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TABLE OF CONTENTS
INDEX TO CONSOLIDATED FINANCIAL STATEMENTS

Table of Contents

As filed with the Securities and Exchange Commission on October 13, 2016.

Registration No. 333-213917


UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549



Amendment No. 1 to

FORM S-1
REGISTRATION STATEMENT
Under
The Securities Act of 1933



RA PHARMACEUTICALS, INC.
(Exact name of registrant as specified in its charter)



Delaware
(State or other jurisdiction of
incorporation or organization)
  2834
(Primary Standard Industrial
Classification Code Number)
  26-2908274
(I.R.S. Employer
Identification Number)



87 Cambridge Park Drive
Cambridge, MA 02140
(617) 401-4060
(Address, including zip code, and telephone number, including area code, of registrant's principal executive offices)



Douglas A. Treco, Ph.D.
President and Chief Executive Officer
87 Cambridge Park Drive
Cambridge, MA 02140
(617) 401-4060
(Name, address, including zip code, and telephone number, including area code, of agent for service)



Copies to:

Kingsley L. Taft, Esq.
Ryan S. Sansom, Esq.
Goodwin Procter LLP
100 Northern Avenue
Boston, Massachusetts 02210
(617) 570-1000

 

David C. Lubner
Executive Vice President
and Chief Financial Officer
Ra Pharmaceuticals, Inc.
87 Cambridge Park Drive
Cambridge, Massachusetts 02140
(617) 401-4060

 

Peter N. Handrinos, Esq.
Brandon J. Bortner, Esq.
Latham & Watkins LLP
John Hancock Tower
200 Clarendon Street
Boston, Massachusetts 02116
(617) 948-6000



Approximate date of commencement of proposed sale to the public:
As soon as practicable after the effective date of this registration statement.

           If any of the securities being registered on this Form are to be offered on a delayed or continuous basis pursuant to Rule 415 under the Securities Act of 1933, as amended, check the following box.     o

           If this Form is filed to register additional securities for an offering pursuant to Rule 462(b) under the Securities Act, please check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o

           If this Form is a post-effective amendment filed pursuant to Rule 462(c) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o

           If this form is a post-effective amendment filed pursuant to Rule 462(d) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.     o

           Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See the definitions of "large accelerated filer," "accelerated filer" and "smaller reporting company" in Rule 12b-2 of the Exchange Act.

Large Accelerated Filer  o   Accelerated Filer  o   Non-Accelerated Filer  ý
(Do not check if a
smaller reporting company)
  Smaller Reporting Company  o



            The registrant hereby amends this registration statement on such date or dates as may be necessary to delay its effective date until the registrant shall file a further amendment that specifically states that this registration statement shall thereafter become effective in accordance with Section 8(a) of the Securities Act of 1933, as amended, or until this registration statement shall become effective on such date as the Commission, acting pursuant to said Section 8(a), may determine.

   


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The information in this preliminary prospectus is not complete and may be changed. These securities may not be sold until the registration statement filed with the Securities and Exchange Commission is effective. This preliminary prospectus is not an offer to sell nor does it seek an offer to buy these securities in any jurisdiction where the offer or sale is not permitted.

SUBJECT TO COMPLETION, DATED October 13, 2016

             Shares

LOGO

Ra Pharmaceuticals, Inc.

Common Stock



        This is the initial public offering of shares of our common stock. Prior to this offering, there has been no public market for our common stock. We are selling                  shares of our common stock. The initial public offering price of our common stock is expected to be between $         and $         per share.

        We intend to apply to list our common stock on The NASDAQ Global Market under the symbol "RARX."

        The underwriters have an option to purchase a maximum of                  additional shares of common stock from us.

        We are an "emerging growth company" as that term is used in the Jumpstart Our Business Startups Act of 2012, or the JOBS Act, and, as such, we have elected to comply with certain reduced public company reporting requirements for this prospectus and future filings.

         Investing in our common stock involves risks. See "Risk Factors" on page 13.

 
  Price to
Public
  Underwriting
Discounts and
Commissions
  Proceeds to
Ra Pharmaceuticals, Inc.
 
Per Share   $                      $                      $                     
Total   $     $     $    

(1)
See "Underwriting" beginning on page 162 of this prospectus for additional information regarding underwriting compensation.

        Delivery of the shares of common stock will be made on or about                           , 2016.

        Neither the Securities and Exchange Commission nor any state securities commission has approved or disapproved of these securities or determined if this prospectus is truthful or complete. Any representation to the contrary is a criminal offense.

Credit Suisse   Jefferies   BMO Capital Markets

SunTrust Robinson Humphrey

   

The date of this prospectus is                           , 2016


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TABLE OF CONTENTS

 
  Page  

PROSPECTUS SUMMARY

    1  

RISK FACTORS

    13  

SPECIAL NOTE REGARDING FORWARD-LOOKING STATEMENTS

    64  

USE OF PROCEEDS

    66  

DIVIDEND POLICY

    67  

CAPITALIZATION

    68  

DILUTION

    70  

SELECTED CONSOLIDATED FINANCIAL DATA

    73  

MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

    75  

BUSINESS

    91  

MANAGEMENT

    130  

EXECUTIVE COMPENSATION

    137  

DIRECTOR COMPENSATION

    144  

CERTAIN RELATIONSHIPS AND RELATED PARTY TRANSACTIONS

    145  

PRINCIPAL STOCKHOLDERS

    148  

DESCRIPTION OF CAPITAL STOCK

    151  

SHARES ELIGIBLE FOR FUTURE SALE

    156  

MATERIAL U.S. FEDERAL INCOME TAX CONSIDERATIONS FOR NON-U.S. HOLDERS OF COMMON STOCK

    158  

UNDERWRITING

    162  

LEGAL MATTERS

    170  

EXPERTS

    170  

WHERE YOU CAN FIND MORE INFORMATION

    170  

INDEX TO FINANCIAL STATEMENTS

    F-1  

        You should rely only on the information contained in this prospectus or in any free writing prospectus we file with the Securities and Exchange Commission. Neither we nor the underwriters have authorized anyone to provide you with information other than that contained in this prospectus or any free writing prospectus prepared by or on behalf of us or to which we have referred you. We take no responsibility for, and can provide no assurance as to the reliability of, any other information that others may give you. We and the underwriters are offering to sell, and seeking offers to buy, common stock only in jurisdictions where offers and sales are permitted. The information contained in this prospectus is accurate only as of the date on the front cover page of this prospectus, or other earlier date stated in this prospectus, regardless of the time of delivery of this prospectus or of any sale of our common stock.



        The market data and certain other statistical information used throughout this prospectus are based on independent industry publications, governmental publications, reports by market research firms or other independent sources that we believe to be reliable sources. Industry publications and third-party research, surveys and studies generally indicate that their information has been obtained from sources believed to be reliable, although they do not guarantee the accuracy or completeness of such information. We are responsible for all of the disclosure contained in this prospectus, and we believe these industry publications and third-party research, surveys and studies are reliable. While we are not aware of any misstatements regarding any third-party information presented in this prospectus, their estimates, in particular, as they relate to projections, involve numerous assumptions, are subject to risks and uncertainties, and are subject to change based on various factors, including those discussed under the section entitled "Risk Factors" and elsewhere in this prospectus. Some data are also based on our good faith estimates.

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PROSPECTUS SUMMARY

         This summary highlights information contained elsewhere in this prospectus. Before investing in our common stock, you should carefully read this entire prospectus, including our consolidated financial statements and the related notes included elsewhere in this prospectus, "Risk Factors" and "Management's Discussion and Analysis of Financial Condition and Results of Operations." As used in this prospectus, unless the context otherwise requires, references to the "company," "we," "us" and "our" refer to Ra Pharmaceuticals, Inc. together with its subsidiaries.

Overview

        We are a clinical-stage biopharmaceutical company using our proprietary peptide chemistry platform to develop novel therapeutics for the treatment of serious diseases that are caused by excessive or uncontrolled activation of the complement system, a critical component of the immune system. Inappropriate activation of the complement system can quickly turn it from a beneficial defense system to an aggressor that plays a major role in immune and inflammatory diseases. We are developing our lead product candidate, RA101495, a convenient self-administered subcutaneous, or SC, injection, which is an injection into the tissue under the skin, for the treatment of paroxysmal nocturnal hemoglobinuria, or PNH. PNH is a rare, chronic, life-threatening, blood disorder where red blood cells are mistakenly attacked and destroyed by the complement system. We expect to initiate our Phase 2 clinical program for RA101495 in PNH patients in the first quarter of 2017 and release data in the second half of 2017. We are also developing RA101495, administered SC, to treat other debilitating complement-mediated diseases such as refractory generalized myasthenia gravis, or rMG, and lupus nephritis, or LN. We expect to initiate a Phase 2 clinical trial with RA101495 for rMG and a Phase 1b clinical trial in LN in the second half of 2017.

