully in "Risk Factors." We have not received regulatory approval for, or generated commercial revenues from, any of our flavors or flavor enhancers. We are dependent upon our existing and future product discovery and development collaborators for all of our revenue, and our collaborators may not incorporate our flavors and flavor enhancers into products that will be commercially successful. If we and our collaborators do not successfully commercialize any of our flavors or flavor enhancers, we will be unable to achieve our business objectives. As of March 31, 2004, we had an accumulated deficit of $69.6 million. We expect to incur additional losses for at least the next three years, and we may never become profitable.


Corporate Information

        We were incorporated in 1998 in Delaware. Our principal executive offices are located at 11099 North Torrey Pines Road, La Jolla, California 92037, and our telephone number is (858) 646-8300. Our website address is http://www.senomyx.com. The information contained in, or that can be accessed through, our website is not part of this prospectus. Unless the context indicates otherwise, as used in this prospectus, the terms "Senomyx," "we," "us" and "our" refer to Senomyx, Inc., a Delaware corporation. We use Senomyx® and the Senomyx logo as trademarks in the United States and other countries. All other trademarks and tradenames mentioned in this prospectus are the property of their respective owners.

4



The Offering

Common stock offered   6,000,000 Shares

Common stock to be outstanding after this offering

 

24,677,801 Shares

Use of proceeds

 

Research and development and general corporate purposes. See "Use of Proceeds."

Proposed Nasdaq National Market symbol

 

SNMX

        The number of shares of common stock to be outstanding immediately after this offering as shown above is based on the number of shares outstanding as of March 31, 2004. This number excludes, as of March 31, 2004:

        Except as otherwise indicated, all information in this prospectus assumes:

        Certain of our existing stockholders have indicated an interest in purchasing up to an aggregate of 1,000,000 shares of our common stock in this offering. However, because indications of interest are not binding upon us or the prospective purchasers, these stockholders may not acquire any shares in this offering.

5



Summary Financial Data

        The following table summarizes our financial data. The statements of operations data for the years ended December 31, 2001, 2002 and 2003 are derived from our audited financial statements included elsewhere in this prospectus. The statements of operations data for the years ended December 31, 1999 and 2000 have been derived from our audited financial statements not included in this prospectus. The balance sheet data as of March 31, 2004 and for the three months ended March 31, 2003 and 2004 are derived from our unaudited financial statements, which are included elsewhere in this prospectus. You should read this data together with our financial statements and related notes included elsewhere in this prospectus and the information under "Selected Financial Data" and "Management's Discussion and Analysis of Financial Condition and Results of Operations." The as adjusted balance sheet data reflects the balance sheet data at March 31, 2004 adjusted for the sale by us of 6,000,000 shares of common stock at an assumed initial offering price of $7.50 per share in this offering, after deducting the estimated underwriting discounts and commissions and estimated offering expenses payable by us, and the conversion of all of our outstanding shares of preferred stock into 16,205,306 shares of common stock upon the closing of this offering.

 
  Years ended December 31,
  Three months ended March 31,
 
 
  1999
  2000
  2001
  2002
  2003
  2003
  2004
 
 
   
   
   
   
   
  (Unaudited)

  (Unaudited)

 
 
  (In thousands, except share and per share data)

 
Statements of Operations Data:                                            
Revenue under collaborative agreements   $   $ 115   $ 2,275   $ 7,327   $ 9,537   $ 2,203   $ 2,241  
Operating expenses:                                            
  Research and development     155     6,137     16,263     17,635     16,802     4,002     3,950  
  General and administrative     1,172     3,196     4,952     4,154     4,096     1,275     1,010  
  Stock-based compensation:                                            
    Research and development     84     1,854     1,240     540     1,293     248     593  
    General and administrative     12     372     378     158     4,997     30     1,687  
   
 
 
 
 
 
 
 
      Total operating expenses     1,423     11,559     22,833     22,487     27,188     5,555     7,240  
   
 
 
 
 
 
 
 
Loss from operations     (1,423 )   (11,444 )   (20,558 )   (15,160 )   (17,651 )   (3,352 )   (4,999 )
Interest income (expense), net     (10 )   699     329     339     198     56     40  
   
 
 
 
 
 
 
 
Net loss   $ (1,433 ) $ (10,745 ) $ (20,229 ) $ (14,821 ) $ (17,453 ) $ (3,296 ) $ (4,959 )
   
 
 
 
 
 
 
 

Basic and diluted net loss per share(1):

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 
  Historical   $ (3.00 ) $ (12.30 ) $ (17.30 ) $ (9.60 ) $ (10.03 ) $ (1.97 ) $ (2.63 )
   
 
 
 
 
 
 
 
  Pro Forma                           $ (0.97 )       $ (0.27 )
                           
       
 
Shares used to compute basic and diluted net loss per share(1):                                            
  Historical     477,368     873,241     1,169,134     1,544,268     1,739,380     1,672,311     1,887,674  
   
 
 
 
 
 
 
 
  Pro Forma                             17,944,686           18,092,980  
                           
       
 

(1)
Please see Note 1 to our financial statements for an explanation of the method used to calculate the historical and pro forma net loss per share and the number of shares used in the computation of the per share amounts.

6


 
  As of March 31, 2004
 
 
  Actual
  As Adjusted
 
 
  (Unaudited)
(in thousands)

 
Balance Sheet Data:              
  Cash, cash equivalents and investments available-for-sale   $ 15,110   $ 55,540  
  Working capital     12,532     52,962  
  Total assets     18,666     59,096  
  Long-term obligations          
  Accumulated deficit     (69,641 )   (69,641 )
  Total stockholders' equity     14,784     55,214  

7



RISK FACTORS

         Investing in our common stock involves a high degree of risk. You should carefully consider the following risk factors and all other information contained in this prospectus before purchasing our common stock. Additional risks and uncertainties that we are unaware of may also become important factors that affect us. If any of the following risks occur, our business, financial condition or results of operations could be materially and adversely affected. In these circumstances, the market price of our common stock could decline, and you may lose some or all of your investment.

Risks Related To Our Business

        A key element of our strategy is to commercialize our flavors and flavor enhancers through product discovery and development collaborations. To date, all of our revenue has been derived solely from research and development payments and milestone payments received under collaboration agreements with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé. Substantially all of our revenue in the foreseeable future will result from these types of payments from these collaborations, unless we successfully commercialize a product candidate through these or other collaborators and earn royalties on future sales of consumer products incorporating our flavors or flavor enhancers.

        Our agreement with Campbell Soup provides for research and development funding until March 2006 and gives Campbell Soup the right to terminate the agreement earlier without cause on or after March 28, 2005, provided that it pay a specified termination fee if it terminates the agreement after March 28, 2005 but prior to March 28, 2006. Our agreements with Coca-Cola, Kraft Foods and Nestlé provide for research and development funding until April 2008, May 2005 and April 2005, respectively, and give each party the right to conclude the respective collaborative program earlier for any reason upon payment to us of a termination fee, provided that Coca-Cola may terminate the collaborative period without payment of an early conclusion fee in the event that we fail to achieve a specified research and development goal by April 22, 2006, subject to payment of research funding through July 22, 2006. If any or all of our agreements with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé expire or are terminated, our revenue would significantly decline and if all of our agreements expire or are terminated, our revenue would be substantially eliminated, which would have a material adverse effect on our business, financial condition and results of operations. Our collaborators may not renew their agreements with us or, if they do, they may not be on terms that are as favorable to us as our current agreements.

        We do not currently have a commercialized product and cannot assure you we will have a commercialized product in the foreseeable future, or at all. We will be dependent on our current and any other possible future collaborators to commercialize any flavors or flavor enhancers that we successfully develop and to provide the sales, marketing and distribution capabilities required for the success of our business. We have limited or no control over the amount and timing of resources that our current or any future collaborators may devote to our programs or potential products. Our collaborators may decide not to devote the necessary resources to the commercialization of our flavors or flavor enhancers, or may pursue a competitor's product if our flavors or flavor enhancers do not have the characteristics desired by the collaborator. These characteristics include, among other things, enhancement properties, temperature stability, solubility, taste and cost. If these collaborators fail to conduct their commercialization, sales and marketing or distribution activities successfully and in a timely manner, we will earn little or no royalty revenues from our flavors and flavor enhancers and we will not be able to achieve our objectives or build a sustainable or profitable business.

8


        Our present and any future product discovery and development collaboration opportunities could be harmed if:

        We may not be able to enter into additional product discovery and development collaborations due to the exclusive nature of our current product discovery and development collaborations. Each of our current collaboration agreements provides that we will conduct research and development on flavors and flavor enhancers for use within one or more defined packaged food and beverage product fields on an exclusive basis for the respective collaborator during the collaborative period specified in the agreement. Because each of these agreements is exclusive, we will not be able to enter into a collaboration agreement with any other food and beverage company covering the same product field during the applicable collaborative period. In addition, our collaborators' competitors may not wish to do business with us at all due to our relationship with our collaborators. If we are unable to enter into additional product discovery and development collaborations, our ability to sustain or expand our business will be significantly diminished.

        We may not succeed in developing flavors or flavor enhancers with the appropriate attributes required for use in successful commercial products. Successful flavors and flavor enhancers require, among other things, appropriate biological activity, including the correct flavor or flavor enhancer property for the product application, an acceptable safety profile, including lack of toxicity or allergenicity, and appropriate physical or chemical properties, including relative levels of stability, volatility and resistance to heat. Successful flavors and flavor enhancers must also be cost-efficient for our collaborators. We may not be able to develop flavors or flavor enhancers that meet these criteria.

        We do not have a GRAS determination or regulatory approval for any product candidates at this time. In the United States, the development, sale and incorporation of our flavors or flavor enhancers into products are subject to regulation by the Food and Drug Administration, or FDA, and in some instances other government bodies. Obtaining and maintaining a GRAS determination or regulatory approval is typically costly and can take many years.

9


        Depending on the amount or intended use of a particular flavor or flavor enhancer added to a product and the number of product categories in which the flavor or flavor enhancer will be incorporated, specific safety assessment protocols and regulatory processes must be satisfied before we or our collaborators can commercially market and sell products containing any flavors or flavor enhancers that we may discover. A key element of our strategy is to develop flavors and flavor enhancers that will be subject to review under the FEMA GRAS process, which we expect will take 12 to 18 months and is less expensive than the alternative of filing a food additive petition with the FDA, which can take eight years or more. The FEMA GRAS review process may take longer than 18 months and cost more than $1 million if additional safety studies are requested by the FEMA expert panel or are necessary to explain unexpected safety study findings. There is a risk that one or more of our product candidates may not qualify for a FEMA GRAS determination. This may occur for a variety of reasons, including the flavor or flavor enhancer's intended use, the amount of the flavor or flavor enhancer intended to be added to packaged foods and beverages, the number of product categories in which the flavor or flavor enhancer will be incorporated, whether the flavor or flavor enhancer imparts sweetness, the safety profile of the flavor or flavor enhancer and the FEMA expert panel's interpretation of the safety data. Even if we obtain a GRAS determination with respect to a flavor or flavor enhancer, the FDA has the ability to challenge such determination, which could materially adversely affect our ability to market products on schedule or at all. In the event that a particular flavor or flavor enhancer does not qualify for FEMA GRAS determination, we will be required to pursue a lengthly FDA approval process or dedicate our development efforts to alternative compounds, which would further delay commercialization. In addition, laws, regulations or FDA practice governing the regulatory approval process, the availability of the GRAS determination process or the manufacture or labeling of such products, may change in a manner that could adversely affect our ability to commercialize products on schedule or at all.

        Sales of our flavors or flavor enhancers outside of the United States will be subject to foreign regulatory requirements. In most cases, whether or not a GRAS determination or FDA approval has been obtained, approval of a product by the comparable regulatory authorities of foreign countries must still be obtained prior to manufacturing or marketing the product in those countries. A GRAS determination or FDA approval in the United States or in any other jurisdiction does not ensure approval in other jurisdictions because the requirements from jurisdiction to jurisdiction may vary widely. Obtaining foreign approvals could result in significant delays, difficulties and costs for us and require additional safety studies and additional expenses. If we fail to comply with these regulatory requirements or to obtain and maintain required approvals, our ability to generate revenue will be diminished.

        We and our collaborators may not be successful in overcoming these regulatory hurdles, which could result in product launch delays, unanticipated expenses, termination of collaborations, and flavors and flavor enhancers not being approved for incorporation into consumer products. These consequences would have a material adverse effect on our business financial condition and results of operations.

        Even if we discover and develop flavors and flavor enhancers that obtain the necessary GRAS determination or regulatory approval, our success depends to a significant degree upon the commercial success of packaged food and beverage products incorporating those flavors or flavor enhancers. If these products fail to achieve or subsequently maintain market acceptance or commercial viability, our business would be significantly harmed because our royalty revenue is dependent upon consumer sales of these products. In addition we could be unable to maintain our existing collaborations or attract new product discovery and development collaborators. Many factors may affect the market acceptance and

10


commercial success of any potential products incorporating flavors or flavor enhancers that we may discover, including:

        We have not been profitable and have generated substantial operating losses since we were incorporated in September 1998. We incurred net losses of approximately $14.8 million for the year ended December 31, 2002, and approximately $17.5 million for the year ended December 31, 2003. As of March 31, 2004, we had an accumulated deficit of approximately $69.6 million. We expect to incur additional losses for at least the next three years. The extent of our future losses will depend, in part, on the rate of increase in our operating expenses and the rate of growth, if any, in our revenue from our four existing and any future product discovery and development collaborations as well as from other sources that may become available to us in the future and on the level of our expenses. To date, our revenue has come solely from research and development funding and milestone payments under our product discovery and development collaboration agreements with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé. In order for us to generate royalty revenue and become profitable, we must retain our existing product discovery and development collaborations and our collaborators must commercialize products incorporating one or more of our flavors or flavor enhancers, from which we can derive royalty revenues. Our ability to generate royalty revenue is uncertain and will depend upon our ability to meet particular research, development and commercialization objectives.

        Our operating results have fluctuated in the past and are likely to vary significantly in the future based upon a number of factors, many of which we have little or no control over. We operate in a highly dynamic industry and future results could be subject to significant fluctuations. These fluctuations could cause us to fail to meet or exceed financial expectations of securities analysts or investors, which could cause our stock price to decline rapidly and significantly. Revenue and expenses in future periods may be greater or less than revenue and expenses in the immediately preceding period or in the comparable period of the prior year. Therefore, period-to-period comparisons of our operating results are not necessarily a good indication of our future performance. Some of the factors that could cause our operating results to fluctuate include:

11



        If we are unable to successfully commercialize our flavors and flavor enhancers, we may need to obtain additional capital or change our strategy to continue our operations. In addition, our business and operations may change in a manner that would consume available resources at a greater rate than anticipated. In such event, we may need to raise substantial additional capital to, among other things:

        If we require additional capital to continue our operations, we cannot ensure you that additional financing will be available on terms acceptable to us, or at all. If adequate funds are not available or are not available on acceptable terms, our ability to fund our operations, take advantage of opportunities, identify and develop flavors and flavor enhancers, develop technologies or otherwise respond to competitive pressures could be significantly limited. In addition, if financing is not available, we may need to alter our strategy or cease operations. In addition, issuances of debt or additional equity could impact your rights as a holder of our common stock, may dilute your ownership percentage and may impose restrictions on our operations. These restrictions could include limitations on additional borrowing, specific restrictions on the use of our assets as well as prohibitions on our ability to create liens, pay dividends, redeem our stock or make investments.

        Our success depends to a significant degree upon the continued contributions of our executive officers, management and scientific staff. If we lose the services of one or more of these people and, in particular, Kent Snyder, our President and Chief Executive Officer, or Mark Zoller, Ph.D., our Chief Scientific Officer and Sr. Vice President, Research, the relationships we have with our collaborators would likely be negatively impacted and we may be delayed or unable to develop new product candidates, commercialize our existing product candidates or achieve our other business objectives, any of which could cause our stock price to decline. We have entered into employment letter agreements with Kent Snyder, Mark Zoller, Ph.D., Harry Leonhardt, Esq., our Vice President, General Counsel and Corporate Secretary, John Poyhonen, our Vice President and Chief Financial and Business Officer, and Klaus Gubernator, Ph.D., our Vice President, Development, the terms of which are included in this prospectus under the heading "Management—Employment Agreements." All of our employees are at-will employees, which means that either we or the employee may terminate their employment at any time. We currently have no key person insurance.

        In addition, our discovery and development programs depend on our ability to attract and retain highly skilled scientists, including molecular biologists, biochemists, chemists and engineers. We may not be able to attract or retain qualified employees in the future due to the intense competition for

12



qualified personnel among technology-based businesses, particularly in the San Diego area. We also face competition from universities and public and private research institutions in recruiting and retaining highly qualified scientific and management personnel. If we are not able to attract and retain the necessary personnel to accomplish our business objectives, we may experience constraints that will adversely affect our ability to meet the demands of our current or any future product discovery and development collaborators in a timely fashion or to support our independent discovery and development programs.

        Our strategy includes entering into and working on simultaneous flavor and flavor enhancer discovery and development programs across multiple markets. We increased the number of our full-time employees from seven on December 31, 1999 to 73 on March 31, 2004 and we expect to continue to grow to meet our strategic objectives. If our growth continues, it will continue to place a strain on us, our management and our resources. Our ability to effectively manage our operations, growth and various projects requires us to continue to improve our operational, financial and management controls, reporting systems and procedures and to attract and retain sufficient numbers of talented employees. We may not be able to successfully implement these tasks on a larger scale and, accordingly, we may not achieve our research, development and commercialization goals. If we fail to improve our operational, financial and management information systems, or fail to effectively monitor or manage our new and future employees or our growth, our business would suffer significantly. In addition, no assurance can be made that we will be able to secure adequate facilities to house our staff, conduct our research or achieve our business objectives.

        We do not have experience in manufacturing, nor do we have the resources or facilities to manufacture, flavors and flavor enhancers on a commercial scale. Therefore, the commercialization of our flavors and flavor enhancers will depend in part on our or our collaborators' ability to contract with third-party manufacturers of our flavors and flavor enhancers on a large scale, at a competitive cost, with the specified quality and in accordance with relevant food and beverage regulatory requirements. Any such third-party manufacturers may encounter manufacturing difficulties at any time that could result in delays in the commercialization of potential flavors and flavor enhancers. Our inability to find capable third-party manufacturers or to enter into agreements on acceptable terms with third-party manufacturers could delay commercialization of any products we may develop and may harm our relationships with our existing and any future product discovery and development collaborators and our customers. Moreover, if we are required to change from one third-party manufacturer to another for any reason, the commercialization of our products may be delayed further. In addition, if third-party manufacturers fail to comply with the FDA's good manufacturing practice regulations, then we may be subject to adverse regulatory action including product recalls, warning letters and withdrawal of our products, or our collaborators' or customers' products, from the market.

        Further, because our flavors and flavor enhancers are regulated as food products under the Federal Food, Drug and Cosmetic Act, we and the third parties with which we collaborate or contract to manufacture, process, pack, import or otherwise handle our products or our product ingredients, may be required to comply with certain registration, prior notice submission, recordkeeping and other regulatory requirements. Failure of any party in the chain of distribution to comply with any applicable requirements under the Federal Food, Drug and Cosmetic Act or the FDA's implementing regulations may adversely affect the manufacture and/or distribution of our products in commerce.

13



        If appropriate opportunities become available, we may consider acquiring businesses, technologies or products that we believe are a strategic fit with our business. We currently have no commitments or agreements with respect to, and are not actively seeking, any material acquisitions. We have limited experience in identifying acquisition targets, successfully acquiring them and integrating them into our current infrastructure. We may not be able to successfully integrate any businesses, products, technologies or personnel that we might acquire in the future without a significant expenditure of operating, financial and management resources, if at all. In addition, future acquisitions might be funded by issuances of additional debt or equity, which could impact your rights as a holder of our common stock and may dilute your ownership percentage. Any of the foregoing could have a significant adverse effect on our business, financial condition and results of operations.

Risks Related To Our Industry

        Our success depends in part on our ability to obtain and maintain intellectual property that protects our technologies and flavors and flavor enhancers. Patent positions may be highly uncertain and may involve complex legal and factual questions, including the ability to establish patentability of sequences relating to taste receptors, proteins, chemical synthesis techniques, compounds and methods for using them to modulate taste for which we seek patent protection. No consistent standard regarding the allowability or enforceability of claims in many of our pending patent applications has emerged to date. As a result, we cannot predict the breadth of claims that will ultimately be allowed in our patent applications, if any, including those we have in-licensed or the extent to which we may enforce these claims against our competitors. The degree of future protection for our proprietary rights is therefore highly uncertain and we cannot assure you that:

        In addition, patent law outside the United States is uncertain and in many countries intellectual property laws are undergoing review and revision. The laws of some countries do not protect

14



intellectual property rights to the same extent as domestic laws. It may be necessary or useful for us to participate in opposition proceedings to determine the validity of our competitors' patents or to defend the validity of any of our or our licensor's future patents, which could result in substantial costs and would divert our efforts and attention from other aspects of our business.

        Technologies licensed to us by others, or in-licensed technologies, are important to our business. In particular, we depend on high-throughput screening technologies that we licensed from Aurora, technology related to certain taste receptor sequences that we license from the University of California and others and technology related to compound libraries that we license from third parties. In addition, we may in the future acquire rights to additional technologies by licensing such rights from existing licensors or from third parties. Such in-licenses may be costly. Also, we generally do not control the patent prosecution, maintenance or enforcement of in-licensed technologies. Accordingly, we are unable to exercise the same degree of control over this intellectual property as we do over our internally developed technologies. Moreover, some of our academic institution licensors, collaborators and scientific advisors have rights to publish data and information to which we have rights. If we cannot maintain the confidentiality of our technologies and other confidential information in connection with our collaborations, our ability to protect our proprietary information or obtain patent protection in the future may be impaired, which could have a significant adverse effect on our business, financial condition and results of operations.

        Many of the patent applications filed by us and our licensors were filed recently with the United States Patent and Trademark Office and most have not been substantively examined and may not result in patents being issued. Some of these patent applications claim sequences that were identified from different publicly available sequence information sources such as the High-Throughput Genomic Sequences division of GenBank. It is difficult to predict whether any of our or our licensors' applications will ultimately be found to be patentable or, if so, to predict the scope of any allowed claims. In addition, the disclosure in our or our licensors' patent applications, particularly in respect of the utility of our claimed inventions, may not be sufficient to meet the statutory requirements for patentability in all cases. As a result, it is difficult to predict whether any of our or our licensors' applications will be allowed, or, if so, to predict the scope of any allowed claims or the enforceability of the patents. Even if enforceable, others may be able to design around any patents or develop similar technologies that are not within the scope of such patents. Our and our licensors' patent applications may not issue as patents that will provide us with any protection or competitive advantage.

        Our commercial success, if any, will be significantly harmed if we infringe the patent rights of third parties or if we breach any license or other agreements that we have entered into with regard to our technology or business.

        We are aware of other companies and academic institutions that have been performing research in the areas of taste modulation and flavors and flavor enhancers. In particular, other companies and academic institutions have announced that they have conducted taste-receptor research and have published data on taste receptor sequence information and taste receptors or filed patent applications or obtained patent protection on taste modulation or taste receptors and their uses, including Linguagen Corp., Mount Sinai School of Medicine, The Scripps Research Institute, the University of California, Monell Chemical Senses Corp., the Warner-Lambert Company and Virginia Commonwealth University. To the extent any of these companies or academic institutions currently have, or obtain in

15



the future, broad patent claims, such patents could block our ability to use various aspects of our discovery and development process and might prevent us from developing or commercializing newly discovered flavors and flavor enhancers or otherwise conducting our business. The University of California, for example, claims certain patent rights relating to the coexpression of T1R receptors that may not have been licensed to us. While our technology is focused on the use of human T1R receptors, we cannot assure you that it does not infringe such patent rights. In such event, if we are not able to amend our license with the University of California to include such patent rights and our technology is found to interfere with or infringe such patent rights, our business, financial condition and results of operations could suffer a significant adverse effect. In addition, it is possible that some of the flavors or flavor enhancers that are discovered using our technology may not be patentable or may be covered by intellectual property of third parties.

        We are not currently a party to any litigation, interference, opposition, protest, reexamination, reissue or any other potentially adverse governmental, ex parte or inter-party proceeding with regard to our patent or trademark positions. However, the life sciences and other technology industries are characterized by extensive litigation regarding patents and other intellectual property rights. Many life sciences and other technology companies have employed intellectual property litigation as a way to gain a competitive advantage. If we become involved in litigation, interference proceedings, oppositions, reexamination, protest or other potentially adverse intellectual property proceedings as a result of alleged infringement by us of the rights of others or as a result of priority of invention disputes with third parties, we might have to spend significant amounts of money, time and effort defending our position and we may not be successful. In addition, any claims relating to the infringement of third-party proprietary rights or proprietary determinations, even if not meritorious, could result in costly litigation, lengthy governmental proceedings, divert management's attention and resources, or require us to enter into royalty or license agreements that are not advantageous to us.

        Should any person have filed patent applications or obtained patents that claim inventions also claimed by us, we may have to participate in an interference proceeding declared by the relevant patent regulatory agency to determine priority of invention and, thus, the right to a patent for these inventions in the United States. Such a proceeding could result in substantial cost to us even if the outcome is favorable. Even if successful on priority grounds, an interference action may result in loss of claims based on patentability grounds raised in the interference action. Litigation, interference proceedings or other proceedings could divert management's time and efforts. Even unsuccessful claims could result in significant legal fees and other expenses, diversion of management's time and disruption in our business. Uncertainties resulting from initiation and continuation of any patent proceeding or related litigation could harm our ability to compete and could have a significant adverse effect on our business, financial condition and results of operations.

        An adverse ruling arising out of any intellectual property dispute, including an adverse decision as to the priority of our inventions, could undercut or invalidate our intellectual property position. An adverse ruling could also subject us to significant liability for damages, including possible treble damages, prevent us from using technologies or developing products, or require us to negotiate licenses to disputed rights from third parties. Although patent and intellectual property disputes in the technology area are often settled through licensing or similar arrangements, costs associated with these arrangements may be substantial and could include license fees and ongoing royalties. Furthermore, necessary licenses may not be available to us on satisfactory terms, if at all. Failure to obtain a license in such a case could have a significant adverse effect on our business, financial condition and results of operations.

16



        We rely in part on trade secret protection for our confidential and proprietary information, know how and processes. Our policy is to execute proprietary information and invention agreements with our employees and consultants upon the commencement of an employment or consulting relationship. These agreements generally require that all confidential information developed by the individual or made known to the individual by us during the course of the individual's relationship with us be kept confidential and not be disclosed to third parties. These agreements also generally provide that inventions conceived by the individual in the course of their employment shall be our exclusive property. There can be no assurance that we will be able to effectively enforce these agreements or that proprietary information is our exclusive property. There can be no assurance that the subject proprietary information will not be disclosed, that others will not independently develop substantially equivalent proprietary information and techniques or otherwise gain access to our trade secrets or that we can meaningfully protect our trade secrets. Costly and time-consuming litigation could be necessary to enforce and determine the scope of our proprietary rights, and failure to obtain or maintain trade secret protection could adversely affect our competitive business position.

        The life sciences and other technology industries are characterized by rapid technological change, and the area of sensory or taste receptor research is a rapidly evolving field. Our future success will depend on our ability to maintain a competitive position with respect to technological advances. Technological developments by others may result in our flavors or flavor enhancers and technologies becoming obsolete.

        In particular, we face substantial competition from companies pursuing the commercialization of products and services relevant to taste using more traditional methods for the discovery of flavors and flavor enhancers. These competitors include leading flavor companies, such as International Flavors & Fragrances Inc., Givaudan SA, Symrise, Quest International and Firmenich. We currently compete and will continue to compete in the future with these companies in collaborating with and selling flavor products and technologies to manufacturers of packaged food and beverage products. Many of these companies have substantially greater capital resources, research and development resources and experience, manufacturing capabilities, regulatory expertise, sales and marketing resources, established relationships with consumer products companies and production facilities.

        We are not aware of any products currently available or under development that would compete with the flavors and flavor enhancers that we are developing under our sweet and salt programs. Savory flavor enhancers, however, particularly inosine monophosphate, or IMP, are commercially available, and we will compete with the companies that produce these flavors. IMP is widely available and is a generally accepted food additive by the packaged food and beverage industry. As a result, our existing and future collaborators may choose to incorporate IMP or similar savory flavor enhancers into their packaged food and beverage products instead of our savory flavors and flavor enhancers.

        We may in the future face competition from life sciences and other technology companies and other commercial enterprises. These entities engage as we do in biotechnology, biology or chemistry and could apply this technology to the discovery and development of flavors and flavor enhancers. We are aware of one other company, Linguagen Corp., a privately-held company that we believe is involved in research on sweetness potentiators, salt substitutes and bitter blockers, specifically adenosine 5' monophosphate, or AMP, and has announced research and development collaborations with The Solae Company and Perrigo Company in the field of flavor discovery and modification. We cannot guarantee

17



that products developed as a result of our competitors' existing or future collaborations will not compete with our flavors and flavor enhancers.

        Universities and public and private research institutions are also potential competitors. While these organizations primarily have educational objectives, they may develop proprietary technologies related to the sense of taste or secure patent protection that we may need for the development of our technologies and products. We may attempt to license these proprietary technologies, but these licenses may not be available to us on acceptable terms, if at all.

        Our competitors, either alone or with their collaborative partners, may succeed in developing technologies or discovering flavors or flavor enhancers that are more effective, safer, more affordable or more easily commercialized than ours, and our competitors may obtain intellectual property protection or commercialize products sooner than we do. Developments by others may render our product candidates or our technologies obsolete. In addition, our current product discovery and development collaborators are not prohibited from entering into research and development collaboration agreements with third parties in any product field. Our failure to compete effectively would have a significant adverse effect on our business, financial condition and results of operations.

        Because our business strategy involves the development and sale by our collaborators of commercial products incorporating our flavors and flavor enhancers, we may be sued for product liability. We may be held liable if any product we develop and commercialize, or any product our collaborators commercialize that incorporates any of our flavors or flavor enhancers, causes injury or is found otherwise unsuitable during product testing, manufacturing, marketing, sale or consumer use. In addition, the safety studies we must perform and the FEMA GRAS determination we must obtain prior to incorporating our flavors and flavor enhancers into a commercial product will not protect us from any such liability.

        If we and our collaborators commence sale of commercial products we will need to obtain product liability insurance, and this insurance may be prohibitively expensive, or may not fully cover our potential liabilities. Inability to obtain sufficient insurance coverage at an acceptable cost or otherwise to protect against potential product liability claims could prevent or inhibit the commercialization of products developed by us or our product discovery and development collaborators. We may be obligated to indemnify our product discovery and development collaborators for product liability or other losses they incur as a result of our flavors and flavor enhancers. Any indemnification we receive from such collaborators for product liability that does not arise from our flavors and flavor enhancers may not be sufficient to satisfy our liability to injured parties. If we are sued for any injury caused by our flavors and flavor enhancers or products incorporating our flavors and flavor enhancers, our liability could exceed our total assets.

        Our discovery and development process requires our employees to routinely handle hazardous chemical, radioactive and biological materials. Our operations also produce hazardous waste products. Federal, state and local laws and regulations govern the use, manufacture, storage, handling and disposal of these materials. As a result of the increase in size of our operations, we were recently re-classified from a small quantity to a large quantity generator of hazardous waste. This reclassification may result in increased scrutiny of our operations by the Environmental Protection Agency. Compliance with applicable environmental laws and regulations may be expensive, and current or future environmental regulations may impair our discovery and development efforts.

18


        In addition, we cannot entirely eliminate the risk of accidental contamination or discharge and any resultant injury from these materials. Our property and casualty policy has very limited coverage for damages or cleanup costs related to radioactive contamination and pollutants and our general liability insurance policy excludes coverage for damages and fines arising from biological or hazardous waste disposal or contamination. We do not carry specific biological or hazardous waste insurance. We may be forced to curtail operations or be sued for any injury or contamination that results from our use or the use by others of these materials, and our liability may exceed our total assets.

Risks Related To Our Common Stock

        Prior to this offering, there has been no public market for shares of our common stock. An active, liquid trading market may not develop following completion of this offering or, if developed, may not be maintained.

        We will determine the initial public offering price for the shares through negotiations with representatives of the underwriters. This price may not be indicative of prices that will prevail later in the trading market. The market price of the common stock may decline below the initial public offering price, and you may not be able to resell your shares at or above the initial public offering price.

        The stock market, from time to time, has experienced significant price and volume fluctuations that are unrelated to the operating performance of companies. The market prices of technology companies, particularly life science companies, have been highly volatile. In addition, our stock price may be particularly volatile because investors may compare us to traditional flavor companies as well as technology-based companies regardless of our individual operating results. Our stock may be affected by this type of market volatility, as well as by our own performance. The following factors, among other risk factors, may have a significant effect on the market price of our common stock:

19


        We will retain broad discretion over the use of proceeds from this offering. Stockholders may not deem the actual uses desirable, and our use of the proceeds may not yield a significant return or any return at all. We intend to use a majority of the proceeds from this offering to continue the discovery and development of flavors and flavor enhancers in our savory, sweet and salt enhancer programs and to use the remaining proceeds to maintain and expand our intellectual property position, fund the discovery of new taste receptors and acquisition of technologies, product rights or businesses, although we have no current agreements or commitments for, nor are we actively seeking, any such acquisition, and to fund working capital and general corporate purposes.

        Because of the number and variability of factors that determine the actual uses of the net proceeds from this offering, we cannot guarantee that the actual uses will not vary substantially from our currently planned uses.

        The historical net tangible book value of our common stock as of March 31, 2004 is approximately $14.8 million, or approximately $5.98 per share, based on the number of shares outstanding as of March 31, 2004. We expect the initial public offering price to be substantially higher than $5.98 per share. Therefore, if you purchase shares of our common stock in this offering at an assumed price of $7.50 per share, you will incur immediate and substantial dilution in net tangible book value of $5.26 per share. You may incur additional dilution if the holders of outstanding options or warrants exercise those options or warrants. All purchasers of shares in this offering will contribute 36% of the total amount of the purchase price that has been paid by all shareholders but will own only 24% of shares outstanding after the offering. Additional information regarding the dilution to investors in this offering is included in this prospectus under the heading "Dilution."

        Provisions of our amended and restated certificate of incorporation and bylaws, as well as provisions of Delaware law, could make it more difficult for a third party to acquire us, even if doing so would benefit our stockholders. These provisions may also make it difficult for stockholders to remove and replace our board of directors and management. These provisions:

        In addition, the requirements of Section 203 of the Delaware General Corporation Law may discourage, delay or prevent a third party from acquiring us. These requirements are described in "Description of Capital Stock—Delaware Anti-Takeover Law and Certain Charter Provisions."

20



        Recently enacted and proposed changes in the laws and regulations affecting public companies, including the provisions of the Sarbanes-Oxley Act of 2002 and rules adopted or proposed by the Securities and Exchange Commission, or SEC, and by the Nasdaq Stock Market, will result in increased costs to us as we evaluate the implications of these laws and regulations and respond to their requirements. These laws and regulations could make it more difficult or more costly for us to obtain certain types of insurance, including director and officer liability insurance, and we may be forced to accept reduced policy limits and coverage or incur substantially higher costs to obtain the same or similar coverage. The impact of these events could also make it more difficult for us to attract and retain qualified persons to serve on our board of directors, our board committees or as executive officers. We are presently evaluating and monitoring developments with respect to these laws and regulations and cannot predict or estimate the amount or timing of additional costs we may incur to respond to their requirements.

        After this offering, our officers, directors and stockholders with at least 5% of our stock will together beneficially own approximately 56% of our common stock, excluding shares that may be purchased by such persons in this offering. If these officers, directors and principal stockholders act together, they will be able to exert a significant degree of influence over our management and affairs and over matters requiring stockholder approval, including the election of directors and approval of mergers or other business combination transactions. The interests of this concentration of ownership may not always coincide with our interests or the interests of investors in this offering or other stockholders. For instance, officers, directors and principal stockholders, acting together, could cause us to enter into transactions or agreements that we would not otherwise consider. Similarly, this concentration of ownership may have the effect of delaying or preventing a change in control of our company otherwise favored by our other stockholders. This concentration of ownership could depress our stock price.

        The market price of our common stock could decline as a result of sales by existing holders of a large number of shares of our common stock in the public market after the closing of this offering or the perception that these sales could occur. These sales could make it more difficult for us to sell equity securities in the future at a time and price that we deem appropriate. After this offering, we will have outstanding 24,677,801 shares of common stock, based on the number of shares outstanding as of March 31, 2004. All the shares sold in this offering will be freely tradable and holders of 16,205,306 shares of common stock and warrants to purchase 10,199 shares of common stock will have rights, subject to some conditions, to require us to file registration statements covering the shares they currently hold or may acquire upon exercise of the warrants, or to include these shares in registration statements that we may file for ourselves or other stockholders. A substantial number of shares may be sold in the public market immediately following the expiration of contractual "lock-up" restrictions to which our stockholders are subject, or after the expiration of the "lock-up," immediately after investment funds that currently own a large number of our shares distribute those shares to their limited partners. These "lock-up" restrictions are described in the "Underwriting" section of this prospectus. The sale of a substantial number of shares, especially in a short period of time, could result in a significant decline in our stock price. After this offering we also intend to register up to approximately 3,987,159 shares of our common stock for sale upon exercise of outstanding stock

21


options issued pursuant to compensatory benefit plans or reserved for future issuance pursuant to our amended and restated 2004 equity incentive plan and 2004 employee stock purchase plan. In addition, the market price of our common stock could decline if we sell additional equity securities in connection with financings or collaboration agreements.

        We have paid no cash dividends on any of our classes of capital stock to date, and we currently intend to retain our future earnings, if any, to fund the development and growth of our business. In addition, the terms of any future debt or credit facility may preclude us from paying any dividends. As a result, capital appreciation, if any, of our common stock will be your sole source of potential gain for the foreseeable future.

22



FORWARD-LOOKING STATEMENTS

        This prospectus contains forward-looking statements that are based on our management's beliefs and assumptions and on information currently available to our management. The forward looking statements are contained principally in the sections entitled "Summary," "Risk Factors," "Management's Discussion and Analysis of Financial Condition and Results of Operations" and "Business." Forward-looking statements include, but are not limited to, statements about:

        In some cases, you can identify forward-looking statements by terms such as "may," "will," "should," "could," "would," "expects," "plans," "anticipates," "believes," "estimates," "projects," "predicts," "potential" and similar expressions intended to identify forward-looking statements. These statements involve known and unknown risks, uncertainties and other factors which may cause our actual results, performance or achievements to be materially different from any future results, performances, time frames or achievements expressed or implied by the forward-looking statements. We discuss many of these risks, uncertainties and other factors in this prospectus in greater detail under the heading "Risk Factors." Given these risks, uncertainties and other factors, you should not place undue reliance on these forward-looking statements. Also, these forward-looking statements represent our estimates and assumptions only as of the date of this prospectus. You should read this prospectus and the documents that we reference in this prospectus and have filed as exhibits to the registration statement, of which this prospectus is a part, completely and with the understanding that our actual future results may be materially different from what we expect. We hereby qualify all of our forward-looking statements by these cautionary statements. The forward-looking statements contained in this prospectus are excluded from the safe harbor protection provided by the Private Securities Litigation Reform Act of 1995 and Section 27A of the Securities Act of 1933, as amended, or the Securities Act.

        Information regarding market and industry statistics contained in the "Summary" and "Business" sections of this prospectus is included based on information available to us that we believe is accurate. It is generally based on academic and other publications that are not produced for purposes of securities offerings or economic analysis. We have not reviewed or included data from all sources and cannot assure you of the accuracy of the market and industry data we have included.

        Except as required by law, we assume no obligation to update these forward-looking statements publicly, or to update the reasons actual results could differ materially from those anticipated in these forward-looking statements, even if new information becomes available in the future.


NOTICE TO INVESTORS

        You should rely only on the information contained in this prospectus. We have not authorized anyone to provide you with different or additional information. We are not making an offer of these securities in any state where an offer is not permitted. You should not assume that the information provided by this prospectus is accurate as of any date other than the date on the front of this prospectus, regardless of the time of delivery of this prospectus or any sale of our common stock.

23




USE OF PROCEEDS

        We estimate that the net proceeds from this offering without the exercise of the underwriters' over-allotment option will be approximately $40.4 million, based upon an assumed initial public offering price of $7.50 per share and after deducting estimated underwriting discounts and estimated offering expenses. If the underwriters exercise their over-allotment option in full, we estimate that the net proceeds will be approximately $46.7 million.

        We estimate we will use approximately $22 million to $34 million of the net proceeds of this offering, assuming no exercise of the underwriters' over-allotment option, to continue the discovery and development of flavors and flavor enhancers in our sweet, savory and salt enhancer programs. In particular, we expect to use these amounts to:

Because we track and forecast our expenses by type of expense rather than by specific program, we cannot estimate more specifically how much of the proceeds will be spent on any particular program.

        We estimate we will use approximately $2 million to $6 million of the net proceeds of this offering, assuming no exercise of the underwriters' over-allotment option, to maintain and expand our intellectual property position and fund the discovery of new taste receptors and acquisition of technologies, product rights or businesses, although we have no current agreements or commitments for, nor are we actively seeking, any such acquisition.

        We estimate we will use approximately $6 million to $12 million of the net proceeds of this offering, assuming no exercise of the underwriters' over-allotment option, to fund working capital and general corporate purposes, including costs related to executive, legal, risk management, business and corporate development functions, finance and accounting.

        We have not determined the amount or timing of these expenditures. To the extent we use more of the net proceeds of this offering in any one of the above categories, less of the proceeds will be available for the other categories. Pending the contemplated uses described above, we will invest the net proceeds of this offering in short-term, interest-bearing, investment-grade securities.

        Our management has broad discretion over the use of the net proceeds of this offering among the categories set forth above and other uses. The amount and timing of our actual expenditures and our future liquidity and capital requirements are subject to change and will depend on many factors, some of which may be beyond our control, including:

24


        We may not be able to discover compounds that have the desired enhancement effect, that are safe, that are eligible for FEMA GRAS determination or that have appropriate attributes required for use in successful commercial products. However, assuming that our current flavor and flavor enhancer discovery and development programs proceed as we currently anticipate, we expect that the net proceeds from this offering, together with our existing capital resources, interest income and revenue from our existing collaborations, should be sufficient to fund our anticipated operating expenses and capital requirements for over 12 months, and should allow us to obtain FEMA GRAS determination for at least one flavor or flavor enhancer compound in each of our current programs.


DIVIDEND POLICY

        We have never declared or paid any cash dividends on shares of our capital stock. We currently intend to retain all available funds and any future earnings to support operations and to finance the growth and development of our business and do not intend to pay cash dividends on our common stock for the foreseeable future. Any determination related to payments of future dividends will be at the discretion of our board of directors after taking into account various factors that our board of directors deems relevant, including our financial condition, operating results, current and anticipated cash needs, plans for expansion and debt restrictions.

25




CAPITALIZATION

        The following table sets forth our capitalization as of March 31, 2004:

        You should read the information in this table together with our financial statements and notes and "Management's Discussion and Analysis of Financial Condition and Results of Operations" appearing elsewhere in this prospectus.

 
  As of March 31, 2004
 
 
  Actual
  As Adjusted
 
 
   
  (Unaudited)

 
 
  (In thousands, except share and per share data)

 
Cash, cash equivalents and investments available-for-sale   $ 15,110   $ 55,540  
   
 
 
Long-term obligations, less current portion   $   $  
   
 
 
Stockholders' equity:              
  Convertible preferred stock $.001 par value; 37,079,311 shares authorized and 25,825,826 issued and outstanding, actual; 7,500,000 shares authorized and no shares issued and outstanding as adjusted     70,150      
  Common stock, $.001 par value, 51,495,732 shares authorized; 2,472,495 shares issued and outstanding, actual; 120,000,000 shares authorized and 24,677,801 shares issued and outstanding as adjusted     2     25  
  Additional paid-in capital     21,536     132,093  
  Deferred compensation     (7,263 )   (7,263 )
  Accumulated deficit     (69,641 )   (69,641 )
   
 
 
    Total stockholders' equity     14,784     55,214  
   
 
 
      Total capitalization   $ 14,784   $ 55,214  
   
 
 

        The number of shares of common stock to be outstanding immediately after this offering is based on the number of shares outstanding as of March 31, 2004. This number excludes, as of March 31, 2004:

26



DILUTION

        If you invest in our common stock in this offering, your ownership interest will be diluted to the extent of the difference between the initial public offering price per share and the pro forma net tangible book value per share of our common stock after this offering. The historical net tangible book value of our common stock as of March 31, 2004 was approximately $14.8 million, or approximately $5.98 per share, based on the number of shares outstanding as of March 31, 2004. Historical net tangible book value per share is determined by dividing the number of outstanding shares of our common stock into our total tangible assets (total assets less intangible assets) less total liabilities.

        Investors participating in this offering will incur immediate, substantial dilution. After giving effect to the sale of common stock offered in this offering at the assumed public offering price of $7.50 per share, and after deducting the estimated underwriting discounts and estimated offering expenses payable by us, and after giving effect to the conversion of all outstanding shares of preferred stock into 16,205,306 shares of common stock upon completion of this offering, our pro forma as adjusted net tangible book value as of March 31, 2004 would have been approximately $55.2 million, or approximately $2.24 per share of common stock. This represents an immediate increase in pro forma as adjusted net tangible book value of $1.45 per share to existing stockholders and an immediate dilution of $5.26 per share to new investors participating in this offering. The following table illustrates this per share dilution:

Assumed initial public offering price per share         $ 7.50
Historical net tangible book value per share as of March 31, 2004   $ 5.98      
Pro forma decrease in net tangible book value per share attributable to conversion of convertible preferred stock   $ (5.19 )    
   
     
Pro forma net tangible book value per share before this offering   $ 0.79      
Pro forma increase in net tangible book value per share attributable to new investors   $ 1.45      
   
     
Pro forma as adjusted net tangible book value per share after this offering         $ 2.24
         
Pro forma dilution per share to new investors in this offering         $ 5.26
         

        The following table summarizes, on a pro forma as adjusted basis as of March 31, 2004, the differences between the number of shares of common stock purchased from us, the total consideration and the average price per share paid by existing stockholders and by new investors, after deducting estimated underwriting discounts and commissions and estimated offering expenses, at an assumed initial public offering price of $7.50 per share:

 
  Shares Purchased
  Total Consideration
   
 
  Average Price
Per Share

 
  Number
  Percent
  Amount
  Percent
Existing stockholders   18,677,801   76 % $ 71,203,000   64 % $ 3.81
New investors   6,000,000   24 %   40,430,000   36 %   6.74
   
 
 
 
     
  Total   24,677,801   100 % $ 111,633,000   100 % $ 4.52
   
 
 
 
     

        The discussion and tables above assume no exercise of the underwriters' over-allotment option or exercise of any outstanding options or warrants. If the underwriters' over-allotment option is exercised in full, the number of shares of common stock held by existing stockholders will be reduced to 73% of the total number of shares of common stock to be outstanding after this offering, and the number of shares of common stock held by new investors will be increased to 6,900,000 shares or 27% of the total number of shares of common stock to be outstanding after this offering.

27



        As of March 31, 2004, there were:

        To the extent that any of these options or warrants are exercised, new options are issued under our equity incentive plans or we issue additional shares of common stock in the future, there will be further dilution to new investors.

28



SELECTED FINANCIAL DATA

        The statements of operations data for the years ended December 31, 2001, 2002 and 2003 and the balance sheet data as of December 31, 2002 and 2003 have been derived from our audited financial statements, which have been audited by Ernst & Young LLP, an independent registered public accounting firm, and included elsewhere in this prospectus. Historical results are not necessarily indicative of future results. The statements of operations data for the years ended December 31, 1999 and 2000 and the balance sheet data as of December 31, 1999, 2000 and 2001 have been derived from our audited financial statements, which have been audited by Ernst & Young LLP, an independent registered public accounting firm, but are not included in this prospectus. The statements of operations data for the three months ended March 31, 2003 and 2004 and the balance sheet data as of March 31, 2004, are derived from our unaudited financial statements, which are included elsewhere in this prospectus. The following selected financial data should be read in conjunction with the financial statements and the notes to such statements and "Management's Discussion and Analysis of Financial Condition and Results of Operations."

 
  Years ended December 31,
  Three Months Ended March 31,
 
 
  1999
  2000
  2001
  2002
  2003
  2003
  2004
 
 
   
   
   
   
   
  (Unaudited)

  (Unaudited)

 
 
  (In thousands, except share and per share data)

 
Statements of Operations Data:                                            
Revenue under collaborative agreements   $   $ 115   $ 2,275   $ 7,327   $ 9,537   $ 2,203   $ 2,241  
Operating expenses:                                            
  Research and development     155     6,137     16,263     17,635     16,802     4,002     3,950  
  General and administrative     1,172     3,196     4,952     4,154     4,096     1,275     1,010  
  Stock-based compensation:                                            
    Research and development     84     1,854     1,240     540     1,293     248     593  
    General and administrative     12     372     378     158     4,997     30     1,687  
   
 
 
 
 
 
 
 
      Total operating expenses     1,423     11,559     22,833     22,487     27,188     5,555     7,240  
   
 
 
 
 
 
 
 
Loss from operations     (1,423 )   (11,444 )   (20,558 )   (15,160 )   (17,651 )   (3,352 )   (4,999 )
Interest income (expense), net     (10 )   699     329     339     198     56     40  
   
 
 
 
 
 
 
 
Net loss   $ (1,433 ) $ (10,745 ) $ (20,229 ) $ (14,821 ) $ (17,453 ) $ (3,296 ) $ (4,959 )
   
 
 
 
 
 
 
 

Basic and diluted net loss per share(1):

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 
 
Historical

 

$

(3.00

)

$

(12.30

)

$

(17.30

)

$

(9.60

)

$

(10.03

)

$

(1.97

)

$

(2.63

)
   
 
 
 
 
 
 
 
 
Pro Forma

 

 

 

 

 

 

 

 

 

 

 

 

 

$

(0.97

)

 

 

 

$

(0.27

)
                           
       
 
Shares used to compute basic and diluted net loss per share(1):                                            
 
Historical

 

 

477,368

 

 

873,241

 

 

1,169,134

 

 

1,544,268

 

 

1,739,380

 

 

1,672,311

 

 

1,887,674

 
   
 
 
 
 
 
 
 
 
Pro Forma

 

 

 

 

 

 

 

 

 

 

 

 

 

 

17,944,686

 

 

 

 

 

18,092,980

 
                           
       
 

(1)
Please see Note 1 to our financial statements for an explanation of the method used to calculate the historical and pro forma net loss per share and the number of shares used in the computation of the per share amounts.

29


 
  As of December 31,
   
 
 
  As of March 31, 2004
 
 
  1999
  2000
  2001
  2002
  2003
 
 
  (in thousands)

 
 
   
   
   
   
   
  (Unaudited)

 
Balance Sheet Data:                                      
  Cash, cash equivalents and investments available-for-sale   $ 11,051   $ 14,540   $ 24,726   $ 27,586   $ 17,058   $ 15,110  
  Working capital     10,915     12,345     20,862     22,667     15,160     12,532  
  Total assets     11,141     26,485     34,402     34,720     20,440     18,666  
  Long-term obligations             729     906          
  Accumulated deficit     (1,433 )   (12,179 )   (32,408 )   (47,229 )   (64,682 )   (69,641 )
  Total stockholders' equity     10,995     23,939     29,057     28,219     17,104     14,784  

30



MANAGEMENT'S DISCUSSION AND ANALYSIS
OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

         The following discussion and analysis of our financial condition and results of operations should be read together with our financial statements and related notes appearing elsewhere in this prospectus. This discussion and analysis contains forward-looking statements that involve risks, uncertainties and assumptions. The actual results may differ materially from those anticipated in these forward-looking statements as a result of many factors, including but not limited to those set forth under "Risk Factors" and elsewhere in this prospectus.

Overview

        We are a biotechnology company using proprietary taste receptor-based assays and screening technologies to discover and develop novel flavors and flavor enhancers for the packaged food and beverage industry. We believe our flavor ingredients will enable packaged food and beverage companies to improve the nutritional profile of their products and generate cost of goods savings, while maintaining or enhancing taste. We license our flavor ingredients to our collaborators on an exclusive basis, which we believe will provide these companies with the ability to differentiate their products. We have entered into product discovery and development collaborations with four of the world's leading packaged food and beverage companies: Campbell Soup Company, The Coca-Cola Company, Kraft Foods Global, Inc. and Nestlé SA. We currently anticipate that we will derive all of our revenues from existing and future collaborations. Our existing collaboration agreements provide for research and development funding, milestone payments based upon our achievement of research or development goals and, in the event of commercialization, royalties on future sales of consumer products incorporating our flavors and flavor enhancers. Our current programs focus on the development of savory, sweet and salt flavors or flavor enhancers. In addition, future collaboration agreements may provide for up-front license fees.

        We were incorporated in September 1998 and commenced operations in April 1999. Since that time, we have devoted substantially all of our resources to discovering and developing flavors and flavor enhancers for the packaged food and beverage industry.

        We have incurred significant losses since inception, with an accumulated deficit of $69.6 million as of March 31, 2004 primarily due to ongoing expenditures related to our research programs. We expect to incur additional losses over at least the next three years as we continue to develop flavors and flavor enhancers. Our results of operations have fluctuated from period to period and likely will continue to fluctuate substantially in the future based upon:

        We have a limited history of operations and, to date, we have not generated any revenues from sales of our flavors or flavor enhancers. We have financed our operations primarily through private placements of preferred stock as well as research and development payments and milestone payments under our product discovery and development collaborations.

        Our business is subject to significant risks, including but not limited to, the risks inherent in the regulatory approval process, the research and development process and competition from other products and technologies.

31



Revenue

        We derive revenue from our product discovery and development collaborations. Revenue under collaborative agreements has increased each year since our inception. To date, our revenue has come solely from research and development funding and milestone payments under our product discovery and development collaboration agreements with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé. As of March 31, 2004, we have recognized cumulative revenue under our collaborations of $21.5 million. If any of these collaborative agreements were to be terminated, this could have a significant effect on future revenues.

        In 2001, research and development payments represented all of our revenue. For the years 2002 and 2003, and the three months ended March 31, 2004, research and development payments were our primary source of revenue. Based on current collaborations, we anticipate that substantially all of our revenues in the near future will be derived from research and development payments, and we may receive additional milestone payments in the future upon the achievement of certain goals set forth in our collaboration agreements.

        In addition, in the event our collaborators launch products incorporating our flavors and flavor enhancers, we will receive royalty payments based upon the future sales of those products, which, if received, could be significantly larger than research and development funding or milestone payments. In order for us to generate royalty revenue and become profitable, we must retain our existing or establish new product discovery and development collaborations and our collaborators must commercialize products incorporating one or more of our flavors or flavor enhancers. Our ability to generate royalty revenue is uncertain and will depend upon our ability to meet particular research, development and commercialization objectives.

Research and Development

        Our research and development expenses consist primarily of costs associated with our discovery and development efforts in connection with our three primary programs, savory, sweet and salt. We track research and development costs by the type of cost incurred rather than by project. Research and development costs are comprised of salaries and other personnel related expenses, facilities and depreciation, research and development supplies, patent and licensing, and outside services. We charge research and development expenses to operations as incurred.

        The research and development payments we have received from our collaboration agreements with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé historically have not covered all of our research and development expenses. We expect that our research and development expenses are likely to increase in the future as a result of our existing product discovery and development collaborations, internal product discovery and development activities and technology development and any expansion of these activities.

        At this time, due to the risks inherent in the discovery of flavors and flavor enhancers, we are unable to estimate with any certainty the costs we will incur in the continued development of our flavors and flavor enhancers for commercialization. We generally estimate that the development of a flavor or flavor enhancer under one of our research and development programs will take from 3.5 to 7 years from initiation of research through FEMA GRAS determination. We estimate that we will receive FEMA GRAS determination on lead product candidates in our savory, sweet and salt programs in 12 to 18 months, 18 to 36 months and 30 to 60 months, respectively.

        We anticipate that we will make determinations regarding the research and development projects to pursue and the funding of each project on an ongoing basis in response to the progress of each discovery and development program, as well as an ongoing assessment of its market potential. We

32



cannot be certain when any net cash inflow from the commercialization of our flavors and flavor enhancers will commence.

        In 2000, we paid $2.5 million to acquire a perpetual license from Aurora for the rights to the use of certain assays and paid Incyte $6.5 million for access to Incyte's database for a three year period. The use of these assays and the receptors identified from the database have been utilized in our efforts with its collaborative partners. The license and database were determined to have alternative future uses and therefore, capitalized and amortized to research and development expense over the estimated useful life of the license and over the three years of the access to the database.

        Our ability to complete the development of our current product candidates is subject to many risks and uncertainties. These risks include the risks, among others, that:

        If we do not complete the development of our flavors and flavor enhancers on a timely basis, our collaborators may terminate or not renew our collaboration agreements, we may begin receiving revenue from the commercialization of products incorporating our flavors and flavor enhancers later than anticipated, or not at all, and it may be more difficult to enter into new collaboration agreements. In any of these cases, we may require substantial additional funding in order to continue development of our flavors and flavor enhancers.

General and Administrative

        General and administrative expenses consist primarily of salaries and other personnel related expenses related to legal, financial and other administrative functions. We expect that our general and administrative expenses will increase as a result of becoming a public company due to the additional reporting requirements imposed on public companies, particularly in light of recently enacted legislation such as the Sarbanes-Oxley Act of 2002 and related governmental and securities industry rules and regulations.

Stock-Based Compensation

        We have recorded deferred compensation for stock options and stock awards granted equal to the difference between the exercise price and the fair value of our common stock on the date of grant. We record options or awards issued to non-employees at their fair value in accordance with the Statement of Financial Accounting Standards No. 123, Accounting for Stock-Based Compensation , and periodically remeasure them in accordance with Emerging Issues Task Force No. 96-18, Accounting for Equity Instruments That Are Issued to Other Than Employees for Acquiring or in Conjunction with Selling Goods or Services , and recognize them over the service period. In connection with the grant of stock options to employees, we recorded deferred stock-based compensation of $13.3 million and $426,000 for the year ended December 31, 2003 and the three months ended March 31, 2004, respectively. We recorded these amounts as a component of stockholders' equity and will amortize them, on an accelerated basis, as a non-cash charge to operations over the vesting period of the options. We recorded employee and non-employee stock-based compensation expense of $1.6 million, $698,000, $6.3 million, $278,000 and $2.3 million for the years ended December 31, 2001, 2002 and 2003 and the three months ended March 31, 2003 and 2004, respectively. We expect that the charges to be recognized in future periods

33



from amortization of deferred compensation related to employee stock option grants will be $5.0 million, $2.4 million, $1.0 million and $146,000 for the years ending December 31, 2004, 2005, 2006 and 2007, respectively.

Results of Operations

Three Months Ended March 31, 2003 and 2004

        We recorded revenue of $2.2 million for each of the three months ended March 31, 2003 and 2004. Research and development payments under collaborations with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé accounted for 100% of total revenue for the three months ended March 31, 2004.

        Our research and development expenses were $4.0 million for each of the three months ended March 31, 2003 and 2004. Research and development expenses for the three months ended March 31, 2003 and 2004 are net of stock-based compensation expenses of $248,000 and $593,000, respectively. The $53,000 decrease in expenses from the three months ended March 31, 2003 to 2004 was primarily the result of the net effect of the following costs:

        Salaries and Personnel.     Our expenses for research and development personnel, including consultants, were $1.2 million and $1.6 million for the three months ended March 31, 2003 and 2004, respectively. The increase of $390,000 was primarily attributable to increased salaries and employee benefits expenses, offset in part by reduced consulting expenses. Our research and development staff increased from an average of 44 for the three months ended March 31, 2003 to an average of 57 for the three months ended March 31, 2004. The increase in staff was primarily to support the optimization of product candidates from our research programs.

        Facilities and Depreciation.     Our facilities and depreciation expenses were $1.0 million and $1.1 million for the three months ended March 31, 2003 and 2004, respectively. The increase of $58,000 was primarily attributable to expanding into additional space within our facility to accommodate our additional research and development personnel, offset by reduced depreciation expenses.

        Research and Development Supplies.     Our expenses for supplies used in research and development were $660,000 and $527,000 for the three months ended March 31, 2003 and 2004, respectively. The decrease of $133,000 was primarily attributable to reduced screening activity as our research and development activities advanced into certain less expensive optimization activities.

        Patent and Licensing.     Our patent and licensing expenses were $1.1 million and $391,000 for the three months ended March 31, 2003 and 2004, respectively. The decrease of $671,000 was primarily attributable to reduced licensing fees. Included in these costs was amortization of licenses totaling $752,000 for the three months ended March 31, 2003. The related licenses were fully amortized at December 31, 2003 and we therefore did not have any costs associated with the amortization of these licenses for the three months ended March 31, 2004.

        Outside Services.     Our outside service expenses were $32,000 and $272,000 for the three months ended March 31, 2003 and 2004, respectively. The increase of $240,000 was primarily attributable to outsourced chemical synthesis and analysis of product candidates in 2004.

        Our general and administrative expenses were $1.3 million and $1.0 million for the three months ended March 31, 2003 and 2004, respectively. General and administrative expenses for the three

34


months ended March 31, 2003 and 2004 are net of stock-based compensation expenses of $30,000 and $1.7 million, respectively. The $264,000 decrease in expenses from the three months ended March, 31 2003 to 2004 was primarily attributable to a decrease of $247,000 in personnel and related expenses and a decrease of $62,000 in outside legal fees, offset by an increase of $45,000 in office and miscellaneous costs.

        Our stock-based compensation expenses increased from $278,000 for the three months ended March 31, 2003 to $2.3 million for the three months ended March 31, 2004. The increase was due to the increase in fair value of options granted in 2003 as a result of this offering.

        Interest income was $90,000 and $40,000 for the three months ended March 31, 2003 and 2004, respectively. The decrease of $50,000 was primarily attributable to lower interest rates and lower average balances of cash, cash equivalents and investments available-for-sale. Interest expense was $34,000 and $0 for the three months ended March 31, 2003 and 2004, respectively. Interest expense decreased due to the payment in full of equipment financing debt in 2003.

Years Ended December 31, 2002 and 2003

        We recorded revenue of $7.3 million and $9.5 million for the years ended December 31, 2002 and 2003, respectively. The $2.2 million increase in revenue in 2003 was primarily attributable to a full year of research and development revenue under collaborations with Coca-Cola and Nestlé started in April 2002. Research and development payments and milestone payments under collaborations with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé accounted for 100% of total revenue in 2003.

        Our research and development expenses were $17.6 million and $16.8 million for the years ended December 31, 2002 and 2003, respectively. Research and development expenses for the years ended December 31, 2002 and 2003 are net of stock-based compensation expenses of $540,000 and $1.3 million, respectively. The $833,000 decrease in expenses from 2002 to 2003 was primarily the result of the net effect of the following costs:

        Salaries and Personnel.     Our expenses for research and development personnel, including consultants, were $5.0 million and $5.5 million for the years ended December 31, 2002 and 2003, respectively. The increase of $515,000 was primarily due to increased salaries and recruiting expenses. Our research and development staff increased from an average of 45 for the year ended December 31, 2002 to an average of 50 for the year ended December 31, 2003. The increase in staff was primarily to support the optimization of product candidates from our research programs.

        Facilities and Depreciation.     Our facilities and depreciation expenses were $3.1 million and $4.5 million for the years ended December 31, 2002 and 2003, respectively. The increase of $1.4 million was primarily attributable to expanding into additional space within our facility to accommodate additional research and development personnel hired for optimization of product candidates.

        Research and Development Supplies.     Our expenses for supplies used in research and development were $3.3 million and $2.3 million for the years ended December 31, 2002 and 2003, respectively. The decrease of $1.0 million was primarily attributable to reduced chemical library purchases and related

35



screening activity as our research and development activities advanced into certain less expensive compound optimization activities.

        Patent and Licensing.     Our patent and licensing expenses were $4.1 million and $3.7 million for the years ended December 31, 2002 and 2003, respectively. The decrease of $362,000 was primarily attributable to reduced outside patent legal fees. Included in these costs was amortization of licenses totaling $3.0 million and $2.9 million in 2002 and 2003, respectively. The related licenses are fully amortized at December 31, 2003.

        Outside Services.     Our outside service expenses were $2.0 million and $479,000 for the years ended December 31, 2002 and 2003, respectively. The decrease of $1.5 million was primarily attributable to the full year impact of the conclusion in 2002 of research and development support performed by Aurora, which totaled $2.0 million, partially offset by outsourced chemical synthesis and analysis of product candidates in 2003.

        Our general and administrative expenses were $4.2 million and $4.1 million for the years ended December 31, 2002 and 2003, respectively. General and administrative expenses for the years ended December 31, 2002 and 2003 are net of stock-based compensation expenses of $158,000 and $5.0 million, respectively. The $57,000 decrease in expenses from 2002 to 2003 was primarily attributable to a decrease of $492,000 in personnel and related expenses attributable to reduced business development activities and financing activities, offset by an increase of $280,000 in facility costs as a result of adding space and $155,000 in legal and miscellaneous costs.

        Our stock-based compensation expenses increased from $698,000 for the year ended December 31, 2002 to $6.3 million for the year ended December 31, 2003. The increase was a result of increased deferred compensation balances associated with this offering.

        Interest income was $496,000 and $268,000 for the years ended December 31, 2002 and 2003, respectively. The decrease of $228,000 was primarily attributable to lower interest rates and lower average balances of cash, cash equivalents and investments available-for-sale. Interest expense was $157,000 and $70,000 for the years ended December 31, 2002 and 2003, respectively. Interest expense decreased due to the payment in full of equipment financing debt in 2003.

Years Ended December 31, 2001 and 2002

        We recorded revenue of $2.3 million and $7.3 million for the years ended December 31, 2001 and 2002, respectively. The $5.1 million increase in revenue in 2002 was primarily attributable to new product discovery and development collaboration agreements with Coca-Cola and Nestlé started in April 2002. Research and development payments and milestone payments under collaborations with Campbell Soup, Coca-Cola, Kraft Foods, and Nestlé accounted for 100% of total revenue in 2002. Research and development payments under collaborations with Campbell Soup and Kraft Foods accounted for 100% of total revenue in 2001.

        Our research and development expenses were $16.3 million and $17.6 million for the years ended December 31, 2001 and 2002, respectively. Research and development expenses for the years ended

36


December 31, 2001 and 2002 are net of stock-based compensation expenses of $1.2 million and $540,000, respectively. The $1.3 million increase in expenses from 2001 to 2002 was primarily the result of the net effect of the following costs:

        Salaries and Personnel.     Our expenses for research and development personnel, including consultants, were $5.0 million and $5.0 million for the years ended December 31, 2001 and 2002, respectively. The decrease of $88,000 was primarily attributable to lower recruiting and relocation expenses offset by an increase in salary expense.

        Facilities and Depreciation.     Our facilities and depreciation expenses were $2.5 million and $3.1 million for the years ended December 31, 2001 and 2002, respectively. The increase of $600,000 was primarily attributable to increased depreciation expense associated with the purchase of screening related equipment in 2002 and increased general facilities costs.

        Research and Development Supplies.     Our expenses for supplies used in research and development were $1.8 million and $3.3 million for the years ended December 31, 2001 and 2002, respectively. The increase of $1.5 million was primarily attributable to increased chemical library purchases and related screening activity as our research and development programs advanced into increased levels of high-throughput screening.

        Patent and Licensing.     Our patent and licensing expenses were $4.2 million and $4.1 million for the years ended December 31, 2001 and 2002, respectively. The decrease of $130,000 was primarily attributable to reduced patent legal fees. Included in such costs was amortization of licenses totaling $3.0 million and $3.0 million in 2001 and 2002, respectively.

        Outside Services.     Our outside service expenses were $2.5 million and $2.0 million for the years ended December 31, 2001 and 2002, respectively. The decrease of $500,000 was primarily attributable to lower expenses related to reduced research and development support performed by Aurora, which was started in November 2000 and completed in October 2002.

        Our general and administrative expenses were $5.0 million and $4.2 million for the years ended December 31, 2001 and 2002, respectively. General and administrative expenses for the years ended December 31, 2001 and 2002 are net of stock-based compensation expenses of $378,000 and $158,000, respectively. The $798,000 decrease in expenses from 2001 to 2002 was primarily the result of costs totaling $585,000 related to an abandoned financing transaction, and a decrease of $380,000 in facility costs related to an increase in sublease payments, offset by a net increase of $167,000 in personnel and miscellaneous costs.

        Our stock-based compensation expenses were $1.6 million and $698,000 for the years ended December 31, 2001 and 2002, respectively. The $900,000 decrease was primarily the result of accelerated amortization of deferred compensation related to an abandoned financing transaction in 2001.

        Interest income was $375,000 and $496,000 for the years ended December 31, 2001 and 2002, respectively. The increase of $121,000 was primarily attributable to higher surplus cash, cash equivalents and investments available-for-sale as a result of the proceeds from our Series E financing in November 2001 and February 2002. Interest expense increased from $46,000 in 2001 to $157,000 in 2002 due to increased levels of equipment financing debt in 2002.

37


Liquidity and Capital Resources

        Since our inception, we have financed our business primarily through private placements of preferred stock, research and development payments under our product discovery and development collaborations with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé and interest income. As of March 31, 2004, we had received in excess of $70.0 million in proceeds from sales of preferred stock. In addition, we had received $22.3 million in non-refundable research and development payments and non-refundable milestone payments from our collaboration agreements and $1.9 million in interest income. Over the remaining life of our current collaboration agreements, we expect to receive an additional $14.2 million in non-refundable research and development payments from our collaborators. In addition, we anticipate we will receive payments in the event we achieve research or development milestones and royalty payments in the event our collaborators commercialize products incorporating our flavors and flavor enhancers. As of March 31, 2004, we had cash, cash equivalents and investments available-for-sale of approximately $15.1 million. Our funds are currently invested in operating accounts, money market funds and United States Treasury and government agency obligations.

        As of March 31, 2004, we had $15.1 million in cash and cash equivalents and investments available-for-sale as compared to $17.1 million as of December 31, 2003, a decrease of $1.9 million. This overall decrease resulted primarily from additional operating losses and capital equipment purchases. Net cash used in operating activities amounted to $2.0 million for the three months ended March 31, 2004, primarily reflecting the net loss occurring for this period of $5.0 million offset by non-cash charges for depreciation of $389,000, stock-based compensation expense of $2.3 million and net decrease of $329,000 in changes in operating assets and liabilities. Net cash provided by investing activities of $1.4 million for the three months ended March 31, 2004 resulted from maturities of available-for-sale securities of $1.8 million offset by $347,000 of equipment purchases. Net cash provided by financing activities was $360,000 for the three months ended March 31, 2004 reflecting proceeds from the exercise of common stock options.

        Our operating activities used cash of $8.7 million in the year ended December 31, 2002 and $8.3 million in the year ended December 31, 2003. Our use of cash for both periods resulted primarily from our losses from operations offset by depreciation and amortization adjustments of $4.8 million and $4.9 million for the years ended December 31, 2002 and 2003, respectively, and amortization of deferred compensation expense of $698,000 and $6.3 million for the years ended December 31, 2002 and 2003, respectively, and changes in our working capital accounts.

        Our investing activities provided cash of $8.1 million in the year ended December 31, 2002, compared to the use of cash of $1.7 million in 2003. Our investing activities in 2002 consisted of $2.4 million in purchases of property and equipment and $5.8 million in net purchase of investments. Our investing activities in 2003 consisted primarily of purchases of property and equipment of $552,000 and purchases and sales of investments for net proceeds of $2.2 million.

        Our financing activities provided cash of $14.0 million in 2002 and used cash of $1.7 million in 2003. Our financing activities in 2002 consisted primarily of the sale of preferred stock to private investors for net proceeds of $13.0 million. Our financing activities in 2003 consisted primarily of the payment in full of $1.8 million in equipment financing loans.

38



        The following summarizes our contractual obligations as of December 31, 2003 (in thousands):

 
  Payments due by period
   
   
 
  Total
  Less than
1 year

  1-3 years
  3-5 years
  More than
5 years

Operating leases   $ 12,331   $ 3,993   $ 8,337   $ 1   $
License payments     446     113     169     74     90
   
 
 
 
 
Total   $ 12,777   $ 4,106   $ 8,506   $ 75   $ 90
   
 
 
 
 

        As of March 31, 2004, we had no long-term debt obligations.

        Our future capital uses and requirements depend on numerous forward-looking factors. These factors may include but are not limited to the following:

    the rate of progress and cost of research and development activities;

    the number and scope of our research activities;

    the costs of filing, prosecuting, defending and enforcing any patent claims and other intellectual property rights;

    our ability to establish and maintain product discovery and development collaborations;

    the effect of competing technological and market developments;

    the terms and timing of any collaborative, licensing and other arrangements that we may establish; and

    the extent to which we acquire or in-license new products, technologies or businesses.

        We believe that the net proceeds of this offering, together with our existing capital resources, interest income and committed revenue from our existing collaborations, should be sufficient to fund our anticipated operating expenses and capital requirements for over 12 months.

        Until we can generate significant cash from our operations, we expect to continue to fund our operations with cash resources primarily generated from the proceeds of this offering and research and development payments and milestone payments under our product discovery and development collaborations. We estimate that the net proceeds from this offering will be approximately $40.4 million, based upon no exercise of the underwriters' over-allotment option and an assumed initial public offering price of $7.50 per share and after deducting estimated underwriting discounts and estimated offering expenses. Under our existing collaboration agreements, assuming all milestones are achieved and we receive all research and development funding, we may be entitled to payments which total up to $19.8 million. In the next twelve months, we anticipate receiving $6.9 million in research and development funding and $375,000 in milestone payments. We may not receive the payments if the collaborations are terminated or not renewed, or if we do not achieve the milestones set forth in the collaboration agreements. In addition, the timing of the receipt of milestone payments in particular is uncertain, as we may achieve milestones significantly earlier or later than we currently expect.

        We expect operating expenses to increase in the future as a result of anticipated increases in expenses for discovery, development, product optimization, regulatory and safety studies for flavors and flavor enhancers and expenses associated with being a public company. We cannot accurately predict the timing and amount of these expenses, which depend on several factors, and it is possible that we may seek additional financing. If we require additional capital to fund our operations and such financing is not available, we may need to curtail or cease operations. Alternatively, we may need to enter into financing arrangements, which could dilute our stockholders' ownership interests and adversely affect their rights.

39



        Since inception, we have not paid federal or state income taxes. As of December 31, 2003, we had federal net operating loss carryforwards of approximately $50.2 million, which begin to expire in 2019. As of December 31, 2003, the net operating loss carryforwards for state tax purposes were approximately $11.7 million, which begin to expire in 2009. Our utilization of the net operating losses may be subject to substantial annual limitations pursuant to Section 382 of the Internal Revenue Code, and similar state provisions, as a result of changes in our ownership structure. The annual limitations may result in the expiration of net operating losses and credits prior to utilization. Furthermore, our utilization of the net operating loss carryforwards will not have value unless and until we achieve profitability.

Critical Accounting Policies

        Our discussion and analysis of our financial condition and results of operations are based on our financial statements, which have been prepared in accordance with accounting principles generally accepted in the United States, or GAAP. The preparation of these financial statements requires management to make estimates and judgments that affect the reported amounts of assets, liabilities and expenses and related disclosure of contingent assets and liabilities. On an ongoing basis, we evaluate these estimates, including those related to revenue recognition, long-lived assets, accrued liabilities, and income taxes. These estimates are based on historical experience and various other assumptions that we believe to be reasonable under the circumstances, the results of which form the basis for judgments about the carrying values of assets and liabilities. Actual results may differ from these estimates under different assumptions or conditions. While our significant accounting policies are described in more detail in Note 1 to our financial statements included in this prospectus, we believe the following accounting policies to be critical to the judgments and estimates used in the preparation of our financial statements:

    Revenue Recognition.

        Our revenue recognition policies are in accordance with the SEC Staff Accounting Bulletin, or SAB, No. 101, Revenue Recognition in Financial Statements , which provides guidance on revenue recognition in financial statements, and is based on the interpretations and practices developed by the SEC, and EITF Issue 00-21, Revenue Arrangements with Multiple Deliverables . Many of our collaboration agreements contain multiple elements, including research and development funding, milestone payments and royalty obligations. As of March 31, 2004, we have not recognized any revenue from royalties.

        Revenue from milestone achievement is recognized when earned, as evidenced by written acknowledgment from the collaborator or other persuasive evidence that the milestone has been achieved, provided that: (i) the milestone event is substantive and its achievability was not reasonably assured at the inception of the agreement, and (ii) our performance obligations after milestone achievement will continue to be funded by the collaborator at the comparable level to before the milestone achievement. If both of these criteria are not met, the milestone payment is recognized over the remaining minimum period of our performance obligations under the agreement. Amounts received for research funding are recognized as revenues as the services are performed as long as the amounts received are not refundable regardless of the results of the research project. To date, all milestone payments have been recognized when earned.