        RA101495 is a synthetic macrocyclic peptide, a ring-shaped chain of amino acids, which is a potent inhibitor of complement component 5, or C5. C5 plays a key role in the rupture and destruction of red blood cells, or hemolysis, associated with PNH. Inhibition of C5 is a clinically validated target for the control and suppression of complement-induced hemolysis in patients with PNH. Currently the only drug approved to treat PNH is eculizumab (Soliris), a humanized monoclonal antibody that acts as a C5 inhibitor and is administered biweekly by intravenous, or IV, infusion by healthcare professionals. Eculizumab had reported annual sales of $2.6 billion in 2015 for its two approved indications, PNH and aHUS. However, loss of hemolysis control, or breakthrough hemolysis, has been observed in patients treated with eculizumab, particularly towards the end of its two-week administration cycle. If approved for PNH, we believe RA101495 when self-administered SC on a more frequent basis, will provide sustained and improved disease control, which reduces the risk of breakthrough hemolysis, and offers PNH patients more convenience and flexibility compared with eculizumab.

        The complement system, which consists of approximately 30 interacting proteins, offers a target-rich opportunity for us to leverage our Extreme Diversity platform technology that was pioneered by Nobel Laureate Dr. Jack Szostak and allows us to inhibit certain uncontrolled complement pathway factors involved in complement-mediated diseases. Our platform allows us to produce synthetic macrocyclic peptides that combine the diversity and specificity of antibodies with the pharmacological properties of small molecules. The highly specific and stable peptide-like molecules generated are much smaller than monoclonal antibodies and other biologics, enabling more convenient routes of administration while still offering the opportunity to target protein-protein interactions, a type of molecular interaction that historically has been difficult to address with other small molecules. We believe our technology will allow us to pursue challenging targets for which only monoclonal antibodies have been developed. Our platform has been externally validated in a collaboration with Merck & Co., Inc., or Merck, when we successfully identified and delivered to Merck orally-available cyclic peptides for a non-complement cardiovascular target with a large market opportunity.

        We are developing a portfolio of drug candidates designed to treat a variety of complement-mediated diseases, including rare blood, neurologic, ophthalmologic, renal and inflammatory diseases. We also have preclinical programs targeting selective inhibition of other complement factors for diseases with no approved therapies, including Factor D for ophthalmologic and renal diseases, an oral, small molecule C5 inhibitor and C1s for certain autoimmune and central nervous system, or CNS, diseases.

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Our Pipeline

        The following table summarizes key information about our lead program and other pipeline programs. We hold worldwide commercialization rights to all of our product candidates, except for our non-complement cardiovascular target with a large market opportunity, which is subject to our collaboration with Merck.

Program
  Indication (1)   Description   Status

RA101495 for C5 Inhibition

  PNH (SC)   Phase 1 with single ascending dose and multiple dose in healthy volunteers   Completed Phase 1 second quarter 2016

     

Phase 2 with eculizumab-naïve patients, patients switched from eculizumab, and eculizumab inadequate responders

 

Planned Phase 2 commencing first quarter of 2017, and data by second half of 2017

 

rMG (SC)

 

Phase 2 with rMG patients

 

Program to be initiated with planned Phase 2 commencing second half of 2017, (2)

 

LN (SC)

 

Phase 1b with LN patients

 

Program to be initiated with planned Phase 1b commencing second half of 2017, (2)

Factor D Inhibition

 

Dry AMD/GA (intravitreal, or injection into the eye)

 

Preclinical program

 

Preclinical activities in process

 

Orphan renal diseases DDD and C3GN

 

Preclinical program

 

Preclinical activities in process

Oral C5 Inhibitor

 

PNH, rMG, LN and CNS Diseases

 

Preclinical program

 

Preclinical activities in process

C1s Inhibition

 

Autoimmune/CNS Diseases

 

Preclinical program

 

Discovery activities in process

Merck Collaboration (3)

 

Non-complement cardiovascular target with large market opportunity

 

Collaboration agreement

 

Lead oral peptide class selected June 2016; Merck's preclinical activities in process


(1)
In the table above, we refer to various indications as follows: PNH: paroxysmal nocturnal hemoglobinuria; rMG: refractory generalized myasthenia gravis; LN: lupus nephritis; AMD: age-related macular degeneration; GA: geographic atrophy; DDD: dense deposit disease; C3GN: C3 glomerulonephritis; and CNS: central nervous system.

(2)
We intend to leverage our work in PNH, including the chemistry, manufacturing and controls, or CMC, and preclinical data packages, to advance our programs for RA101495 for rMG and LN, which have not yet been initiated.

(3)
For additional information about our collaboration with Merck, see the section titled "Management's Discussion and Analysis of Financial Conditions and Results of Operations—Financial Overview."

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Our Programs

        Our lead product candidate, RA101495, is a potent synthetic macrocyclic peptide inhibitor of C5 formulated for daily SC administration that we are initially developing for the treatment of PNH. We expect to initiate our Phase 2 clinical program for RA101495 in PNH patients in the first quarter of 2017 and to release data in the second half of 2017.

        In addition to developing RA101495 for PNH, we are also developing RA101495, administered SC, to treat other serious complement-mediated diseases such as rMG and LN. In the second half of 2017, we expect to initiate a Phase 2 clinical trial with RA101495 for rMG and a Phase 1b clinical trial in LN. In addition to RA101495 and our collaboration with Merck, we have discovery and preclinical programs targeting selective inhibition of other complement factors, including Factor D administered by intravitreal injection for dry AMD, Factor D administered SC for DDD and C3GN, an oral, small molecule C5 inhibitor, and C1s inhibitors for certain autoimmune and CNS diseases.

RA101495 for Paroxysmal Nocturnal Hemoglobinuria

        PNH is a rare, chronic, debilitating, acquired blood disorder that is most frequently diagnosed in early adulthood and usually continues throughout the life of the patient. Some of the prominent symptoms of PNH include severe anemia, a condition that results from having too few healthy red blood cells, severe abdominal pain, severe headaches, back pain, excessive weakness and fatigue. If not treated, PNH results in the death of approximately 35% of affected individuals within five years of diagnosis, and 50% of affected individuals within 10 years of diagnosis, primarily due to the formation of life-threatening blood clots inside the blood vessels, or thrombosis. We estimate that there are approximately 16,000 PNH patients worldwide.

        Eculizumab, the only drug currently approved to treat PNH, had reported worldwide sales of approximately $2.6 billion in 2015 for its two approved indications. A third-party study estimated that, as of 2015, the cost per year for treatment with eculizumab was approximately $543,000 in adults. Eculizumab is administered intravenously by healthcare professionals at biweekly intervals. RA101495 is designed to bind C5 and reduce hemolysis in humans to similar levels as eculizumab. However, RA101495 binds to a site on C5 that is distinct from that of eculizumab, potentially conferring additional benefits, including the treatment of patients with R885H/C mutations, a population of PNH patients that does not respond to eculizumab. We are developing RA101495 as a SC formulation packaged as a convenient, self-administered product that can be administered in a small daily, or less frequent, such as weekly, dose. We believe this approach will facilitate sustained hemolysis suppression, greatly reducing the possibility of breakthrough hemolysis.

        In our recently completed Phase 1 randomized, double-blind, placebo controlled clinical trial of RA101495 in single-ascending dose cohorts and a multiple-dose cohort, in healthy volunteers, we observed the following in subjects treated with RA101495, as compared to those receiving placebo:

    highly predictable, dose dependent pharmacokinetics after single and multiple dose SC injections;

    maintenance of robust ex vivo hemolysis suppression and complement inhibition with daily SC dosing;

    near-complete suppression of ex vivo hemolysis and complement activity after a single SC dose; and

    an acceptable safety and tolerability profile with no serious adverse events reported.

        We expect to initiate our Phase 2 clinical program in PNH patients in the first quarter of 2017 and to release data from this program in the second half of 2017.

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RA101495 for Refractory Generalized Myasthenia Gravis

        Myasthenia gravis, or MG, is a rare complement-mediated autoimmune disease characterized by the production of autoantibodies targeting proteins that are critical for the normal transmission of electrical signals from nerves to muscles. Patients present with muscle weakness that characteristically becomes more severe with repeated use, and recovers with rest. Muscle weakness can be localized to specific muscles, such as those responsible for eye movements, but often progresses to more diffuse muscle weakness. Although the prognosis of MG is generally benign, in 10% to 15% of patients disease control either cannot be achieved with current therapies, or results in severe side effects of immunosuppressive therapy. This severe form of MG is known as rMG, and affects approximately 9,000 individuals in the United States. Current therapies focus on either boosting the acetylcholine receptor signal or suppressing the immune response, and none of these treatments targets the injury to the post-synaptic muscle endplate caused by complement attack.