    Stock-based Compensation.

        As permitted by SFAS No. 123, Accounting for Stock-Based Compensation , we account for stock options granted to employees using the intrinsic value method in accordance with Accounting Principles Board, or APB, Opinion No. 25, Accounting for Stock Issued to Employees , and the Financial Accounting Standards Board, or FASB, Interpretation No. 44, Accounting for Certain Transactions

40


Involving Stock Compensation—An Interpretation of APB 25 . Pursuant to these guidelines, we measure the intrinsic value of the option or restricted stock award on its grant date as the difference between the purchase price of the restricted stock or the exercise price of employee stock options and the fair market value of our stock on the date of issuance or grant, and expense the difference, if any, over the vesting period of the option or restricted stock award.

        SFAS No. 123 requires stock-based compensation to be accounted for under the fair value method. If we adopted SFAS No. 123 to account for options granted to employees under our stock-based compensation plans, our loss would have been materially impacted. The impact of this method is disclosed in the notes to the financial statements later in this prospectus.

        Options or stock awards issued to non-employees are recorded at their fair value in accordance with SFAS No. 123, and periodically remeasured in accordance with EITF No. 96-18, Accounting for Equity Instruments That Are Issued to Other Than Employees for Acquiring or in Conjunction with Selling Goods or Services , and recognized over the related service period.

        The above listing is not intended to be a comprehensive list of all of our accounting policies. In many cases, the accounting treatment of a particular transaction is specifically dictated by GAAP. There are also areas in which our management's judgment in selecting any available alternative would not produce a materially different result. See our audited financial statements and notes thereto included elsewhere in this prospectus, which contain accounting policies and other disclosures required by GAAP.

Recently Issued Accounting Standards

        In November 2002, the Emerging Issues Task Force, or EITF, finalized its tentative consensus on EITF Issue 00-21, Revenue Arrangements with Multiple Deliverables , which provides guidance on the timing and method of revenue recognition for sales arrangements that include the delivery of more than one product or service. EITF 00-21 is effective prospectively for arrangements entered into in fiscal periods beginning after June 15, 2003. The adoption of this consensus had no material impact on our revenue recognition policies or our financial statements.

        In December 2002, the FASB issued SFAS No. 148, Accounting for Stock-Based Compensation—Transition and Disclosure . SFAS No. 148 is an amendment to SFAS No. 123 providing alternative methods of transition for a voluntary change to the fair value based method of accounting for stock-based employee compensation and also provides additional disclosures about the method of accounting for stock-based employee compensation. SFAS No. 148 is effective for financial statements for the Company beginning January 1, 2003. The Company has currently chosen not to adopt the voluntary change to the fair value based method of accounting for stock-based employee compensation. If the Company should choose to adopt such a method, its implementation pursuant to SFAS No. 148 could have a material effect on the Company's financial position and results of operations.

Quantitative and Qualitative Disclosures About Market Risk

        Our primary exposure to market risk is interest income sensitivity, which is affected by changes in the general level of United States interest rates. Due to the nature of our short-term investments, we believe that we are not subject to any material market risk exposure. We do not have any foreign currency or other derivative financial instruments.

41




BUSINESS

Overview

        We are a biotechnology company using proprietary taste receptor-based assays and screening technologies to discover and develop novel flavors and flavor enhancers for the packaged food and beverage industry. We believe our flavor ingredients will enable packaged food and beverage companies to improve the nutritional profile of their products and generate cost of goods savings, while maintaining or enhancing taste. We license our flavor ingredients to our collaborators on an exclusive basis, which we believe we will provide these companies with the ability to differentiate their products. We have entered into product discovery and development collaborations with four of the world's leading packaged food and beverage companies: Campbell Soup Company, The Coca-Cola Company, Kraft Foods Global, Inc. and Nestlé SA. We currently anticipate that we will derive all of our revenues from existing and future collaborations. Our existing collaboration agreements provide for research and development funding, milestone payments based upon our achievement of research or development goals and, in the event of commercialization, royalties on future sales of consumer products incorporating our flavors and flavor enhancers. Our current programs focus on the development of savory, sweet and salt flavors or flavor enhancers. In addition, future collaboration agreements may provide for up-front license fees.

        Flavors are substances that impart tastes or aromas in foods and beverages. Individuals experience the sensation of taste when flavors in food and beverage products interact with taste receptors in the mouth. A taste receptor functions either by physically binding to a flavor ingredient in a process analogous to the way a key fits into a lock or by acting as a channel to allow ions to flow directly into a taste cell. As a result of these interactions, signals are sent to the brain where a specific taste sensation is registered. There are currently five recognized primary senses of taste: umami, which is the savory taste of glutamate, sweet, salt, bitter and sour.

        We are currently pursuing savory, sweet and salt flavor and flavor enhancer discovery and development programs. The goals of our savory program are to enhance the taste of naturally occurring glutamate and enable the reduction or elimination of added MSG. The goals of our sweet program are to enhance the taste of natural and artificial sweeteners and enable a significant reduction in added sweeteners. The goals of our salt program are to enhance the taste of salt and enable a significant reduction in added salt.

Industry Background

        Packaged food and beverage products include carbonated and non-carbonated beverages, frozen foods, snack foods, ice cream, pasta, canned soup and numerous other products. According to Euromonitor International, an independent research organization, worldwide sales of packaged food and beverage products in 2003 were approximately $1.2 trillion, of which $227 billion was generated in the United States. Based on these estimates, of the worldwide total, sales of packaged foods were approximately $906 billion and sales of non-alcoholic beverages were approximately $278 billion. Based on data from Euromonitor, Information Resources, Inc. and our collaborators' 2003 annual reports, we estimate that our collaborators' combined worldwide sales in 2003 of their products that fall within their exclusive product fields were $31 billion. Our collaboration agreements provide that we will receive a royalty of 1% to 4% on our collaborators' sales of products containing our flavors or flavor enhancers. However, our collaborators may not incorporate our flavors and flavor enhancers into all of their products within their exclusive product fields.

        Each of our flavors and flavor enhancers addresses large, potentially overlapping markets. The following table sets forth the three primary taste areas on which we are focused and, for each taste

42



area, provides examples of product categories that could incorporate ingredients in those taste areas, estimated worldwide sales, growth rates in 2003 and our estimates of the worldwide sales for food and beverage products that fall within our existing collaborators' exclusive product fields.


Taste Areas


 

Example Product Categories


 

2003 Estimated
Worldwide Sales(1)


 

Estimated
Growth
Rate Over
2002(1)


 

2003 Estimated
Revenues
Of Existing
Collaborators
In Exclusive
Product Fields(2)

Savory   Ready meals, sauces, spreads, frozen foods, beverages, meal replacements, soups, pastas, dried foods, snack foods, processed meats, processed cheeses and cracker products   $ 368 billion   4.4 % $ 6.4 billion

Sweet

 

Confectionaries, cereal, ice cream, beverages and bakery products

 

$

383 billion

 

4.6

%

$

15.7 billion

Salt

 

Product categories are the same as those set forth for savory flavor area

 

$

368 billion

 

4.4

%

$

9.1 billion

 

 

 

 

 

 

 

 

 

 

 
(1)
According to Euromonitor.

(2)
Based on data from Euromonitor, Information Resources, Inc. and our collaborators' 2003 annual reports.

        Flavors and flavor enhancers are used in a wide variety of packaged food and beverage products throughout the world. Flavors are substances that impart tastes or aromas in foods or beverages. Flavor enhancers are substances that supplement, enhance or modify the original flavor or aroma of foods, without necessarily imparting noticeable flavors or aromas. Flavors and flavor enhancers can originate from either naturally occurring or chemically synthesized compounds.

        While some packaged food and beverage companies have their own internal research and development programs, most have traditionally relied on purchases of flavors and flavor enhancers from third parties. Historically, flavors and flavor enhancers have been sold on a commodity basis by independent manufacturers who make their products broadly available to packaged food and beverage companies on a non-exclusive basis. This has limited the ability of packaged food and beverage companies to use flavors and flavor enhancers to differentiate their brands from competitors.

        Traditionally, flavor companies have discovered new flavors and flavor enhancers primarily using inefficient, non-automated and labor-intensive trial and error processes involving a limited number of trained taste testers. Using this approach, taste testers must physically taste each potential flavor and flavor enhancer compound to assess the taste characteristics of the compound. Taste testers can assess only a limited number of potential flavors or flavor enhancers at one time due to the sensory fatigue that results from repeated tasting. As a result, only a small fraction of the available universe of compounds can be tested economically.

        In the United States, most flavors and flavor enhancers are regulated as GRAS substances under the provisions of the Federal Food, Drug and Cosmetic Act, or FD&C Act. GRAS determinations for most new flavors and flavor enhancers are made by an independent panel of scientists administered by FEMA. Under the FEMA GRAS process we expect that for each of our flavors and flavor enhancers it will take 12 to 18 months and cost less than $1 million to conduct the safety studies and complete the review by the FEMA expert panel. Once a flavor or flavor enhancer is determined to be FEMA GRAS,

43



it may be immediately incorporated into products for test marketing and commercialization in the United States and in seven other countries.

        The packaged food and beverage industry is comprised of a number of large and highly competitive market segments. Small market share gains in specific large market segments can translate into significant additional revenue for packaged food and beverage companies. For example, according to Euromonitor, estimated 2003 worldwide sales of soft drinks are approximately $238.0 billion. Thus, an increase of a tenth of a percentage point in overall worldwide market share would result in additional revenue of approximately $238.0 million.

        As a result of these market opportunities, packaged food and beverage companies are constantly seeking ways to differentiate their products, demand for which can be greatly affected by very small actual or perceived improvements in flavor or health profiles. Flavors and flavor enhancers can potentially provide an important way to differentiate a particular product through enhanced taste, health benefits, flavor ingredient exclusivity and cost of goods savings.

Our Solution

        We use our proprietary taste receptor-based assays and screening technologies to discover and develop novel flavors and flavor enhancers. We have developed proprietary taste receptor-based assays that incorporate human taste receptors. We use these assays in our high-throughput screening systems to rapidly and efficiently screen our compound libraries and identify large numbers of novel potential

44



flavors and flavor enhancers. We believe our approach improves the likelihood that compounds with the desired characteristics can be discovered and then optimized into novel flavors and flavor enhancers.

        We believe our approach will result in the discovery and development of flavors and flavor enhancers that will provide the following valuable solutions to the following key challenges faced by the packaged food and beverage industry:

Our Strategy

        Our goal is to become the leader in discovering, developing and commercializing new and improved flavors and flavor enhancers. Key elements of our strategy include:

45


Our Product Development Process

        The following diagram summarizes our product development process and the estimated timing, based on our experiences to date and discussions with our collaborators, of each step in the process.

CHART

        The key elements of our product development process are:

46


        Following a FEMA GRAS determination, foods and beverages containing our proprietary flavors and flavor enhancers can be immediately commercialized in the United States. We anticipate, however, that our collaborators will test market their products containing our flavors and flavor enhancers through a series of consumer acceptance tests over a period of 6 to 12 months prior to initiating any wide-scale commercialization.

Our Flavor and Flavor Enhancer Programs

        We are currently pursuing the discovery and development of flavors and flavor enhancers through programs focused on savory, sweet and salt. The following diagram indicates the principal compounds we are developing in each program, and the current status of each compound.

CHART

        Using SavoryScreenHT, our high-throughput savory receptor-based assay system, we have identified two product candidates, S336 and S807, that enhance the savory taste of glutamate. We believe that these product candidates will enhance the taste of naturally occurring glutamate or enable the reduction or elimination of added MSG and inosine monophosphate, or IMP, an expensive savory enhancer of MSG taste, in a variety of foods and savory beverages, while maintaining or improving the desired savory taste.

        To demonstrate the taste properties of S336 and S807, we tested each compound against a reference sample consisting of MSG and IMP in amounts typically used in foods to impart a savory taste. We tasted this reference sample against test samples containing MSG and either S336 or S807 at concentrations of the test compound of up to 3 parts per million, or ppm, which is typical of the concentrations of FEMA GRAS flavors and flavor enhancers.

        In these tests, S336 enhanced the savory taste of MSG and, at the level used, was significantly more potent than IMP in the reference sample. In a separate test, a solution of S336 alone, in the absence of MSG and IMP, was found to be more savory than the reference sample. Based on these

47



results, we believe that the use of S336 may allow for a significant reduction or replacement of added MSG and IMP in savory foods. In separate tests, S807 also enhanced the savory taste of MSG and provided for a three-fold reduction in MSG levels, yet maintained the same savory taste of the reference sample. S336 and S807 have also each been shown to enhance the savory taste of MSG in a product prototype.

        Our collaborator has evaluated S336 and S807 for savory taste enhancement in product prototypes. S336 is approximately two times more potent than S807 in taste tests and exhibits greater water solubility compared to S807. Our collaborator is testing whether such solubility differences are important for savory enhancers in different types of savory packaged food products. Other characteristics, such as heat stability, are similar for the two compounds. Based on the results of such studies, our collaborator has formally selected both S336 and S807 for development and commencement of safety studies.

        We contracted for preliminary safety assessments to be performed on the structures of S336 and S807. Based on published safety data on compounds with related structures and the preliminary assessments, we believe that the use of either S336 or S807 in foods at a low concentration is unlikely to be associated with adverse effects in humans. We will further confirm the safety of these compounds through metabolism and 90-day sub-chronic safety studies in rodents according to FDA guidelines. We expect to initiate these safety studies in the second half of 2004. It is anticipated that the safety studies will be completed and a FEMA GRAS determination will be obtained by the end of the second quarter of 2005. As the safety studies undertaken to support a FEMA GRAS determination have not yet been completed, our conclusions regarding safety are necessarily preliminary and could be contradicted in the future.

        Using SweetScreenHT, our high-throughput sweet receptor-based assay system, we have identified S395 and S888, proof-of-concept compounds that enhance the sweet taste of sugar. We believe that the flavors and flavor enhancers we are developing in our sweet enhancer program will enhance the sweet taste of natural and artificial sweeteners used in a variety of packaged food and beverage products and may provide for a significant reduction in added sweetener in the finished product while maintaining or improving the desired sweet taste.

        To evaluate their taste effects, we tested the ability of S395 and S888 to enhance the sweet taste of sucrose sugar solutions in a series of taste tests. In the first series of tests, we tested 4% sucrose solutions, to which we separately added S395 and S888 at concentrations of 10 ppm and 3 ppm, respectively, against reference solutions of 4%, 6% and 8% sucrose.

        In these tests, both S395 and S888 enhanced the taste of a 4% sucrose solution such that it tasted sweeter than a 6% sucrose solution but less sweet than an 8% sucrose solution. In other tests, both S395 and S888 were found to enhance a mixture of fructose and glucose, typical of products sweetened using high fructose corn syrup.

        We are currently optimizing the enhancement activity and potency of S395 and S888 in order to achieve the same enhancing effects, but at less than 3 ppm. Using the structures of S395 and S888 as a guide, we will first create derivatives of S395 and S888 and then test them in the SweetScreenHT system. Optimized lead compounds with improved enhancement and/or potency will be subjected to taste tests. We plan to test the improved lead compounds in a variety of prototype products containing either natural or artificial sweeteners.

48



        Using SaltScreenHT, our high-throughput salt receptor-based assay, we have identified hundreds of compounds that enhance the activity of a taste receptor believed to be involved in the taste of salt. The goal of our salt enhancer program is to identify compounds that enhance the taste of salt and provides a significant reduction in sodium levels in a variety of foods while maintaining or improving the desired salt taste.

        We tested the most potent of the compounds identified by SaltScreenHT with our electrophysiology-based assay SaltScreenEP. This assay identifies compounds that specifically enhance the activity of ENaC, a taste receptor believed to be involved in the taste of salt. Based on our results, we selected compound S853 for further optimization.

        During 2003, we synthesized and tested over 1,000 derivatives of S853 in the SaltScreenEP system. The most potent compound, S969, is approximately 1,000-fold more potent than the original compound, S853. Our goal is to improve potency another 10-fold to 100-fold. We believe we will need to synthesize additional compounds to reach this goal and identify a taste proof-of-concept compound.

Product Discovery and Development Collaborations

        We pursue collaborations with leaders in the packaged food and beverage market. Under each of our current product discovery and development collaboration agreements, we have agreed to conduct research and develop flavors and flavor enhancers in one or more specified taste areas, such as savory, sweet or salt. Each of these collaborations is focused on one or more specific product fields, such as non-alcoholic beverages, wet soups, or frozen foods. To date, we have entered into product discovery and development collaborations with Campbell Soup, Coca-Cola, Kraft Foods and Nestlé.

        All of our current collaboration agreements provide for research and development funding, milestone payments upon achievement of pre-defined research or development targets and royalty payments based upon future product sales in the event the collaborator commercializes a product incorporating our flavors or flavor enhancers. The research and development funding under each of these agreements is paid according to a fixed payment schedule. Each of these collaborations provides us with a portion of the funding we require to pursue the discovery and development of flavors and flavor enhancers for the applicable program. Under each of these agreements, we are primarily responsible for the discovery, development and regulatory approval phases and any associated expenses, while our applicable collaborator is responsible for selecting the consumer products that may incorporate our flavors or flavor enhancers. Our collaborator is also responsible for manufacturing, marketing, selling and distributing any of these consumer products, and any associated expenses. We believe our collaborations will allow us to benefit from our collaborators' well-established brand recognition, global market presence, established sales and distribution channels and other industry-specific expertise. Each of our collaborations is governed by a joint steering committee, consisting of an equal number of representatives of the collaborator and us. The steering committees provide strategic direction and establish performance criteria for the research, development and commercialization of our flavors and flavor enhancers. All decisions of the steering committees must be unanimous.

        Each of our collaboration agreements provides that we will conduct research and development on flavors and flavor enhancers for use within clearly defined packaged food and beverage product fields on an exclusive basis for the collaborator during the collaborative period specified in each of the agreements. Our current product discovery and development collaborators are not prohibited from entering into research and development collaboration agreements with third parties in any product field. Under the terms of each agreement, we will retain rights to flavors and flavor enhancers that we discover during the collaboration for use with the collaborator, or for our use or with other collaborators outside of the defined product field. We will also retain rights to any flavors and flavor enhancers that we discover after the respective collaborative period. In addition, if the collaborator

49



terminates the agreement or fails after a reasonable time following regulatory approval or GRAS determination to incorporate one or more of our flavors or flavor enhancers into a product, it will no longer be entitled to use, and we will have the right to license, the flavors or flavor enhancers to other packaged food and beverage companies for use in any product field.

        Each of our agreements terminates when we are no longer entitled to royalty payments under the agreement. In addition, each agreement may be terminated earlier by mutual agreement or by either party in the event of a breach by the other party of its obligations under the agreement. Kraft Foods and Nestlé may each terminate their respective agreement without cause upon 60 days written notice, provided that it pay a specified termination fee if it terminates the agreement prior to the end of the research collaborative period. Campbell Soup may only terminate its agreement without cause on or after March 28, 2005 upon 60 days written notice, provided that it pay a specified termination fee if it terminates the agreement after March 28, 2005 but prior to the end of the collaborative period. Our agreement with Coca-Cola permits Coca-Cola to terminate the agreement upon specified major corporate events.

        In March 2001, we entered into a collaboration agreement with Campbell Soup, a global manufacturer and marketer of consumer food products, to work for a three-year collaborative period to discover specified flavors and flavor enhancers in the packaged food and beverage product fields of soups, including frozen soups. We later amended the agreement to add the product field of specified savory beverages in consideration for additional research and development payments and potential milestone and royalty payments. We also extended the collaborative period until the earlier of March 2006 or a GRAS determination, subject to earlier termination under specified circumstances.

        Under the terms of the collaboration, Campbell Soup has agreed to pay to us certain research and development funding. We are also eligible to receive a milestone payment upon our achievement of a specific product development goal. To date, we have received $6.7 million in research and development funding. If all milestones are achieved, and including all research and development funding paid or payable, we may be entitled to payments which total up to $10.1 million. In addition, in the event of commercialization, we are entitled to receive royalties on future net sales of products containing a discovered flavor or flavor enhancer from the date of introduction of each product in each country until 17 years thereafter or until the expiration of relevant patents in such country, whichever is earlier. We cannot assure you that we will receive any future milestone payments or royalties under this collaboration.

        In April 2002, we entered into a collaboration agreement with Coca-Cola, the world's largest beverage company, to work for a three-year collaborative period with Coca-Cola for the discovery and development of specified new flavors and flavor enhancers in the product field of soft drinks and other non-alcoholic beverages. In addition, we will work with Coca-Cola on a co-exclusive basis with Kraft Foods for the discovery and development of flavor enhancers in a specified food and beverage product field. In April 2004, we amended the agreement to extend the collaborative period until April 2008.

        Under the agreement, Coca-Cola has agreed to pay certain research and development funding over the collaborative period. We are also eligible to receive milestone payments upon our achievement of specific product discovery and development goals. To date, we have received $4.0 million in research and development funding. If all milestones are achieved, and including all research and development funding paid or payable, we may be entitled to payments which total up to $14.8 million. In addition, in the event of commercialization, we are entitled to receive royalties on future sales of products containing a discovered flavor or flavor enhancer until the expiration of relevant patents. We cannot

50



assure you that we will receive any future milestone payments or royalties under this collaboration. The collaborative period is subject to early conclusion by Coca-Cola upon 60 days written notice upon payment of a specified early conclusion fee, provided that Coca-Cola may terminate the collaborative period without payment of an early conclusion fee in the event that we fail to achieve a specified research and development goal by April 22, 2006, subject to payment of research funding through July 22, 2006. In the event of early conclusion, Coca-Cola will no longer be entitled to use, and we will have the right to license, any flavors or flavor enhancers discovered prior to such early conclusion to third parties for use in any product field, provided that Coca-Cola would retain non-exclusive rights in the field of non-alcoholic beverages with the exception of dry powdered beverages.

        In December 2000, we entered into a collaboration agreement with Kraft Foods, a global leader in branded foods and beverages. The collaborative period for the original product discovery and development program expired on its own terms in December 2003. However, prior to December 2003 we amended our collaboration agreement to provide for a new collaborative program through May 2005. Under this program, we will work with Kraft Foods for the discovery and development of flavor enhancers, on a co-exclusive basis with Coca-Cola in a specified food and beverage product field.

        Under the collaboration agreement, as amended, Kraft Foods has agreed to pay us certain research and development funding over a 4.5-year collaborative period. We are also eligible to receive milestone payments upon our achievement of specific product discovery and development goals. To date, we have received $6.4 million in research and development funding and one milestone payment of $375,000. If all milestones are achieved, and including all research and development funding paid or payable, we may be entitled to payments which total up to $8.6 million. In addition, in the event of commercialization, we are entitled to receive royalties on future net sales of products containing a discovered flavor or flavor enhancer from the date of introduction of each product in each country until the earlier of 17 years thereafter or until the expiration of relevant patents in such country. We cannot assure you that we will receive any further milestone payments or royalties under this collaboration.

        In April 2002, we entered into a collaboration agreement with Nestlé, the world's largest food company, to work for a three-year collaborative period to discover specified flavors and flavor enhancers in the food and beverage product fields of dehydrated and culinary food, frozen food and wet soup.

        Under the terms of the collaboration agreement, Nestlé has agreed to pay to us certain research and development funding over three years. We are also eligible to receive milestone payments upon our achievement by certain dates of specific product discovery and development goals. To date, we have received $5.2 million in research and development funding and three milestone payments of $375,000 each. If all milestones are achieved, and including all research and development funding paid or payable, we may be entitled to payments which total up to $9.6 million. In addition, in the event of commercialization, we are entitled to receive royalties on future net sales of products containing a discovered flavor or flavor enhancer from the date of introduction of each product in each country until the expiration of relevant patents. We cannot assure you that we will receive any further milestone payments or royalties under this collaboration.

51


Our Technology

        We have discovered or in-licensed many of the key receptors that mediate taste in mammals. Having isolated human taste receptors, we have created proprietary taste receptor-based assay systems that provide a biochemical or electronic readout when a test compound affects the receptor. To enable faster compound discovery, we integrated our proprietary taste receptor-based screening assays into a robot-controlled automated system that uses plates containing an array of individual fluid wells, each of which can screen a different compound. Our receptor-based discovery and development process has enabled us to improve our ability to find novel flavors and flavor enhancers over the traditional use of simple taste tests. We have synthesized and discovered hundreds of unique potential flavors and flavor enhancers.

        There are currently five recognized primary senses of taste: umami, which is the savory taste of glutamate, sweet, salt, bitter and sour. Scientists generally believe that each taste sensation is recognized by a distinct taste receptor or family of taste receptors in the mouth or on the tongue. A taste receptor functions either by physically binding to a flavor ingredient in a process analogous to the way a key fits into a lock or by acting as a channel to allow ions to flow directly into a taste cell. The brain recognizes tastes by determining which of the numerous receptors in the mouth have been contacted by a given flavor ingredient. Savory, sweet and bitter taste compounds bind to taste receptors specific to each taste on the surface of taste bud cells. In contrast, the taste of salt and the sour taste are thought to be recognized by taste channels that allow the passage of particular ions into the taste bud cells.

        We have developed proprietary taste receptor-based assay systems using the following human taste receptors:

52


        We have developed or acquired access to expansive libraries of potential flavors and flavor enhancers currently comprised of over 180,000 natural and synthetic compounds. In addition, we intend to acquire or develop additional compounds to add to our libraries. We have designed and selected our libraries to comprise compounds that we believe are likely to be safe and economical for use in packaged food and beverage products. We are using our SavoryScreenHT, SweetScreenHT, SaltScreenHT and SaltScreenEP assay systems to screen the compounds in our libraries for their effects on specific taste receptors. These systems use many of the same technologies that pharmaceutical companies use to discover medicines. We also use these systems to assist us in optimizing our lead compounds by rapidly and iteratively testing the potency of the flavors and flavor enhancers generated in the optimization process as the lead compound progresses to become a product candidate.

Regulatory Process

        Flavor compounds, including flavor enhancers, intended for use in foods in the United States are regulated under provisions of the FD&C Act administered by the FDA. Flavor compounds sold in countries and regions outside of the United States are also subject to regulations imposed by national governments or regional regulatory authorities as is the case in the European Union.

        In the United States, the majority of flavor compounds are regulated by the FDA as approved food additives, or as GRAS ingredients under the FD&C Act. The Food Additive Amendments of 1958 prompted the flavor industry to establish the Flavor and Extract Manufacturers Association, or FEMA, which has administered the GRAS program for flavors on behalf of the industry. Another possible route to approval of a flavoring compound would be a food additive petition to the FDA, however, few flavors are currently approved via this route. We believe that the flavor compounds, including flavor enhancers, we may discover will be subject to the FEMA GRAS review process as described below.

        GRAS Review Process.     Flavor compounds that qualify for the GRAS review process are generally intended to be consumed in small quantities and have data supporting their safety under conditions of intended use. An expert panel, convened to undertake a GRAS review, determines whether a compound is generally recognized as safe under the conditions of its intended use. These experts are qualified by scientific training and experience to evaluate the safety of chemicals used in food and may declare certain compounds as having been adequately shown through scientific procedures to be generally recognized as safe under the conditions of their intended use. Under the GRAS process, manufacturers are required to obtain safety data from the scientific literature or through the conduct of safety studies, determine the estimated daily intake of the flavor compound per person and submit a report to the GRAS review panel describing the physical, chemical, safety, and metabolic properties of the flavor compound. The entire GRAS determination process, including the safety and metabolic studies, application preparation and GRAS panel review, can take up to two years or longer. However, if there are prior safety data on the compound or a compound with a related structure, then fewer safety studies may be required for the GRAS review and the GRAS review process may be considerably faster than two years.

        The most common types of GRAS review are:

53


        The Food Additive Petition Process.     Food ingredients that are not GRAS may be considered food additives. Food additives require FDA approval prior to use in foods. A compound may be ineligible for FEMA GRAS determination, and may be considered a food additive, for a variety of reasons, including conditions of intended use resulting in high dietary exposure, use for purposes other than a flavor or flavor enhancer and the compound's safety profile. If the compound is considered a food additive, a food additive petition must be filed and approved by the FDA. Examples of compounds that have gone through a food additive petition include the artificial sweeteners Aspartame, Acesulfame K, and Sucralose, and the fat substitute Olestra. The food additive petition approval process for such food ingredients can take eight years or more. In the event that a particular flavor or flavor enhancer is not eligible for FEMA GRAS determination and therefore requires FDA approval prior to use, we will dedicate our development efforts to alternative compounds.

        There are three key benefits of the FEMA GRAS review process:

License Arrangements

        We have licensed rights from several companies and academic institutions, including the following:

        In March 2000, we entered into a license agreement with the University of California under which we obtained exclusive rights to certain technologies held by the University of California that are involved in the biology of taste, including specified receptors in two taste receptor families, T1Rs and T2Rs. The license may be converted to a non-exclusive license, or terminated, by the University of

54


California if we fail to meet specified milestones relating to the discovery of specified products and the sale of specified products and services. Our exclusive rights are also subject to rights granted by the University of California to the United States Government and a private medical foundation. The agreement calls for the payment of a license issue fee, payable in installments through 2005, annual maintenance fees commencing in 2006 and royalties or service revenues on sales of any products developed using technologies licensed under the agreement. Royalties will accrue in each country for as long as there exists a valid patent claim covering a product developed under the agreement. No royalty payments have accrued under the agreement to date. The agreement will remain in effect until the later of the expiration of the last to expire patent licensed under the agreement, or ten years from the date that the last product to be developed under the agreement is introduced to market in the United States. We may terminate the agreement at any time, without cause, upon notice to the University of California. The University of California may terminate the agreement upon a breach of our obligations under the agreement. In addition, we are in discussions with the University of California to amend the license agreement to include additional related technology related to the coexpression of T1R taste receptors.

        In November 2000, we entered into a technology collaboration and license agreement with Aurora to develop certain assay technologies, which was amended April 2002. Under the collaboration, we developed high-throughput screening assays using Aurora's proprietary screening technologies. The agreement terminated in October 2002 and Invitrogen Corporation subsequently acquired certain surviving rights and obligations under this agreement. Under the surviving terms of the agreement, we maintain exclusive rights to use certain proprietary screening technologies with our taste receptor targets for the discovery of flavors and flavor enhancers. These exclusive rights are subject to rights granted under other current and future license agreements in connection with the purchase of certain screening systems, as well as Invitrogen's right to grant licenses under its proprietary technology to academic, government and other non-profit organizations. Our rights with respect to the screening of flavors and flavor enhancers are fully paid-up and will remain in effect, except in the event that we breach any remaining obligations to Invitrogen under the agreement. In November 2000, Aurora purchased 1,000,000 shares of our Series C preferred stock for $4.8 million.

Competition

        Our goal is to be the leader in discovering flavors and flavor enhancers for use in a wide range of packaged food and beverage products. Other companies are possibly pursuing similar technologies and the commercialization of products and services relevant to flavors and flavor enhancers. Although we are not aware of any other companies that have the scope of proprietary technologies and processes that we have developed in our field, there are a number of competitors who possess capabilities relevant to the flavor and flavor enhancer field.

        In particular, we face substantial competition from companies pursuing the commercialization of products and services relevant to taste using more traditional methods for the discovery of flavors and flavor enhancers. These competitors include leading flavor companies, such as International Flavors & Fragrances Inc., Givaudan SA, Symrise, Quest International and Firmenich. These companies provide flavors and other products, such as oils, extracts and distillates, to consumer products companies for use in a wide variety of products including foods, beverages, confectionaries, dairy products and pharmaceuticals. We also face indirect competition from other companies such as Newly Weds Foods, Inc., a manufacturer of food coatings and seasonings for restaurants, airlines and the food services industry. We currently compete and will continue to compete in the future with these companies in collaborating with and selling flavor products and technologies to manufacturers of packaged food and beverage products. Many of these companies have substantially greater capital

55



resources, research and development resources and experience, manufacturing capabilities, regulatory expertise, sales and marketing resources, established relationships with consumer products companies and production facilities.

        We may in the future face competition from life sciences and other technology companies and other commercial enterprises. These entities engage as we do in biotechnology, biology or chemistry and could apply this technology to the discovery and development of flavors and flavor enhancers. We are aware of another company, Linguagen Corp., a privately-held company, that we believe is involved in research on sweetness potentiators, salt substitutes and bitter blockers, specifically adenosine 5' monophosphate, or AMP, and has announced research and development collaborations with The Solae Company and Perrigo Company in the field of flavor discovery and modification. While we do not believe that either of these collaborations is competitive with our product discovery and development efforts, we cannot guarantee that products developed as a result of our competitors' existing or future collaborations will not compete with our flavors and flavor enhancers.

        Universities and public and private research institutions are also potential competitors. While these organizations primarily have educational objectives, they may develop proprietary technologies related to the sense of taste or secure patent protection that we may need for the development of our technologies and products. We may attempt to license these proprietary technologies, but these licenses may not be available to us on acceptable terms, if at all.

        We are not aware of any sweet or salt enhancer that is commercially available or in development other than those we have discovered and are developing. Although savory flavor enhancers, such as IMP, are commercially available, they are not very potent, are expensive, are not patent protected and are sold as a commodity. However, our competitors, either alone or with their collaborative partners, may succeed in developing technologies or discovering flavors and flavor enhancers that are similar or preferable in the areas of, among others, effectiveness, safety, cost and ease of commercialization, and our competitors may obtain intellectual property protection or commercialize such products sooner than we do. Developments by others may render our product candidates or our technologies obsolete. In addition, our current product discovery and development collaborators are not prohibited from entering into research and development agreements with third parties in any particular field.

Patents and Proprietary Rights

        We will be able to protect our proprietary rights from unauthorized use by third parties only to the extent that our proprietary rights are described by valid and enforceable patents or are effectively maintained as trade secrets. Accordingly, we are pursuing and will continue to pursue patent protection for our proprietary technologies. As of March 31, 2004 we had 38 pending United States patent applications and 60 pending foreign applications covering various aspects of our proprietary technology. In addition, we have exclusive license agreements with Johns Hopkins University, The University of California, Incyte Corporation and Aurora covering an additional 28 issued United States patents, 17 pending United States patent applications, 20 issued foreign patents and 56 pending foreign applications.

        Our policy is to file patent applications and to protect technologies, inventions and improvements to inventions that are commercially important to the development of our business. For example, we may seek patent protection for receptors and nucleic acid sequences encoding receptors that are involved in taste and the use of such receptors to identify ingredients that modulate taste. We also rely on trademarks to protect our proprietary technology. Generally, United States patents have a term of 17 years from the date of issue or 20 years from the earliest claimed priority date, whichever is later, for patents issued from applications filed with the United States Patent and Trademark Office prior to June 8, 1995 or 20 years from the application filing date or earlier claimed priority date in the case of patents issued from applications filed on or after June 8, 1995. Patents in most other countries have a

56



term of 20 years from the date of filing the patent application. Our success depends significantly upon our ability to develop ingredients and technologies that are protected by our intellectual property and that do not infringe any competitor patents. We intend to continue to file patent applications as we discover and develop new flavors or flavor enhancers and technologies.

        Seeking and obtaining patents may provide some degree of protection for our intellectual property. However, our patent positions are highly uncertain and may involve complex legal and factual questions. No consistent standard regarding the allowability and enforceability of claims in many of the pending patent applications has emerged to date. As a result, we cannot predict the breadth of claims that will ultimately be allowed in our patent applications, if any, including those we in-licensed or how we may be able to enforce our patent claims against our competitors. In addition, we may not have been the first to file patent applications for or to invent inventions relating to the technologies upon which we rely, which would preclude us from obtaining issued patents on the relevant inventions. We are aware of other companies and academic institutions which have been performing research and have applied for patents in the area of mammalian taste. In particular, other companies and academic institutions have announced that they have identified taste receptors, published data on taste receptor sequence information or have filed patent applications on receptors and their use, including the University of California, Linguagen, Monell Chemical Senses, Mount Sinai School of Medicine, Scripps Research Institute and Warner Lambert. If any of these companies or academic institutions are successful in obtaining broad patent claims, such patents could potentially block our ability to use various aspects of our discovery and development process and might prevent us from developing or commercializing newly discovered flavors or flavor enhancers or otherwise conducting our business.

        We also rely in part on trade secret protection for our confidential and proprietary information and process. Our policy is to execute confidentiality agreements with our employees and consultants upon the commencement of an employment or consulting relationship. These agreements generally require that all confidential information developed by the individual or made known to the individual by us during the course of their employment shall be our exclusive property. However, there can be no assurance that we will be able to effectively enforce these agreements or that the subject proprietary information will not be disclosed.

        We are not a party to any litigation, opposition, interference, or other potentially adverse ex parte or inter-party governmental or non-governmental proceeding with regard to our patent and trademark positions. However, if we become involved in litigation, interference proceedings, oppositions or other intellectual property proceedings, for example as a result of an alleged infringement, or a third-party alleging an earlier date of invention, we may have to spend significant amounts of money and time and, in the event of an adverse ruling, we could be subject to liability for damages, invalidation of our intellectual property and injunctive relief that could prevent us from using technologies or developing products, any of which could have a significant adverse effect on our business financial condition and results of operation. In addition, any claims relating to the infringement of third-party proprietary rights, or earlier date of invention, even if not meritorious, could result in costly litigation, lengthy governmental proceedings, divert management's attention and resources and require us to enter royalty or license agreements which are not advantageous if available at all.

Sales and Marketing

        We do not currently intend to establish internal sales and marketing capabilities. Under our current collaboration agreements, our collaborators are responsible for sales, marketing, and distribution of any packaged food or beverage product incorporating our flavors and flavor enhancers. As a result, we expect to commercialize our flavors and flavor enhancers without incurring significant sales, marketing and distribution costs. Our four current collaborators, Campbell Soup, Coca-Cola, Kraft Foods and Nestlé, are recognized leaders in the sales, marketing, and distribution of packaged food and beverage products.

57



Manufacturing

        We intend to utilize third parties to manufacture our flavors and flavor enhancers. Under two of our existing product discovery and development collaborations, our collaborator may, in its sole discretion, manufacture itself or through a third party manufacturer the flavors or flavor enhancers it licenses from us. The remaining two agreements require the collaborator to identify with us a mutually agreed upon third party to manufacture the flavors or flavor enhancers it licenses from us. In all of these agreements, we maintain either the first right of negotiation or an option to manufacture based on provisions within the agreement.

        There are a number of reliable third party contract manufacturers available to produce our flavors and flavor enhancers. Our current product candidates are relatively simple structures making them easy and inexpensive to produce. We do not anticipate any capacity issues because of our low volume requirements and the number of reliable and available manufacturers.

Employees

        As of March 31, 2004, we had 73 full-time employees, including 25 with Ph.D. degrees. Of our full-time workforce, 54 employees are engaged in research and development and 19 are engaged in business development, finance and administration. We also retain outside consultants. None of our employees are covered by collective bargaining arrangements, and our management considers its relationships with our employees to be good. We have entered into employment letter agreements with Kent Snyder, Mark Zoller, Ph.D., Harry Leonhardt, Esq., John Poyhonen and Klaus Gubernator, Ph.D., the terms of which are included in this prospectus under the heading "Management—Employment Agreements."

Facilities

        We currently lease 86,962 square feet of laboratory and office space at 11099 North Torrey Pines Road, La Jolla, California 92037. Of this leased space, as of April 15, 2004 we subleased approximately 25,157 square feet to other companies. Our lease for this facility expires on December 31, 2006, with an option to renew for an additional period of five years. Our current monthly lease obligations for rent are approximately $246,000, which includes space that has been sublet to other companies. In addition, we are responsible for expenses associated with the use and maintenance of the building, such as utilities and common area maintenance. These costs vary each month, and historically have been approximately $124,000 per month. We believe that our existing facilities are adequate to meet our business requirements for the near-term and that additional space will be available on commercially reasonable terms, if required.

Legal Proceedings

        We are not a party to any material legal proceedings at this time.

58




MANAGEMENT

Executive Officers, Directors and Key Employees

        The following table sets forth information regarding our executive officers, directors and key employees:

Name

  Age
  Position
Kent Snyder   50   President, Chief Executive Officer and Director
Mark J. Zoller, Ph.D.   50   Chief Scientific Officer and Sr. Vice President, Research
Harry J. Leonhardt, Esq.   48   Vice President, General Counsel and Corporate Secretary
John Poyhonen   44   Vice President and Chief Financial and Business Officer
Klaus Gubernator, Ph.D.   50   Vice President, Development
Nigel R.A. Beeley, Ph.D.   53   Vice President, Discovery
Mark Leschly   35   Chairman of the Board
Lori Robson, Ph.D.   44   Director
David Schnell, M.D.   43   Director
Jay M. Short, Ph.D.   46   Director
Timothy Wollaeger   60   Director

Executive Officers

         Kent Snyder , President and Chief Executive Officer, joined us in June 2003 and has served as a member of our board of directors since that time. Prior to joining us, from October 2001 to June 2003, Mr. Snyder was retired. From July 1991 to October 2001, Mr. Snyder held various marketing and sales management positions with Agouron Pharmaceuticals, Inc., a Pfizer company. Mr. Snyder was President of Global Commercial Operations at Agouron. Prior to holding the position of President of Global Commercial operations, Mr. Snyder served as Senior Vice President of Commercial Affairs and Vice President of Business Development. Mr. Snyder received his B.S. from the University of Kansas and his M.B.A. from Rockhurst College.

         Mark J. Zoller, Ph.D. , joined us in March 2000 as Vice President of Research and was promoted to Senior Vice President of Research and Chief Scientific Officer in June 2001, which position he still holds. From May 1992 to December 1999, Dr. Zoller held a number of scientific management positions at ARIAD Pharmaceuticals, most recently as Senior Vice President, Genomics and Scientific Director of the Hoechst-ARIAD Genomics Center, which in December 1999 was acquired by Aventis Pharmaceuticals. Dr. Zoller received his B.A. in Chemistry from Pomona College and his Ph.D. in Chemistry from the University of California, San Diego.

         Harry J. Leonhardt, Esq. , Vice President, General Counsel and Corporate Secretary, joined us in September 2003. From February 2001 to February 2003, Mr. Leonhardt served as Executive Vice President of Business Development, General Counsel and Corporate Secretary of Genoptix, Inc. From July 1996 to November 2000, Mr. Leonhardt held senior management positions with Nanogen, Inc. and served most recently as Senior Vice President, General Counsel and Secretary. Mr. Leonhardt received his B.S. degree from the University of the Sciences in Philadelphia and his Juris Doctorate from the University of Southern California Law Center.

         John Poyhonen , Vice President and Chief Financial and Business Officer, joined us in October 2003 as Vice President and Chief Business Officer and was promoted in April 2004 to Vice President and Chief Financial and Business Officer. From 1996 until October 2003, Mr. Poyhonen served in various sales and marketing positions for Agouron Pharmaceuticals, a Pfizer company, most recently as Vice President of National Sales. Prior to holding this position, Mr. Poyhonen served as Vice President of Marketing and Vice President of National Accounts. Mr. Poyhonen received his B.A. in Marketing from Michigan State University and his M.B.A. from the University of Kansas.

59



Directors

         Mark Leschly has served as a member of our board of directors since November 2001 and as our Chairman since December 2002. Since July 1999, Mr. Leschly has been a Managing Partner with Rho Capital Partners, an investment and venture capital management company. Starting in July 1994 to July 1999, Mr. Leschly was an associate and then a General Partner of HealthCare Ventures, L.L.C., a venture capital management company. From September 1991 to June 1993, Mr. Leschly served as a consultant for McKinsey & Co., a management consulting company. Mr. Leschly received his B.A. from Harvard University and his M.B.A. from Stanford Graduate School of Business. In addition to being a director of Diversa Corporation, NitroMed, Inc. and Tercica, Inc., Mr. Leschly is a director of a number of private companies.

         Lori Robson, Ph.D. has served as a member of our board of directors since December 1999. In 1997, Dr. Robson joined Bay City Capital where she currently serves as Principal and Chief Investment Officer of the firm's North American Nutrition and Agribusiness Fund. Dr. Robson received her Ph.D. in Bacteriology from the University of Wisconsin at Madison and held an NIH post-doctoral fellowship at The Johns Hopkins University School of Medicine. She received her M.B.A. from the University of California Berkeley Haas School of Business. Dr. Robson serves as a director of Amerifit Nutrition, Inc. and VNUS Medical Technologies.

         David Schnell, M.D. has served as a member of our board of directors since December 1999. In 1997, Dr. Schnell co-founded and currently serves as a Managing Director of Prospect Venture Partners and Prospect Venture Partners II, venture capital funds dedicated to investing in biomedical and health care companies. Dr. Schnell received his M.D. from Harvard Medical School, his M.A. in health services research from Stanford University School of Medicine, and his B.S. in biological sciences from Stanford University. Dr. Schnell is a director of a number of private companies.

         Jay M. Short, Ph.D. has served as a member of our board of directors since March 2004. Dr. Short is the President and CEO of Diversa Corporation, a leader in applying proprietary genomic technologies for the rapid discovery and optimization of novel products from genes and gene pathways. He is a founding member of Diversa Corporation, has served as Chief Technology Officer and Director of the company since its inception in 1994. Dr. Short is a Director for Invitrogen, a leading biotechnology company in the area of gene expression and Stressgen Biotechnologies, focusing on the medical application of stress proteins. He previously served as Head of Research and Operations of Strategene Cloning Systems and President of their subsidiaries. Dr. Short received his Ph.D. in Biochemistry from Case Western Reserve University in Cleveland, Ohio and his B.A. with honors in Chemistry from Taylor University in Upland, Indiana.

         Timothy Wollaeger has served as a member of our board of directors since May 1999. Mr. Wollaeger has been a Managing Director of Sanderling Biomedical Ventures, an investment firm dedicated to building new biomedical companies, since 2002. Since 1994, he has also been the General Partner of Kingsbury Associates, L.P., a venture capital partnership. In 1990, Mr. Wollaeger helped found Columbia Hospital Corporation, now HCA Healthcare Corporation, and served as Senior Vice President and Director until 1993. Mr. Wollaeger received his M.B.A. from Stanford University and his B.A. in economics from Yale University. Mr. Wollaeger is chairman of the board of Biosite, Inc.

Key Employees

         Klaus Gubernator, Ph.D. , joined us as Vice President of Chemistry in June 2000 and became our Vice President, Development in June 2004. From November 1999 to June 2000, Dr. Gubernator was Executive Director of Advanced Technology at DuPont Pharmaceuticals Research Labs. From August 1997 until joining DuPont Pharmaceuticals, Dr. Gubernator was Vice President of Advanced Technology at CombiChem, Inc., where he directed the high-throughput synthesis laboratory as well as

60



internal discovery projects. Dr. Gubernator received his B.S., Master's Degree and Ph.D. in organic chemistry from the University of Heidelberg, Germany.

         Nigel R.A. Beeley, Ph.D. , joined us in June 2004 as Vice President, Discovery. From March 1999 through June 2004, Dr. Beeley served as Vice President, Chief Chemical Officer of Arena Pharmaceuticals, a biopharmaceutical company. From 1994 to 1998, Dr. Beeley was Senior Director of Chemistry at Amylin Pharmaceuticals, Inc., a biotechnology company, and, from 1988 to 1994, he served as Head of Oncology-Chemistry for Celltech, a biotechnology company. From 1980 to 1988, Dr. Beeley held positions of increasing seniority in the cardiovascular group at Synthelabo Research, a pharmaceutical company, and, from 1978 to 1980, he was a CNS medicinal chemist in the pharmaceutical division of Reckitt and Coleman, a conglomerate. From 1976 to 1978, Dr. Beeley held a Royal Society Overseas Research Fellow at ETH, Zurich, Switzerland. Dr. Beeley has a B.Sc. Honours (Class 1) degree in Chemistry from the University of Liverpool, U.K. and a Ph.D. in Chemistry from the University of Manchester, U.K.

Scientific Advisory Board

        Our scientific advisory board consists of four of our scientific founders and others with scientific expertise. The scientific advisory board generally advises us concerning long-term scientific planning, research and development, and also evaluates our research programs, recommends personnel to us and advises us on specific scientific and technical issues. The scientific advisory board meets at least once per year, and some individual scientific advisors consult with and meet informally with us on a more frequent basis. Our scientific advisors own shares of our common stock or have an option to purchase common stock and we have entered into consulting agreements with them.

        None of our scientific advisors is employed by us, and any or all of our advisors may have commitments to or consulting or advisory contracts with their employers or other entities that may conflict or compete with their obligations to us. Accordingly, these persons are expected to devote only a small portion of their time to us. The members of our scientific advisory board are:

61


Board Composition

        Our board of directors currently consists of six members. At each annual meeting of stockholders, the term of each director then serving shall expire, and the newly-elected directors shall serve from the time of election and qualification until the following annual meeting of stockholders and until their successors are duly elected and qualified. The authorized number of directors may be changed only by resolution of the board of directors. Our directors may be removed for cause by the affirmative vote of the holders of at least 66 2 / 3 % of our voting stock.

Board Committees

        Our board of directors has an audit committee, a compensation committee and a corporate governance and nominating committee.

        Our audit committee consists of Mark Leschly, Lori Robson, Ph.D. and Timothy Wollaeger. The functions of this committee include, among other things:

        We have appointed Timothy Wollaeger as our audit committee financial expert. Both our independent auditors and management periodically meet privately with our audit committee.

62



        Our compensation committee consists of Lori Robson, Ph.D., David Schnell, M.D. and Jay M. Short, Ph.D. The functions of this committee include, among other things:

        Our corporate governance and nominating committee consists of David Schnell, M.D., Jay M. Short, Ph.D. and Timothy Wollaeger. The functions of this committee include, among other things:

Compensation Committee Interlocks and Insider Participation

        No member of our compensation committee has ever been an officer or employee of ours. None of our executive officers currently serves, or has served during the last completed fiscal year, on the compensation committee or board of directors of any other entity that has one or more executive officers serving as a member of our board of directors or compensation committee. Prior to establishing the compensation committee, our full board of directors made decisions relating to compensation of our executive officers. See "Certain Transactions" for a description of transactions between us and entities affiliated with members of our compensation committee.

63



Director Compensation

        We have not provided cash compensation to our directors for their services as directors or members of committees of the board of directors. However, following the completion of this offering, we intend to provide cash compensation in the form of an annual retainer of $20,000 for our Chairman of the Board, and $15,000 for each other director. Each director shall also receive $2,000 for each in-person board of directors meeting attended, and $1,000 for each telephonic board of directors meeting attended. In addition, the chairperson of each committee shall receive $2,000 for each committee meeting attended, and each other committee member shall receive $1,000 for each committee meeting attended. We have reimbursed and will continue to reimburse our non-employee directors for their reasonable expenses incurred in attending meetings of our board of directors and committees of the board of directors.

        Effective upon the completion of this offering, our non-employee directors' nonstatutory stock option program will provide for the automatic grant of options to purchase shares of common stock to our non-employee directors. This program will be administered under our amended and restated 2004 equity incentive plan. In addition, all of our directors are generally eligible to participate in our 2004 equity incentive plan, and, following the completion of this offering, our employee directors will be eligible to participate in our 2004 employee stock purchase plan. For a more detailed description of the non-employee directors' nonstatutory stock option program and these plans, see "Benefit Plans."

Executive Compensation

        The following table sets forth in summary form information concerning the compensation that we paid during the fiscal year ended December 31, 2003 to our chief executive officer and to each of our other executive officers earning greater than $100,000 during the fiscal year ended December 31, 2003. We refer to these individuals in this prospectus as our "named executive officers."


Summary Compensation Table (1)

 
  Annual Compensation
  Long-Term Compensation
   
Name and Principal Position

  Salary
  Bonus(2)
  Other Annual
Compensation

  Restricted
Stock
Award(s)

  Securities
Underlying
Options/SARs

  LTIP Payouts
  All Other
Compensation

Kent Snyder
President, Chief Executive Officer and Director(3)
  $ 175,000   $ 49,597       570,227    

Mark Zoller, Ph.D.
Chief Scientific Officer and Sr. Vice President, Research

 

 

256,158

 

 

40,000

 


 


 


 


 


Klaus Gubernator, Ph.D.
Vice President, Development

 

 

226,775

 

 

17,500

 


 


 


 


 


(1)
In accordance with the rules of the SEC, the compensation described in this table does not include medical, group life insurance or other benefits that are available generally to all of our salaried employees and certain perquisites and other personal benefits received that do not exceed the lesser of $50,000 or 10% of any officer's salary and bonus disclosed in this table.

(2)
These amounts represent bonuses earned during the fiscal year ended December 31, 2003. Annual bonuses earned during a fiscal year are paid in the first quarter of the subsequent fiscal year.

(3)
Mr. Snyder began his employment with us in June 2003.

64


Stock Option Grants in Last Fiscal Year

        All options granted to our named executive officers are incentive stock options, to the extent permissible under the Internal Revenue Code of 1986, as amended. Generally, 25% of the shares subject to options vest one year from the date of hire and the remainder of the shares vest in equal monthly installments over the 36 months thereafter. Options expire ten years from the date of grant.

        The exercise price per share of each option granted to our named executive officers was equal to the fair market value of our common stock as determined by our board of directors on the date of the grant. In determining the fair market value of our common stock granted on the grant date, our board of directors considered many factors, including:

        The following table provides information regarding grants of options to purchase shares of our common stock to our named executive officers in the fiscal year ended December 31, 2003:

 
  Individual Grants
   
   
 
   
  % of Total Options Granted to Employees in the Year Ended December 31, 2003(1)
   
   
   
   
 
   
   
   
  Potential Realizable Value at Assumed Annual Rates of Stock Price Appreciation for Option Term(2)
 
  Number of Securities Underlying Options Granted
   
   
Name

  Exercise or Base Price ($/Sh)
  Expiration Date
  5%
  10%
Kent Snyder   570,227   64.2 % $ 0.74   06/16/13   $ 6,544,353   $ 10,670,515

Mark Zoller, Ph.D.

 


 


 

 


 


 

 


 

 


Klaus Gubernator, Ph.D.

 


 


 

 


 


 

 


 

 


(1)
Based on 888,702 options granted during the fiscal year ended December 31, 2003 under our amended and restated 2004 equity incentive plan, including grants to executive officers.

(2)
Potential realizable values are computed by (a) multiplying the number of shares of common stock subject to a given option by an assumed initial public offering price of $7.50 per share, (b) assuming that the aggregate stock value derived from that calculation compounds at the annual 5% or 10% rate shown in the table for the entire ten-year term of the option and (c) subtracting from that result the aggregate option exercise price. The 5% and 10% assumed annual rates of stock price appreciation are mandated by the rules of the SEC and do not represent our estimate or projection of future common stock prices.

65


Aggregated Option Exercises in Last Fiscal Year and Fiscal Year-End Option Values

        The following table provides information regarding the number of shares of common stock subject to exercisable and unexercisable stock options held as of December 31, 2003 by each of our named executive officers.

 
   
   
  Number of Securities Underlying Unexercised Options at Fiscal Year-End
  Value of Unexercised In-the-Money Options at Fiscal Year-End(1)
Name

  Shares Acquired on Exercise
  Value Realized
  Exercisable
  Unexercisable
  Exercisable
  Unexercisable
Kent Snyder       71,278   498,949   $ 482,173   $ 3,375,233

Mark Zoller, Ph.D.

 


 


 

47,809

 

41,946

 

 

287,453

 

 

258,237

Klaus Gubernator, Ph.D.

 


 


 

19,059

 

19,870

 

 

125,307

 

 

133,069

(1)
The value of an unexercised in-the-money option as of December 31, 2003 is equal to the excess of an assumed initial public offering price of $7.50 per share over the exercise price for the option, multiplied by the number of shares subject to the option, without taking into account any taxes that may be payable in connection with the transaction.

Employment Agreements

        We entered into an employment letter agreement with Kent Snyder dated June 2, 2003 providing for an annual salary of $350,000, later increased to $358,544, a discretionary bonus of up to 30% of the current base salary based upon performance against specific milestones to be designated by the board of directors, and upon commencement of employment the grant of an option to purchase our common stock under our amended and restated 2004 equity incentive plan constituting 4% of our outstanding shares on a fully diluted basis as of the date of grant assuming conversion of all outstanding preferred stock to common stock and including all shares reserved for issuance under our amended and restated 2004 equity incentive plan. The employment letter agreement provides that Mr. Snyder's employment is terminable at-will upon 30-days notice. However, if we terminate Mr. Snyder's employment for any reason other than cause, he will be entitled to one year's salary from the date of termination; and one year of accelerated vesting of his stock options if the termination is within one year of the employment commencement date. In the event of termination, within 36 months following a change in control, his stock options will immediately vest in full.

        We entered into an employment letter agreement with Mark Zoller, Ph.D., dated February 21, 2000, providing for an annual salary of $220,000, later increased to $266,289, and the opportunity to purchase 81,597 shares of restricted common stock. Under the terms of the agreement, Dr. Zoller received a one-time, sign-on bonus, payable on his first day of employment, equal to $210,000. The employment letter agreement provides that Dr. Zoller's employment is terminable at-will.

        We entered into an employment letter agreement with Harry Leonhardt, Esq., dated August 25, 2003, providing for an annual salary of $225,000, later increased to $228,162, a discretionary bonus of up to 25% of the current base salary based upon performance against specific milestones to be determined by the chief executive officer and, upon commencement of employment, the grant of an option to purchase 93,837 shares of our common stock. The employment letter agreement provides that Mr. Leonhardt's employment is terminable at-will upon 30-days notice. If a change in control occurs and Mr. Leonhardt's employment is terminated within one month prior or 18 months after the date of such change in control, Mr. Leonhardt's stock options will immediately vest in full.

        We entered into an employment letter agreement with John Poyhonen, dated September 8, 2003, providing for an annual salary of $225,000, later increased to $227,386, a discretionary bonus of up to

66



25% of the current base salary based upon performance against specific milestones to be determined by the chief executive officer and, upon commencement of employment, the grant of an option to purchase 93,837 shares of our common stock. The employment letter agreement provides that Mr. Poyhonen's employment is terminable at-will upon 30-days notice. If a change in control occurs and Mr. Poyhonen's employment is terminated within one month prior or 18 months after the date of such change in control, Mr. Poyhonen's stock options will immediately vest in full.

        We entered into an employment letter agreement with Klaus Gubernator, Ph.D., dated June 7, 2000, providing for an annual salary of $200,000, later increased to $235,744, and the opportunity to purchase 81,597 shares of restricted common stock. The employment letter agreement provides that Dr. Gubernator's employment is terminable at-will. However, if we terminate his employment without cause, Dr. Gubernator is entitled to three months' severance pay.

67



Employee Benefit Plans

        We adopted our 1999 equity incentive plan in January 1999 and our stockholders approved such plan in February 1999. We adopted the amendment and restatement of our 1999 equity incentive plan into the 2004 equity incentive plan, or the 2004 plan, in April of 2004, to become effective upon the completion of this offering. Our stockholders approved the 2004 plan in June 2004. All outstanding awards granted under the 1999 equity incentive plan shall remain subject to the terms of such plan. The 2004 plan will terminate in April 2014, unless our board of directors terminates it earlier. The 2004 plan provides for the grant of the following:

        Share Reserve.     An aggregate of 4,965,000 shares of our common stock are reserved for issuance under the 2004 Plan. This amount will be increased annually on the first day of our fiscal year, from 2005 until (and including) 2013, by the lesser of (1) 5% of the fully-diluted shares of common stock outstanding on the day preceding the first day of such fiscal year, (2) 1,700,000 shares of common stock or (3) such number of shares as may be determined by our board of directors.

        Shares subject to stock awards that expire, terminate, are repurchased, or are forfeited under the 2004 plan will again become available for the grant of awards under the 2004 plan. Shares issued under the 2004 plan may be previously unissued shares or reacquired shares bought on the market or otherwise. If any shares subject to a stock award are not delivered to a participant because such shares are withheld for the payment of taxes or the stock award is exercised through a "net exercise," the number of shares that are not delivered to the participant shall remain available for the grant of awards under the 2004 plan. If the exercise price of any stock award is satisfied by tendering shares of common stock held by the participant, the number of shares tendered shall remain available for the grant of awards under the 2004 plan. The maximum number of shares that may be issued under the 2004 plan subject to incentive stock options is 25,000,000.

        Administration.     The 2004 plan will be administered by our board of directors, who may in turn delegate authority to administer the 2004 plan to a committee. Subject to the terms of the 2004 plan, our board of directors or its authorized committee determines recipients, the numbers and types of stock awards to be granted and the terms and conditions of the stock awards, including the period of their exercisability and vesting. Subject to the limitations set forth below, our board of directors or its authorized committee will also determine the exercise price of options granted under the 2004 plan and may reprice such options, which includes reducing the exercise price of any outstanding option, canceling an option in exchange for cash or another equity award or any other action that is treated as a repricing under generally accepted accounting principles. Subject to the terms of the 2004 plan, our board of directors may delegate to one or more of our officers the authority to grant stock awards to our other officers and employees. Such officer would be able to grant only the total number of stock awards specified by our board of directors and such officer would not be allowed to grant a stock award to himself or herself.

        Stock Options.     Stock options are granted pursuant to stock option agreements. Generally, the exercise price for an incentive stock option cannot be less than 100% of the fair market value of the common stock on the date of grant. The exercise price for a nonstatutory stock option shall be

68



determined by our board of directors or its authorized committee. Options granted under the 2004 plan vest at the rate specified in the option agreement.

        In general, the term of stock options granted under the 2004 plan may not exceed ten years. Unless the terms of an optionee's stock option agreement provide for earlier or later termination, if an optionee's service relationship with us, or any affiliate of ours, ceases due to disability or death, the optionee, or his or her beneficiary, may exercise any vested options up to 12 months, or 18 months in the event of death, after the date such service relationship ends. If an optionee's service relationship with us, or any affiliate of ours, ceases without cause for any reason other than disability or death, the optionee may exercise any vested options up to three months from cessation of service, unless the terms of the stock option agreement provide for earlier or later termination. If an optionee's relationship with us, or any affiliate of ours, ceases with cause, the option will terminate at the time the optionee's relationship with us ceases. In no event may an option be exercised after its expiration date.

        Acceptable consideration for the purchase of common stock issued under the 2004 plan will be determined by our board of directors and may include cash, common stock previously owned by the optionee, the net exercise of the option, consideration received in a "cashless" broker-assisted sale and other legal consideration approved by our board of directors.

        Generally, an optionee may not transfer a stock option other than by will or the laws of descent and distribution unless the optionee holds a nonstatutory stock option that provides otherwise. However, an optionee may designate a beneficiary who may exercise the option following the optionee's death.

        Limitations.     Incentive stock options may be granted only to our employees. The aggregate fair market value, determined at the time of grant, of shares of our common stock with respect to incentive stock options that are exercisable for the first time by an optionee during any calendar year under all of our stock plans may not exceed $100,000. The options or portions of options that exceed this limit are treated as nonstatutory stock options. No incentive stock option may be granted to any person who, at the time of the grant, owns or is deemed to own stock possessing more than 10% of our total combined voting power or any affiliate unless the following conditions are satisfied:

        In addition, no employee may be granted options or stock appreciation rights under the 2004 plan covering more than 1,000,000 shares of common stock in any calendar year.

        Stock Purchase and Bonus Awards.     Stock purchase or bonus awards are granted through a purchase or bonus award agreement. Stock bonus awards may be granted in consideration for the recipient's past services for us. Subject to certain limitations, the purchase price for stock purchase or bonus awards must be at least the par value of our common stock. The purchase price for a stock purchase award may be payable in cash, by services rendered to us, or any other form of legal consideration approved by our board of directors. Common stock under a stock purchase or bonus award agreement may be subject to a share repurchase option or forfeiture right in our favor, each in accordance with a vesting schedule. If a recipient's service relationship with us terminates, we may reacquire or receive via forfeiture all of the shares of our common stock issued to the recipient pursuant to a stock purchase or bonus award which have not vested as of the date of termination. Rights to acquire shares under a stock purchase or bonus award may be transferred to the extent provided in the award agreement so long as the common stock awarded pursuant to the grant remains subject to the terms of the original award agreement.

69



        Stock Appreciation Rights.     Stock appreciation rights are granted through a stock appreciation right agreement. Each stock appreciation right is denominated in share equivalents. The strike price of each stock appreciation right is determined by our board of directors or its authorized committee at the time of grant of the stock appreciation right. Our board of directors or its authorized committee may also impose any restrictions or conditions upon the vesting of stock appreciation rights that it deems appropriate. Stock appreciation rights may be paid in our common stock or in cash or any combination of the two, or any other form of legal consideration approved by our board of directors. If a stock appreciation right recipient's relationship with us, or any affiliate of ours, ceases for any reason, the recipient may exercise any vested stock appreciation right up to three months from cessation of service, unless the terms of the stock appreciation right agreement provide for earlier or later termination.

        Stock Unit Awards.     Stock unit awards are purchased through a stock unit award agreement. Subject to certain limitations, the consideration, if any, for stock unit awards must be at least the par value of our common stock. The consideration for a stock unit award may be payable in any form permitted under applicable laws. Our board of directors or its authorized committee may impose any restrictions or conditions upon the vesting of stock unit awards, or that delay the delivery of the consideration after the vesting of stock unit awards, that it deems appropriate. Stock unit award may be settled in our common stock or in cash or any combination of the two, or any other form of legal consideration approved by our board of directors. Dividend equivalents may be credited in respect of shares covered by a stock unit award, as determined by our board of directors. At the discretion of our board of directors, such dividend equivalents may be converted into additional shares covered by the stock unit award. If a stock unit award recipient's service relationship with us terminates, any unvested portion of the stock unit award is forfeited upon the recipient's termination of service.

        Other Stock Awards.     Other forms of stock awards based on our common stock may be granted either alone or in addition to other stock awards under the 2004 plan. Our board of directors has sole and complete authority to determine the persons to whom and the time or times at which such other stock awards will be granted, the number of shares of our common stock to be granted and all other conditions of such other stock awards.

        Corporate Transactions.     In the event of certain corporate transactions, all outstanding stock awards under the 2004 plan may be assumed, continued or substituted for by any surviving entity. If the surviving entity elects not to assume, continue or substitute for such awards, the vesting provisions of such stock awards will be accelerated and such stock awards will be terminated if not exercised prior to the effective date of the corporate transaction. In general, an option grant will accelerate and vest in full if within 1 month prior to or 18 months following the effective date of a change in our control, an optionholder's continuous service is terminated without cause or the optionholder resigns for good reason. In addition, a stock award may be subject to acceleration of vesting in the event of a change in control as may be provided in an individual stock award agreement.

        Non-Employee Directors' Nonstatutory Stock Option Program.     The 2004 plan includes a non-employee directors' nonstatutory stock option program, or the directors' program. The directors' program provides for the automatic grant of nonstatutory stock options to our non-employee directors. In general, the directors' program provides the following:

70


        Plan Amendments.     Our board of directors will have authority to amend or terminate the 2004 plan. No amendment or termination of the 2004 plan shall adversely affect any rights under awards already granted to a participant unless agreed to by the affected participant. To the extent necessary to comply with applicable provisions of federal securities laws, state corporate and securities laws, the Internal Revenue Code, the rules of any applicable stock exchange or national market system, and the rules of any non-United States jurisdiction applicable to awards granted to residents therein, we shall obtain stockholder approval of any such amendment to the 2004 plan in such a manner and to such a degree as required.

        We adopted our 2004 employee stock purchase plan, or the ESPP, in April 2004, to become effective upon the closing of this offering. Our stockholders approved the ESPP in June 2004. The ESPP will terminate at the time that all of the shares of our common stock reserved for issuance under the ESPP have been issued under the terms of the ESPP, unless our board of directors terminates it earlier. The ESPP provides a means by which employees may purchase our common stock through payroll deductions, and is intended to qualify as an employee stock purchase plan within the meaning of Section 423 of the Internal Revenue Code.

        Share Reserve.     An aggregate of 140,000 shares of our common stock are reserved for issuance under the ESPP. This amount will be increased annually on the first day of our fiscal year, from 2005 until (and including) 2013, by the lesser of (1) 1% of the fully-diluted shares of common stock outstanding on the day preceding the first day of such fiscal year, (2) 280,000 shares of common stock or (3) such number of shares as may be determined by our board of directors.

        Administration.     The ESPP will be administered by our board of directors, who may in turn delegate authority to administer the ESPP to a committee.

71



        Offering.     The ESPP is implemented by offerings of rights to eligible employees. Under the ESPP, we may specify offerings with a duration of not more than 27 months, and may specify shorter purchase periods within each offering. The first offering will begin on the effective date of this offering and be approximately 24 months in duration with purchases occurring approximately every six months. An additional new offering will automatically begin on September 1, 2004 and every six months thereafter.

        Unless otherwise determined by the board of directors or its authorized committee, common stock is purchased for accounts of employees participating in the ESPP at a price per share equal to the lower of (1) 85% of the fair market value of a share of our common stock on the date of commencement of participation in the offering or (2) 85% of the fair market value of a share of our common stock on the date of purchase. Generally, all regular employees, including executive officers, who work more than 20 hours per week and are customarily employed by us for more than five months per calendar year may participate in the ESPP and may authorize payroll deductions of up to 15% of their earnings for the purchase of common stock under the ESPP.

        Limitations.     Eligible employees may be granted rights only if the rights, together with any other rights granted under employee stock purchase plans, do not permit the employee's rights to purchase our stock to accrue at a rate which exceeds $25,000 of the fair market value of the stock for each calendar year in which such rights are outstanding. In addition, no employee will be eligible for the grant of any rights under the ESPP if immediately after such rights are granted, such employee has voting power over 5% or more of our outstanding capital stock.

        Corporate Transactions.     In the event of certain corporate transactions, all outstanding purchase rights under the ESPP may be assumed or substituted for by any surviving entity. If the surviving entity elects not to assume or substitute for such purchase rights, then the purchase rights will be exercised prior to the corporate transaction and the ongoing offerings and purchase rights will terminate immediately following such exercise.

        Plan Amendments.     Our board of directors will have the authority to amend or terminate the ESPP. If the board determines that the amendment or termination of an offering is in the best interests of the Company and its stockholders, then the board may terminate any offering on any purchase date, establish a new purchase date with respect to any offering then in progress, amend the ESPP and the ongoing offering to reduce or eliminate a detrimental accounting treatment or terminate any offering and refund any money contributed back to the participants. To the extent necessary to comply with applicable provisions of federal securities laws, state corporate and securities laws, the Internal Revenue Code, the rules of any applicable stock exchange or national market system, and the rules of any non-United States jurisdiction applicable to awards granted to residents therein, we shall obtain stockholder approval of any such amendment to the ESPP in such a manner and to such a degree as required.

        We maintain a defined contribution employee retirement plan for our employees. The plan is intended to qualify as a tax-qualified plan under Section 401(k) of the Internal Revenue Code. Employees are eligible to participate immediately upon commencing service. The plan provides that each participant may contribute a percentage of his or her pre-tax compensation, up to a statutory limit, which is $13,000 for calendar year 2004. Participants that are 50 years or older can also make "catch-up" contributions, which in calendar year 2004 may be up to an additional $3,000 above the statutory limit. Participant contributions are held in trust as required by law. Individual participants may direct the trustee to invest their accounts in authorized investment alternatives. We may make discretionary matching contributions to the plan each year in an amount equal to a percentage of the participant's salary reduction contributions. In addition, we may make discretionary and special

72


contributions each year, although we have not done so to date. Each participant is fully vested in his or her salary reduction contributions and our special contributions to the plan.

Limitation of Liability and Indemnification

        Our amended and restated certificate of incorporation, which will become effective upon the completion of this offering, limits the liability of directors to the maximum extent permitted by Delaware law. Delaware law provides that directors of a corporation will not be personally liable for monetary damages for breach of their fiduciary duties as directors, except liability for any of the following acts:

        These limitations of liability do not apply to liabilities arising under federal securities laws and do not affect the availability of equitable remedies such as injunctive relief or rescission.

        Our amended and restated bylaws, which will become effective upon the completion of this offering, provide that we will indemnify our directors and executive officers, and may indemnify other officers, employees and other agents, to the fullest extent permitted by law. Our amended and restated bylaws also permit us to secure insurance on behalf of any officer, director, employee or other agent for any liability arising out of his or her actions in connection with his or her services to us, regardless of whether our amended and restated bylaws permit such indemnification. We have obtained a policy of directors' and officers' liability insurance.

        We have entered, and intend to continue to enter, into separate indemnification agreements with our directors and executive officers, in addition to the indemnification provided for in our amended and restated bylaws. These agreements, among other things, require us to indemnify our directors and executive officers for certain expenses, including attorneys' fees, judgments, fines and settlement amounts incurred by a director or executive officer in any action or proceeding arising out of their services as one of our directors or executive officers, or any of our subsidiaries or any other company or enterprise to which the person provides services at our request.

        At present we are not aware of any pending litigation or proceeding involving any director, officer, employee or agent where indemnification will be required or permitted. Furthermore, we are not aware of any threatened litigation or proceeding that might result in a claim for indemnification.

        Insofar as indemnification for liabilities arising under the Securities Act may be permitted to directors, executive officers or persons controlling us, we have been informed that in the opinion of the SEC such indemnification is against public policy as expressed in the Securities Act and is therefore unenforceable.

73




CERTAIN TRANSACTIONS

        The following is a description of transactions since our inception to which we have been a party, in which the amount involved in the transaction exceeds $60,000, and in which any of our directors, executive officers or holders of more than 5% of our capital stock had or will have a direct or indirect material interest, other than compensation, termination and change in control arrangements, which are described under "Management." We believe the terms obtained or consideration that we paid or received, as applicable, in connection with the transactions described below were comparable to terms available or the amounts that would be paid or received, as applicable, in arm's-length transactions.

Convertible Promissory Notes

        From February 1999 to April 1999, we issued convertible promissory notes in an aggregate principal amount of $999,550. The notes bore interest at the rate of 8% per annum and were ultimately converted into shares of our Series A preferred stock in connection with our Series A preferred stock financing in October 1999. The following directors and 5% stockholders received promissory notes in the following amounts:

Director

  Amount
Kevin J. Kinsella   $ 299,850
Lubert & Andrea Stryer     100,000
Entities affiliated with Domain Associates, LLC     299,850
Kingsbury Capital Partners, L.P. III     299,850

Preferred Stock Financing Transactions

        In October 1999, we sold 8,648,158 shares of Series A preferred stock at a purchase price of $1.4215 per share, comprised of $11,261,207 in cash and $1,032,150 in principal and interest under convertible promissory notes. Of the 8,648,158 shares of Series A preferred stock sold by us, a total of 7,522,589 shares were sold to our executive officers, directors and greater than 5% stockholders, and persons associated with them, listed in the table below for a total purchase price of $10,693,360. The shares of Series A preferred stock were sold under a Series A preferred stock purchase agreement dated October 1, 1999.

        In August 2000, we sold 2,605,326 shares of Series B preferred stock at a purchase price of $3.8497 per share. Of the 2,605,326 shares of Series B preferred stock sold by us, a total of 1,393,138 shares were sold to our executive officers, directors and greater than 5% stockholders, and persons associated with them, listed in the table below for a total purchase price of $5,363,163. The shares of Series B preferred stock were sold under a Series B preferred stock purchase agreement dated August 10, 2000.

        In November 2000, we sold 1,000,000 shares of Series C preferred stock to Aurora at a purchase price of $4.80 per share. The shares of Series C preferred stock were sold under a Series C preferred stock purchase agreement dated November 9, 2000.

        In January 2001, we sold 869,328 shares of Series D preferred stock to Incyte at a purchase price of $7.50 per share, which was offset by an equal payment made by us to Incyte under a separate technology collaboration agreement. The shares of Series D preferred stock were sold under a Series D preferred stock purchase agreement dated January 9, 2001.

        In November 2001 and February 2002, we sold 12,703,014 shares of Series E preferred stock at a purchase price of $2.8999 per share. Of the 12,703,014 shares of Series E preferred stock sold by us, a total of 11,151,235 shares were sold to our executive officers, directors and greater than 5% stockholders, and persons associated with them, listed in the table below for a total purchase price of

74



$32,337,466. The shares of Series E preferred stock were sold under a Series E preferred stock purchase agreement dated November 14, 2001, and amended on February 27, 2002.

        We entered into other agreements in connection with the Series A, Series B, Series C, Series D and Series E preferred stock purchase agreements. Under one of these agreements, our amended and restated investor rights agreement, some of our stockholders are entitled to registration rights. See "Description of Capital Stock—Registration Rights." Further, we agreed with certain stockholders to restrictions on the issuance and transfer of shares of our capital stock, and to voting rights relating to the election of directors, all of which restrictions and voting rights are not applicable to, and will terminate upon the closing of, this offering.

        The following table summarizes the shares of common stock and preferred stock purchased by our executive officers, directors and 5% stockholders and persons associated with them, through March 31, 2004. For a description of current beneficial ownership, see "Principal Stockholders."