        We believe that inhibiting terminal complement activity with our C5 inhibitor RA101495 may block complement-mediated damage to the motor endplate, thereby preserving responsiveness to signaling and potentially preventing muscle weakness. We plan to leverage our work in PNH to efficiently advance clinical development of RA101495 for rMG and intend to initiate a Phase 2 clinical trial of RA101495 in patients with rMG in the second half of 2017.

RA101495 for Lupus Nephritis

        Systemic lupus erythematosus, or SLE, is a serious, potentially lethal autoimmune disorder characterized by multi-organ involvement and a chronic relapsing clinical course. LN refers to the specific involvement of the kidney that is seen in approximately 20% of SLE patients. It is estimated that approximately 63,000 individuals in the United States have LN. Although immunosuppressive therapy has improved prognosis for patients with LN, approximately 10% to 15% of these patients will develop end-stage renal disease, requiring a kidney transplant or initiation of dialysis. These immunosuppressive treatments have significant toxicities associated with long-term use, and do not address complement-mediated tissue injury. As such, LN is associated with an approximately six-fold increase in the rate of mortality compared with the general population.

        We believe that RA101495, by binding C5, may prevent progression of kidney disease in LN by blocking complement-mediated damage to kidney cells. By inhibiting renal injury, we believe that RA101495 may reduce dependence on steroids and other immunosuppresive agents, thereby potentially improving the long-term outcome for patients. We plan to leverage our work in PNH to efficiently advance clinical development of RA101495 for LN and intend to initiate a Phase 1b clinical trial of RA101495 in LN in the second half of 2017.

Our Discovery Programs

        We also have preclinical programs targeting selective inhibition of other complement factors for diseases with no approved therapies. These include:

    a Factor D inhibitor program for intravitreal administration designed to prevent or reduce progression of geographic atrophy, the most advanced form of dry AMD, for which there is an estimated 1,000,000 patients in the United States, thereby potentially preventing further vision loss and preserving sight;

    a Factor D inhibitor program designed to block certain complement activity to prevent renal injury in order to treat C3 Glomerulonephritis and dense deposit disease, which cause compromised renal function and high blood pressure and for which there are combined approximately 1,000 patients in the United States;

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    an oral, small molecule C5 inhibitor designed to treat PNH, rMG and LN in pill form; and

    a C1s inhibitor program with potential applications in a range of autoimmune and CNS diseases.

Our Team

        We were founded by Dr. Douglas A. Treco, an experienced rare disease drug developer and our chief executive officer and president, and by Dr. Jack Szostak, a pioneer in the field of mRNA display from the Massachusetts General Hospital, an affiliate of Harvard University, and Howard Hughes Medical Institute. Dr. Szostak currently serves as the chairman of our scientific advisory board and a consultant to us. Our management team consists of drug discovery, development and commercialization experts with experience in translating scientific discoveries into innovative approved products for rare diseases, including Replagal for Fabry disease, Elaprase for Hunter syndrome, and Vpriv for Gaucher's disease, as well as Dynepo for chronic kidney disease, and immunology products, including Rituxan and Actemra.

        Our progress has been supported by several leading biopharmaceutical investors, including New Enterprise Associates, Novartis Bioventures, Morgenthaler Venture Partners, RA Capital, Novo A/S, Amgen Ventures, Lightstone Ventures, Rock Springs Capital, and Limulus Venture Partners.

Our Strategy

        Our goal is to become a leading biopharmaceutical company that transforms the lives of patients with serious complement-mediated diseases by combining our expertise in complement with our leadership in macrocyclic peptide technology. To achieve this goal, we are executing on the following strategy:

    Advance our lead program, RA101495 subcutaneous, through clinical development.   In our Phase 2 clinical program, we intend to establish clinical proof-of-concept by using convenient SC self-administration in PNH patients. We believe RA101495 will provide improved control of hemolysis, reduce the risk of breakthrough hemolysis, and offer PNH patients greater convenience and flexibility. We expect to initiate our Phase 2 clinical program in PNH patients in the first quarter of 2017 and to release data in the second half of 2017.

    Efficiently advance clinical development of RA101495 for other serious complement-mediated diseases, such as rMG and LN.   We intend to leverage our work in PNH, including the CMC and preclinical data packages, to advance RA101495 for other complement-mediated diseases, initially including rMG and LN. There is strong mechanistic and clinical evidence for a beneficial effect of C5 inhibition in patients with rMG, and in LN. We expect to initiate a Phase 2 clinical trial with RA101495 for rMG and a Phase 1b clinical trial in LN in the second half of 2017.

    If approved, commercialize RA101495 globally either independently or by collaborating selectively in certain geographies.   We have worldwide development and commercialization rights to RA101495. We intend to independently pursue the approval and commercialization of RA101495 in PNH patients in the United States and Europe. Outside of the United States and Europe, we may pursue the approval and commercialization of RA101495 for PNH patients either independently or in collaboration with others. We intend to develop and commercialize RA101495 for other indications independently or through collaborations with third parties.

    Pursue clinical development of our pipeline programs targeting additional serious complement-mediated diseases with limited treatment options.   In addition to developing RA101495 for PNH, rMG and LN, we are developing our pipeline programs to selectively target inhibition of other complement factors, including Factor D administered by intravitreal injection, a clinically validated approach for dry AMD, Factor D administered SC for orphan renal diseases, DDD and C3GN, and C1s inhibitors for certain autoimmune and CNS diseases. We are also

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      developing an oral small molecule C5 inhibitor as a follow-on product. We plan to advance our pipeline programs on our own or by opportunistically collaborating with third parties. In addition to our current pipeline, we also believe the target-rich complement system offers us the opportunity to discover other innovative drug candidates.

    Enhance our leadership position in the field of macrocyclic peptide technology through continued development of our Extreme Diversity platform.   We have validated our Extreme Diversity platform by successfully identifying and delivering orally-available cyclic peptides for a non-complement cardiovascular target with a large market opportunity in a collaboration with Merck. We intend to enhance our proprietary drug discovery capabilities by expanding the chemical diversity of our peptide libraries to identify molecules with more favorable drug-like properties. We are also using our novel macrocyclic peptides to guide the development of next-generation, orally-available small molecule drugs that bind to and inhibit targets in similar ways as the original peptides.

Our Extreme Diversity Platform

        RA101495 and our pipeline of peptide product candidates were discovered using our Extreme Diversity platform, our proprietary technology that allows us to rapidly and efficiently discover cyclic peptides comprised of natural and non-natural amino acids, with the advantages set forth below.

    High affinity and potency.   Our peptides are cyclic, and therefore are conformationally rigid, thereby "locking" the molecule in the conformation in which it binds optimally to its target and leading to affinity and potency similar to antibodies.

    High specificity.   Our peptides are larger than most drugs taken in pill form, allowing them to have more contact points when bound to their targets, thus affording similar specificity as antibodies.

    Novel mechanisms of interaction.   The use of non-natural amino acids with new chemical functionalities expands the manner in which peptides can interact with target proteins, potentially enabling new mechanisms to modulate protein function in the body.

    High stability.   The backbone modification and relatively rigid, cyclic structure of our peptides are designed to reduce degradation. As a result, we believe our peptides will have higher stability in the body than natural peptides. Further, they will not denature or unfold over time, and have higher stability than antibodies and biologics, potentially allowing for room temperature storage over the entire distribution chain.

    Improved bioavailability.   The relatively small size of our peptides allows them to enter the circulation readily when administered by a variety of potential routes, including subcutaneous injection or oral administration, an advantage over many monoclonal antibody and biologic therapies which require intravenous infusion.

    Half-life modification.   As synthetic products, we can readily modify our cyclic peptides with chemical groups that modify the circulating half-life in the body, including lipids, carbohydrates, and polymers such as polyethylene glycol, providing the potential to optimize dosing by fine-tuning the pharmacokinetic properties.

    Reduced safety risks.   Unlike antibodies and biologics, our peptides are completely synthetic, eliminating the potential for viral and cellular protein contamination, risks to therapeutics produced in mammalian cells, and potentially allowing for administration to patients with hypersensitivity to products produced using mammalian cells.

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    Favorable manufacturing processes and costs.   As synthetic products, our peptides do not need complex fermentation facilities, allowing their production to be easily sourced from multiple vendors at lower costs than mammalian cell products.

Risks Associated with Our Business

        Our business is subject to a number of risks of which you should be aware before making an investment decision. These risks are discussed more fully in the "Risk Factors" section of this prospectus immediately following this prospectus summary. These risks include the following.

    We have a history of significant operating losses, and expect to incur significant and increasing losses for the foreseeable future, and may never achieve or maintain profitability and investors may lose their entire investment.

    Our independent registered public accounting firm has indicated that our financial condition raises substantial doubt as to our ability to continue as a going concern.

    we will need substantial additional funding, and if we are unable to raise capital when needed, we could be forced to delay, reduce or eliminate our product discovery and product development programs or commercialization efforts;

    we are at a very early stage in our development efforts, our approach is unproven and we may not be able to successfully develop and commercialize any product and discovery candidates;

    our business depends heavily upon the success of RA101495, which is still under development. If we are unable to obtain regulatory approval for or successfully commercialize RA101495, our business will be materially harmed;

    if clinical trials of our product candidates fail to satisfactorily demonstrate safety and efficacy to the FDA and other regulators, we, or any future collaborators, may incur additional costs or experience delays in completing, or ultimately be unable to complete, the development and commercialization of these product candidates;

    even if we complete the necessary preclinical studies and clinical trials, the marketing approval process is expensive, time consuming and uncertain and may prevent us or any future collaborators from obtaining approvals for the commercialization of some or all of our product candidates;

    we rely on third parties to conduct our clinical trials and to manufacture and distribute our product candidates for our clinical trials. If these third parties do not perform satisfactorily, our development or commercialization efforts could be delayed or impaired;

    we expect to seek to establish collaborations and, if we are not able to establish them on commercially reasonable terms, we may have to alter our development and commercialization plans; and

    if we fail to comply with our obligations under our existing and any future intellectual property licenses with third parties, we could lose license rights that are important to our business.

Corporate History

        We were incorporated under the laws of the State of Delaware in June 2008 under the name Ra Pharmaceuticals, Inc. Our executive offices are located at 87 Cambridge Park Drive, Cambridge, Massachusetts 02140, and our telephone number is (617) 401-4060. Our website address is www.rapharma.com. We do not incorporate the information on or accessible through our website into this prospectus, and you should not consider any information on, or that can be accessed through, our website as part of this prospectus.

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        We own various U.S. federal trademark applications and unregistered trademarks, including our company name, Ra Pharmaceuticals, Ra Pharma and our logo. All other trademarks or trade names referred to in this prospectus are the property of their respective owners. Solely for convenience, the trademarks and trade names in this prospectus are referred to without the symbols ® and ™, but such references should not be construed as any indicator that their respective owners will not assert, to the fullest extent under applicable law, their rights thereto.

Implications of Being an Emerging Growth Company

        We qualify as an "emerging growth company" as defined in the Jumpstart Our Business Startups Act of 2012, as amended, or the JOBS Act. As an emerging growth company, we may take advantage of specified reduced disclosure and other requirements that are otherwise applicable generally to public companies. These provisions include:

    only two years of audited financial statements in addition to any required unaudited interim financial statements with correspondingly reduced "Management's Discussion and Analysis of Financial Condition and Results of Operations" disclosure;

    reduced disclosure about our executive compensation arrangements;

    no non-binding advisory votes on executive compensation or golden parachute arrangements;

    exemption from the auditor attestation requirement in the assessment of our internal control over financial reporting; and

    an exemption from new or revised financial accounting standards until they would apply to private companies and from compliance with any new requirements adopted by the Public Company Accounting Oversight Board requiring mandatory audit firm rotation.

        We may take advantage of these exemptions for up to five years or such earlier time that we are no longer an emerging growth company. We would cease to be an emerging growth company on the date that is the earliest of (i) the last day of the fiscal year in which we have total annual gross revenues of $1 billion or more; (ii) the last day of our fiscal year following the fifth anniversary of the date of the completion of this offering; (iii) the date on which we have issued more than $1 billion in nonconvertible debt during the previous three years; or (iv) the date on which we are deemed to be a large accelerated filer under the rules of the Securities and Exchange Commission, or SEC. We may choose to take advantage of some but not all of these exemptions. We have taken advantage of reduced reporting requirements in this prospectus. Accordingly, the information contained herein may be different from the information you receive from other public companies in which you hold stock. We have irrevocably elected to "opt out" of the exemption for the delayed adoption of certain accounting standards and, therefore, will be subject to the same new or revised accounting standards as other public companies that are not emerging growth companies.

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THE OFFERING

Common stock offered in this offering

                  shares

Common stock to be outstanding immediately after this offering

 


                 shares (                shares if the underwriters exercise their option to purchase additional shares in full)

Underwriters' option to purchase additional shares

 

We have granted a 30-day option to the underwriters to purchase up to an aggregate of                additional shares of common stock from us at the public offering price, less underwriting discounts and commissions on the same terms as set forth in this prospectus.

Use of proceeds

 

We estimate that we will receive net proceeds from the sale of shares of our common stock in this offering of approximately $                million, or $                million if the underwriters exercise their option to purchase additional shares in full, assuming an initial public offering price of $                per share, the midpoint of the price range set forth on the cover page of this prospectus, and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us. We intend to use the net proceeds from this offering, together with our existing cash and cash equivalents, to fund development of RA101495 through Phase 2 clinical trials in PNH patients and rMG patients, and through our Phase 1b clinical trial in LN patients, advance our pipeline programs and for working capital and other general corporate purposes. For a more complete description of our intended use of the proceeds from this offering, see "Use of Proceeds."

Risk factors

 

You should carefully read the "Risk Factors" section of this prospectus for a discussion of factors that you should consider before deciding to invest in our common stock.

Proposed NASDAQ Global Market symbol

 

"RARX"

        The number of shares of our common stock to be outstanding after this offering is based on 3,883,492 shares of our common stock outstanding as of August 16, 2016, and gives effect to (i) the conversion of all of our outstanding preferred stock into 95,367,647 shares of our common stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into                        shares of common stock, at an assumed exercise price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, in each case upon the closing of this offering, and excludes:

    14,783,897 shares of common stock issuable upon the exercise of stock options outstanding as of August 16, 2016 under our 2010 Stock Option and Grant Plan, or the 2010 Plan, at a weighted average exercise price of $0.56 per share;

    an additional 867,181 shares of common stock available for future issuance under our 2010 Plan as of August 16, 2016;

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    an additional                shares of common stock that will be made available for future issuance under our 2016 Stock Option and Incentive Plan upon the effectiveness of the registration statement of which this prospectus forms a part; and

    an additional                shares of common stock that will be made available for future issuance under our 2016 Employee Stock Purchase Plan upon the effectiveness of the registration statement of which this prospectus forms a part.

        Unless otherwise indicated, all information in this prospectus reflects or assumes the following:

    the filing of our amended and restated certificate of incorporation and the effectiveness of our amended and restated by-laws upon the closing of this offering;

    the conversion of all of our outstanding shares of preferred stock into an aggregate of 95,367,647 shares of common stock upon the closing of this offering;

    the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into                 shares of common stock, at an assumed exercise price of $                per share, which is the midpoint of the price range set forth on the cover of this prospectus, upon the closing of this offering;

    no exercise of outstanding options after August 16, 2016;

    a 1-for-            reverse split of our common stock effected on            ; and

    no exercise by the underwriters of their option to purchase up to                additional shares of common stock in this offering.

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SUMMARY CONSOLIDATED FINANCIAL DATA

        The following tables summarize our historical consolidated financial data as of, and for the periods ended on, the dates indicated. We have derived the summary consolidated statement of operations data for the years ended December 31, 2014 and 2015 from our audited consolidated financial statements included elsewhere in this prospectus. We have derived the summary consolidated statement of operations data for the six months ended June 30, 2015 and 2016 and balance sheet data as of June 30, 2016 from our unaudited consolidated financial statements included elsewhere in this prospectus. The unaudited consolidated financial statements have been prepared on a basis consistent with our audited consolidated financial statements included in this prospectus and, in the opinion of management, reflect all adjustments, consisting only of normal recurring adjustments, necessary to fairly state our financial position as of June 30, 2016 and results of operations for the six months ended June 30, 2015 and 2016. Our historical results are not necessarily indicative of the results that may be expected in the future, and our interim period results are not necessarily indicative of results to be expected for a full year or any other interim period. The summary consolidated financial data set forth below should be read together with the consolidated financial statements and the related notes to those statements, as well as the sections of this prospectus entitled "Selected Consolidated Financial Data" and "Management's Discussion and Analysis of Financial Condition and Results of Operations."