 
   
  Preferred Stock
  Total Shares on an as-Converted Basis
Executive Officers, Directors and 5% Stockholders

  Common Stock
  Series A(1)
  Series B(2)
  Series E(3)
Merrill Lynch Ventures L.P. 2001         3,448,394   2,857,141
Rho Ventures(4)   67,317   703,482   186,021   2,413,877   2,438,973
Entities affiliated with Bay City Capital, L.L.C.(5)     2,110,446   499,441   1,137,970   2,031,155
Entities affiliated with Prospect Venture Partners, L.P.(6)     1,406,964   342,731   1,564,697   2,026,395
Entities affiliated with Domain Associates, L.L.C.(7)   61,195   1,758,599   129,880   862,099   1,552,065
Entities affiliated with Hambrecht & Quist(8)         1,724,198   1,428,571
Entities affiliated with Kingsbury Associates, L.P.(9)   61,198   1,055,223   235,065     598,678
Kent Snyder   142,795         142,795
Mark Zoller, Ph.D.   130,555         130,555
Klaus Gubernator, Ph.D.   120,522         120,522
Harry Leonhardt, Esq.   93,837         93,837
John Poyhonen   93,837         93,837

(1)
Each share of Series A preferred stock is convertible into 0.407989 shares of our common stock.

(2)
Each share of Series B preferred stock is convertible into 0.455032 shares of our common stock.

(3)
Each share of Series E preferred stock is convertible into 0.828543 shares of our common stock.

(4)
Mark Leschly is a managing partner of Rho Capital Partners, Inc., which is the investment advisor to Rho Management Trust I and as such exercises voting and investment control over the shares held by Rho Management Trust I. Mr. Leschly disclaims beneficial ownership of the shares held by Rho Management Trust I except to the extent of his pecuniary interest therein.

(5)
Lori Robson, Ph.D. is a principal of Bay City Capital, L.L.C., which controls The North American Nutrition and Agribusiness Fund, L.P., and disclaims beneficial ownership of the shares held by the fund except to the extent of her pecuniary interest in these entities.

(6)
Dr. Schnell is a managing member of Prospect Management Co., L.L.C., which serves as the general partner of Prospect Venture Partners, L.P., and disclaims beneficial ownership of any shares held by the funds except to the extent of his pecuniary interest in this entity.

75


(7)
Reflects shares held by Domain Partners IV, L.P. and DP IV Associates, L.P. Any one of the following managing members may make voting or investment decisions regarding the shares: James C. Blair, Brian H. Dovey, Kathleen K. Schoemaker and Jessie I. Treu. Each of these managing members disclaims beneficial ownership of these shares except to the extent of their pecuniary interest in these entities.

(8)
Reflects shares held by H&Q Healthcare Investors and H&Q Life Sciences Investors.

(9)
Reflects shares held by Kingsbury Capital Partners, L.P. III and Kingsbury Capital Partners, L.P. IV. Timothy Wollaeger is a general partner of Kingsbury Associates, L.P. and disclaims beneficial ownership of the shares held by entities associated with Kingsbury Associates, L.P. except to the extent of his pecuniary interest in these entities.

Participation in this Offering

        Certain of our existing stockholders have indicated an interest in purchasing up to an aggregate of 1,000,000 shares of our common stock in this offering. However, because indications of interest are not binding upon us or the prospective purchasers, these stockholders may not acquire any shares in this offering.

Other Related Party Transactions

        From our inception to March 31, 2004, we granted options to purchase an aggregate of 906,990 shares of common stock with exercise prices ranging from $0.74 to $2.45, and 163,194 restricted stock purchase rights at an exercise price of $0.35, to our current directors and executive officers.

        We have entered into indemnification agreements with each of our directors and executive officers, as described in "Management—Limitation of Liability and Indemnification."

76



PRINCIPAL STOCKHOLDERS

        The following table sets forth information regarding beneficial ownership of our capital stock by:

        The percentage ownership information shown in the table is based upon (1) shares outstanding as of March 31, 2004, (2) the conversion of all outstanding shares of our preferred stock into 16,205,306 shares of common stock upon the completion of this offering and (3) the issuance of 6,000,000 shares of common stock in this offering. The percentage ownership information assumes no exercise of the underwriters' over-allotment option and does not reflect the purchase of up to an aggregate of 1,000,000 shares of our common stock that certain of our existing stockholders have indicated an interest in purchasing in this offering. Because indications of interest are not binding upon us or the prospective purchasers, these stockholders may or may not acquire shares in this offering.

        Each individual or entity shown in the table has furnished information with respect to beneficial ownership. We have determined beneficial ownership in accordance with the SEC's rules. These rules generally attribute beneficial ownership of securities to persons who possess sole or shared voting power or investment power with respect to those securities. In addition, the rules include shares of common stock issuable pursuant to the exercise of stock options or warrants that are either immediately exercisable or exercisable on May 30, 2004, which is 60 days after March 31, 2004. These shares are deemed to be outstanding and beneficially owned by the person holding those options or warrants for the purpose of computing the percentage ownership of that person, but they are not treated as outstanding for the purpose of computing the percentage ownership of any other person. All of the options in this table are exercisable at any time but, if exercised, are subject to a lapsing right of repurchase until the options are fully vested. Unless otherwise indicated, the persons or entities identified in this table have sole voting and investment power with respect to all shares shown as beneficially owned by them, subject to applicable community property laws and except to the extent authority is shared by both spouses under applicable law.

77



        Except as otherwise noted below, the address for each person or entity listed in the table is c/o Senomyx, Inc., 11099 North Torrey Pines Road, La Jolla, California 92037.

 
   
  Percentage of Shares
Beneficially Owned

 
  Number of
Shares
Beneficially
Owned

Beneficial Owner

  Before
Offering

  After
Offering

Merrill Lynch Ventures LP 2001(1)   2,857,141   15.3 % 11.6
Rho Ventures(2)   2,438,973   13.1   9.9
Mark Leschly(2)   2,438,973   13.1   9.9
Entities affiliated with Bay City Capital, L.L.C.(3)   2,031,155   10.9   8.2
Lori Robson, Ph.D.(3)   2,031,155   10.9   8.2
Entities affiliated with Prospect Venture Partners, L.P.(4)   2,026,395   10.8   8.2
David Schnell, M.D.(4)   2,026,395   10.8   8.2
Entities affiliated with Domain Associates, L.L.C.(5)   1,552,065   8.3   6.3
Entities affiliated with Hambrecht & Quist(6)   1,428,571   7.6   5.8
Entities affiliated with Kingsbury Associates, L.P.(7)   598,678   3.2   2.4
Timothy Wollaeger(7)   598,678   3.2   2.4
Kent Snyder(8)   570,227   3.0   2.3
Mark Zoller, Ph.D.(9)   171,353   *   *
Klaus Gubernator, Ph.D.(10)   120,522   *   *
Jay M. Short, Ph.D.(11)   20,399   *   *
All directors and executive officers as a group (10 persons)(12)   8,165,375   42.6   32.5

*
Represents beneficial ownership of less than 1%.

(1)
The address for Merrill Lynch Ventures LP 2001 is 4 World Financial Center, 23rd Floor, New York, NY 10080.

(2)
Includes 50,488 shares of common stock subject to our right of repurchase as of May 30, 2004. Mark Leschly is a managing partner of Rho Capital Partners, Inc., which is the investment advisor to Rho Management Trust I and as such exercises voting and investment control over the shares held by Rho Management Trust I. Mr. Leschly disclaims beneficial ownership of the shares held by Rho Management Trust I except to the extent of his pecuniary interest therein. The address for the trust is 152 West 57th Street, 23rd Floor, New York, NY 10019.

(3)
Dr. Robson is a principal of Bay City Capital, L.L.C., which controls The North American Nutrition and Agribusiness Fund, L.P., and disclaims beneficial ownership of the shares held by the fund except to the extent of her pecuniary interest in these entities. The address for the fund is 750 Battery Street, Suite 400, San Francisco, CA 94111.

(4)
Dr. Schnell is a managing member of Prospect Management Co., L.L.C., which serves as the general partner of Prospect Venture Partners, L.P., and disclaims beneficial ownership of any shares held by the funds except to the extent of his pecuniary interest in this entity. The address for the fund is 435 Tasso Street, Suite 200, Palo Alto, CA 94305.

(5)
Reflects 1,532,462 shares held by Domain Partners IV, L.P. and 19,603 shares held by DP IV Associates, L.P. Any one of the following managing members may make voting or investment decisions regarding the shares: James C. Blair, Brian H. Dovey, Kathleen K. Schoemaker and Jessie I. Treu. Each of these managing members disclaims beneficial ownership of these shares except to the extent of their pecuniary interest in these entities. The address for Domain Associates is One Palmer Square, Princeton, NJ 08542.

78


(6)
Reflects 857,143 shares held by H&Q Healthcare Investors and 571,428 shares held by H&Q Life Sciences Investors. The address for Hambrecht & Quist is 30 Rowes Wharf, Suite 430, Boston, MA 02110.

(7)
Reflects 523,598 shares held by Kingsbury Capital Partners, L.P. III and 75,080 shares held by Kingsbury Capital Partners, L.P. IV. Mr. Wollaeger is a general partner of Kingsbury Associates, L.P. and disclaims beneficial ownership of the shares held by entities associated with Kingsbury Associates, L.P. except to the extent of his pecuniary interest in these entities. The address for Kingsbury Capital is 3655 Nobel Drive, Suite 490, San Diego, CA 92122.

(8)
Includes 427,431 shares of common stock subject to options exercisable within 60 days of March 31, 2004, all of which are not vested as of May 30, 2004. Also includes 12,118 shares of common stock subject to our right of repurchase as of May 30, 2004.

(9)
Includes 40,798 shares of common stock subject to options exercisable within 60 days of March 31, 2004, 11,177 shares of which are not vested as of May 30, 2004. Also includes 21,419 shares of common stock subject to our right of repurchase as of May 30, 2004.

(10)
Includes 17,523 shares of common stock subject to our right of repurchase as of May 30, 2004.

(11)
Includes 20,399 shares of common stock subject to our right of repurchase as of May 30, 2004.

(12)
Includes 468,229 shares of common stock subject to options exercisable within 60 days of March 31, 2004, 438,610 of which are not vested as of May 30, 2004. Also includes 309,625 shares of common stock subject to our right of repurchase as of May 30, 2004.

79



DESCRIPTION OF CAPITAL STOCK

        Upon the closing of this offering and the filing of our amended and restated certificate of incorporation, our authorized capital stock will consist of 120,000,000 shares of common stock, $0.001 par value per share, and 7,500,000 shares of preferred stock, $0.001 par value per share.

        The following is a summary of the rights of our common stock and preferred stock. This summary is not complete. For more detailed information, please see our amended and restated certificate of incorporation and bylaws, which are filed as exhibits to the registration statement of which this prospectus is a part.

Common Stock

        Based on the fact that we have 2,472,495 shares of common stock outstanding as of March 31, 2004, the conversion of preferred stock into 16,205,306 shares of common stock upon completion of this offering, the issuance of 6,000,000 shares of common stock in this offering and no exercise of options or warrants, there will be 24,677,801 shares of common stock outstanding upon completion of this offering.

        As of March 31, 2004, there were 957,008 shares of common stock subject to outstanding options under our amended and restated 2004 equity incentive plan, and 10,199 shares of common stock subject to outstanding warrants.

        As of March 31, 2004, we had approximately 99 record holders of our common stock.

        Each holder of common stock is entitled to one vote for each share on all matters submitted to a vote of the stockholders, including the election of directors. Our amended and restated certificate of incorporation and bylaws do not provide for cumulative voting rights. Because of this, the holders of a majority of the shares of common stock entitled to vote in any election of directors can elect all of the directors standing for election, if they should so choose.

        Subject to preferences that may be applicable to any then outstanding preferred stock, holders of common stock are entitled to receive ratably those dividends, if any, as may be declared from time to time by our board of directors out of legally available funds.

        In the event of our liquidation, dissolution or winding up, holders of common stock will be entitled to share ratably in the net assets legally available for distribution to stockholders after the payment of all of our debts and other liabilities and the satisfaction of any liquidation preference granted to the holders of any outstanding shares of preferred stock.

        Holders of common stock have no preemptive, conversion or subscription rights, and there are no redemption or sinking fund provisions applicable to the common stock. The rights, preferences and privileges of the holders of common stock are subject to, and may be adversely affected by, the rights of the holders of shares of any series of preferred stock which we may designate in the future.

80


        All of our outstanding shares of common stock are, and the shares of common stock to be issued in this offering will be, fully paid and nonassessable.

Preferred Stock

        Upon the closing of this offering, our board of directors will have the authority, without further action by the stockholders, to issue up to 7,500,000 shares of preferred stock in one or more series, to establish from time to time the number of shares to be included in each such series, to fix the rights, preferences and privileges of the shares of each wholly unissued series and any qualifications, limitations or restrictions thereon, and to increase or decrease the number of shares of any such series (but not below the number of shares of such series then outstanding).

        Our board of directors may authorize the issuance of preferred stock with voting or conversion rights that could adversely affect the voting power or other rights of the holders of the common stock. The issuance of preferred stock, while providing flexibility in connection with possible acquisitions and other corporate purposes, could, among other things, have the effect of delaying, deferring or preventing a change in control and may adversely affect the market price of the common stock and the voting and other rights of the holders of common stock. We have no current plans to issue any shares of preferred stock.

Warrants

        In connection with an equipment loan, warrants to purchase up to 10,199 shares of common stock at $2.45 per share were issued to and are exercisable by Silicon Valley Bank. The estimated fair market value of the warrants of $16,000 was recorded as a discount on the equipment loan and was amortized to interest expense over the term of the equipment loan.

Registration Rights

        After this offering, the holders of 16,205,306 shares of common stock and warrants to purchase 10,199 shares of common stock will be entitled to rights with respect to the registration of such shares under the Securities Act, under an amended and restated investor rights agreement. Under the terms of the amended and restated investor rights agreement, if we propose to register any of our securities under the Securities Act, either for our own account or for the account of other security holders exercising registration rights, these holders are entitled to notice of that registration and are entitled, subject to limitations, to include their shares in that registration. Commencing with the date that is six months after this offering, the holders may also require us to file a registration statement under the Securities Act with respect to their shares, and we are required to use our best efforts to effect a registration. Furthermore, the holders may require us to register their shares on a registration statement on Form S-3 when such form becomes available to us. Such registration rights terminate on the fifth anniversary of the date of this offering.

        Generally, we are required to bear all registration and selling expenses incurred in connection with any of the registrations described above. The registration rights are also subject to conditions and limitations, among them the right of the underwriters of a public offering to limit the number of shares included in the registration statement filed in connection therewith.

81



Delaware Anti-Takeover Law and Provisions of our Amended and Restated Certificate of Incorporation and Bylaws

        We are subject to Section 203 of the Delaware General Corporation Law. Section 203 generally prohibits a public Delaware corporation from engaging in a "business combination" with an "interested stockholder" for a period of three years after the date of the transaction in which the person became an interested stockholder, unless:

        Section 203 defines a business combination to include:

        In general, Section 203 defines an interested stockholder as any entity or person beneficially owning 15% or more of the outstanding voting stock of the corporation and any entity or person affiliated with or controlling or controlled by the entity or person.

        Provisions of our amended and restated certificate of incorporation and bylaws, which will become effective upon the completion of this offering, may delay or discourage transactions involving an actual or potential change in our control or change in our management, including transactions in which stockholders might otherwise receive a premium for their shares, or transactions that our stockholders might otherwise deem to be in their best interests. Therefore, these provisions could adversely affect the price of our common stock. Among other things, our amended and restated certificate of incorporation and bylaws:

82


        The amendment of any of these provisions would require approval by the holders of at least 66 2 / 3 % of our then outstanding common stock.

Nasdaq National Market Listing

        Our common stock has been approved for quotation on the Nasdaq National Market under the symbol "SNMX," subject to official notice of issuance.

Transfer Agent and Registrar

        The transfer agent and registrar for our common stock is Mellon Investor Services LLC. The transfer agent and registrar's address is 400 South Hope Street, 4th Floor, Los Angeles, CA 90071.

83




MATERIAL UNITED STATES FEDERAL INCOME
TAX CONSEQUENCES TO NON-UNITED STATES HOLDERS

        The following is a general discussion of the material United States federal income tax consequences of the ownership and disposition of our common stock to a non-United States holder. For purposes of this discussion, a non-United States holder is any holder that for United States federal income tax purposes is not a United States person. The term United States person means:

        If a partnership or other pass-through entity holds common stock, the tax treatment of a partner or member in the other entity will generally depend on the status of the partner or member and upon the activities of the partnership or other entity. Accordingly, we urge partnerships or other pass-through entities which hold our common stock and partners or members in these partnerships or other entities to consult their tax advisors.

        This discussion assumes that non-United States holders will hold our common stock issued pursuant to the offering as a capital asset (generally, property held for investment). This discussion does not address all aspects of United States federal income taxation that may be relevant in light of a non-United States holder's special tax status or special tax situations. United States expatriates, insurance companies, tax-exempt organizations and governments, dealers in securities or currency, banks or other financial institutions, investors whose functional currency is other than the United States dollar and investors that hold common stock as part of a hedge, straddle or risk-reduction transaction are among those categories of potential investors that are subject to special rules not covered in this discussion. This discussion does not address any tax consequences arising under the laws of any state, local or non-United States taxing jurisdiction. Furthermore, the following discussion is based on current provisions of the Internal Revenue Code, and Treasury Regulations and administrative and judicial interpretations thereof, all as in effect on the date hereof, and all of which are subject to change, possibly with retroactive effect. Accordingly, we urge each non-United States Holder to consult a tax advisor regarding the United States federal, state, local and non-United States income and other tax consequences of acquiring, holding and disposing of shares of our common stock. Additionally, we have not sought any ruling from the Internal Revenue Service, or IRS, with respect to statements made and conclusions reached in this discussion, and there can be no assurance that the IRS will agree with these statements and conclusions.

Dividends

        We have not paid any dividends on our common stock and we do not plan to pay any dividends for the foreseeable future. However, if we do pay dividends on our common stock, those payments will constitute dividends for United States tax purposes to the extent paid from our current or accumulated earnings and profits, as determined under United States federal income tax principles. To the extent those dividends exceed our current or accumulated earnings and profits, the dividends will constitute a

84



return of capital and will first reduce a holder's basis, but not below zero, and then will be treated as gain from the sale of stock.

        Any dividend (out of earnings and profits) paid to a non-United States holder of common stock generally will be subject to United States withholding tax either at a rate of 30% of the gross amount of the dividend or such lower rate as may be specified by an applicable tax treaty. In order to receive a reduced treaty rate, a non-United States holder must provide us with an IRS Form W-8BEN or other appropriate version of Form W-8 certifying qualification for the reduced rate.

        Dividends received by a non-United States holder that are effectively connected with a United States trade or business conducted by the non-United States holder are exempt from this withholding tax. In order to obtain this exemption, a non-United States holder must provide us with an IRS Form W-8ECI properly certifying this exemption. These effectively connected dividends, although not subject to withholding tax, are taxed at the same graduated rates applicable to United States persons, net of certain deductions and credits. In addition to the graduated tax described above, dividends received by a corporate non-United States holder that are effectively connected with a United States trade or business of the corporate non-United States holder may also be subject to a branch profits tax at a rate of 30% or such lower rate as may be specified by an applicable tax treaty.

        A non-United States holder of common stock that is eligible for a reduced rate of withholding tax pursuant to a tax treaty may obtain a refund of any excess amounts currently withheld if an appropriate claim for refund is filed with the IRS.

Gain on Disposition of Common Stock

        A non-United States holder generally will not be subject to United States federal income tax on any gain realized upon the sale or other disposition of our common stock unless:


Backup Withholding and Information Reporting

        Generally, we must report annually to the IRS the amount of dividends paid, the name and address of the recipient, and the amount, if any, of tax withheld. A similar report is sent to the holder. Pursuant to tax treaties or other agreements, the IRS may make its reports available to tax authorities in the recipient's country of residence.

        Payments of dividends or of proceeds on the disposition of stock made to a non-United States holder may be subject to backup withholding (currently at a rate of 28%) unless the non-United States holder establishes an exemption, for example, by properly certifying its non-United States status on a

85



Form W-8BEN or another appropriate version of Form W-8. Notwithstanding the foregoing, backup withholding may apply if either we or our paying agent has actual knowledge, or reason to know, that the holder is a United States person.

        Backup withholding is not an additional tax. Rather, the United States income tax liability of persons subject to backup withholding will be reduced by the amount of tax withheld. If withholding results in an overpayment of taxes, a refund may be obtained, provided that the required information is furnished to the IRS.

86




SHARES ELIGIBLE FOR FUTURE SALE

        Immediately prior to this offering, there has been no public market for our common stock. Future sales of substantial amounts of common stock in the public market could adversely affect prevailing market prices. Furthermore, since only a limited number of shares will be available for sale shortly after this offering because of contractual and legal restrictions on resale described below, sales of substantial amounts of common stock in the public market after the restrictions lapse could adversely affect the prevailing market price and our ability to raise equity capital in the future.

        Based on the number of shares of common stock outstanding as of June 7, 2004, upon completion of this offering, 24,737,064 shares of common stock will be outstanding, assuming no exercise of the underwriters' over-allotment option and no exercise of options or warrants. Certain of our existing stockholders have indicated an interest in purchasing up to an aggregate of 1,000,000 shares of our common stock in this offering. However, because indications of interest are not binding upon us or the prospective purchasers, these stockholders may not acquire any shares in this offering. All of the shares sold in this offering will be freely tradable unless held by an affiliate of ours and except for shares that may be purchased in this offering by certain of our existing stockholders that may be subject to a 180-day lock-up period. Except as set forth below, the remaining 18,737,064 shares of common stock outstanding after this offering will be restricted as a result of securities laws or lock-up agreements. These remaining shares will be available for sale in the public market roughly as follows:

Rule 144

        In general, under Rule 144 under the Securities Act as in effect on the date of this prospectus, a person who has beneficially owned shares of our common stock for at least one year would be entitled to sell within any three-month period a number of shares that does not exceed the greater of:

        Sales under Rule 144 are also subject to manner of sale provisions and notice requirements and to the availability of current public information about us.

Rule 144(k)

        Under Rule 144(k) of the Securities Act as in effect on the date of this prospectus, a person who is not deemed to have been one of our affiliates at any time during the 90 days preceding a sale, and who has beneficially owned the shares proposed to be sold for at least two years, including the holding period of any prior owner other than an affiliate, is entitled to sell the shares without complying with the manner of sale, public information, volume limitation or notice provisions of Rule 144. 5,000,083 shares of our common stock will qualify for resale under Rule 144(k) within 180 days of the date of this prospectus.

87



Rule 701

        Rule 701 under the Securities Act as in effect on the date of this prospectus, permits resales of shares in reliance upon Rule 144 but without compliance with certain restrictions of Rule 144, including the holding period requirement. Most of our employees, officers, directors or consultants who purchased shares under a written compensatory plan or contract may be entitled to rely on the resale provisions of Rule 701, but all holders of Rule 701 shares are required to wait until 90 days after the date of this prospectus before selling their shares. However, substantially all Rule 701 shares are subject to lock-up agreements as described below and under "Underwriting" and will become eligible for sale at the expiration of those agreements.

Lock-Up Agreements

        We, along with our directors, executive officers and substantially all of our stockholders, optionholders and warrantholders, have agreed with the underwriters that for a period of 180 days following the date of this prospectus, we or they will not offer, sell, assign, transfer, pledge, contract to sell or otherwise dispose of or hedge any shares of our common stock or any securities convertible into or exchangeable for shares of our common stock, subject to specified exceptions. Citigroup Global Markets Inc. may, in its sole discretion, at any time without prior notice, release all or any portion of the shares from the restrictions in any such agreement. Factors in deciding whether to release shares may include the length of time before the lock-up expires, the number of shares involved, the reason for the release, market conditions and the trading price of our common stock and whether the person seeking the release is an officer, director or affiliate of Senomyx. There are no agreements between Citigroup and any of our stockholders, optionholders or affiliates releasing them from these lock-up agreements prior to the expiration of the 180-day period.

Registration Rights

        Upon completion of this offering, the holders of 16,205,306 shares of our common stock and warrants to purchase 10,199 shares of our common stock will be entitled to rights with respect to the registration of their shares under the Securities Act, subject to the 180-day lock-up arrangement described above. Registration of these shares under the Securities Act would result in the shares becoming freely tradable without restriction under the Securities Act, except for shares purchased by affiliates, immediately upon the effectiveness of this registration. Any sales of securities by these stockholders could have a material adverse effect on the trading price of our common stock. See "Description of Capital Stock—Registration Rights."

Equity Incentive Plans

        We intend to file with the SEC a registration statement under the Securities Act covering the shares of common stock reserved for issuance under our amended and restated 2004 equity incentive plan, our 2004 non-employee directors' stock option plan, and our 2004 employee stock purchase plan. The registration statement is expected to be filed and become effective as soon as practicable after the completion of this offering. Accordingly, shares registered under the registration statement will be available for sale in the open market following its effective date, subject to Rule 144 volume limitations and the 180-day lock-up arrangement described above, if applicable.

88




UNDERWRITING

        Citigroup Global Markets Inc., is acting as bookrunning manager of the offering, and, together with Deutsche Bank Securities Inc., Needham & Company, Inc. and First Albany Capital Inc. are acting as representatives of the underwriters named below. Subject to the terms and conditions stated in the underwriting agreement dated the date of this prospectus, each underwriter named below has agreed to purchase severally, and we have agreed to sell to that underwriter, the number of shares set forth opposite the underwriter's name at a public offering price less the underwriting discounts set forth on the cover page of this prospectus.

Underwriter

  Number
of shares

Citigroup Global Markets Inc.    
Deutsche Bank Securities Inc.      
Needham & Company, Inc.    
First Albany Capital Inc.    
     
     
     
   
  Total   6,000,000
   

        The underwriting agreement provides that the obligations of the underwriters to purchase the shares included in this offering are subject to approval of legal matters by counsel and to other conditions. The underwriters are obligated to purchase all the shares (other than those covered by the over-allotment option described below) if they purchase any of the shares.

        The underwriters propose to offer some of the shares directly to the public at the public offering price set forth on the cover page of this prospectus and some of the shares to dealers at the public offering price less a concession not to exceed $        per share. The underwriters may allow, and dealers may reallow, a concession not to exceed $        per share on sales to other dealers. If all of the shares are not sold at the initial offering price, the representatives may change the public offering price and the other selling terms. The representatives have advised us that the underwriters do not intend sales to discretionary accounts to exceed five percent of the total number of shares of our common stock offered by them.

        We have granted to the underwriters an option, exercisable for 30 days from the date of this prospectus, to purchase up to 900,000 additional shares of common stock at the public offering price less the underwriting discounts set forth on the cover page of this prospectus. The underwriters may exercise the option solely for the purpose of covering over-allotments, if any, in connection with this offering. To the extent the option is exercised, each underwriter must purchase, subject to conditions, a number of additional shares approximately proportionate to that underwriter's initial purchase commitment. If any additional shares of common stock are purchased, the underwriters will offer the additional shares on the same terms as those on which the shares included in the offering are being offered.

        We, along with our directors, executive officers and substantially all of our stockholders, optionholders and warrantholders, have agreed that, except with respect to shares of our common stock purchased through the directed share program described below, for a period of 180 days from the date of this prospectus, we and they will not, without the prior written consent of Citigroup, dispose of or hedge any shares of our common stock or any securities convertible into or exchangeable for our common stock, subject to certain exceptions. The exceptions permit our officers, directors and our other stockholders, optionholders and warrantholders, subject to certain conditions, to transfer their shares to family members or, for holders that are not individuals, to distribute their shares to their

89



partners, members or stockholders. Citigroup in its sole discretion may release any of the securities subject to these lock-up agreements at any time without notice. Factors in deciding whether to release shares may include the length of time before the lock-up expires, the number of shares involved, the reason for the release, market conditions and the trading price of our common stock and whether the person seeking the release is an officer, director or affiliate of Senomyx.

        At our request, Citigroup Global Markets Inc. have reserved up to 5% of the shares of common stock for sale at the initial public offering price to persons who are directors, officers or employees, or who are otherwise associated with us through a directed share program. The number of shares of common stock available for sale to the general public will be reduced by the number of directed shares purchased by participants in the program. Any directed shares not purchased will be offered by Citigroup Global Markets Inc. to the general public on the same basis as all other shares of common stock offered. Directors and executive officers purchasing directed shares will be restricted from disposing of any directed shares for a period of 180 days from the date of this prospectus without the prior written consent of Citigroup, subject to certain exceptions. All other purchasers of directed shares will be subject to similar restrictions, but for a period of 30 days from the date of this prospectus, rather than 180 days. We have agreed to indemnify Citigroup Global Markets Inc. against certain liabilities and expenses, including liabilities under the Securities Act, in connection with the sales of the directed shares.

        Certain of our existing stockholders have indicated an interest in purchasing up to an aggregate of 1,000,000 shares of our common stock in this offering. However, because indications of interest are not binding upon us or the prospective purchasers, these stockholders may not acquire any shares in this offering.

        Prior to this offering, there has been no public market for our common stock. Consequently, the initial public offering price for the shares was determined by negotiations between us and the representatives. Among the factors considered in determining the initial public offering price were our record of operations, our current financial condition, our future prospects, our markets, the economic conditions in and future prospects for the industry in which we compete, our management and currently prevailing general conditions in the equity securities markets, including current market valuations of publicly traded companies considered comparable to our company. We cannot assure you, however, that the prices at which the shares will sell in the public market after this offering will not be lower than the initial public offering price or that an active trading market in our common stock will develop and continue after this offering.

        Our common stock has been approved for quotation on the Nasdaq National Market under the symbol "SNMX," subject to official notice of issuance.

        The following table shows the underwriting discounts and commissions that we are to pay to the underwriters in connection with this offering. These amounts are shown assuming both no exercise and full exercise of the underwriters' option to purchase additional shares of common stock.

 
  Paid by Senomyx, Inc.
 
  No Exercise
  Full Exercise
Per share   $                 $              
Total   $                 $              

        In connection with the offering, Citigroup on behalf of the underwriters, may purchase and sell shares of common stock in the open market. These transactions may include short sales, syndicate covering transactions and stabilizing transactions. Short sales involve syndicate sales of common stock in excess of the number of shares to be purchased by the underwriters in the offering, which creates a syndicate short position. "Covered" short sales are sales of shares made in an amount up to the number of shares represented by the underwriters' over-allotment option. In determining the source of

90



shares to close out the covered syndicate short position, the underwriters will consider, among other things, the price of shares available for purchase in the open market as compared to the price at which they may purchase shares through the over-allotment option. Transactions to close out the covered syndicate short position involve either purchases of the common stock in the open market after the distribution has been completed or the exercise of the over-allotment option. The underwriters may also make "naked" short sales of shares in excess of the over-allotment option. The underwriters must close out any naked short position by purchasing shares of common stock in the open market. A naked short position is more likely to be created if the underwriters are concerned that there may be downward pressure on the price of the shares in the open market after pricing that could adversely affect investors who purchase in the offering. Stabilizing transactions consist of bids for or purchases of shares in the open market while the offering is in progress.

        The underwriters also may impose a penalty bid. Penalty bids permit the underwriters to reclaim a selling concession from a syndicate member when Citigroup repurchases shares originally sold by that syndicate member in order to cover syndicate short positions or make stabilizing purchases.

        Any of these activities may have the effect of preventing or retarding a decline in the market price of the common stock. They may also cause the price of the common stock to be higher than the price that would otherwise exist in the open market in the absence of these transactions. The underwriters may conduct these transactions on the Nasdaq National Market or in the over-the-counter market, or otherwise. If the underwriters commence any of these transactions, they may discontinue them at any time.

        We estimate that our portion of the total expenses of this offering will be $1,420,000.

        Certain of the underwriters may have performed investment banking and advisory services for us from time to time for which they would have received customary fees and expenses. The underwriters may, from time to time, engage in transactions with and perform services for us in the ordinary course of their business.

        A prospectus in electronic format may be made available on the websites maintained by one or more of the underwriters. The representatives may agree to allocate a number of shares to underwriters for sale to their online brokerage account holders. The representatives will allocate shares to underwriters that may make Internet distributions on the same basis as other allocations. In addition, shares may be sold by the underwriters to securities dealers who resell shares to online brokerage account holders.

        We have agreed to indemnify the underwriters against certain liabilities, including liabilities under the Securities Act, or to contribute to payments the underwriters may be required to make because of any of those liabilities.

91



LEGAL MATTERS

        Cooley Godward LLP, San Diego, California, will pass upon the validity of the common stock offered by this prospectus for us. As of the date of this prospectus, investment funds affiliated with Cooley Godward LLP beneficially own an aggregate of 12,239 shares of our common stock. Cleary, Gottlieb, Steen & Hamilton, New York, New York, will pass upon legal matters for the underwriters.


EXPERTS

        Ernst & Young LLP, independent registered public accounting firm, have audited our financial statements at December 31, 2002 and 2003, and for each of the three years in the period ended December 31, 2003, as set forth in their report. We have included our financial statements in the prospectus and elsewhere in the registration statement in reliance upon Ernst & Young LLP's report, given on their authority as experts in accounting and auditing.


WHERE YOU CAN FIND ADDITIONAL INFORMATION

        We have filed with the SEC a registration statement on Form S-1 under the Securities Act with respect to the shares of common stock being offered by this prospectus. This prospectus does not contain all of the information in the registration statement and its exhibits. For further information with respect to Senomyx and the common stock offered by this prospectus, we refer you to the registration statement and its exhibits. Statements contained in this prospectus as to the contents of any contract or any other document referred to are not necessarily complete, and in each instance, we refer you to the copy of the contract or other document filed as an exhibit to the registration statement. Each of these statements is qualified in all respects by this reference.

        Our SEC filings, including the registration statement of which this prospectus is a part, are available on the Internet at the SEC's website at http://www.sec.gov. You may also read and copy any document we file with the SEC at its public reference facilities at 450 Fifth Street, N.W., Washington, D.C. 20549. You may also obtain copies of these documents at prescribed rates by writing to the Public Reference Section of the SEC at 450 Fifth Street, N.W., Washington, D.C. 20549. Please call the SEC at 1-800-SEC-0330 for further information on the operation of the public reference facilities.

        Upon completion of this offering, we will be subject to the information reporting requirements of the Securities Exchange Act of 1934, as amended, and we will file reports, proxy statements and other information with the SEC. These reports, proxy statements and other information will be available for inspection and copying at the public reference room and web site of the SEC referred to above. We also maintain a website at http://www.senomyx.com, at which you may access these materials free of charge as soon as reasonably practicable after they are electronically filed with, or furnished to, the SEC. The information contained in, or that can be accessed through, our website is not part of this prospectus.

92




Senomyx, Inc.

Index to Financial Statements

 
   
Report of Independent Registered Public Accounting Firm   F-2
Balance Sheets as of December 31, 2002 and 2003 and March 31, 2004 (unaudited)   F-3
Statements of Operations for the years ended December 31, 2001, 2002 and 2003 and the three months ended March 31, 2003 and 2004 (unaudited)   F-4
Statements of Stockholders' Equity for the years ended December 31, 2001, 2002, and 2003 and the three months ended March 31, 2004 (unaudited)   F-5
Statements of Cash Flows for the years ended December 31, 2001, 2002, and 2003 and the three months ended March 31, 2003 and 2004 (unaudited)   F-7
Notes to Financial Statements   F-8

F-1



Report of Independent Registered Public Accounting Firm

To the Board of Directors of Senomyx, Inc.

        We have audited the accompanying balance sheets of Senomyx, Inc. as of December 31, 2002 and 2003, and the related statements of operations, stockholders' equity and cash flows for each of the three years in the period ended December 31, 2003. These financial statements are the responsibility of the Company's management. Our responsibility is to express an opinion on these financial statements based on our audits.

        We conducted our audits in accordance with the standards of the Public Company Accounting Oversight Board (United States). Those standards require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. An audit includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements. An audit also includes assessing the accounting principles used and significant estimates made by management, as well as evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion.

        In our opinion, the financial statements referred to above present fairly, in all material respects, the financial position of Senomyx, Inc. at December 31, 2002 and 2003 and the results of its operations and its cash flows for each of the three years in the period ended December 31, 2003, in conformity with U.S. generally accepted accounting principles.

  /s/   ERNST & YOUNG LLP         

San Diego, California
March 23, 2004,
except for paragraph 1 of Note 8, as to which the date is
June 7, 2004
and paragraph 2 and 3 of Note 8, as to which the date is
June 15, 2004

 

 

F-2



Senomyx, Inc.

Balance Sheets

(In thousands, except share and per share data)

 
  December 31,
   
  Pro Forma
Stockholders'
Equity at
March 31, 2004

 
 
  March 31, 2004
 
 
  2002
  2003
 
 
   
   
  (Unaudited)

  (Unaudited)

 
Assets                          
Current assets:                          
  Cash and cash equivalents   $ 21,804   $ 13,493   $ 13,337        
  Investments available-for-sale     5,782     3,565     1,773        
  Other current assets     676     1,257     1,116        
   
 
 
       
Total current assets     28,262     18,315     16,226        

Property and equipment, net

 

 

3,590

 

 

2,125

 

 

2,083

 

 

 

 
Intangible assets, net     2,868                
Prepaid offering costs             357        
   
 
 
       
Total assets   $ 34,720   $ 20,440   $ 18,666        
   
 
 
       

Liabilities and stockholders' equity

 

 

 

 

 

 

 

 

 

 

 

 

 
Current liabilities:                          
  Accounts payable and accrued expenses   $ 2,121   $ 1,679   $ 2,283        
  Other current liabilities     54     61     70        
  Deferred revenue     2,566     1,415     1,341        
  Capital lease and loan obligations, net of discount     854                
   
 
 
       
Total current liabilities     5,595     3,155     3,694        

Capital lease and loan obligations, net of current portion and discount

 

 

906

 

 


 

 


 

 

 

 
Deferred rent         181     188        

Commitments

 

 

 

 

 

 

 

 

 

 

 

 

 
Stockholders' equity:                          
  Convertible preferred stock, $.001 par value; 37,079,311 shares authorized, 25,825,827 shares designated, 25,825,826 issued and outstanding at December 31, 2002 and 2003, and March 31, 2004; liquidation preference of $79,690     70,150     70,150     70,150      
  Common stock, $.001 par value, 51,495,732 shares authorized; 1,943,891, 2,020,736, and 2,472,495 shares issued and outstanding at December 31, 2002 and 2003, and March 31, 2004 (unaudited), respectively, 18,677,801 shares outstanding pro forma     2     2     2     19  
  Common stock issuable     3              
  Additional paid-in capital     5,575     20,173     21,536     91,669  
  Deferred compensation     (288 )   (8,540 )   (7,263 )   (7,263 )
  Accumulated other comprehensive income     6     1          
  Accumulated deficit     (47,229 )   (64,682 )   (69,641 )   (69,641 )
   
 
 
 
 
Total stockholders' equity     28,219     17,104     14,784   $ 14,784  
   
 
 
 
 
Total liabilities and stockholders' equity   $ 34,720   $ 20,440   $ 18,666        
   
 
 
       

See accompanying notes to financial statements.