 
  Year Ended December 31,   Six Months Ended June 30,  
 
  2014   2015   2015   2016  
 
  (In thousands, except share and per share data)
 

Consolidated Statement of Operations Data:

                         

Revenue

  $ 4,830   $ 4,094   $ 2,177   $ 4,928  

Operating expenses:

                         

Research & development

    10,016     15,217     6,566     11,462  

General & administrative

    1,924     2,233     1,010     2,376  

Total operating expenses               

    11,940     17,450     7,576     13,838  

Loss from operations

    (7,110 )   (13,356 )   (5,399 )   (8,910 )

Other income (expense), net

    1,607     (606 )   (49 )   (952 )

Loss from operations before benefit from income taxes

    (5,503 )   (13,962 )   (5,448 )   (9,862 )

Benefit from income taxes

    27     19          

Net loss

    (5,476 )   (13,943 )   (5,448 )   (9,862 )

Gain on extinguishment of redeemable convertible preferred shares

        1,673          

Net loss attributable to common shareholders

  $ (5,476 ) $ (12,270 ) $ (5,448 ) $ (9,862 )

Net loss per share attributable to common stockholders—basic and diluted (1)

  $ (1.78 ) $ (3.53 ) $ (1.61 ) $ (2.62 )

Weighted-average common shares used in net loss per share attributable to common stockholders—basic and diluted (1)

    3,077,293     3,479,651     3,377,647     3,768,332  

Pro forma net loss per share attributable to common stockholders—basic and diluted (unaudited) (1)

        $ (0.20 )       $ (0.12 )

Pro forma weighted-average common shares used in net loss per share attributable to common stockholders—basic and diluted (unaudited) (1)

          54,043,850           73,543,051  

(1)
See Note 2 to our notes to consolidated financial statements included elsewhere in this prospectus for an explanation of the method used to calculate the historical and pro forma basic and diluted net loss per common share and the number of shares used in the computation of the per share amounts.

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  As of June 30, 2016  
 
  Actual   Pro Forma (1)   Pro Forma
As Adjusted (2)(4)
 
 
  (In thousands)
 

Consolidated Balance Sheet Data:

                   

Cash and cash equivalents

  $ 40,246   $ 40,246   $    

Working capital (3)

    34,975     34,975        

Total assets

    49,312     49,245        

Redeemable convertible preferred stock

    86,484            

Accumulated deficit

    (49,762 )   (49,762 )      

Total stockholders' (deficit) equity

    (46,747 )   39,670        

(1)
Pro forma amounts give effect to (i) the automatic conversion of all of our outstanding shares of preferred stock into an aggregate of 95,367,647 shares of common stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into                shares of common stock, at an assumed exercise price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, in each case upon the closing of this offering.

(2)
Pro forma as adjusted amounts reflect pro forma adjustments described in footnote (1) as well as the sale of                shares of our common stock in this offering at the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, after deducting the estimated underwriting discounts and commissions and estimated offering expenses payable by us.

(3)
We define working capital as current assets less current liabilities.

(4)
A $1.00 increase (decrease) in the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover of this prospectus, would increase (decrease) the pro forma as adjusted amount of each of cash and cash equivalents, working capital, total assets and total stockholders' equity by approximately $             million, assuming that the number of shares offered by us, as set forth on the cover of this prospectus, remains the same and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us. Similarly, each increase (decrease) of 1.0 million shares offered by us in this offering would increase (decrease) the net proceeds to us from this offering by approximately $             million, assuming the assumed initial public offering price remains the same and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us.

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RISK FACTORS

         Investing in our common stock involves a high degree of risk. You should carefully consider the following risks and uncertainties, together with all other information in this prospectus, including our consolidated financial statements and related notes and "Management's Discussion and Analysis of Results of Operations and Financial Condition," before investing in our common stock. Any of the risk factors we describe below could adversely affect our business, financial condition or results of operations. The market price of our common stock could decline if one or more of these risks or uncertainties actually occur, causing you to lose all or part of the money you paid to buy our common stock. Additional risks that we currently do not know about or that we currently believe to be immaterial may also impair our business. Certain statements below are forward-looking statements. See "Special Note Regarding Forward-Looking Statements" in this prospectus.

Risks Related to Our Financial Position and Need for Additional Capital

We have a history of significant operating losses and expect to incur significant and increasing losses for the foreseeable future; we may never achieve or maintain profitability and investors may lose their entire investment.

        We do not expect to generate revenue or profitability that is necessary to finance our operations in the short term. We incurred net losses of $5.5 million and $13.9 million for the years ended December 31, 2014 and 2015, respectively, and $5.4 and $9.9 million for the six months ended June 30, 2015 and 2016, respectively. In addition, our accumulated deficit as of December 31, 2014 and 2015 was $26.0 million and $39.9 million, respectively, and $49.8 million as of June 30, 2016. To date, we have not commercialized any products or generated any revenues from the sale of products, and absent the realization of sufficient revenues from product sales, we may never attain profitability in the future. We have devoted substantially all of our financial resources and efforts to research and development, including preclinical studies and our clinical trials. Our net losses may fluctuate significantly from quarter to quarter and year to year. Net losses and negative cash flows have had, and will continue to have, an adverse effect on our stockholders' equity and working capital.

        We anticipate that our expenses will increase substantially if and as we:

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        Our ability to become and remain profitable depends on our ability to generate revenue. We do not expect to generate significant revenue unless and until we are, or any future collaborator is, able to obtain marketing approval for, and successfully commercialize, one or more of our product candidates. Successful commercialization will require achievement of key milestones, including completing clinical trials of our product candidates, obtaining marketing approval for these product candidates, manufacturing, marketing and selling those products for which we, or any of our future collaborators, may obtain marketing approval, satisfying any post-marketing requirements and obtaining reimbursement for our products from private insurance or government payors. Because of the uncertainties and risks associated with these activities, we are unable to accurately predict the timing and amount of revenues, and if or when we might achieve profitability. We and any future collaborators may never succeed in these activities and, even if we do, or any future collaborators do, we may never generate revenues that are large enough for us to achieve profitability. Even if we do achieve profitability, we may not be able to sustain or increase profitability on a quarterly or annual basis.

        Because our only source of revenue to date, our research collaboration with Merck & Co., or Merck, has reached the end of its research term and identified a product candidate, to the extent we continue to receive revenue from this collaboration, we must rely on Merck's efforts to develop and commercialize that target candidate, which we do not control.

        Our failure to become and remain profitable would depress the market price of our common stock and could impair our ability to raise capital, expand our business, diversify our product offerings or continue our operations. If we continue to suffer losses as we have in the past, investors may not receive any return on their investment and may lose their entire investment.

Our independent registered public accounting firm has indicated that our financial condition raises substantial doubt as to our ability to continue as a going concern.

        Our financial statements have been prepared assuming that we will continue to operate as a going concern, which contemplates the realization of assets and the satisfaction of liabilities in the normal course of business. However, our independent registered public accounting firm has included in its audit opinion for the year ended December 31, 2015 a statement that there is substantial doubt as to our ability to continue as a going concern as a result of our recurring losses and financial condition on December 31, 2015. Our ability to continue as a going concern will require us to generate positive cash flow from operations, obtain additional financing, enter into strategic alliances and/or sell assets. The reaction of investors to the inclusion of a going concern statement by our auditors, our current lack of cash resources and our potential inability to continue as a going concern may materially adversely affect our share price and our ability to raise new capital or enter into strategic alliances. If we become unable to continue as a going concern, we may have to liquidate our assets and the values we receive for our assets in liquidation or dissolution could be significantly lower than the values reflected in our financial statements.

We will need substantial additional funding, and if we are unable to raise capital when needed, we could be forced to delay, reduce or eliminate our product discovery and development programs or commercialization efforts.

        Developing pharmaceutical products, including conducting preclinical studies and clinical trials, is a very time-consuming, expensive and uncertain process that takes years to complete. For example, in the years ended December 31, 2014 and December 31, 2015, we used $7.6 million and $12.0 million, respectively, in net cash for our operating activities, and in the six months ended June 30, 2016, we used $5.3 million in net cash for our operating activities, substantially all of which related to research and development activities. We expect our expenses to increase in connection with our ongoing

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activities, particularly as we initiate new clinical trials of, initiate new research and preclinical development efforts for and seek marketing approval for, our current product candidates or any product candidates that we acquire, if any. In addition, if we obtain marketing approval for any of our product candidates, we may incur significant commercialization expenses related to product sales, marketing, manufacturing and distribution to the extent that such sales, marketing, manufacturing and distribution are not the responsibility of a future collaborator. Furthermore, following the completion of this offering, we expect to incur significant additional costs associated with operating as a public company. Accordingly, we will need to obtain substantial additional funding in connection with our continuing operations. If we are unable to raise capital when needed or on attractive terms, we may be forced to delay, reduce or eliminate our research and development programs or any future commercialization efforts.

        We plan to use the net proceeds of this offering primarily to fund clinical development of RA101495 and our planned early development of other product candidates in our pipeline, and for working capital and other general corporate purposes. We will be required to expend significant funds in order to advance the development of RA101495, as well as other product candidates we may seek to develop. In addition, while we may seek one or more collaborators for future development of our product candidates for one or more indications, we may not be able to enter into a collaboration for any of our product candidates for such indications on suitable terms, on a timely basis or at all. In any event, the net proceeds of this offering and our existing cash and cash equivalents will not be sufficient to fund all of the efforts that we plan to undertake or to fund the completion of development of any of our product candidates. Accordingly, we will be required to obtain further funding through public or private equity offerings, debt financings, collaborations and licensing arrangements or other sources. We do not have any committed external source of funds. Adequate additional financing may not be available to us on acceptable terms, or at all. Our failure to raise capital as and when needed would have a negative impact on our financial condition and our ability to pursue our business strategy.

        We believe that the net proceeds from this offering, together with our existing cash and cash equivalents as of June 30, 2016, will enable us to fund our operating expenses and capital expenditure requirements through                . Our estimate may prove to be wrong, and we could use our available capital resources sooner than we currently expect. Further, changing circumstances, some of which may be beyond our control, could cause us to consume capital significantly faster than we currently anticipate, and we may need to seek additional funds sooner than planned. Our future funding requirements, both short-term and long-term, will depend on many factors, including:

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Raising additional capital may cause dilution to our stockholders, including purchasers of common stock in this offering, restrict our operations or require us to relinquish rights to our technologies or product candidates.

        We expect our expenses to increase in connection with our planned operations. To the extent that we raise additional capital through the sale of common stock, convertible securities or other equity securities, your ownership interest may be diluted, and the terms of these securities could include liquidation or other preferences and anti-dilution protections that could adversely affect your rights as a common stockholder. In addition, debt financing, if available, may result in fixed payment obligations and may involve agreements that include restrictive covenants that limit our ability to take specific actions, such as incurring additional debt, making capital expenditures, creating liens, redeeming stock or declaring dividends, that could adversely impact our ability to conduct our business. In addition, securing financing could require a substantial amount of time and attention from our management and may divert a disproportionate amount of their attention away from day-to-day activities, which may adversely affect our management's ability to oversee the development of our product candidates.

        If we raise additional funds through collaborations or marketing, distribution or licensing arrangements with third parties, we may have to relinquish valuable rights to our technologies, future revenue streams or product candidates or grant licenses on terms that may not be favorable to us. If we are unable to raise additional funds when needed, we may be required to delay, limit, reduce or terminate our product development or future commercialization efforts or grant rights to develop and market product candidates that we would otherwise prefer to develop and market ourselves.

We have a limited operating history and no history of commercializing pharmaceutical products, which may make it difficult to evaluate the prospects for our future viability.

        We commenced operations in 2008. Our operations to date have been limited to financing and staffing our company, developing our technology and conducting preclinical research and early-stage clinical trials for our product candidates. We have not yet demonstrated an ability to successfully conduct late-stage clinical trials, obtain marketing approvals, manufacture a commercial-scale product, or arrange for a third party to do so on our behalf, or conduct sales and marketing activities necessary for successful product commercialization. Accordingly, you should consider our prospects in light of the costs, uncertainties, delays and difficulties frequently encountered by companies in the early stages of development, especially clinical-stage biopharmaceutical companies such as ours. Any predictions you make about our future success or viability may not be as accurate as they could be if we had a longer operating history or a history of successfully developing and commercializing pharmaceutical products.

        We may encounter unforeseen expenses, difficulties, complications, delays and other known or unknown factors in achieving our business objectives. We will eventually need to transition from a company with a development focus to a company capable of supporting commercial activities. We may not be successful in such a transition.

        We expect our financial condition and operating results to continue to fluctuate significantly from quarter to quarter and year to year due to a variety of factors, many of which are beyond our control. Accordingly, you should not rely upon the results of any quarterly or annual periods as indications of future operating performance.

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Risks Related to the Discovery, Development and Commercialization of Our Product Candidates

We are at a very early stage in our development efforts, our approach is unproven and we may not be able to successfully develop and commercialize any product candidates.

        RA101495 is a novel therapeutic compound and its potential therapeutic benefit is unproven. There is only one approved therapy inhibiting C5. Our product candidates may not demonstrate in patients any or all of the pharmacological benefits we believe they may possess or compare favorably to the approved C5 inhibitor therapy. We have not yet succeeded and may never succeed in demonstrating efficacy and safety for these or any other product candidates in clinical trials or in obtaining marketing approval thereafter. For example, although we have evaluated RA101495 in preclinical studies and have evaluated RA101495 in an early-stage clinical trial, we have not yet advanced RA101495 into Phase 2 or Phase 3 clinical development, nor have we obtained regulatory approval to sell any product based on our therapeutic approaches.

        Our development plans include exploring the potential of complement inhibition, including C5 inhibition, to treat complement-mediated diseases for which complement inhibition has not been fully validated. This is an unproven approach to the treatment of diseases such as refractory generalized myasthenia gravis, or rMG, and lupus nephritis, or LN. The scientific evidence to support the feasibility of developing products to treat such disease by C5 inhibition is both preliminary and limited. Accordingly, our focus on treating these diseases may not result in the discovery and development of commercially viable products.

        If we are unsuccessful in our development efforts, we may not be able to advance the development of our product candidates, commercialize products, raise capital, expand our business or continue our operations.

Our business depends heavily upon the success of RA101495, which is still under development. If we are unable to obtain regulatory approval for or successfully commercialize RA101495, our business will be materially harmed.

        We currently have no products approved for sale and are investing a significant portion of our efforts and financial resources in the development of our lead product candidate, RA101495. Successful continued development and ultimate regulatory approval of RA101495 for paroxysmal nocturnal hemoglobinuria, or PNH, and, in the future, a range of debilitating autoimmune diseases including rMG and LN is critical to the future success of our business. We will need to raise sufficient funds for, and successfully enroll and complete, our clinical development program for RA101495 in PNH. The future regulatory and commercial success of this product candidate is subject to a number of risks, including the following:

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        Of the large number of drugs in development in the pharmaceutical industry, only a small percentage result in the submission of a new drug application, or NDA, to the FDA and even fewer are approved for commercialization. Furthermore, even if we do receive regulatory approval to market RA101495, any such approval may be subject to limitations on the indicated uses or patient populations for which we may market the product. Accordingly, even if we are able to obtain the requisite financing to continue to fund our development programs, we cannot assure you that RA101495 will be successfully developed or commercialized. If we or any of our future development partners are unable to develop, or obtain regulatory approval for, or, if approved, successfully commercialize RA101495, we may not be able to generate sufficient revenue to continue our business.

We face substantial competition, which may result in others discovering, developing or commercializing products before or more successfully than we do, and reducing or eliminating our commercial opportunity.

        The development and commercialization of new products is highly competitive. We expect that we, and any future collaborators, will face significant competition from major pharmaceutical companies, specialty pharmaceutical companies and biotechnology companies worldwide with respect to any of our product candidates that we, or any future collaborators, may seek to develop or commercialize in the future, including from drugs that act through the complement system and drugs that use different approaches. The principal competitor for our program in PNH is eculizumab, a C5 inhibitor, which is marketed as Soliris by Alexion Pharmaceuticals and is the only drug approved for the treatment of PNH. Alexion Pharmaceuticals is also developing a next-generation C5 inhibitor named ALXN 1210 that is designed to use a less frequent intravenous dosing schedule of at least monthly. We are also aware that there are a number of other companies that are actively developing product candidates for the treatment of PNH, including a product candidate directed at complement component 3, or C3, inhibition that is currently in preclinical development by Amyndas Pharmaceuticals, a product candidate directed at C3 inhibition such as APL-2 that is currently in clinical development by Apellis Pharmaceuticals, product candidates directed at C5 inhibition such as ALN-CC5, an RNAi therapeutic targeting the production of C5 being developed by Alnylam that is in early clinical trials, Coversin, a small protein inhibitor of C5 being developed by Akari Pharmaceuticals that is in early clinical trials, LFG316, a monoclonal antibody inhibitor of C5 being developed by Novartis Pharma, and other product candidates directed at other mechanisms of complement inhibition such as TNT009, an

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antibody against C1s, being developed by True North Therapeutics in early clinical trials, and ACH-4471, an orally available small molecule inhibitor of complement Factor D, that is currently in preclinical development by Achillion Pharmaceuticals. In addition, we are aware that there are a number of companies that are actively developing product candidates that are in clinical development for the treatment of geographic atrophy, or GA, a more severe form of AMD to which dry AMD progresses, including lampalizumab, a Factor D complement inhibitor for the treatment of GA being developed by Roche that is in Phase 3 clinical trials, LFG316, an anti-C5 monoclonal antibody being developed by Novartis Pharma that is in Phase 2 clinical trials, Zimura, a C5 inhibitor being developed by Ophthotech that is entering Phase 2/3 clinical trials, and other product candidates that do not target the complement system that are in Phase 2 or Phase 3 clinical trials, including compounds being developed by Acucela, Allergan, GlaxoSmithKline and Novartis Pharma.