F-3



Senomyx, Inc.

Statements of Operations

(In thousands, except share and per share data)

 
  Years Ended December 31,
  Three Months Ended March 31,
 
 
  2001
  2002
  2003
  2003
  2004
 
 
   
   
   
  (Unaudited)

  (Unaudited)

 
Revenue under collaborative agreements   $ 2,275   $ 7,327   $ 9,537   $ 2,203   $ 2,241  
Operating expenses:                                
  Research and development     16,263     17,635     16,802     4,002     3,950  
  General and administrative     4,952     4,154     4,096     1,275     1,010  
  Stock-based compensation:                                
    Research and development     1,240     540     1,293     248     593  
    General and administrative     378     158     4,997     30     1,687  
   
 
 
 
 
 
Total operating expenses     22,833     22,487     27,188     5,555     7,240  
   
 
 
 
 
 
Loss from operations     (20,558 )   (15,160 )   (17,651 )   (3,352 )   (4,999 )

Interest income

 

 

375

 

 

496

 

 

268

 

 

90

 

 

40

 
Interest expense     (46 )   (157 )   (70 )   (34 )    
   
 
 
 
 
 
Net loss   $ (20,229 ) $ (14,821 ) $ (17,453 ) $ (3,296 ) $ (4,959 )
   
 
 
 
 
 
Basic and diluted net loss per share   $ (17.30 ) $ (9.60 ) $ (10.03 ) $ (1.97 ) $ (2.63 )
   
 
 
 
 
 
Shares used to compute basic and diluted net loss per share     1,169,134     1,544,268     1,739,380     1,672,311     1,887,674  
   
 
 
 
 
 
Pro forma net loss per common share assuming conversion of preferred stock, basic and diluted               $ (0.97 )       $ (0.27 )
               
       
 
Shares used in computing pro forma net loss per common share assuming conversion of preferred stock, basic and diluted                 17,944,686           18,092,980  
               
       
 

See accompanying notes to financial statements.

F-4


Senomyx, Inc.

Statements of Stockholders' Equity

Years ended December 31, 2001, 2002 and 2003 and three months ended March 31, 2004

(In thousands, except share data)

 
  Preferred Stock
  Common Stock
   
   
   
   
   
   
 
 
  Common
Stock
Issuable

  Additional
Paid-in
Capital

  Deferred
Compensation

  Accumulated Other
Comprehensive
Income (Loss)

  Accumulated
Deficit

  Total
Stockholders'
Equity

 
 
  Shares
  Amount
  Shares
  Amount
 
Balance of December 31, 2000   13,122,812   $ 33,552   1,738,613   $ 2   $   $ 5,016   $ (2,452 ) $   $ (12,179 ) $ 23,939  
  Issuance of Series E Convertible preferred stock at $2.8999 per share for cash, net of issuance costs of $128   8,189,940     23,621                               23,621  
  Additional issuance costs for Series C and D convertible preferred stock and common stock       (26 )                             (26 )
  Issuance of common stock to employees related to the exercise of options         50,999             119                 119  
  Repurchase of common stock from employees         (20,355 )           (6 )               (6 )
  Issuance of warrants for equipment loan                     16                 16  
  Compensation related to restricted stock issued to consultants                     207                 207  
  Amortization of deferred compensation                         1,409             1,409  
  Reduction of deferred compensation for unvested employee common stock shares repurchased                     (47 )   47              
  Compensation related to common stock issuable related to license agreement                 4                     4  
  Compensation related to common stock issuable to consultant                 2                     2  
  Net loss and comprehensive loss                                 (20,229 )   (20,229 )
   
 
 
 
 
 
 
 
 
 
 
Balance at December 31, 2001   21,312,752     57,147   1,769,257     2     6     5,305     (996 )       (32,408 )   29,056  
  Issuance of Series E Convertible preferred stock at $2.8999 per share for cash, net of issuance costs of $85   4,513,074     13,003                               13,003  
  Issuance of common stock related to license agreement         1,632         (4 )   4                  
  Issuance of common stock to consultants         1,020         (2 )   2                  
  Issuance of common stock to employees related to the exercise of options         218,225             290                 290  
  Repurchase of common stock from employees         (46,243 )           (16 )                   (16 )
  Compensation related to restricted stock issued to consultants                     63                 63  
  Compensation related to common stock issuable related to license agreement                 3                     3  
  Amortization of deferred compensation                         635             635  
  Reduction of deferred compensation for unvested employee common stock shares repurchased                     (73 )   73              
  Comprehensive loss:                                                          
    Unrealized loss on investments                             6         6  
    Net loss                                 (14,821 )   (14,821 )
                                                     
 
  Comprehensive loss                                     (14,815 )
   
 
 
 
 
 
 
 
 
 
 
Balance at December 31, 2002   25,825,826     70,150   1,943,891     2     3     5,575     (288 )   6     (47,229 )   28,219  

F-5


 
  Preferred Stock
  Common Stock
   
   
   
   
   
   
 
 
  Common
Stock
Issuable

  Additional
Paid-in
Capital

  Deferred
Compensation

  Accumulated Other
Comprehensive
Income (Loss)

  Accumulated
Deficit

  Total
Stockholders'
Equity

 
 
  Shares
  Amount
  Shares
  Amount
 
Balance at December 31, 2002   25,825,826     70,150   1,943,891     2     3     5,575     (288 )   6     (47,229 )   28,219  
  Issuance of common stock related to license agreement         4,080         (3 )   3                  
  Issuance of common stock to employees related to the exercise of options         29,273             23                 23  
  Repurchase of common stock from employees         (23,826 )           (19 )               (19 )
  Compensation related to stock options granted to employees                     13,329     (13,329 )            
  Issuance of restricted stock to consultants for cash         67,318             49                 49  
  Compensation related to restricted stock issued to consultants                     1,253                 1,253  
  Amortization of deferred compensation                         5,037             5,037  
  Reduction of deferred compensation for unvested employee common stock shares repurchased                     (40 )   40              
  Comprehensive loss:                                                          
    Unrealized gain on investments                             (5 )       (5 )
    Net loss                                 (17,453 )   (17,453 )
                                                     
 
  Comprehensive loss                                     (17,458 )
   
 
 
 
 
 
 
 
 
 
 
Balance at December 31, 2003   25,825,826     70,150   2,020,736     2         20,173     (8,540 )   1     (64,682 )   17,104  
  Issuance of common stock to employees related to exercise of options (unaudited)         451,886             343                 343  
  Repurchase of common stock from consultants (unaudited)         (31,619 )           (24 )               (24 )
  Compensation related to stock options to employees (unaudited)                     426     (426 )            
  Compensation related to restricted stock issued to consultants (unaudited)                     577                 577  
  Issuance of common stock to consultants related to exercise of options (unaudited)         31,492             41                 41  
  Amortization of deferred compensation (unaudited)                         1,703             1,703  
  Comprehensive loss:                                                          
    Unrealized gain on investments (unaudited)                             (1 )       (1 )
    Net loss (unaudited)                                 (4,959 )   (4,959 )
                                                     
 
  Comprehensive loss                                     (4,960 )
   
 
 
 
 
 
 
 
 
 
 
Balance at March 31, 2004 (unaudited)   25,825,826   $ 70,150   2,472,495   $ 2   $   $ 21,536   $ (7,263 ) $   $ (69,641 ) $ 14,784  
   
 
 
 
 
 
 
 
 
 
 

See accompanying notes to financial statements.

F-6



Senomyx, Inc.

Statements of Cash Flows

(In thousands)

 
  Years Ended December 31,
  Three Months Ended
March 31,

 
 
  2001
  2002
  2003
  2003
  2004
 
 
   
   
   
  (Unaudited)

 
Operating activities                                
Net loss   $ (20,229 ) $ (14,821 ) $ (17,453 ) $ (3,296 ) $ (4,959 )
Adjustments to reconcile net loss to net cash used in operating activities:                                
  Depreciation and amortization     1,368     1,829     2,017     538     389  
  Common stock issued for license     4     3              
  Amortization of loan discount     2     5     8     1      
  Stock-based compensation for non-employees     209     63     1,253     162     577  
  Amortization of deferred compensation     1,409     635     5,037     116     1,703  
  Amortization of license fees     3,007     3,007     2,868     752      
  Change in operating assets and liabilities:                                
    Other assets     (402 )   77     (581 )   (380 )   (217 )
    Accounts payable, accrued expenses and other current liabilities     677     87     (435 )   (638 )   613  
    Deferred revenue     1,044     387     (1,151 )   1,028     (74 )
    Deferred rent             181     95     7  
   
 
 
 
 
 
Net cash used in operating activities     (12,911 )   (8,728 )   (8,256 )   (1,622 )   (1,961 )

Investing activities

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 
Purchases of property and equipment     (1,704 )   (2,370 )   (552 )   (178 )   (347 )
Purchases of investments     (27,770 )   (30,953 )   (9,715 )   (4,250 )    
Maturities of investments     35,047     25,177     11,927     4,276     1,792  
   
 
 
 
 
 
Net cash provided by (used in) investing activities     5,573     (8,146 )   1,660     (152 )   1,445  

Financing activities

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 
Proceeds from loans     1,250     1,580              
Repayment of loans     (157 )   (905 )   (1,768 )   (209 )    
Proceeds from issuance of preferred stock     23,595     13,003              
Proceeds from issuance of common stock     113     274     53     (4 )   360  
   
 
 
 
 
 
Net cash provided by (used in) financing activities     24,801     13,952     (1,715 )   (213 )   360  
   
 
 
 
 
 
Net increase (decrease) in cash and cash equivalents     17,463     (2,922 )   (8,311 )   (1,987 )   (156 )
Cash and cash equivalents at beginning of period     7,263     24,726     21,804     21,804     13,493  
   
 
 
 
 
 
Cash and cash equivalents at end of period   $ 24,726   $ 21,804   $ 13,493   $ 19,817   $ 13,337  
   
 
 
 
 
 

Supplemental disclosure of cash flow information:

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 
  Cash paid during the year for interest   $ 37   $ 147   $ 74   $ 34   $  
   
 
 
 
 
 

See accompanying notes to financial statements.

F-7



Senomyx, Inc.

Notes to Financial Statements

(Information as of March 31, 2004 and for the three

months ended March 31, 2003 and 2004 is unaudited)

1. Organization and Summary of Significant Accounting Policies

Organization and Business

        Senomyx, Inc. (the "Company") was incorporated on September 16, 1998 in Delaware and commenced operations in January 1999. The Company is a biotechnology company using proprietary taste receptor-based assay and screening technologies to discover and develop novel flavors and flavor enhancers for the packaged food and beverage industry. The Company has entered into product discovery and development collaborations with four of the world's leading packaged food and beverage companies: Campbell Soup Company ("Campbell Soup"), The Coca-Cola Company ("Coca-Cola"), Kraft Foods Global, Inc. ("Kraft Foods"), and Nestlé SA ("Nestlé"). The Company's collaboration agreements provide for research funding, milestone payments if the Company achieves development goals and royalties on future sales of consumer products incorporating our flavors and flavor enhancers. The Company currently has flavor programs focused on the development of savory, sweet and salt flavors or flavor enhancers.

Use of Estimates

        The preparation of financial statements in conformity with accounting principles generally accepted in the United States requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. Actual results could differ from those estimates.

Pro Forma Stockholders' Equity

        If an initial public offering contemplated by the prospectus is consummated under the terms presently anticipated, all shares of convertible preferred stock outstanding at December 31, 2003 will automatically convert into 16,205,306 shares of common stock. The unaudited pro forma stockholders' equity at March 31, 2004 reflects the effect of the preferred stock conversion.

Interim Financial Information

        The financial statements as of and for the three months ended March 31, 2003 and 2004 are unaudited. The unaudited financial statements have been prepared on the same basis as the audited financial statements and, in the opinion of management, include all adjustments, consisting only of normal recurring adjustments, necessary to state fairly the financial information therein. The results of operations for the three months ended March 31, 2004 are not necessarily indicative of the results that may be reported for the year ended December 31, 2004.

Cash and Cash Equivalents

        The Company considers all highly liquid investments with a remaining maturity of less than three months when purchased to be cash equivalents. Cash equivalents are recorded at cost, which approximates market value.

F-8



Investments Available-for-Sale

        The Company's surplus cash is invested in government agency bonds and United States Treasury securities with maturity dates of less than one year. The amortized cost of debt securities is adjusted for amortization of premiums and accretion of discounts to maturity with all amortization/accretion included in interest income. The Company's short-term investments are classified as available-for-sale and carried at estimated fair value, as determined by quoted market prices, with unrealized gains and losses reported in a separate component of accumulated other comprehensive income. Realized gains and losses and declines in value judged to be other-than-temporary, if any, on available-for-sale securities are included in investment income. The cost of securities sold is based on the specific identification method. Interest on securities classified as available-for-sale is included in interest income.

Fair Value of Financial Instruments

        The carrying amount of cash and cash equivalents, investments available-for-sale, accounts payable and accrued expenses are considered to be representative of their respective fair value because of the short-term nature of those items.

Concentration of Credit Risk and Major Collaborations

        Financial instruments, which potentially subject the Company to concentrations of credit risk, consist of cash, cash equivalents and investments available-for-sale. The Company limits its exposure to credit loss by placing its cash, cash equivalents, and investments with high credit quality financial institutions in instruments with short maturities.

        The Company derives its revenues from a relatively small number of collaborators. For the year ended December 31, 2001, revenues from two collaborators accounted for 60% and 40%, respectively, of total revenues. For the year ended December 31, 2002, revenues from four collaborators accounted for 31%, 23%, 27% and 19%, respectively, of total revenues. For the year ended December 31, 2003, revenues from four collaborators accounted for 22%, 28%, 28% and 22%, respectively, of total revenues. For the three months ended March 31, 2004 and 2003 revenues from four collaborators accounted for 36%, 22%, 16% and 26% and 26%, 23%, 25% and 26%, respectively, of total revenues.

Property and Equipment

        Property and equipment are stated at cost less accumulated depreciation and are depreciated over the estimated useful lives of the assets (ranging from three to five years) using the straight-line method. Leasehold improvements are amortized over the estimated useful life of the asset or the lease term, whichever is shorter.

Patent Costs

        Costs related to filing and pursuing patent applications are expensed as incurred, as recoverability of such expenditures is uncertain.

F-9



Intangible Assets

        The Company amortizes intangible assets over their estimated useful lives. To date, the intangible assets have consisted of certain technology and databases acquired from Aurora Biosciences Corporation ("Aurora") and Incyte Genomics, Inc. ("Incyte") which were amortized to research and development expense over three years. As of December 31, 2003, the intangible assets are fully amortized.

Impairment of Long-Lived Assets

        In accordance with Statement of Financial Accounting Standards ("SFAS") No. 144, Accounting for the Impairment or Disposal of Long-Lived Assets , if indicators of impairment exist, the Company assesses the recoverability of the affected long-lived assets by determining whether the carrying value of such assets can be recovered through undiscounted future operating cash flows. If impairment is indicated, the Company measures the amount of such impairment by comparing the fair value to the carrying value. There have been no indicators of impairment through March 31, 2004.

Revenue Recognition

        The Company's revenue recognition policies are in compliance with the Staff Accounting Bulletin ("SAB") No. 101, Revenue Recognition in Financial Statements and Emerging Issues Task Force ("EITF") Issue 00-21, Revenue Arrangements with Multiple Deliverables . Revenue is deferred for fees received before earned. Some of the Company's agreements contain multiple elements, including research funding, milestones and royalties.

        Revenue from milestones is recognized when earned, as evidenced by written acknowledgment from the collaborator or other persuasive evidence that the milestone has been achieved, provided that (i) the milestone event is substantive and its achievability was not reasonably assured at the inception of the agreement, and (ii) the Company's performance obligations after the milestone achievement will continue to be funded by the collaborator at a level comparable to before the milestone achievement. If both of these criteria are not met, the milestone payment is recognized over the remaining minimum period of the Company's performance obligations under the agreement. Non-refundable upfront fees, if any, not associated with future Company performance, will be recognized when received. Amounts received for research funding are recognized as revenues as the services are performed. Royalties to be received based on product sales made by our collaborators incorporating our product, if any, will be recognized as earned. To date, the Company has not earned any royalties.

Research and Development

        Research and development costs, including those incurred in relation to the Company's collaborative agreements, are expensed in the period incurred. Research and development costs primarily consist of salaries and related expenses for personnel, facilities and depreciation, research and development supplies, patents and licenses and outside services. The Company has licensed certain technology and databases used in its collaborative agreements, which have been capitalized in

F-10



accordance with SFAS No. 2, Accounting for Research and Development Costs , and amortized to research and development expense over their estimated useful lives.

Comprehensive Income (Loss)

        SFAS No. 130, Reporting Comprehensive Income , requires that all components of comprehensive income, including net income, be reported in the financial statements in the period in which they are recognized. Comprehensive income (loss) is defined as the change in equity during a period from transactions and other events and circumstances from non-owner sources. The Company's accumulated other comprehensive income (loss), as of December 31, 2002 and 2003 and March 31, 2004, consisted of unrealized gains and losses on investments available-for-sale and is reported in stockholders' equity.

Deferred Rent

        Rent expense is recorded on a straight-line basis over the term of the lease. The difference between rent expense accrued and amounts paid under the lease agreement is recorded as deferred rent in the accompanying balance sheets.

Stock-Based Compensation

        As permitted by SFAS No. 123, Accounting for Stock-Based Compensation , the Company has elected to follow Accounting Principles Board Opinion No. 25, Accounting for Stock Issued to Employees ("APB 25"), and related interpretations in accounting for its employee stock options. Under APB 25, when the purchase price of restricted stock or the exercise price of the Company's employee stock options equals or exceeds the fair value of the underlying stock on the date of issuance or grant, no compensation expense is recognized. In conjunction with the Company's initial public offering contemplated by the prospectus, the Company reviewed its historical exercise prices through March 31, 2004 and, as a result, revised the estimate of fair value for all stock options granted subsequent to January 1, 2003. With respect to these options granted, the Company has recorded deferred stock compensation of $13.3 million during the year ended December 31, 2003 and $426,000 during the three months ended March 31, 2004 for the difference between the original exercise price per share determined by the Board of Directors and the revised estimate of fair value per share at the respective grant dates. The weighted average exercise price for the 876,261 options granted to the Company's employees subsequent to January 1, 2003 was $0.74 with a weighted average revised fair value per share of $16.43. Deferred stock compensation is recognized and amortized on an accelerated basis in accordance with Financial Accounting Standards Board Interpretation ("FIN") No. 28, Accounting for Stock Appreciation Rights and Other Variable Stock Option or Award Plans , over the vesting period of the related options, generally four years.

        Options or stock awards issued to non-employees are recorded at their fair value in accordance with SFAS No. 123, Accounting for Stock-Based Compensation , and EITF No. 96-18, Accounting for Equity Instruments That Are Issued to Other Than Employees for Acquiring or in Conjunction with Selling Goods or Services , and are periodically revalued as the options vest and are recognized as expense over the related service period. The Company granted stock options and stock awards to non-employees as

F-11



follows: 56,096, 134,636, 97,508 and 20,399 for the years ended December 31, 2001, 2002, 2003 and the three months ended March 31, 2004, respectively. Compensation expense related to non-employee stock option grants and stock awards was $209,000, $63,000, $1.3 million, $162,000 and $577,000 for the years ended December 31, 2001, 2002, 2003 and the three months ended March 31, 2003 and 2004, respectively. The options were valued using the Black-Scholes option pricing model with the following weighted-average assumptions for the years ended December 31, 2001, 2002, 2003 and the three months ended March 31, 2003 and 2004: (a) risk free interest rates of 4.0%, 3.0%, 3.0%, 3.0% and 3.0%, respectively; (b) dividend yield of 0%, (c) expected volatility of 70%; and (d) expected life of five years for all periods.

        As required under SFAS No. 123, the pro forma effects of employee stock-based compensation on net loss are estimated at the date of grant using the Black-Scholes option-pricing model. The Black-Scholes option valuation model was developed for use in estimating the fair value of traded options that have no vesting restrictions and are fully transferable. Because the Company's employee stock options have characteristics significantly different from those of traded options, and because changes in the subjective input assumptions can materially affect the fair value estimate, in management's opinion, the existing models do not necessarily provide a reliable single measure of the fair value of its employee stock options.

        The fair value of options issued to employees was estimated at the date of grant using the Black-Scholes option valuation model with the following weighted average assumptions for the years ended December 31, 2001, 2002, 2003 and the three months ended March 31, 2003 and 2004: (a) risk-free interest rate of 4.0%, 3.0%, 3.0%, 3.0% and 3.0%, respectively; (b) expected dividend yield of 0%; (c) volatility factor of 70%; and (d) five-year estimated life of the options. The estimated weighted average fair value of stock options granted during 2001, 2002, 2003 and the three months ended March 31, 2003 and 2004 was $1.50, $0.45, $15.74, $12.38 and $20.42, respectively.

        For purposes of pro forma disclosures, the estimated fair value of the options is amortized to expense over the vesting period of the related options. The Company's pro forma information follows (in thousands, except per share data):

 
  Years ended December 31,
  Three months ended March 31,
 
 
  2001
  2002
  2003
  2003
  2004
 
Net loss as reported   $ (20,229 ) $ (14,821 ) $ (17,453 ) $ (3,296 ) $ (4,959 )
Add: Stock-based employee compensation expense included in net loss     1,409     635     5,037     116     1,703  
Deduct: Stock-based employee compensation expense determined under fair value method     (342 )   (436 )   (5,120 )   (116 )   (1,731 )
   
 
 
 
 
 
Pro forma net loss   $ (19,162 ) $ (14,622 ) $ (17,536 ) $ (3,296 ) $ (4,987 )
   
 
 
 
 
 
Basic and diluted net loss per share as reported   $ (17.30 ) $ (9.60 ) $ (10.03 ) $ (1.97 ) $ (2.63 )
   
 
 
 
 
 
Pro forma basic and diluted net loss per share   $ (16.39 ) $ (9.47 ) $ (10.08 ) $ (1.97 ) $ (2.64 )
   
 
 
 
 
 

F-12


Net Loss Per Share

        The Company calculated net loss per share in accordance with SFAS No. 128, Earnings Per Share , and SAB No. 98. Basic earnings per share ("EPS") is calculated by dividing the net income or loss by the weighted average number of common shares outstanding for the period, without consideration for common stock equivalents. Diluted EPS is computed by dividing the net income or loss by the weighted average number of common share equivalents outstanding for the period determined using the treasury-stock method. For purposes of this calculation, common stock subject to repurchase by the Company, convertible preferred stock, options, and warrants are considered to be common stock equivalents and are only included in the calculation of diluted earnings per share when their effect is dilutive. Under the provisions of SAB No. 98, common shares issued for nominal consideration (as defined), if any, would be included in the per share calculations as if they were outstanding for all periods presented. No common shares have been issued for nominal consideration.

        The following table sets forth the computation of basic and diluted, and unaudited pro forma basic and diluted, net loss per share for the respective periods. The unaudited pro forma basic and diluted net loss per share represent the weighted average common shares outstanding reduced by the weighted average unvested common shares subject to repurchase, and gives the effect to the conversion of the convertible preferred stock into shares of common stock as if converted at the date of original issuance.

 
  Year ended December 31,
  Three Months Ended March 31,
 
 
  2001
  2002
  2003
  2003
  2004
 
Historical:                                
Net loss   $ (20,229 ) $ (14,821 ) $ (17,453 ) $ (3,296 ) $ (4,959 )
   
 
 
 
 
 
Denominator:                                
  Weighted average common shares     1,780,053     1,890,369     1,975,074     1,943,927     2,089,150  
  Weighted average unvested common shares subject to repurchase     (610,919 )   (346,101 )   (235,694 )   (271,616 )   (201,476 )
   
 
 
 
 
 
  Denominator for basic and diluted earnings per share     1,169,134     1,544,268     1,739,380     1,672,311     1,887,674  
   
 
 
 
 
 
Basic and diluted net loss per share   $ (17.30 ) $ (9.60 ) $ (10.03 ) $ (1.97 ) $ (2.63 )
   
 
 
 
 
 
Pro forma:                                
Pro forma net loss               $ (17,453 )       $ (4,959 )
               
       
 
Pro forma basic and diluted net loss per share               $ (0.97 )       $ (0.27 )
               
       
 
Shares used above                 1,739,380           1,887,674  
Pro forma adjustment to reflect assumed weighted average effect of conversion of preferred stock                 16,205,306           16,205,306  
               
       
 
Pro forma shares used to compute basic and diluted net loss per share                 17,944,686           18,092,980  
               
       
 

F-13


 
  Year ended December 31,
  Three Months ended March 31,
 
  2001
  2002
  2003
  2003
  2004
Historical outstanding antidilutive securities not included in diluted net loss per share calculation                    
Preferred stock*   12,466,034   16,205,306   16,205,306   16,205,306   16,205,306
Common stock subject to repurchase   396,446   297,123   211,862   250,683   444,377
Options to purchase common stock   633,361   631,678   1,404,598   602,281   957,008
Warrants   10,199   10,199   10,199   10,199   10,199
   
 
 
 
 
    13,506,040   17,144,306   17,831,965   17,068,469   17,616,890
   
 
 
 
 

*
Represents the number of shares of common stock into which preferred stock was convertible.

Effect of New Accounting Standards

        In November 2002, the FASB Emerging Issues Task Force issued its consensus concerning Revenue Arrangements with Multiple Deliverables ("EITF 00-21"). EITF 00-21 addresses how to determine whether a revenue arrangement involving multiple deliverables should be divided into separate units of accounting, and, if separation is appropriate, how the arrangement consideration should be measured and allocated to the identified accounting units. EITF 00-21 is effective for revenue arrangements entered into in fiscal periods beginning after June 15, 2003. The adoption of EITF 00-21 did not have a material impact on our financial statements.

        In December 2002, the FASB issued SFAS No. 148, Accounting for Stock-Based Compensation—Transition and Disclosure . SFAS No. 148 is an amendment to SFAS No. 123 providing alternative methods of transition for a voluntary change to the fair value based method of accounting for stock-based employee compensation and also provides additional disclosures about the method of accounting for stock-based employee compensation. SFAS No. 148 is effective for financial statements for the Company beginning January 1, 2003. The Company has currently chosen not to adopt the voluntary change to the fair value based method of accounting for stock-based employee compensation. If the Company should choose to adopt such a method, its implementation pursuant to SFAS No. 148 could have a material effect on the Company's financial position and results of operations.

F-14



2. Balance Sheet Details

Investments Available-for-Sale

        The following is a summary of investments available-for-sale securities at December 31, 2002 (in thousands):

 
  Amortized Cost
  Unrealized Gain
  Unrealized Loss
  Estimated
Fair Value

Government Agency Bonds   $ 2,693   $ 3   $   $ 2,696
United States Treasury Securities     2,986     3         2,989
Certificate of Deposit     97             97
   
 
 
 
    $ 5,776   $ 6   $   $ 5,782
   
 
 
 

        The following is a summary of investments available-for-sale securities at December 31, 2003
(in thousands):

 
  Amortized Cost
  Unrealized Gain
  Unrealized Loss
  Estimated
Fair Value

Government Agency Bonds   $ 2,792   $ 1   $   $ 2,793
United States Treasury Securities     772             772
   
 
 
 
    $ 3,564   $ 1   $   $ 3,565
   
 
 
 

        The following is a summary of investments available-for-sale securities at March 31, 2004
(in thousands): (unaudited)

 
  Amortized Cost
  Unrealized Gain
  Unrealized Loss
  Estimated
Fair Value

Government Agency Bonds   $ 999   $   $   $ 999
United States Treasury Securities     774             774
   
 
 
 
    $ 1,773   $   $   $ 1,773
   
 
 
 

        Gross realized gains and losses on available-for-sale securities were immaterial during the years ended December 31, 2002 and 2003 and the three months ended March 31, 2003 and 2004. All of the available-for-sale securities have a contractual maturity at March 31, 2004 of one year or less.

F-15



Property and Equipment

        Property and equipment consists of the following (in thousands):

 
  December 31,
   
 
 
  March 31, 2004
 
 
  2002
  2003
 
Scientific equipment   $ 4,968   $ 5,158   $ 5,186  
Computer equipment     1,516     1,711     1,869  
Furniture and fixtures     213     223     233  
Leasehold improvements     439     587     738  
   
 
 
 
      7,136     7,679     8,026  
Less accumulated depreciation and amortization     (3,546 )   (5,554 )   (5,943 )
   
 
 
 
    $ 3,590   $ 2,125   $ 2,083  
   
 
 
 

        Depreciation and amortization expense was $1.4 million, $1.8 million, $2.0 million, $538,000 and $389,000 for the years ended December 31, 2001, 2002 and 2003 and for the three months ended March 31, 2003 and 2004, respectively.

Accounts Payable and Accrued Expenses

        Accounts payable and accrued expenses consists of the following (in thousands):

 
  December 31,
   
 
  March 31, 2004
 
  2002
  2003
Accounts payable   $ 765   $ 372   $ 981
Accrued empoyee benefits     1,034     906     611
Other accrued liabilities     322     401     691
   
 
 
    $ 2,121   $ 1,679   $ 2,283
   
 
 

3. Product Discovery and Development Collaborations

        Campbell Soup Company.     In March 2001, the Company entered into a collaboration agreement with Campbell Soup to work for a three-year collaborative period for the discovery and development of specified flavors and flavor enhancers. The agreement requires Campbell Soup to make research funding payments over three years totaling $3.6 million. The Company is also eligible to receive milestone payments upon the achievement of a specific product development goal and, in the event of commercialization, receive royalties on future net sales of collaborator products containing a discovered ingredient.

        The agreement was amended in July 2002 to provide for an option to negotiate the right to expand the field to include additional specified products. The Company received $1.8 million from Campbell

F-16



Soup for the option, which was recorded as deferred revenue and recognized as revenue ratably over the remaining term of the agreement (20 months). The agreement was further amended in November 2002 to redefine earned royalties during the royalty term.

        In July 2003, the Company received $650,000 in additional research support funding and expense reimbursement. The payment was recorded as deferred revenue and is being recognized as revenue ratably over the remaining term of the agreement (eight months).

        The agreement was further amended in March 2004 to extend the collaborative period until the earlier of March 2006 or when a flavor or flavor enhancer selected by Campbell's receives Generally Recognized as Safe determination, subject to earlier termination under specified circumstances. Under the terms of the extension, the Company will provide additional research and receive additional research funding totaling $3.0 million for two additional years.

        To date, the Company has received $6.7 million in research and development funding. If all milestones are achieved, and including all research and development funding paid or payable, the Company may be entitled to payments which total up to $10.1 million. There is no guarantee that the Company will receive any milestone payments or royalties under this collaboration.

        The Coca-Cola Company.     In April 2002, the Company entered into a collaboration agreement with Coca-Cola for the discovery and development of specified flavors and flavor enhancers. The agreement requires Coca-Cola to make research funding payments over three years totaling $6.0 million. The Company is also eligible to receive milestone payments upon the achievement of specific product development goals and, in the event of commercialization, receive royalties on future sales of collaborator products containing a discovered ingredient.

        The agreement was amended in April 2004 to extend the collaborative period until April 2008, subject to earlier termination under specified circumstances. Under terms of the extension, the Company will provide additional research and receive additional research funding totaling $6.0 million for three additional years.

        To date, the Company has received $4.0 million in research and development funding. If all milestones are achieved, and including all research and development funding paid or payable, the Company may be entitled to payments which total up to $14.8 million. There is no guarantee that the Company will receive any milestone payments or royalties under this collaboration.

        Kraft Foods Global, Inc.     In December 2000, the Company entered into a collaboration agreement with Kraft Foods for the discovery and development of flavor enhancers. Under the terms of the collaboration, Kraft Foods agreed to pay research funding of approximately $1.4 million per year for three years. In May 2002, the agreement was amended to provide for an additional collaborative program. The level of research support under the original program was reduced from $1.4 million to $1.1 million per year for the remainder of the research term. The Company is eligible to receive milestone payments upon the achievement of specific product development goals and, in the event of commercialization, receive royalties on future net sales of collaborator products containing a discovered ingredient.

F-17



        Kraft Foods agreed to make research funding payments related to the additional program of $1.8 million over the period from May 2002 through December 2003 and $1.8 million over the period from January 2004 through May 2005. The research effort approximates the funding levels. The Company is also eligible to receive milestone payments upon the achievement of specific product development goals and receive royalties on net sales of collaborator products containing a discovered ingredient related to this additional program. The Company earned a milestone in 2002 from the additional research program.

        To date, the Company has received $6.4 million in research and development funding and one milestone payment of $375,000. If all milestones are achieved, and including all research and development funding paid or payable, the Company may be entitled to payments which total up to $8.6 million. There is no guarantee that the Company will receive any further milestone payments or royalties under this collaboration.

        Nestlé.     In April 2002, the Company entered into a collaboration agreement with Nestlé for the discovery and development of specified flavors and flavor enhancers. The agreement requires Nestlé to make research funding payments over three years totaling $7.0 million. The Company is also eligible to receive milestone payments upon the achievement of specific product development goals and, in the event of commercialization, receive royalties on future net sales of collaborator products containing a discovered ingredient. In 2002 and 2003, the Company received payments for the achievement of two milestones.

        To date, the Company has received $5.2 million in research and development funding and three milestone payments of $375,000 each. If all milestones are achieved, and including all research and development funding paid or payable, the Company may be entitled to payments which total up to $9.6 million. There is no guarantee that the Company will receive any further milestone payments or royalties under this collaboration.

        In connection with the above listed collaboration agreements, the Company has recognized revenue of $2.3 million, $7.3 million and $9.5 million for the years ended December 31, 2001, 2002 and 2003, respectively, and $2.2 million and $2.2 million for the three months ended March 31, 2003 and 2004, respectively. As of December 31, 2002 and 2003 and as of March 31, 2004, the Company has deferred revenue of $2.6 million, $1.4 million and $1.3 million, respectively.

4. Technology Collaborations and License Agreements

        Aurora Biosciences Corporation.     In November 2000, the Company entered into a technology collaboration and license agreement with Aurora to develop certain assay technologies, which was amended in April 2002. Under the collaboration, Aurora employed its proprietary technologies to develop high-throughput screening assays for the Company. The agreement terminated in October 2002 and Invitrogen Corporation subsequently acquired certain surviving rights and obligations under this agreement. Under the surviving terms of the agreement, the Company maintains exclusive rights to use certain proprietary screening technologies with its taste receptor targets for the discovery of flavors and flavor enhancers. These exclusive rights are subject to rights granted under other current and future license agreements in connection with the purchase of certain screening systems, as well as Invitrogen's

F-18


right to grant licenses under its proprietary technology to academic, government and other non-profit organizations. The Company paid a licensing fee of $2.5 million that was capitalized and amortized to research and development expense over the estimated useful life of three years. As of December 31, 2003, the license was fully amortized. The Company made cash research funding payments to Aurora totaling $4.7 million for development services provided from November 2000 through October 2002 and a $100,000 milestone payment following the delivery of specified assays for the discovery of flavor and fragrance molecules. All of these amounts were expensed when and as incurred in each accounting period. In addition, in November 2000, Aurora purchased 1,000,000 shares of the Company's Series C Convertible Preferred Stock for $4.8 million in cash. The Company recognized expense related to research funding and amortization of the license fee of $3.2 million, $2.8 million, $694,000, $208,000 and $0 for the years ended December 31, 2001, 2002 and 2003 and for the three months ended March 31, 2003 and 2004, respectively.

        Incyte Genomics, Inc.     In December 2000, the Company entered into a three-year agreement with Incyte that provided the Company with access to Incyte's databases for the identification of receptors that play a role in taste and smell in order to accelerate the Company's discovery of flavor and fragrance molecules. Under the terms of the agreement, the Company was required to pay $6.5 million for the databases. Concurrent with the signing of the agreement, Inctye agreed to purchase 869,328 shares of the Company's Series D Convertible Preferred Stock for $6.5 million. Since the amounts exchanged were equal, the Company accounted for the transaction as a non-monetary exchange in 2000. The Company capitalized the cost of the database and amortized the cost to research and development expense over the three-year term of the agreement. The value ascribed to the databases of $6.5 million was based on the fair value of the preferred stock issued. The Company recorded $2.2 million of amortization expense for each of the years ended December 31, 2001, 2002 and 2003, and $543,000 and $0 for the three months ended March 31, 2003 and 2004, respectively.

        The Company also has other license and research agreements, of which the Company recognized expenses of $502,000, $442,000, $934,000, $145,000 and $390,000 for the years ended December 31, 2001, 2002, 2003 and for the three months ended March 31, 2003 and 2004, respectively. The fees were charged to research and development expense.

5. Commitments

Leases and Loans

        The Company leases its primary office facility under an operating lease agreement that expires on December 31, 2006, subject to a five-year extension option by the Company. The lease provides for an annual minimum 3% rent increase. The Company has also entered into various operating lease agreements for office equipment. Gross rent expense for the years ended December 31, 2001, 2002 and 2003 was $2.4 million, $2.9 million, and $3.9 million, respectively and for the three months ended March 31, 2003 and 2004 was $864,000 and $969,000, respectively. The Company subleases part of the facility, and the sublease rental income for the years ended December 31, 2001, 2002 and 2003 was $827,000, $1.4 million and $1.4 million, respectively and for the three months ended March 31, 2003 and 2004 was $348,000 and $328,000, respectively. Sublease income is recorded as an offset to the Company's allocated facilities costs.

F-19


        At December 31, 2003, estimated annual future minimum rental payments under the Company's operating leases for the years ending December 31 are as follows (in thousands):

 
  Operating
Leases

2004   $ 3,993
2005     4,111
2006     4,226
2007     1
   
Total minimum lease payments   $ 12,331
   

        Future minimum rentals to be received under non-cancelable subleases, which expire through 2005, total $711,000 and $182,000 for the years ended December 31, 2004 and 2005, respectively.

        In July 2001, the Company entered into a loan and security agreement with Silicon Valley Bank for loan disbursements up to $3.0 million on capital equipment purchases. From 2001 through 2003, the Company received advances totaling $2.6 million on the Silicon Valley Bank loan for capital equipment purchases. The advances accrued at 7.0% to 9.0%. In July 2003, the Company paid off the remaining principal portion of the equipment loans from Silicon Valley Bank in the amount of $1.3 million. In connection with the equipment loan, warrants to purchase up to 10,199 shares of common stock at $2.45 per share were issued to and are exercisable by Silicon Valley Bank. The estimated fair market value of the warrants of $16,000 was recorded as a discount on the equipment loan and was amortized to interest expense over the term of the equipment loan. The fair value was determined using the Black-Scholes Valuation Model.

        In connection with certain license and collaboration agreements, the Company's annual future minimum obligation payments are as follows, $113,000, $113,000, $56,000 $56,000 $18,000 for the years ending December 31, 2004, 2005, 2006, 2007 and 2008, respectively.

F-20



6. Stockholders' Equity

Convertible Preferred Stock

        The authorized Convertible Preferred Stock by series at March 31, 2004 are as follows:

 
  Shares Authorized
  Shares Issued and Outstanding
  Issued and
Outstanding Shares of the
Aggregate Liquidation
Preferences

  Shares As If
Converted

Series A   8,648,158   8,648,158   $ 12,293,357   3,528,339
Series A-1   8,648,158        
Series B   2,605,326   2,605,326     10,029,724   1,185,497
Series B-1   2,605,326        
Series C   1,000,000   1,000,000     4,800,000   489,121
Series D   869,328   869,328     6,519,960   477,365
Series E   12,703,015   12,703,014     46,046,838   10,524,984
   
 
 
 
    37,079,311   25,825,826   $ 79,689,879   16,205,306
   
 
 
 

        The holders of all classes of Convertible Preferred Stock are entitled to receive annual cumulative dividends of 8% of the original issue price per share, when and if declared by the Board of Directors, prior and in preference to common stockholders. As of March 31, 2004, no dividends have been declared.

Conversion Features

        At the option of the holder, shares of Series A, B, C, D and E Convertible Preferred Stock are convertible into shares of common stock at stated rates, subject to adjustment for dilution. Shares of Series A, B, C and D Convertible Preferred Stock will automatically convert into shares of common stock upon the earlier of the closing of a qualified public offering of common stock under the Securities Act of 1933, as amended, in which the Company receives at least $15.0 million in gross proceeds at a price of at least $4.26 per share, or on the date specified by written consent or agreement of the holders of 66.7% of the then outstanding shares of Convertible Preferred Stock. Shares of Series E Convertible Preferred Stock will automatically convert into shares of common stock upon the earlier of the closing of a qualified public offering of common stock under the Securities Act of 1933, as amended, in which the Company receives at least $25.0 million in gross proceeds at a price of at least $8.70 per share, or on the date specified by written consent or agreement of the holders of 66.7% of the then outstanding shares of Convertible Preferred Stock.

Liquidation Preferences

        In the event of liquidation of the Company, holders of Series A, B, C, D and E Convertible Preferred Stock are entitled to a liquidation preference of $1.42, $3.85, $4.80, $7.50 and $3.62 per share, respectively, plus any declared and unpaid dividends on such shares. If, upon the occurrence of such event, the assets and funds of the Company shall be insufficient to make payment in full to all

F-21



holders of Convertible Preferred Stock, then such assets and funds shall be distributed to the holders of Convertible Preferred Stock ratably in proportion to the full amounts to which they would otherwise be entitled.

Voting

        The preferred stockholders of each share of Series A, B, C, D and E Convertible Preferred Stock shall have voting rights equal to the number of common shares they would own upon conversion.

Common Stock

        All of the outstanding shares of common stock have been issued to the founders, directors and employees of, and consultants to, the Company. In connection with certain stock purchase agreements, the Company has the option to repurchase, at the original issuance price, the unvested shares in the event of termination of employment or engagement. Shares under these agreements vest over periods up to four years. At March 31, 2004, 188,772 shares have been repurchased and 444,377 shares are subject to repurchase by the Company.

Warrants

        In 2001, in connection with equipment financing (see Note 5), the Company issued to Silicon Valley Bank warrants to purchase 10,199 shares of common stock at a price of $2.45 per share. The warrants expire five years from the closing of the sale and issuance of the Company's common stock in an initial public offering. All warrants were outstanding at March 31, 2004.

Equity Incentive Plan

        During 1999, the Company adopted the 1999 Equity Incentive Plan (the "Plan"), which provides for the grant of incentive and non-statutory stock options and restricted stock purchase rights to employees, directors and consultants of the Company. The Plan, as amended, authorizes the Company to issue up to 2,525,405 shares of common stock. At March 31, 2004, 450,556 shares remain available for grant under the Plan.

        The Plan allows the Company to grant restricted stock purchase rights at no less than 85% of the fair value of the Company's common stock as determined by the Board of Directors at the date of the grant. All restricted stock purchase rights vest in accordance with a vesting schedule determined by the Board of Directors, typically over a four-year period. The Company has an option to repurchase all unvested shares, at the original purchase price, upon the voluntary or involuntary termination of employment with, or consulting services provided to, the Company for any reason.

        Under the Plan, 457,069 restricted stock purchase rights have been granted at exercise prices ranging from $0.35 to $0.94 per share, all of which have been exercised as of March 31, 2004, of which 10,904 unvested shares are subject to repurchase. At March 31, 2004, the Company has repurchased a total of 121,103 shares under the Plan.

F-22



        Options granted under the Plan generally expire no later than ten years from the date of grant (five years for a 10% stockholder). Options generally vest and become fully exercisable over a period of five years, except for officers, directors and consultants that may be made fully exercisable. The exercise price of incentive stock options must be equal to at least the fair value of the Company's common stock on the date of grant, and the exercise price of non-statutory stock options may be no less than 85% of the fair value of the Company's common stock on the date of grant. The exercise price of any option granted to a 10% stockholder may be no less than 110% of the fair value of the Company's common stock on the date of grant.

        The following is a further breakdown of the options outstanding as of March 31, 2004:

 
   
  Options Outstanding
  Options Vested
and Exercisable

 
   
  Weighted
Average
Remaining
Contractual
Life

   
Range of Exercise
Prices

  Number of
Options

  Weighted
Average
Exercise
Price

  Number of
Options

  Weighted
Average
Exercise
Price

$ 0.35   13,257   6.3   $ 0.35   11,219   $ 0.35
$ 0.74   655,762   9.2   $ 0.74   16,202   $ 0.74
$ 0.94   58,122   6.5   $ 0.94   47,769   $ 0.94
$ 1.83   31,517   6.7   $ 1.83   24,290   $ 1.83
$ 2.45   198,350   7.0   $ 2.45   163,625   $ 2.45
     
           
     
      957,008   8.5         263,105      
     
           
     

F-23


        The following is a summary of stock option and stock award activity under the equity incentive plan through March 31, 2004:

 
  Number of
Shares

  Weighted Average
Exercise Price

Outstanding at December 31, 2000   134,350   $ 1.08
  Granted   564,198   $ 2.41
  Exercised   (50,999 ) $ 2.32
  Cancelled   (14,312 ) $ 2.35
   
     
Outstanding at December 31, 2001   633,237   $ 2.13
  Granted   394,364   $ 0.74
  Exercised   (218,225 ) $ 1.33
  Cancelled   (177,822 ) $ 2.25
   
     
Outstanding at December 31, 2002   631,554   $ 1.50
  Granted   888,702   $ 0.74
  Exercised   (29,273 ) $ 0.78
  Cancelled   (86,509 ) $ 1.50
   
     
Outstanding at December 31, 2003   1,404,474   $ 1.04
  Granted   38,147   $ 0.74
  Exercised   (483,378 ) $ 0.78
  Cancelled   (2,235 ) $ 1.92
   
     
Outstanding at March 31, 2004   957,008   $ 1.13
   
     

        The following shares of common stock are reserved for future issuance:

 
  March 31, 2004
Conversion of preferred stock   16,205,306
Common stock options granted and outstanding   957,008
Common stock options reserved for future grant   450,556
Warrants to purchase common stock   10,199
   
Total common stock shares reserved for future issuance   17,623,069
   

7. Income Taxes

        Significant components of the Company's net deferred tax assets at December 31, 2002 and 2003 are shown below (in thousands). A valuation allowance of $18.7 million and $23.4 million has been

F-24



established to offset the net deferred tax assets as of December 31, 2002 and 2003, respectively, as realization of such assets is uncertain.

 
  Years ended
December 31,

 
 
  2002
  2003
 
Deferred tax assets:              
  Net operating loss carryforwards   $ 14,075   $ 18,230  
  Research and development credits     1,804     1,995  
  Capitalized research and development     1,542     2,210  
  Deferred revenue     1,045     577  
  Other, net     228     339  
   
 
 
Total deferred tax assets     18,694     23,351  
   
 
 
Total deferred tax liabilities          
   
 
 
Net deferred tax assets              
Valuation allowance for deferred tax assets     (18,694 )   (23,351 )
   
 
 
  Net deferred tax assets   $   $  
   
 
 

        At December 31, 2003, the Company had federal and California tax net operating loss carryforwards of approximately $50.2 million and $11.7 million, respectively. The federal and California tax loss carryforwards will begin to expire in 2019 and 2009, respectively, unless previously utilized. The Company also had federal and California research and development tax credit carryforwards of approximately $1.3 million and $1.0 million, respectively, which will begin to expire in 2019 unless previously utilized.

        Pursuant to Internal Revenue Code Section 382 and 383, use of the Company's net operating loss and credit carryforwards may be limited if a cumulative change in ownership of more than 50% occurs within a three-year period.

8. Subsequent Events

Changes in Capitalization

        On April 30, 2004 our board of directors approved the following:

    A 4-for-7 reverse stock split of the outstanding common stock, which was effected on June 7, 2004. The accompanying financial statements give retroactive effect to the reverse stock split for all periods presented.

    Upon the effectiveness of the initial public offering contemplated by this prospectus, the filing of an amended and restated certificate of incorporation to provide for authorized capital stock of 120,000,000 shares of common stock and 7,500,000 shares of undesignated preferred stock;

    Upon the effectiveness of the initial public offering contemplated by this prospectus, the reservation of a total of 4,965,000 shares of common stock for the amended and restated 2004 equity incentive plan; and

F-25


    Upon the effectiveness of the initial public offering contemplated by this prospectus, the reservation of a total of 140,000 shares of common stock for the 2004 employee stock purchase plan.

        On June 15, 2004 our board of directors approved the following:

    A 1-for-1.4005989 reverse stock split of the outstanding common stock, which was effected on June 16, 2004, and

    An amendment to the terms of the Series E preferred stock such that each share of Series E preferred stock will convert into 0.828543 shares of common stock upon the closing of the offering contemplated by this prospectus.

        The accompanying financial statements give retroactive effect to the reverse stock split and reflect the change to the Series E conversion rate for all periods presented.

F-26




6,000,000 Shares

Common Stock

LOGO


P R O S P E C T U S

                        , 2004


Citigroup
Deutsche Bank Securities
Needham & Company, Inc.
First Albany Capital





PART II

INFORMATION NOT REQUIRED IN PROSPECTUS

Item 13. Other Expenses of Issuance and Distribution.

        The following table sets forth all costs and expenses, other than underwriting discounts and commissions, payable by us in connection with the sale of the common stock being registered. All amounts shown are estimates except for the SEC registration fee, the NASD filing fee and the Nasdaq National Market filing fee.

 
  Amount paid or
to be paid

SEC registration fee   $ 6,994
NASD filing fee     16,025
Nasdaq National Market filing fee     100,000
Printing and engraving expenses     250,000
Legal fees and expenses     600,000
Accounting fees and expenses     400,000
Transfer agent and registrar fees and expenses     25,000
Miscellaneous expenses     21,981
   
  Total   $ 1,420,000
   

Item 14. Indemnification of Directors and Officers.

        We are incorporated under the laws of the State of Delaware. Section 145 of the Delaware General Corporation Law provides that a Delaware corporation may indemnify any persons who are, or are threatened to be made, parties to any threatened, pending or completed action, suit or proceeding, whether civil, criminal, administrative or investigative (other than an action by or in the right of such corporation), by reason of the fact that such person was an officer, director, employee or agent of such corporation, or is or was serving at the request of such person as an officer, director, employee or agent of another corporation or enterprise. The indemnity may include expenses (including attorneys' fees), judgments, fines and amounts paid in settlement actually and reasonably incurred by such person in connection with such action, suit or proceeding, provided that such person acted in good faith and in a manner he or she reasonably believed to be in or not opposed to the corporation's best interests and, with respect to any criminal action or proceeding, had no reasonable cause to believe that his or her conduct was illegal. A Delaware corporation may indemnify any persons who are, or are threatened to be made, a party to any threatened, pending or completed action or suit by or in the right of the corporation by reason of the fact that such person was a director, officer, employee or agent of such corporation, or is or was serving at the request of such corporation as a director, officer, employee or agent of another corporation or enterprise. The indemnity may include expenses (including attorneys' fees) actually and reasonably incurred by such person in connection with the defense or settlement of such action or suit provided such person acted in good faith and in a manner he or she reasonably believed to be in or not opposed to the corporation's best interests except that no indemnification is permitted without judicial approval if the officer or director is adjudged to be liable to the corporation. Where an officer or director is successful on the merits or otherwise in the defense of any action referred to above, the corporation must indemnify him or her against the expenses which such officer or director has actually and reasonably incurred. Our amended and restated certificate of incorporation and amended and restated bylaws, each of which will become effective upon the completion of this offering, provide for the indemnification of our directors and officers to the fullest extent permitted under the Delaware General Corporation Law.

II-1



        Section 102(b)(7) of the Delaware General Corporation Law permits a corporation to provide in its certificate of incorporation that a director of the corporation shall not be personally liable to the corporation or its stockholders for monetary damages for breach of fiduciary duties as a director, except for liability:

    for any transaction from which the director derives an improper personal benefit;

    for acts or omissions not in good faith or that involve intentional misconduct or a knowing violation of law;

    for improper payment of dividends or redemptions of shares; or

    for any breach of a director's duty of loyalty to the corporation or its stockholders.

        Our amended and restated certificate of incorporation and amended and restated bylaws include such a provision. Expenses incurred by any officer or director in defending any such action, suit or proceeding in advance of its final disposition shall be paid by us upon delivery to us of an undertaking, by or on behalf of such director or officer, to repay all amounts so advanced if it shall ultimately be determined that such director or officer is not entitled to be indemnified by us.

        Section 174 of the Delaware General Corporation Law provides, among other things, that a director, who willfully or negligently approves of an unlawful payment of dividends or an unlawful stock purchase or redemption, may be held liable for such actions. A director who was either absent when the unlawful actions were approved, or dissented at the time, may avoid liability by causing his or her dissent to such actions to be entered in the books containing minutes of the meetings of the board of directors at the time such action occurred or immediately after such absent director receives notice of the unlawful acts.

        As permitted by the Delaware General Corporation Law, we have entered into indemnity agreements with each of our directors and executive officers, that require us to indemnify such persons against any and all expenses (including attorneys' fees), witness fees, damages, judgments, fines, settlements and other amounts incurred (including expenses of a derivative action) in connection with any action, suit or proceeding, whether actual or threatened, to which any such person may be made a party by reason of the fact that such person is or was a director, an officer or an employee of us or any of our affiliated enterprises, provided that such person acted in good faith and in a manner such person reasonably believed to be in or not opposed to our best interests and, with respect to any criminal proceeding, had no reasonable cause to believe his or her conduct was unlawful. The indemnification agreements also set forth certain procedures that will apply in the event of a claim for indemnification thereunder.

        At present, there is no pending litigation or proceeding involving any of our directors or executive officers as to which indemnification is required or permitted, and we are not aware of any threatened litigation or proceeding that may result in a claim for indemnification.

        We have an insurance policy covering our officers and directors with respect to certain liabilities, including liabilities arising under the Securities Act or otherwise.

        We have entered into an underwriting agreement which provides that the underwriters are obligated, under some circumstances, to indemnify our directors, officers and controlling persons against specified liabilities, including liabilities under the Securities Act.

II-2



        Reference is made to the following documents filed as exhibits to this registration statement regarding relevant indemnification provisions described above and elsewhere herein:

Exhibit Document

  Number

Form of Underwriting Agreement

 

1.1

Form of Amended and Restated Certificate of Incorporation to be effective upon completion of this offering

 

3.1

Form of Amended and Restated Bylaws to be effective upon completion of this offering

 

3.2

Fourth Amended and Restated Investor Rights Agreement dated November 14, 2001, as amended February 27, 2002, between the Registrant and certain of its stockholders

 

4.3

Form of Indemnity Agreement

 

10.1

Item 15. Recent Sales of Unregistered Securities.

        The following list sets forth information regarding all securities sold by us since our incorporation in 1998 through June 8, 2004.

1.
Between February 1999 and September 1999, we sold an aggregate of 1,293,732 shares of common stock to 15 of our founders at a price per share of $0.002451 for aggregate consideration of $3,171.

2.
On February 1, 1999, we sold 12,239 shares of common stock to our corporate counsel at a price per share of $0.002451 for aggregate consideration of $30.

3.
Between August 1999 and September 1999, we sold an aggregate of 21,012 shares of common stock to six employees and scientific advisory board members at a price per share of $0.002451 for aggregate consideration of $52.

4.
On August 12, 1999, we sold 8,159 shares of common stock to a university as part of a license agreement at a price per share of $0.002451 for aggregate consideration of $20.

5.
On December 21, 1999, we sold 12,239 shares of common stock to a university as part of a license agreement at a price per share of $0.35 for aggregate consideration of $4,200.

6.
On March 7, 2000, we sold 2,040 shares of common stock to a university as part of a license agreement at a price per share of $0.35 for aggregate consideration of $700.

7.
On March 26, 2002, we sold 1,631 shares of common stock to a university as part of a license agreement at a price per share of $2.45 for aggregate consideration of $4,000.

8.
On January 31, 2003, we sold 4,080 shares of common stock to a university as part of a license agreement at a price per share of $0.74 for aggregate consideration of $3,000.

9.
On June 30, 2003, we sold 67,318 shares of common stock at a price per share of $0.74 for aggregate consideration of $49,500 to one accredited investor within the meaning of Rule 501(a) under the Securities Act.

10.
On October 1, 1999, we sold an aggregate of 8,648,158 shares of Series A preferred stock at a price per share of $1.42 for aggregate consideration of $12,293,357 to 23 accredited investors within the meaning of Rule 501(a) under the Securities Act.

11.
On August 10, 2000, we sold an aggregate of 2,605,326 shares of Series B preferred stock at a price per share of $3.85 for aggregate consideration of $10,029,724 to 18 accredited investors within the meaning of Rule 501(a) under the Securities Act.

II-3


12.
On November 9, 2000, we sold 1,000,000 shares of Series C preferred stock at a price per share of $4.80 for aggregate consideration of $4,800,000 to one accredited investor within the meaning of Rule 501(a) under the Securities Act.

13.
On January 9, 2001, we sold 869,328 shares of Series D preferred stock at a price per share of $7.50 for aggregate consideration of $6,519,960 to one accredited investor within the meaning of Rule 501(a) under the Securities Act.

14.
On July 17, 2001, we issued a warrant to purchase 10,199 shares of common stock having an exercise price of $2.45 per share to one accredited investor within the meaning of Rule 501(a) under the Securities Act. This warrant had a fair value of $15,750, using the Black-Scholes valuation model.

15.
On November 14, 2001, we sold an aggregate of 8,189,140 shares of Series E preferred stock at a price per share of $2.8999 for aggregate consideration of $23,750,007 to six accredited investors within the meaning of Rule 501(a) under the Securities Act.

16.
On February 27, 2002, we sold an aggregate of 4,513,074 shares of Series E preferred stock at a price per share of $2.8999 for aggregate consideration of $13,087,463 to seven accredited investors within the meaning of Rule 501(a) under the Securities Act.

17.
We granted 457,069 shares of restricted common stock to directors, employees and consultants under our amended and restated 2004 equity incentive plan at purchase prices ranging from $0.35 to $0.94 per share for aggregate consideration of $180,712. The shares of restricted stock do not include 50,999 shares issued upon the early exercise of options granted under our amended and restated 2004 equity incentive plan at exercise prices ranging from $0.74 to $2.45 per share.

18.
We granted options to purchase an aggregate of 2,117,768 shares of common stock, including options subsequently cancelled that then became available again for new option grants under our amended and restated 2004 equity incentive plan at exercise prices ranging from $0.35 to $9.10 per share. Of these, options to purchase 841,164 shares of common stock have been exercised for aggregate consideration of $867,577, at exercise prices ranging from $0.35 to $2.45 per share.

        The offers, sales and issuances of the above securities were deemed to be exempt from registration under the Securities Act in reliance on Section 4(2) of the Securities Act and/or Regulation D promulgated thereunder or Rule 701 promulgated under Section 3(b) of the Securities Act as transactions by an issuer not involving a public offering or transactions under compensatory benefit plans and contracts relating to compensation as provided under such Rule 701. The recipients of securities in each such transaction represented their intention to acquire the securities for investment only and not with a view to or for sale in connection with any distribution thereof and appropriate legends were affixed to the share certificates and warrants issued in such transactions. All recipients had adequate access, through employment or other relationships, to information about us.

        There were no underwriters employed in connection with any of the transactions set forth in this Item 15.

II-4


Item 16. Exhibits and Financial Statement Schedules.

(a)   Exhibits.

Exhibit
Number

  Description of Document
1.1 (1) Form of Underwriting Agreement.
3.1 (1) Form of Amended and Restated Certificate of Incorporation to be effective upon completion of this offering.
3.2 (1) Form of Amended and Restated Bylaws to be effective upon completion of this offering.
4.1 (1) Form of Common Stock Certificate.
4.2 (1) Warrant dated July 17, 2001, as amended November 14, 2001, issued to Silicon Valley Bank.
4.3 (1) Fourth Amended and Restated Investor Rights Agreement dated November 14, 2001, as amended February 27, 2002, between the Registrant and certain of its stockholders.
5.1 (1) Opinion of Cooley Godward LLP.
10.1 (1)+ Form of Indemnity Agreement.
10.2 (1)+ Amended and Restated 2004 Equity Incentive Plan.
10.3 (1)+ Forms of Stock Option Agreements under the Amended and Restated 2004 Equity Incentive Plan.
10.4 (1)+ 2004 Employee Stock Purchase Plan and Form of Offering Document thereunder.
10.5 (1)+ Employment letter agreement dated February 21, 2000 between the Registrant and Mark Zoller, Ph.D.
10.6 (1)+ Employment letter agreement dated June 7, 2000 between the Registrant and Klaus Gubernator, Ph.D.
10.7 (1)+ Employment letter agreement dated June 2, 2003 between the Registrant and Kent Snyder.
10.8 (1)+ Employment letter agreement dated August 25, 2003 between the Registrant and Harry Leonhardt, Esq.
10.9 (1)+ Employment letter agreement dated September 8, 2003 between the Registrant and John Poyhonen.
10.10 (1) Expansion Lease dated November 20, 1995 between Health Science Properties, Inc. and Sequana Therapeutics, Inc., as amended, and Assignment and Assumption of Lease, dated July 12, 2000, as amended, between the Registrant and Axys Pharmaceuticals, Inc.
10.11 (1)* Exclusive License and Bailment Agreement dated March 10, 2000 between the Registrant and the Regents of the University of California.
10.12 (1)* Collaborative Research and License Agreement dated November 1, 2000, as amended April 16, 2002, between the Registrant and Aurora Biosciences Corporation.
10.13 (1)* Collaborative Research and License Agreement dated December 6, 2000, as amended May 2, 2002, between the Registrant and Kraft Foods, Inc.
10.14 (1)* Collaborative Research and License Agreement dated March 28, 2001, as amended July 26, 2002, November 5, 2002 and February 19, 2004 between the Registrant and Campbell Soup Company.
     

II-5


10.15 (1)* Collaborative Research and License Agreement dated April 18, 2002, as amended October 23, 2003, between the Registrant and Nestec, Ltd.
10.16 (1)* Collaborative Research, Development, Commercialization and License Agreement dated April 22, 2002, as amended April 7, 2004, between the Registrant and the Coca-Cola Company.
10.17 + 1999 Equity Incentive Plan and Form of Stock Option Agreement thereunder.
23.1   Consent of Ernst & Young LLP, independent registered public accounting firm.
23.2 Consent of Cooley Godward LLP. Reference is made to Exhibit 5.1.
24.1 (1) Power of Attorney. Reference is made to the signature page hereto.

+
Indicates management contract or compensatory plan.

*
Confidential treatment has been requested with respect to certain portions of this exhibit. Omitted portions have been filed separately with the Securities and Exchange Commission.

(1)
Previously filed.

(b)   Financial Statement Schedules.

        No financial statement schedules are provided because the information called for is not required or is shown either in the financial statements or the notes thereto.

Item 17. Undertakings.

        The undersigned Registrant hereby undertakes to provide to the underwriters at the closing specified in the Underwriting Agreement, certificates in such denominations and registered in such names as required by the underwriters to permit prompt delivery to each purchaser.

        Insofar as indemnification for liabilities arising under the Securities Act may be permitted to directors, officers and controlling persons of the Registrant pursuant to the foregoing provisions, or otherwise, the Registrant has been advised that in the opinion of the Securities and Exchange Commission such indemnification is against public policy as expressed in the Securities Act and is, therefore, unenforceable. In the event that a claim for indemnification against such liabilities (other than the payment by the Registrant of expenses incurred or paid by a director, officer or controlling person of the Registrant in the successful defense of any action, suit or proceeding) is asserted by such director, officer or controlling person in connection with the securities being registered, the Registrant will, unless in the opinion of its counsel the matter has been settled by controlling precedent, submit to a court of appropriate jurisdiction the question whether such indemnification by it is against public policy as expressed in the Securities Act and will be governed by the final adjudication of such issue.

        The undersigned Registrant hereby undertakes that:

            (1)   For purposes of determining any liability under the Securities Act, the information omitted from the form of prospectus filed as part of this Registration Statement in reliance upon Rule 430A and contained in a form of prospectus filed by the Registrant pursuant to Rule 424(b)(1) or (4) or 497(h) under the Securities Act shall be deemed to be part of this Registration Statement as of the time it was declared effective.

            (2)   For the purpose of determining any liability under the Securities Act, each post-effective amendment that contains a form of prospectus shall be deemed to be a new registration statement relating to the securities offered therein, and the offering of such securities at that time shall be deemed to be the initial bona fide offering thereof.

II-6



SIGNATURES

        Pursuant to the requirements of the Securities Act of 1933, the Registrant has duly caused this Amendment No. 5 to Registration Statement to be signed on its behalf by the undersigned, thereunto duly authorized, in the City of San Diego, State of California, on the 17th day of June, 2004.


 

 

SENOMYX, INC.

 

 

By:

 

/s/  
KENT SNYDER       
Kent Snyder
President and Chief Executive Officer

        Pursuant to the requirements of the Securities Act of 1933, this Amendment No. 5 to Registration Statement has been signed by the following persons in the capacities and on the dates indicated.

Signature
  Title
  Date
         

/s/  
KENT SNYDER       
Kent Snyder

 

President, Chief Executive Officer and Director (
Principal Executive Officer )

 

June 17, 2004

/s/  
JOHN POYHONEN           
John Poyhonen

 

Vice President and Chief Financial and Business Officer (
Principal Financial and Accounting Officer )

 

June 17, 2004

/s/  
MARK LESCHLY*       
Mark Leschly

 

Director

 

June 17, 2004

/s/  
LORI ROBSON, PH.D.*       
Lori Robson, Ph.D.

 

Director

 

June 17, 2004

/s/  
DAVID SCHNELL, M.D.*       
David Schnell, M.D.

 

Director

 

June 17, 2004

/s/  
TIMOTHY J. WOLLAEGER*       
Timothy J. Wollaeger

 

Director

 

June 17, 2004

/s/  
JAY M. SHORT*       
Jay M. Short, Ph.D.

 

Director

 

June 17, 2004
*By:   /s/   KENT SNYDER       
Kent Snyder
Attorney-in-fact
       


EXHIBIT INDEX

Exhibit
Number

  Description of Document

1.1

(1)

Form of Underwriting Agreement.

3.1

(1)

Form of Amended and Restated Certificate of Incorporation to be effective upon completion of this offering.

3.2

(1)

Form of Amended and Restated Bylaws to be effective upon completion of this offering.

4.1

(1)

Form of Common Stock Certificate.

4.2

(1)

Warrant dated July 17, 2001, as amended November 14, 2001, issued to Silicon Valley Bank.

4.3

(1)

Fourth Amended and Restated Investor Rights Agreement dated November 14, 2001, as amended February 27, 2002, between the Registrant and certain of its stockholders.

5.1

(1)

Opinion of Cooley Godward LLP.

10.1

(1)+

Form of Indemnity Agreement.

10.2

(1)+

Amended and Restated 2004 Equity Incentive Plan.

10.3

(1)+

Forms of Stock Option Agreements under the Amended and Restated 2004 Equity Incentive Plan.

10.4

(1)+

2004 Employee Stock Purchase Plan and Form of Offering Document thereunder.

10.5

(1)+

Employment letter agreement dated February 21, 2000 between the Registrant and Mark Zoller, Ph.D.

10.6

(1)+

Employment letter agreement dated June 7, 2000 between the Registrant and Klaus Gubernator, Ph.D.

10.7

(1)+

Employment letter agreement dated June 2, 2003 between the Registrant and Kent Snyder.

10.8

(1)+

Employment letter agreement dated August 25, 2003 between the Registrant and Harry Leonhardt, Esq.

10.9

(1)+

Employment letter agreement dated September 8, 2003 between the Registrant and John Poyhonen.

10.10

(1)

Expansion Lease dated November 20, 1995 between Health Science Properties, Inc. and Sequana Therapeutics, Inc., as amended, and Assignment and Assumption of Lease, dated July 12, 2000, as amended, between the Registrant and Axys Pharmaceuticals, Inc.

10.11

(1)*

Exclusive License and Bailment Agreement dated March 10, 2000 between the Registrant and the Regents of the University of California.

10.12

(1)*

Collaborative Research and License Agreement dated November 1, 2000, as amended April 16, 2002, between the Registrant and Aurora Biosciences Corporation.

10.13

(1)*

Collaborative Research and License Agreement dated December 6, 2000, as amended May 2, 2002, between the Registrant and Kraft Foods, Inc.

10.14

(1)*

Collaborative Research and License Agreement dated March 28, 2001, as amended July 26, 2002, November 5, 2002 and February 19, 2004 between the Registrant and Campbell Soup Company.

10.15

(1)*

Collaborative Research and License Agreement dated April 18, 2002, as amended October 23, 2003, between the Registrant and Nestec, Ltd.
     


10.16

(1)*

Collaborative Research, Development, Commercialization and License Agreement dated April 22, 2002, as amended April 7, 2004, between the Registrant and the Coca-Cola Company.

10.17

+

1999 Equity Incentive Plan and Form of Stock Option Agreement thereunder.

23.1

 

Consent of Ernst & Young LLP, independent registered public accounting firm.

23.2

 

Consent of Cooley Godward LLP. Reference is made to Exhibit 5.1.

24.1

(1)

Power of Attorney. Reference is made to the signature page hereto.

+
Indicates management contract or compensatory plan.

*
Confidential treatment has been requested with respect to certain portions of this exhibit. Omitted portions have been filed separately with the Securities and Exchange Commission.

(1)
Previously filed.



QuickLinks

TABLE OF CONTENTS
SUMMARY
Our Company
Our Product Candidates
Our Discovery and Development Approach
Our Strategy
Risks Affecting Us
Corporate Information
The Offering
Summary Financial Data
RISK FACTORS
FORWARD-LOOKING STATEMENTS
NOTICE TO INVESTORS
USE OF PROCEEDS
DIVIDEND POLICY
CAPITALIZATION
DILUTION
SELECTED FINANCIAL DATA
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS
BUSINESS
MANAGEMENT
Summary Compensation Table (1)
CERTAIN TRANSACTIONS
PRINCIPAL STOCKHOLDERS
DESCRIPTION OF CAPITAL STOCK
MATERIAL UNITED STATES FEDERAL INCOME TAX CONSEQUENCES TO NON-UNITED STATES HOLDERS
SHARES ELIGIBLE FOR FUTURE SALE
UNDERWRITING
LEGAL MATTERS
EXPERTS
WHERE YOU CAN FIND ADDITIONAL INFORMATION
Senomyx, Inc. Index to Financial Statements
Report of Independent Registered Public Accounting Firm
Senomyx, Inc. Balance Sheets (In thousands, except share and per share data)
Senomyx, Inc. Statements of Operations (In thousands, except share and per share data)
Senomyx, Inc. Statements of Cash Flows (In thousands)
Senomyx, Inc. Notes to Financial Statements (Information as of March 31, 2004 and for the three months ended March 31, 2003 and 2004 is unaudited)
PART II INFORMATION NOT REQUIRED IN PROSPECTUS
SIGNATURES
EXHIBIT INDEX

Exhibit 10.17

SENOMYX, INC.

1999 EQUITY INCENTIVE PLAN

Adopted January 30, 1999
Approved By Stockholders February 26, 1999

First Amendment Approved by
the Board effective as of September 21, 1999 and
the Stockholders effective as of September 20, 1999

Second Amendment Approved by
the Board effective as of August 30, 2000 and
the Stockholders effective as of September 6, 2000

Third Amendment Approved by
the Board effective as of December 12, 2000 and
the Stockholders effective as of January 9, 2001

Fourth Amendment Approved by
the Board effective as of June 12, 2001 and
the Stockholders effective as of July 5, 2001

Fifth Amendment Approved by
the Board effective as of November 12, 2001 and
the Stockholders effective as of November 13, 2001

Termination Date: January 29, 2009

1.     PURPOSES.

         (a)   Eligible Stock Award Recipients. The persons eligible to receive Stock Awards are the Employees, Directors and Consultants of the Company and its Affiliates.

         (b)   Available Stock Awards. The purpose of the Plan is to provide a means by which eligible recipients of Stock Awards may be given an opportunity to benefit from increases in value of the Common Stock through the granting of the following Stock Awards: (i) Incentive Stock Options, (ii) Nonstatutory Stock Options, (iii) stock bonuses and (iv) rights to acquire restricted stock.

         (c)   General Purpose. The Company, by means of the Plan, seeks to retain the services of the group of persons eligible to receive Stock Awards, to secure and retain the services of new members of this group and to provide incentives for such persons to exert maximum efforts for the success of the Company and its Affiliates.

2.     DEFINITIONS.

         (a)    "Affiliate" means any parent corporation or subsidiary corporation of the Company, whether now or hereafter existing, as those terms are defined in Sections 424(e) and (f), respectively, of the Code.

         (b)    "Board" means the Board of Directors of the Company.

         (c)    "Code" means the Internal Revenue Code of 1986, as amended.

         (d)    "Committee" means a committee of one or more members of the Board appointed by the Board in accordance with subsection 3(c).

         (e)    "Common Stock" means the common stock of the Company.

         (f)     "Company" means Senomyx, Inc., a Delaware corporation.

1



         (g)    "Consultant" means any person, including an advisor, (i) engaged by the Company or an Affiliate to render consulting or advisory services and who is compensated for such services or (ii) who is a member of the Board of Directors of an Affiliate. However, the term "Consultant" shall not include either Directors who are not compensated by the Company for their services as Directors or Directors who are merely paid a director's fee by the Company for their services as Directors.

         (h)    "Continuous Service" means that the Participant's service with the Company or an Affiliate, whether as an Employee, Director or Consultant, is not interrupted or terminated. The Participant's Continuous Service shall not be deemed to have terminated merely because of a change in the capacity in which the Participant renders service to the Company or an Affiliate as an Employee, Consultant or Director or a change in the entity for which the Participant renders such service, provided that there is no interruption or termination of the Participant's Continuous Service. For example, a change in status from an Employee of the Company to a Consultant of an Affiliate or a Director will not constitute an interruption of Continuous Service. The Board or the chief executive officer of the Company, in that party's sole discretion, may determine whether Continuous Service shall be considered interrupted in the case of any leave of absence approved by that party, including sick leave, military leave or any other personal leave.

         (i)     "Covered Employee" means the chief executive officer and the four (4) other highest compensated officers of the Company for whom total compensation is required to be reported to stockholders under the Exchange Act, as determined for purposes of Section 162(m) of the Code.

         (j)     "Director" means a member of the Board of Directors of the Company.

         (k)    "Disability" means (i) before the Listing Date, the inability of a person, in the opinion of a qualified physician acceptable to the Company, to perform the major duties of that person's position with the Company or an Affiliate of the Company because of the sickness or injury of the person and (ii) after the Listing Date, the permanent and total disability of a person within the meaning of Section 22(e)(3) of the Code.

         (l)     "Employee" means any person employed by the Company or an Affiliate. Mere service as a Director or payment of a director's fee by the Company or an Affiliate shall not be sufficient to constitute "employment" by the Company or an Affiliate.

         (m)   "Exchange Act" means the Securities Exchange Act of 1934, as amended.

         (n)   " Fair Market Value" means, as of any date, the value of the Common Stock determined as follows:

         (o)    "Incentive Stock Option" means an Option intended to qualify as an incentive stock option within the meaning of Section 422 of the Code and the regulations promulgated thereunder.

         (p)    "Listing Date" means the first date upon which any security of the Company is listed (or approved for listing) upon notice of issuance on any securities exchange or designated (or approved for

2



designation) upon notice of issuance as a national market security on an interdealer quotation system if such securities exchange or interdealer quotation system has been certified in accordance with the provisions of Section 25100(o) of the California Corporate Securities Law of 1968.

         (q)    "Non-Employee Director" means a Director who either (i) is not a current Employee or Officer of the Company or its parent or a subsidiary, does not receive compensation (directly or indirectly) from the Company or its parent or a subsidiary for services rendered as a consultant or in any capacity other than as a Director (except for an amount as to which disclosure would not be required under Item 404(a) of Regulation S-K promulgated pursuant to the Securities Act ("Regulation S-K")), does not possess an interest in any other transaction as to which disclosure would be required under Item 404(a) of Regulation S-K and is not engaged in a business relationship as to which disclosure would be required under Item 404(b) of Regulation S-K; or (ii) is otherwise considered a "non-employee director" for purposes of Rule 16b-3.

         (r)    "Nonstatutory Stock Option" means an Option not intended to qualify as an Incentive Stock Option.

         (s)    "Officer" means (i) before the Listing Date, any person designated by the Company as an officer and (ii) on and after the Listing Date, a person who is an officer of the Company within the meaning of Section 16 of the Exchange Act and the rules and regulations promulgated thereunder.