        Our competitors may succeed in developing, acquiring or licensing technologies and products that are more effective, have fewer side effects or more tolerable side effects or are less costly than any product candidates that we are currently developing or that we may develop, which could render our product candidates obsolete and noncompetitive.

        Our commercial opportunity could be reduced or eliminated if our competitors develop and commercialize products that are safer, more effective, have fewer or less severe side effects, are more convenient or are less expensive than any products that we, or any future collaborators, may develop. Our competitors also may obtain FDA or other marketing approval for their products before we, or any future collaborators, are able to obtain approval for ours, which could result in our competitors establishing a strong market position before we, or any future collaborators, are able to enter the market.

        Many of our existing and potential future competitors have significantly greater financial resources and expertise in research and development, manufacturing, preclinical testing, conducting clinical trials, obtaining marketing approvals and marketing approved products than we do, and may be able to reduce the price at which they sell their products. Mergers and acquisitions in the pharmaceutical and biotechnology industries may result in even more resources being concentrated among a smaller number of our competitors. Smaller or early stage companies may also prove to be significant competitors, particularly through collaborative arrangements with large and established companies. These competitors also compete with us in recruiting and retaining qualified scientific and management personnel and establishing clinical trial sites and patient registration for clinical trials, as well as in acquiring technologies complementary to, or necessary for, the development of our product candidates.

If clinical trials of our product candidates fail to satisfactorily demonstrate safety and efficacy to the FDA and other regulators, we, or any future collaborators, may incur additional costs or experience delays in completing, or ultimately be unable to complete, the development and commercialization of these product candidates.

        We, and any future collaborators, are not permitted to commercialize, market, promote or sell any product candidate in the United States without obtaining marketing approval from the FDA. Foreign regulatory authorities, such as the EMA, impose similar requirements. We have not previously submitted a NDA to the FDA or similar drug approval filings to comparable foreign regulatory authorities for any of our product candidates. We, and any future collaborators, must complete extensive preclinical development and clinical trials to demonstrate the safety and efficacy of our product candidates in humans before we will be able to obtain these approvals.

        Clinical testing is expensive, is difficult to design and implement, can take many years to complete and is inherently uncertain as to outcome. We cannot guarantee that any clinical trials will be conducted as planned or completed on schedule, if at all. The clinical development of our product candidates is susceptible to the risk of failure inherent at any stage of product development, including

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failure to demonstrate efficacy in a clinical trial or across a broad population of patients, the occurrence of adverse events that are severe or medically or commercially unacceptable, failure to comply with protocols or applicable regulatory requirements and determination by the FDA or any comparable foreign regulatory authority that a product candidate may not continue development or is not approvable. It is possible that even if one or more of our product candidates has a beneficial effect, that effect will not be detected during clinical evaluation as a result of one or more of a variety of factors, including the size, duration, design, measurements, conduct or analysis of our clinical trials. Conversely, as a result of the same factors, our clinical trials may indicate an apparent positive effect of a product candidate that is greater than the actual positive effect, if any. Similarly, in our clinical trials we may fail to detect toxicity of or intolerability caused by our product candidates, or mistakenly believe that our product candidates are toxic or not well tolerated when that is not in fact the case.

        Any inability to successfully complete preclinical and clinical development could result in additional costs to us, or any future collaborators, and impair our ability to generate revenues from product sales, regulatory and commercialization milestones and royalties. Moreover, if we, or any future collaborators, are required to conduct additional clinical trials or other testing of our product candidates beyond the trials and testing that we or they contemplate, if we or they are unable to successfully complete clinical trials of our product candidates or other testing or the results of these trials or tests are unfavorable, uncertain or are only modestly favorable, or there are unacceptable safety concerns associated with our product candidates, we, or any future collaborators may:

        Our failure to successfully complete clinical trials of our product candidates and to demonstrate the efficacy and safety necessary to obtain regulatory approval to market any of our product candidates would significantly harm our business.

Our product candidates may cause undesirable side effects or have other properties that could delay or prevent their regulatory approval, limit the commercial profile of an approved label, or result in significant negative consequences following marketing approval, if any.

        Undesirable side effects caused by our product candidates could cause us or regulatory authorities to interrupt, delay or halt clinical trials and could result in a more restrictive label or the delay or denial of regulatory approval by the FDA or comparable foreign regulatory authorities. Results of our clinical trials could reveal a high and unacceptable severity and prevalence of side effects or unexpected characteristics. To date, subjects exposed to our product candidate RA101495 in our Phase 1 clinical trial have experienced drug-related side effects including injection site erythema, which was reported in patients receiving the highest dose, fatigue, headache, dizziness, rash and upper respiratory tract infection.

        If unacceptable side effects arise in the development of our product candidates, we, the FDA or comparable foreign regulatory authorities, the Institutional Review Boards, or IRBs, or independent

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ethics committees at the institutions in which our studies are conducted, or the Data Safety Monitoring Board, or DSMB, could suspend or terminate our clinical trials or the FDA or comparable foreign regulatory authorities could order us to cease clinical trials or deny approval of our product candidates for any or all targeted indications. Treatment-related side effects could also affect patient recruitment or the ability of enrolled patients to complete the trial or result in potential product liability claims. In addition, these side effects may not be appropriately recognized or managed by the treating medical staff. We expect to have to train medical personnel using our product candidates to understand the side effect profiles for our clinical trials and upon any commercialization of any of our product candidates. Inadequate training in recognizing or managing the potential side effects of our product candidates could result in patient injury or death. Any of these occurrences may harm our business, financial condition and prospects significantly.

        Moreover, clinical trials of our product candidates are conducted in carefully defined sets of patients who have agreed to enter into clinical trials. Consequently, it is possible that our clinical trials, or those of any future collaborator, may indicate an apparent positive effect of a product candidate that is greater than the actual positive effect, if any, or alternatively fail to identify undesirable side effects. If, following approval of a product candidate, we, or others, discover that the product is less effective than previously believed or causes undesirable side effects that were not previously identified, any of the following adverse events could occur:

        Any of these events could harm our business and operations, and could negatively impact our stock price.

If we fail to develop and commercialize other product candidates, we may be unable to grow our business.

        Although the development and commercialization of RA101495 is our primary focus, as part of our longer-term growth strategy, we plan to evaluate the development and commercialization of other therapies for complement-mediated diseases, including rare blood, neurologic, ophthalmologic, renal and inflammatory diseases. We will evaluate internal opportunities from our current product candidates, and also may choose to in-license or acquire other product candidates as well as commercial products to treat patients suffering from immune-mediated or orphan or other disorders with high unmet medical needs and limited treatment options. These other product candidates will require additional, time-consuming development efforts prior to commercial sale, including preclinical studies, clinical trials and approval by the FDA and/or applicable foreign regulatory authorities. All product candidates are prone to the risks of failure that are inherent in pharmaceutical product development, including the

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possibility that the product candidate will not be shown to be sufficiently safe and effective for approval by regulatory authorities. In addition, we cannot assure you that any such products that are approved will be manufactured or produced economically, successfully commercialized or widely accepted in the marketplace or be more effective than other commercially available alternatives.

Our preclinical programs may not produce product candidates that are suitable for clinical trials or that can be successfully commercialized or generate revenue through partnerships.

        We must successfully complete preclinical testing for RA101495 and our other programs, which may include demonstrating activity and comprehensive studies to show the lack of toxicity and other adverse effects in established animal models, before commencing clinical trials for any product candidate. Many pharmaceutical and biological products do not successfully complete preclinical testing and, even if preclinical testing is successfully completed, may fail in clinical trials. In addition, there can be no assurance that positive results from preclinical studies will be predictive of results obtained from subsequent preclinical studies or clinical trials. We also cannot be certain that any product candidates that do advance into clinical trials will successfully demonstrate safety and efficacy in clinical trials. Even if we achieve positive results in early clinical trials, they may not be predictive of the results in later trials.

We may expend our limited resources to pursue a particular product candidate or indication and fail to capitalize on product candidates or indications that may be more profitable or for which there is a greater likelihood of success.

        Because we have limited financial and managerial resources, we intend to focus on developing product candidates for specific indications that we identify as most likely to succeed, in terms of both their potential for marketing approval and commercialization. As a result, we may forego or delay pursuit of opportunities with other product candidates or for other indications that may prove to have greater commercial potential.

        Our resource allocation decisions may cause us to fail to capitalize on viable commercial products or profitable market opportunities. Our spending on current and future research and development programs and product candidates for specific indications may not yield any commercially viable product candidates. If we do not accurately evaluate the commercial potential or target market for a particular product candidate, we may relinquish valuable rights to that product candidate through collaboration, licensing or other royalty arrangements in cases in which it would have been more advantageous for us to retain sole development and commercialization rights to the product candidate.