         (t)     "Option" means an Incentive Stock Option or a Nonstatutory Stock Option granted pursuant to the Plan.

         (u)    "Option Agreement" means a written agreement between the Company and an Optionholder evidencing the terms and conditions of an individual Option grant. Each Option Agreement shall be subject to the terms and conditions of the Plan.

         (v)    "Optionholder" means a person to whom an Option is granted pursuant to the Plan or, if applicable, such other person who holds an outstanding Option.

         (w)   "Outside Director" means a Director who either (i) is not a current employee of the Company or an "affiliated corporation" (within the meaning of Treasury Regulations promulgated under Section 162(m) of the Code), is not a former employee of the Company or an "affiliated corporation" receiving compensation for prior services (other than benefits under a tax qualified pension plan), was not an officer of the Company or an "affiliated corporation" at any time and is not currently receiving direct or indirect remuneration from the Company or an "affiliated corporation" for services in any capacity other than as a Director or (ii) is otherwise considered an "outside director" for purposes of Section 162(m) of the Code.

         (x)    "Participant" means a person to whom a Stock Award is granted pursuant to the Plan or, if applicable, such other person who holds an outstanding Stock Award.

         (y)    "Plan" means this Senomyx, Inc. 1999 Equity Incentive Plan.

         (z)    "Rule 16b-3" means Rule 16b-3 promulgated under the Exchange Act or any successor to Rule 16b-3, as in effect from time to time.

         (aa) "Securities Act" means the Securities Act of 1933, as amended.

         (bb) "Stock Award" means any right granted under the Plan, including an Option, a stock bonus and a right to acquire restricted stock.

         (cc) "Stock Award Agreement" means a written agreement between the Company and a holder of a Stock Award evidencing the terms and conditions of an individual Stock Award grant. Each Stock Award Agreement shall be subject to the terms and conditions of the Plan.

3


         (dd) "Ten Percent Stockholder" means a person who owns (or is deemed to own pursuant to Section 424(d) of the Code) stock possessing more than ten percent (10%) of the total combined voting power of all classes of stock of the Company or of any of its Affiliates.

3.     ADMINISTRATION.

         (a)   Administration by Board. The Board shall administer the Plan unless and until the Board delegates administration to a Committee, as provided in subsection 3(c). Any interpretation of the Plan by the Board and any decision by the Board under the Plan shall be final and binding on all persons.

         (b)   Powers of Board. The Board shall have the power, subject to, and within the limitations of, the express provisions of the Plan:

         (c)   Delegation to Committee.

4


4.     SHARES SUBJECT TO THE PLAN.

         (a)   Share Reserve. Subject to the provisions of Section 11 relating to adjustments upon changes in Common Stock, the Common Stock that may be issued pursuant to Stock Awards shall not exceed in the aggregate Three Million Seven Hundred Ninety Thousand (3,790,000) shares of Common Stock.

         (b)   Reversion of Shares to the Share Reserve. If any Stock Award shall for any reason expire or otherwise terminate, in whole or in part, without having been exercised in full, the shares of Common Stock not acquired under such Stock Award shall revert to and again become available for issuance under the Plan.

         (c)   Source of Shares. The shares of Common Stock subject to the Plan may be unissued shares or reacquired shares, bought on the market or otherwise.

5.     ELIGIBILITY.

         (a)   Eligibility for Specific Stock Awards. Incentive Stock Options may be granted only to Employees. Stock Awards other than Incentive Stock Options may be granted to Employees, Directors and Consultants.

         (b)   Ten Percent Stockholders.

         (c)   Section 162(m) Limitation. Subject to the provisions of Section 11 relating to adjustments upon changes in the shares of Common Stock, no Employee shall be eligible to be granted Options covering more than two million (2,000,000) shares of Common Stock during any calendar year. This subsection 5(c) shall not apply prior to the Listing Date and, following the Listing Date, this subsection 5(c) shall not apply until (i) the earliest of: (1) the first material modification of the Plan (including any increase in the number of shares of Common Stock reserved for issuance under the Plan in accordance with Section 4); (2) the issuance of all of the shares of Common Stock reserved for issuance under the Plan; (3) the expiration of the Plan; or (4) the first meeting of stockholders at which Directors are to be elected that occurs after the close of the third calendar year following the calendar year in which occurred the first registration of an equity security under Section 12 of the Exchange Act; or (ii) such other date required by Section 162(m) of the Code and the rules and regulations promulgated thereunder.

5


6.     OPTION PROVISIONS.

        Each Option shall be in such form and shall contain such terms and conditions as the Board shall deem appropriate. All Options shall be separately designated Incentive Stock Options or Nonstatutory Stock Options at the time of grant, and, if certificates are issued, a separate certificate or certificates will be issued for shares of Common Stock purchased on exercise of each type of Option. The provisions of separate Options need not be identical, but each Option shall include (through incorporation of provisions hereof by reference in the Option or otherwise) the substance of each of the following provisions:

         (a)   Term. Subject to the provisions of subsection 5(b) regarding Ten Percent Stockholders, no Option shall be exercisable after the expiration of ten (10) years from the date it was granted.

         (b)   Exercise Price of an Incentive Stock Option. Subject to the provisions of subsection 5(b) regarding Ten Percent Stockholders, the exercise price of each Incentive Stock Option shall be not less than one hundred percent (100%) of the Fair Market Value of the Common Stock subject to the Option on the date the Option is granted. Notwithstanding the foregoing, an Incentive Stock Option may be granted with an exercise price lower than that set forth in the preceding sentence if such Option is granted pursuant to an assumption or substitution for another option in a manner satisfying the provisions of Section 424(a) of the Code.

         (c)   Exercise Price of a Nonstatutory Stock Option. Subject to the provisions of subsection 5(b) regarding Ten Percent Stockholders, the exercise price of each Nonstatutory Stock Option granted prior to the Listing Date shall be not less than eighty-five percent (85%) of the Fair Market Value of the Common Stock subject to the Option on the date the Option is granted. The exercise price of each Nonstatutory Stock Option granted on or after the Listing Date shall be not less than eighty-five percent (85%) of the Fair Market Value of the Common Stock subject to the Option on the date the Option is granted. Notwithstanding the foregoing, a Nonstatutory Stock Option may be granted with an exercise price lower than that set forth in the preceding sentence if such Option is granted pursuant to an assumption or substitution for another option in a manner satisfying the provisions of Section 424(a) of the Code.

         (d)   Consideration. The purchase price of Common Stock acquired pursuant to an Option shall be paid, to the extent permitted by applicable statutes and regulations, either (i) in cash at the time the Option is exercised or (ii) at the discretion of the Board at the time of the grant of the Option (or subsequently in the case of a Nonstatutory Stock Option) (1) by delivery to the Company of other Common Stock, (2) according to a deferred payment or other similar arrangement with the Optionholder or (3) in any other form of legal consideration that may be acceptable to the Board; provided, however, that at any time that the Company is incorporated in Delaware, payment of the Common Stock's "par value," as defined in the Delaware General Corporation Law, shall not be made by deferred payment.

         (e)   Transferability of an Incentive Stock Option. An Incentive Stock Option shall not be transferable except by will or by the laws of descent and distribution and shall be exercisable during the lifetime of the Optionholder only by the Optionholder. Notwithstanding the foregoing, the Optionholder may, by delivering written notice to the Company, in a form satisfactory to the Company, designate a third party who, in the event of the death of the Optionholder, shall thereafter be entitled to exercise the Option.

         (f)    Transferability of a Nonstatutory Stock Option. A Nonstatutory Stock Option granted prior to the Listing Date shall not be transferable except by will or by the laws of descent and distribution and, to the extent provided in the Option Agreement, to such further extent as permitted by Section 260.140.41(d) of Title 10 of the California Code of Regulations at the time of the grant of the Option, and shall be exercisable during the lifetime of the Optionholder only by the Optionholder.

6



A Nonstatutory Stock Option granted on or after the Listing Date shall be transferable to the extent provided in the Option Agreement. If the Nonstatutory Stock Option does not provide for transferability, then the Nonstatutory Stock Option shall not be transferable except by will or by the laws of descent and distribution and shall be exercisable during the lifetime of the Optionholder only by the Optionholder. Notwithstanding the foregoing, the Optionholder may, by delivering written notice to the Company, in a form satisfactory to the Company, designate a third party who, in the event of the death of the Optionholder, shall thereafter be entitled to exercise the Option.

         (g)   Vesting Generally. The total number of shares of Common Stock subject to an Option may, but need not, vest and therefore become exercisable in periodic installments that may, but need not, be equal. The Option may be subject to such other terms and conditions on the time or times when it may be exercised (which may be based on performance or other criteria) as the Board may deem appropriate. The vesting provisions of individual Options may vary. The provisions of this subsection 6(g) are subject to any Option provisions governing the minimum number of shares of Common Stock as to which an Option may be exercised.

         (h)   Minimum Vesting Prior to the Listing Date. Notwithstanding the foregoing subsection 6(g), to the extent that the following restrictions on vesting are required by Section 260.140.41(f) of Title 10 of the California Code of Regulations at the time of the grant of the Option, then:

         (i)    Termination of Continuous Service. In the event an Optionholder's Continuous Service terminates (other than upon the Optionholder's death or Disability), the Optionholder may exercise his or her Option (to the extent that the Optionholder was entitled to exercise such Option as of the date of termination) but only within such period of time ending on the earlier of (i) the date three (3) months following the termination of the Optionholder's Continuous Service (or such longer or shorter period specified in the Option Agreement, which period shall not be less than thirty (30) days for Options granted prior to the Listing Date unless such termination is for cause), or (ii) the expiration of the term of the Option as set forth in the Option Agreement. If, after termination, the Optionholder does not exercise his or her Option within the time specified in the Option Agreement, the Option shall terminate.

         (j)    Extension of Termination Date. An Optionholder's Option Agreement may also provide that if the exercise of the Option following the termination of the Optionholder's Continuous Service (other than upon the Optionholder's death or Disability) would be prohibited at any time solely because the issuance of shares of Common Stock would violate the registration requirements under the Securities Act, then the Option shall terminate on the earlier of (i) the expiration of the term of the Option set forth in subsection 6(a) or (ii) the expiration of a period of three (3) months after the termination of the Optionholder's Continuous Service during which the exercise of the Option would not be in violation of such registration requirements.

         (k)   Disability of Optionholder. In the event that an Optionholder's Continuous Service terminates as a result of the Optionholder's Disability, the Optionholder may exercise his or her Option (to the extent that the Optionholder was entitled to exercise such Option as of the date of termination), but only within such period of time ending on the earlier of (i) the date twelve (12) months following such termination (or such longer or shorter period specified in the Option Agreement, which period shall

7



not be less than six (6) months for Options granted prior to the Listing Date) or (ii) the expiration of the term of the Option as set forth in the Option Agreement. If, after termination, the Optionholder does not exercise his or her Option within the time specified herein, the Option shall terminate.

         (l)    Death of Optionholder. In the event (i) an Optionholder's Continuous Service terminates as a result of the Optionholder's death or (ii) the Optionholder dies within the period (if any) specified in the Option Agreement after the termination of the Optionholder's Continuous Service for a reason other than death, then the Option may be exercised (to the extent the Optionholder was entitled to exercise such Option as of the date of death) by the Optionholder's estate, by a person who acquired the right to exercise the Option by bequest or inheritance or by a person designated to exercise the option upon the Optionholder's death pursuant to subsection 6(e) or 6(f), but only within the period ending on the earlier of (1) the date eighteen (18) months following the date of death (or such longer or shorter period specified in the Option Agreement, which period shall not be less than six (6) months for Options granted prior to the Listing Date) or (2) the expiration of the term of such Option as set forth in the Option Agreement. If, after death, the Option is not exercised within the time specified herein, the Option shall terminate.

         (m)  Early Exercise. The Option may, but need not, include a provision whereby the Optionholder may elect at any time before the Optionholder's Continuous Service terminates to exercise the Option as to any part or all of the shares of Common Stock subject to the Option prior to the full vesting of the Option. Subject to the "Repurchase Limitation" in subsection 10(h), any unvested shares of Common Stock so purchased may be subject to a repurchase option in favor of the Company or to any other restriction the Board determines to be appropriate.

         (n)   Right of Repurchase. Subject to the "Repurchase Limitation" in subsection 10(h), the Option may, but need not, include a provision whereby the Company may elect, prior to the Listing Date, to repurchase all or any part of the vested shares of Common Stock acquired by the Optionholder pursuant to the exercise of the Option.

         (o)   Right of First Refusal. The Option may, but need not, include a provision whereby the Company may elect, prior to the Listing Date, to exercise a right of first refusal following receipt of notice from the Optionholder of the intent to transfer all or any part of the shares of Common Stock received upon the exercise of the Option. Except as expressly provided in this subsection 6(o), such right of first refusal shall otherwise comply with any applicable provisions of the Bylaws of the Company.

         (p)   Re-Load Options. Without in any way limiting the authority of the Board to make or not to make grants of Options hereunder, the Board shall have the authority (but not an obligation) to include as part of any Option Agreement a provision entitling the Optionholder to a further Option (a "Re-Load Option") in the event the Optionholder exercises the Option evidenced by the Option Agreement, in whole or in part, by surrendering other shares of Common Stock in accordance with this Plan and the terms and conditions of the Option Agreement. Any such Re-Load Option shall (i) provide for a number of shares of Common Stock equal to the number of shares of Common Stock surrendered as part or all of the exercise price of such Option; (ii) have an expiration date which is the same as the expiration date of the Option the exercise of which gave rise to such Re-Load Option; and (iii) have an exercise price which is equal to one hundred percent (100%) of the Fair Market Value of the Common Stock subject to the Re-Load Option on the date of exercise of the original Option. Notwithstanding the foregoing, a Re-Load Option shall be subject to the same exercise price and term provisions heretofore described for Options under the Plan.

        Any such Re-Load Option may be an Incentive Stock Option or a Nonstatutory Stock Option, as the Board may designate at the time of the grant of the original Option; provided, however, that the designation of any Re-Load Option as an Incentive Stock Option shall be subject to the one hundred thousand dollar ($100,000) annual limitation on the exercisability of Incentive Stock Options described

8



in subsection 10(d) and in Section 422(d) of the Code. There shall be no Re-Load Options on a Re-Load Option. Any such Re-Load Option shall be subject to the availability of sufficient shares of Common Stock under subsection 4(a) and the "Section 162(m) Limitation" on the grants of Options under subsection 5(c) and shall be subject to such other terms and conditions as the Board may determine which are not inconsistent with the express provisions of the Plan regarding the terms of Options.

7.     PROVISIONS OF STOCK AWARDS OTHER THAN OPTIONS.

         (a)   Stock Bonus Awards. Each stock bonus agreement shall be in such form and shall contain such terms and conditions as the Board shall deem appropriate. The terms and conditions of stock bonus agreements may change from time to time, and the terms and conditions of separate stock bonus agreements need not be identical, but each stock bonus agreement shall include (through incorporation of provisions hereof by reference in the agreement or otherwise) the substance of each of the following provisions:

         (b)   Restricted Stock Awards. Each restricted stock purchase agreement shall be in such form and shall contain such terms and conditions as the Board shall deem appropriate. The terms and conditions of the restricted stock purchase agreements may change from time to time, and the terms and conditions of separate restricted stock purchase agreements need not be identical, but each restricted stock purchase agreement shall include (through incorporation of provisions hereof by reference in the agreement or otherwise) the substance of each of the following provisions:

9


8.     COVENANTS OF THE COMPANY.

         (a)   Availability of Shares. During the terms of the Stock Awards, the Company shall keep available at all times the number of shares of Common Stock required to satisfy such Stock Awards.

         (b)   Securities Law Compliance. The Company shall seek to obtain from each regulatory commission or agency having jurisdiction over the Plan such authority as may be required to grant Stock Awards and to issue and sell shares of Common Stock upon exercise of the Stock Awards; provided, however, that this undertaking shall not require the Company to register under the Securities Act the Plan, any Stock Award or any Common Stock issued or issuable pursuant to any such Stock Award. If, after reasonable efforts, the Company is unable to obtain from any such regulatory commission or agency the authority which counsel for the Company deems necessary for the lawful issuance and sale of Common Stock under the Plan, the Company shall be relieved from any liability for failure to issue and sell Common Stock upon exercise of such Stock Awards unless and until such authority is obtained.

9.     USE OF PROCEEDS FROM STOCK.

        Proceeds from the sale of Common Stock pursuant to Stock Awards shall constitute general funds of the Company.

10.   MISCELLANEOUS.

         (a)   Acceleration of Exercisability and Vesting. The Board shall have the power to accelerate the time at which a Stock Award may first be exercised or the time during which a Stock Award or any

10


part thereof will vest in accordance with the Plan, notwithstanding the provisions in the Stock Award stating the time at which it may first be exercised or the time during which it will vest.

         (b)   Stockholder Rights. No Participant shall be deemed to be the holder of, or to have any of the rights of a holder with respect to, any shares of Common Stock subject to such Stock Award unless and until such Participant has satisfied all requirements for exercise of the Stock Award pursuant to its terms.

         (c)   No Employment or other Service Rights. Nothing in the Plan or any instrument executed or Stock Award granted pursuant thereto shall confer upon any Participant any right to continue to serve the Company or an Affiliate in the capacity in effect at the time the Stock Award was granted or shall affect the right of the Company or an Affiliate to terminate (i) the employment of an Employee with or without notice and with or without cause, (ii) the service of a Consultant pursuant to the terms of such Consultant's agreement with the Company or an Affiliate or (iii) the service of a Director pursuant to the Bylaws of the Company or an Affiliate, and any applicable provisions of the corporate law of the state in which the Company or the Affiliate is incorporated, as the case may be.

         (d)   Incentive Stock Option $100,000 Limitation. To the extent that the aggregate Fair Market Value (determined at the time of grant) of Common Stock with respect to which Incentive Stock Options are exercisable for the first time by any Optionholder during any calendar year (under all plans of the Company and its Affiliates) exceeds one hundred thousand dollars ($100,000), the Options or portions thereof which exceed such limit (according to the order in which they were granted) shall be treated as Nonstatutory Stock Options.

         (e)   Investment Assurances. The Company may require a Participant, as a condition of exercising or acquiring Common Stock under any Stock Award, (i) to give written assurances satisfactory to the Company as to the Participant's knowledge and experience in financial and business matters and/or to employ a purchaser representative reasonably satisfactory to the Company who is knowledgeable and experienced in financial and business matters and that he or she is capable of evaluating, alone or together with the purchaser representative, the merits and risks of exercising the Stock Award; and (ii) to give written assurances satisfactory to the Company stating that the Participant is acquiring Common Stock subject to the Stock Award for the Participant's own account and not with any present intention of selling or otherwise distributing the Common Stock. The foregoing requirements, and any assurances given pursuant to such requirements, shall be inoperative if (1) the issuance of the shares of Common Stock upon the exercise or acquisition of Common Stock under the Stock Award has been registered under a then currently effective registration statement under the Securities Act or (2) as to any particular requirement, a determination is made by counsel for the Company that such requirement need not be met in the circumstances under the then applicable securities laws. The Company may, upon advice of counsel to the Company, place legends on stock certificates issued under the Plan as such counsel deems necessary or appropriate in order to comply with applicable securities laws, including, but not limited to, legends restricting the transfer of the Common Stock.

         (f)    Withholding Obligations. To the extent provided by the terms of a Stock Award Agreement, the Participant may satisfy any federal, state or local tax withholding obligation relating to the exercise or acquisition of Common Stock under a Stock Award by any of the following means (in addition to the Company's right to withhold from any compensation paid to the Participant by the Company) or by a combination of such means: (i) tendering a cash payment; (ii) authorizing the Company to withhold shares of Common Stock from the shares of Common Stock otherwise issuable to the participant as a result of the exercise or acquisition of Common Stock under the Stock Award; or (iii) delivering to the Company owned and unencumbered shares of Common Stock.

         (g)   Information Obligation. Prior to the Listing Date, to the extent required by Section 260.140.46 of Title 10 of the California Code of Regulations, the Company shall deliver financial statements to

11



Participants at least annually. This subsection 10(g) shall not apply to key Employees whose duties in connection with the Company assure them access to equivalent information.

         (h)   Repurchase Limitation. The terms of any repurchase option shall be specified in the Stock Award and may be either at Fair Market Value at the time of repurchase or at not less than the original purchase price. To the extent required by Section 260.140.41 and Section 260.140.42 of Title 10 of the California Code of Regulations at the time a Stock Award is made, any repurchase option contained in a Stock Award granted prior to the Listing Date to a person who is not an Officer, Director or Consultant shall be upon the terms described below:

11.   ADJUSTMENTS UPON CHANGES IN STOCK.

         (a)   Capitalization Adjustments. If any change is made in the Common Stock subject to the Plan, or subject to any Stock Award, without the receipt of consideration by the Company (through merger, consolidation, reorganization, recapitalization, reincorporation, stock dividend, dividend in property other than cash, stock split, liquidating dividend, combination of shares, exchange of shares, change in corporate structure or other transaction not involving the receipt of consideration by the Company), the Plan will be appropriately adjusted in the class(es) and maximum number of securities subject to the Plan pursuant to subsection 4(a) and the maximum number of securities subject to award to any person pursuant to subsection 5(c), and the outstanding Stock Awards will be appropriately adjusted in the class(es) and number of securities and price per share of Common Stock subject to such outstanding Stock Awards. The Board shall make such adjustments, and its determination shall be final, binding and conclusive. (The conversion of any convertible securities of the Company shall not be treated as a transaction "without receipt of consideration" by the Company.)

         (b)   Dissolution or Liquidation. In the event of a dissolution or liquidation of the Company, then all outstanding Stock Awards shall terminate immediately prior to such event.

12



         (c)   Asset Sale, Merger, Consolidation or Reverse Merger. In the event of (i) a sale, lease or other disposition of all or substantially all of the assets of the Company, (ii) a merger or consolidation in which the Company is not the surviving corporation or (iii) a reverse merger in which the Company is the surviving corporation but the shares of Common Stock outstanding immediately preceding the merger are converted by virtue of the merger into other property, whether in the form of securities, cash or otherwise (individually, a "Corporate Transaction"), then any surviving corporation or acquiring corporation shall assume any Stock Awards outstanding under the Plan or shall substitute similar stock awards (including an award to acquire the same consideration paid to the stockholders in the Corporate Transaction) for those outstanding under the Plan. In the event any surviving corporation or acquiring corporation refuses to assume such Stock Awards or to substitute similar stock awards for those outstanding under the Plan, then with respect to Stock Awards held by Participants whose Continuous Service has not terminated, the vesting of such Stock Awards (and, if applicable, the time during which such Stock Awards may be exercised) shall be accelerated in full, and the Stock Awards shall terminate if not exercised (if applicable) at or prior to the Corporate Transaction. With respect to any other Stock Awards outstanding under the Plan, such Stock Awards shall terminate if not exercised (if applicable) prior to the Corporate Transaction.

         (d)   Change in Control. If (i) a Change in Control occurs and (ii) at any time or from time to time during the period beginning one (1) month prior to the date of such Change in Control and ending eighteen (18) months after the date of such Change in Control the Continuous Service of a Participant terminates due to an involuntary termination (not including death or Disability) without Cause (defined below) or due to a Constructive Termination (defined below), then with respect to Stock Awards held by such Participant, the vesting of Stock Awards held by such Participant (and, if applicable, the time during which such Stock Awards may be exercised) shall be accelerated in full; provided, however, that to the extent such potential acceleration would cause a contemplated Change in Control transaction that would otherwise be eligible to be accounted for as a "pooling-of-interests" transaction to become ineligible for such accounting treatment under generally accepted accounting principles as determined in good faith by the Accountants prior to such Change of Control, such acceleration and/or exercisability shall not occur.

        For purposes of this Section 11, the following terms shall have the meanings set forth below:

        "Accountants" means the Company's independent accounting firm then engaged by the Company.

        "Cause" means the occurrence of any of the following (and only the following): (i) conviction of any felony involving fraud or act of dishonesty against the Company or its Affiliates; (ii) conduct which, based upon good faith and reasonable factual investigation and determination of the Company (or, if the terminated Participant is an Officer, of the Board), demonstrates gross unfitness to serve; or (iii) intentional, material violation by the terminated Participant of any statutory or fiduciary duty of the terminated Participant to the Company or its Affiliates. In addition, if the terminated Participant is not an Officer, Cause also shall include poor performance of the terminated Participant's services for the Company or its Affiliates as determined by the Company following (A) written notice to the Participant describing the nature of such deficiency and (b) the Participant's failure to cure such deficiency within thirty (30) days following receipt of the such written notice.

        "Change in Control" means: (i) a dissolution or liquidation of the Company; (ii) a sale of all or substantially all of the assets of the Company; (iii) a merger or consolidation in which the Company is not the surviving corporation and in which beneficial ownership of securities of the Company representing at least fifty percent (50%) of the combined voting power entitled to vote in the election of Directors has changed; (iv) a reverse merger in which the Company is the surviving corporation but the shares of Common Stock outstanding immediately preceding the merger are converted by virtue of the merger into other property, whether in the form of securities, cash or otherwise, and in which beneficial ownership of securities of the Company representing at least fifty percent (50%) of the

13



combined voting power entitled to vote in the election of Directors has changed; (v) an acquisition by any person, entity or group within the meaning of Section 13(d) or 14(d) of the Exchange Act, or any comparable successor provisions (excluding any employee benefit plan, or related trust, sponsored or maintained by the Company or subsidiary of the Company or other entity controlled by the Company) of the beneficial ownership (within the meaning of Rule 13d-3 promulgated under the Exchange Act, or comparable successor rule) of securities of the Company representing at least fifty percent (50%) of the combined voting power entitled to vote in the election of Directors; or (vi) in the event that the individuals who, as of the date of adoption of the Plan, are members of the Company's Board (the "Incumbent Board"), cease for any reason to constitute at least fifty percent (50%) of the Board. (If the election, or nomination for election by the Company's stockholders, of any new Director is approved by a vote of at least fifty percent (50%) of the Incumbent Board, such new Director shall be considered to be a member of the Incumbent Board in the future.)

        "Constructive Termination" means the occurrence of any of the following events or conditions: (i) (A) a change in the Participant's status, title, position or responsibilities (including reporting responsibilities) which represents an adverse change from the Participant's status, title, position or responsibilities as in effect at any time within ninety (90) days preceding the date of a Change in Control or at any time thereafter; (B) the assignment to the Participant of any duties or responsibilities which are inconsistent with the Participant's status, title, position or responsibilities as in effect at any time within ninety (90) days preceding the date of a Change in Control or at any time thereafter; or (C) any removal of the Participant from or failure to reappoint or reelect the Participant to any of such offices or positions (unless such removal or failure to reappoint or reelect is (1) in connection with the termination of the Participant's Continuous Service for Cause, (2) as a result of the Participant's Disability or death, or (3) by the Participant other than as a result of Constructive Termination); (ii) a reduction in the Participant's annual base compensation; or (iii) the Company's requiring the Participant to relocate to any place outside a fifty (50) mile radius of the Participant's current work site, excluding in any event reasonably required travel on the business of the Company or its Affiliates.

         (e)   Parachute Payments. In the event that any acceleration of vesting and/or exercisability of Stock Awards provided for in subsections 11(d) or 11(e) and benefits otherwise payable to a Participant (i) constitute "parachute payments" within the meaning of Section 280G of the Code, or any comparable successor provisions, and (ii) but for this subsection would be subject to the excise tax imposed by Section 4999 of the Code, or any comparable successor provisions (the "Excise Tax"), then such Participant's benefits hereunder shall be either

whichever of the foregoing amounts, when taking into account applicable federal, state, local and foreign income and employment taxes, the Excise Tax, and any other applicable taxes, results in the receipt by such Participant, on an after-tax basis, of the greatest amount of benefits, notwithstanding that all or some portion of such benefits may be taxable under the Excise Tax. Unless the Company and such Participant otherwise agree in writing, any determination required under this subsection shall be made in writing in good faith by the Accountants. In the event of a reduction of benefits hereunder, the Participant shall be given the choice of which benefits to reduce. For purposes of making the calculations required by this subsection, the Accountants may make reasonable assumptions and approximations concerning applicable taxes and may rely on reasonable, good faith interpretations concerning the application of the Code, and other applicable legal authority. The Company and the Participant shall furnish to the Accountants such information and documents as the Accountants may reasonably request in order to make a determination under this subsection. The Company shall bear all

14


costs the Accountants may reasonably incur in connection with any calculations contemplated by this subsection.

        If, notwithstanding any reduction described in this subsection, the IRS determines that the Participant is liable for the Excise Tax as a result of the receipt of the payment of benefits as described above, then the Participant shall be obligated to pay back to the Company, within thirty (30) days after a final IRS determination or in the event that the Participant challenges the final IRS determination, a final judicial determination, a portion of the payment equal to the "Repayment Amount." The Repayment Amount with respect to the payment of benefits shall be the smallest such amount, if any, as shall be required to be paid to the Company so that the Participant's net after-tax proceeds with respect to any payment of benefits (after taking into account the payment of the Excise Tax and all other applicable taxes imposed on such payment) shall be maximized. The Repayment Amount with respect to the payment of benefits shall be zero if a Repayment Amount of more than zero would not result in the Participant's net after-tax proceeds with respect to the payment of such benefits being maximized. If the Excise Tax is not eliminated pursuant to this paragraph, the Participant shall pay the Excise Tax.

        Notwithstanding any other provision of this subsection 11(f), if (i) there is a reduction in the payment of benefits as described in this subsection, (ii) the IRS later determines that the Participant is liable for the Excise Tax, the payment of which would result in the maximization of the Participant's net after-tax proceeds (calculated as if the Participant's benefits had not previously been reduced), and (iii) the Participant pays the Excise Tax, then the Company shall pay to the Participant those benefits which were reduced pursuant to this subsection contemporaneously or as soon as administratively possible after the Participant pays the Excise Tax so that the Participant's net after-tax proceeds with respect to the payment of benefits is maximized.

        If the Participant either (i) brings any action to enforce rights pursuant to this subsection 11(e), or (ii) defend any legal challenge to his or her rights hereunder, the Participant shall be entitled to recover attorneys' fees and costs incurred in connection with such action, regardless of the outcome of such action; provided, however, that in the event such action is commenced by the Participant, the court finds the claim was brought in good faith.

12.   AMENDMENT OF THE PLAN AND STOCK AWARDS.

         (a)   Amendment of Plan. The Board at any time, and from time to time, may amend the Plan. However, except as provided in Section 11 relating to adjustments upon changes in Common Stock, no amendment shall be effective unless approved by the stockholders of the Company to the extent stockholder approval is necessary to satisfy the requirements of Section 422 of the Code, Rule 16b-3 or any Nasdaq or securities exchange listing requirements.

         (b)   Stockholder Approval. The Board may, in its sole discretion, submit any other amendment to the Plan for stockholder approval, including, but not limited to, amendments to the Plan intended to satisfy the requirements of Section 162(m) of the Code and the regulations thereunder regarding the exclusion of performance-based compensation from the limit on corporate deductibility of compensation paid to certain executive officers.

         (c)   Contemplated Amendments. It is expressly contemplated that the Board may amend the Plan in any respect the Board deems necessary or advisable to provide eligible Employees with the maximum benefits provided or to be provided under the provisions of the Code and the regulations promulgated thereunder relating to Incentive Stock Options and/or to bring the Plan and/or Incentive Stock Options granted under it into compliance therewith.

15



         (d)   No Impairment of Rights. Rights under any Stock Award granted before amendment of the Plan shall not be impaired by any amendment of the Plan unless (i) the Company requests the consent of the Participant and (ii) the Participant consents in writing.

         (e)   Amendment of Stock Awards. The Board at any time, and from time to time, may amend the terms of any one or more Stock Awards; provided, however, that the rights under any Stock Award shall not be impaired by any such amendment unless (i) the Company requests the consent of the Participant and (ii) the Participant consents in writing.

13.   TERMINATION OR SUSPENSION OF THE PLAN.

         (a)   Plan Term. The Board may suspend or terminate the Plan at any time. Unless sooner terminated, the Plan shall terminate on the day before the tenth (10th) anniversary of the date the Plan is adopted by the Board or approved by the stockholders of the Company, whichever is earlier. No Stock Awards may be granted under the Plan while the Plan is suspended or after it is terminated.

         (b)   No Impairment of Rights. Suspension or termination of the Plan shall not impair rights and obligations under any Stock Award granted while the Plan is in effect except with the written consent of the Participant.

14.   EFFECTIVE DATE OF PLAN.

        The Plan shall become effective as determined by the Board, but no Stock Award shall be exercised (or, in the case of a stock bonus, shall be granted) unless and until the Plan has been approved by the stockholders of the Company, which approval shall be within twelve (12) months before or after the date the Plan is adopted by the Board.

15.   CHOICE OF LAW.

        The law of the State of California shall govern all questions concerning the construction, validity and interpretation of this Plan, without regard to such state's conflict of laws rules.

16



SENOMYX, INC.
1999 EQUITY INCENTIVE PLAN

STOCK OPTION AGREEMENT
(INCENTIVE STOCK OPTION OR NONSTATUTORY STOCK OPTION)

        Pursuant to your Stock Option Grant Notice ("Grant Notice") and this Stock Option Agreement, Senomyx, Inc. (the "Company") has granted you an option under its 1999 Equity Incentive Plan (the "Plan") to purchase the number of shares of the Company's Common Stock indicated in your Grant Notice at the exercise price indicated in your Grant Notice. Defined terms not explicitly defined in this Stock Option Agreement but defined in the Plan shall have the same definitions as in the Plan.

        The details of your option are as follows:

         1.     VESTING. Subject to the limitations contained herein, your option will vest as provided in your Grant Notice, provided that vesting will cease upon the termination of your Continuous Service.

         2.     NUMBER OF SHARES AND EXERCISE PRICE. The number of shares of Common Stock subject to your option and your exercise price per share referenced in your Grant Notice may be adjusted from time to time for Capitalization Adjustments, as provided in the Plan.

         3.     EXERCISE PRIOR TO VESTING ("EARLY EXERCISE"). If permitted in your Grant Notice (i.e., the "Exercise Schedule" indicates that "Early Exercise" of your option is permitted) and subject to the provisions of your option, you may elect at any time that is both (i) during the period of your Continuous Service and (ii) during the term of your option, to exercise all or part of your option, including the nonvested portion of your option; provided, however, that:

         4.     METHOD OF PAYMENT. Payment of the exercise price is due in full upon exercise of all or any part of your option. You may elect to make payment of the exercise price in cash or by check or in any other manner permitted by your Grant Notice , which may include one or more of the following:

1


         5.     WHOLE SHARES. You may exercise your option only for whole shares of Common Stock.

         6.     SECURITIES LAW COMPLIANCE. Notwithstanding anything to the contrary contained herein, you may not exercise your option unless the shares of Common Stock issuable upon such exercise are then registered under the Securities Act or, if such shares of Common Stock are not then so registered, the Company has determined that such exercise and issuance would be exempt from the registration requirements of the Securities Act. The exercise of your option must also comply with other applicable laws and regulations governing your option, and you may not exercise your option if the Company determines that such exercise would not be in material compliance with such laws and regulations.

         7.     TERM. You may not exercise your option before the commencement of its term or after its term expires. The term of your option commences on the Date of Grant and expires upon the earliest of the following:

2


        If your option is an incentive stock option, note that, to obtain the federal income tax advantages associated with an "incentive stock option," the Code requires that at all times beginning on the date of grant of your option and ending on the day three (3) months before the date of your option's exercise, you must be an employee of the Company or an Affiliate, except in the event of your death or Disability. The Company has provided for extended exercisability of your option under certain circumstances for your benefit but cannot guarantee that your option will necessarily be treated as an "incentive stock option" if you continue to provide services to the Company or an Affiliate as a Consultant or Director after your employment terminates or if you otherwise exercise your option more than three (3) months after the date your employment terminates.

         8.     EXERCISE.

3


         9.     TRANSFERABILITY. Your option is not transferable, except by will or by the laws of descent and distribution, and is exercisable during your life only by you. Notwithstanding the foregoing, by delivering written notice to the Company, in a form satisfactory to the Company, you may designate a third party who, in the event of your death, shall thereafter be entitled to exercise your option.

         10.   RIGHT OF FIRST REFUSAL. Shares of Common Stock that you acquire upon exercise of your option are subject to any right of first refusal that may be described in the Company's bylaws in effect at such time the Company elects to exercise its right. The Company's right of first refusal shall expire on the Listing Date.

         11.   RIGHT OF REPURCHASE. To the extent provided in the Company's bylaws as amended from time to time, the Company shall have the right to repurchase all or any part of the shares of Common Stock you acquire pursuant to the exercise of your option.

         12.   OPTION NOT A SERVICE CONTRACT. Your option is not an employment or service contract, and nothing in your option shall be deemed to create in any way whatsoever any obligation on your part to continue in the employ of the Company or an Affiliate, or of the Company or an Affiliate to continue your employment. In addition, nothing in your option shall obligate the Company or an Affiliate, their respective stockholders, Boards of Directors, Officers or Employees to continue any relationship that you might have as a Director or Consultant for the Company or an Affiliate.

         13.   WITHHOLDING OBLIGATIONS.

         14.   NOTICES. Any notices provided for in your option or the Plan shall be given in writing and shall be deemed effectively given upon receipt or, in the case of notices delivered by mail by the

4


Company to you, five (5) days after deposit in the United States mail, postage prepaid, addressed to you at the last address you provided to the Company.

         15.   GOVERNING PLAN DOCUMENT. Your option is subject to all the provisions of the Plan, the provisions of which are hereby made a part of your option, and is further subject to all interpretations, amendments, rules and regulations which may from time to time be promulgated and adopted pursuant to the Plan. In the event of any conflict between the provisions of your option and those of the Plan, the provisions of the Plan shall control.

5





QuickLinks -- Click here to rapidly navigate through this document

Exhibit 23.1


Consent of Ernst & Young LLP
Independent Registered Public Accounting Firm

        We consent to the references to our firm under the captions "Selected Financial Data" and "Experts" and to the use of our report dated March 23, 2004 (except paragraph 1 of Note 8, as to which the date is June 7, 2004 and paragraph 2 and 3 of Note 8, as to which the date is June 16, 2004) in Amendment No. 5 to the Registration Statement (Form S-1 No. 333-113998) and related Prospectus of Senomyx, Inc. for the registration of 6,900,000 shares of its common stock.

San Diego, California
June 15, 2004




QuickLinks

Consent of Ernst & Young LLP Independent Registered Public Accounting Firm