If the FDA or comparable foreign regulatory authorities approve generic versions of any of our product candidates that receive marketing approval, or such authorities do not grant such products appropriate periods of data exclusivity before approving generic versions of such products, the sales of such products could be adversely affected.

        Once a NDA is approved, the product covered thereby becomes a "reference-listed drug" in the FDA's publication, "Approved Drug Products with Therapeutic Equivalence Evaluations," or the Orange Book. Manufacturers may seek approval of generic versions of reference-listed drugs through submission of abbreviated new drug applications, or ANDAs, in the United States. In support of an ANDA, a generic manufacturer generally must show that its product has the same active ingredient(s), dosage form, strength, route of administration and conditions of use or labeling as the reference-listed drug and that the generic version is bioequivalent to the reference-listed drug, meaning, in part, that it is absorbed in the body at the same rate and to the same extent. Generic products may be significantly less costly to bring to market than the reference-listed drug and companies that produce generic products are generally able to offer them at lower prices. Thus, following the introduction of a generic

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drug, a significant percentage of the sales of any branded product or reference-listed drug may be typically lost to the generic product.

        The FDA may not approve an ANDA for a generic product until any applicable period of non-patent exclusivity for the reference-listed drug has expired. The Federal Food, Drug, and Cosmetic Act, or FDCA, provides a period of five years of non-patent exclusivity for a new drug containing a new chemical entity, or NCE. Specifically, in cases where such exclusivity has been granted, an ANDA may not be filed with the FDA until the expiration of five years unless the submission is accompanied by a Paragraph IV certification that a patent covering the reference-listed drug is either invalid or will not be infringed by the generic product, in which case the applicant may submit its application four years following approval of the reference-listed drug. It is unclear whether the FDA will treat the active ingredients in our product candidates as NCEs and, therefore, afford them five years of NCE data exclusivity if they are approved. If any product we develop does not receive five years of NCE exclusivity, the FDA may approve generic versions of such product three years after its date of approval, subject to the requirement that the ANDA applicant certifies to any patents listed for our products in the Orange Book. Three year exclusivity is given to a drug if the NDA includes reports of one or more new clinical investigations, other than bioavailability or bioequivalence studies, that were conducted by or for the applicant and are essential to the approval of the NDA. Manufacturers may seek to launch these generic products following the expiration of the applicable marketing exclusivity period, even if we still have patent protection for our product.

        Competition that our products may face from generic versions of our products could negatively impact our future revenue, profitability and cash flows and substantially limit our ability to obtain a return on our investments in those product candidates.

Even if we complete the necessary preclinical studies and clinical trials, the marketing approval process is expensive, time consuming and uncertain and may prevent us or any future collaborators from obtaining approvals for the commercialization of some or all of our product candidates. As a result, we cannot predict when or if, and in which territories, we, or any future collaborators, will obtain marketing approval to commercialize a product candidate.

        The research, testing, manufacturing, labeling, approval, selling, marketing, promotion and distribution of products are subject to extensive regulation by the FDA and comparable foreign regulatory authorities. We, and any future collaborators, are not permitted to market our product candidates in the United States or in other countries until we, or they, receive approval of a NDA from the FDA or marketing approval from applicable regulatory authorities outside the United States. Our product candidates are in various stages of development and are subject to the risks of failure inherent in drug development. We have not submitted an application for or received marketing approval for any of our product candidates in the United States or in any other jurisdiction. We have limited experience in conducting and managing the clinical trials necessary to obtain marketing approvals, including FDA approval of a NDA.

        The process of obtaining marketing approvals, both in the United States and abroad, is lengthy, expensive and uncertain. It may take many years, if approval is obtained at all, and can vary substantially based upon a variety of factors, including the type, complexity and novelty of the product candidates involved. Securing marketing approval requires the submission of extensive preclinical and clinical data and supporting information to regulatory authorities for each therapeutic indication to establish the product candidate's safety and efficacy. Securing marketing approval also requires the submission of information about the product manufacturing process to, and inspection of manufacturing facilities by, the regulatory authorities. The FDA or other regulatory authorities may determine that our product candidates are not safe and effective, only moderately effective or have undesirable or unintended side effects, toxicities or other characteristics that preclude our obtaining marketing approval or prevent or limit commercial use. Any marketing approval we ultimately obtain may be limited or subject to restrictions or post-approval commitments that render the approved product not commercially viable.

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        In addition, changes in marketing approval policies during the development period, changes in or the enactment or promulgation of additional statutes, regulations or guidance or changes in regulatory review for each submitted product application, may cause delays in the approval or rejection of an application. Regulatory authorities have substantial discretion in the approval process and may refuse to accept any application or may decide that our data are insufficient for approval and require additional preclinical, clinical or other studies. In addition, varying interpretations of the data obtained from preclinical and clinical testing could delay, limit or prevent marketing approval of a product candidate. Any marketing approval we, or any future collaborators, ultimately obtain may be limited or subject to restrictions or post-approval commitments that render the approved product not commercially viable.

        Moreover, principal investigators for our clinical trials may serve as scientific advisors or consultants to us from time to time and receive compensation in connection with such services. Under certain circumstances, we may be required to report some of these relationships to the FDA or other regulatory authority. The FDA or other regulatory authority may conclude that a financial relationship between us and a principal investigator has created a conflict of interest or otherwise affected interpretation of the study. The FDA or other regulatory authority may therefore question the integrity of the data generated at the applicable clinical trial site and the utility of the clinical trial itself may be jeopardized. This could result in a delay in approval, or rejection, of our marketing applications by the FDA or other regulatory authority, as the case may be, and may ultimately lead to the denial of marketing approval of one or more of our product candidates.

        Any delay in obtaining or failure to obtain required approvals could negatively impact our ability or that of any future collaborators to generate revenue from the particular product candidate, which likely would result in significant harm to our financial position and adversely impact our stock price.

If we encounter difficulties enrolling patients in our clinical trials, our clinical development activities could be delayed or otherwise adversely affected.

        We may not be able to initiate or continue clinical trials required by the FDA, EMA or other foreign regulatory agencies for RA101495 if we are unable to locate and enroll a sufficient number of eligible patients to participate in these clinical trials. We will be required to identify and enroll a sufficient number of patients with PNH, rMG and LN for each of our planned clinical trials of RA101495 in these indications. Each of these is a rare disease or indication with relatively small patient populations, which could result in slow enrollment of clinical trial participants. For example, we estimate that there are approximately 16,000 PNH patients worldwide, approximately 9,000 rMG patients in the United States and approximately 63,000 LN patients in the United States.

        Patient enrollment is affected by other factors, including:

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        Further, there are only a limited number of specialist physicians who treat patients with these diseases, and major clinical centers are concentrated in a few geographic regions. We also may encounter difficulties in identifying and enrolling such patients with a stage of disease appropriate for our ongoing or future clinical trials. In addition, the process of finding and diagnosing patients may prove costly. Our inability to enroll a sufficient number of patients for any of our clinical trials would result in significant delays or may require us to abandon one or more clinical trials.

Ingredients, excipients and other materials necessary to manufacture RA101495 may not be available on commercially reasonable terms, or at all, which may adversely affect the development and commercialization of RA101495.

        We and our third-party manufacturers must obtain from third-party suppliers the active pharmaceutical ingredients, excipients and primary and secondary packaging materials necessary for our contract manufacturers to produce RA101495 for our clinical trials and, to the extent approved or commercialized, for commercial distribution. There is no guarantee that we would be able to enter into all the necessary agreements with third-party suppliers that we require for the supply of such materials on commercially reasonable terms or at all. Even if we were able to secure such agreements or guarantees, our suppliers may be unable or choose not to provide us the ingredients, excipients or materials in a timely manner or in the quantities required. If we or our third-party manufacturers are unable to obtain the quantities of these ingredients, excipients or materials that are necessary for the manufacture of commercial supplies of RA101495, our ability to generate revenue from the sale of RA101495 would be materially and adversely affected. Further, if we or our third-party manufacturers are unable to obtain active pharmaceutical ingredients, excipients and materials as necessary for our clinical trials or for the manufacture of commercial supplies of our product candidates, if approved, potential regulatory approval or commercialization would be delayed, which would materially and adversely affect our ability to generate revenue from the sale of our product candidates.

Even if one of our product candidates receives marketing approval, it may fail to achieve the degree of market acceptance by physicians, patients, third-party payors and others in the medical community necessary for commercial success, in which case we may not generate significant revenues or become profitable.

        We have never commercialized a product, and even if one of our product candidates is approved by the appropriate regulatory authorities for marketing and sale, it may nonetheless fail to gain sufficient market acceptance by physicians, patients, third-party payors and others in the medical community. Physicians are often reluctant to switch their patients from existing therapies even when new and potentially more effective or convenient treatments enter the market. Further, patients often acclimate to the therapy that they are currently taking and do not want to switch unless their physicians recommend switching products or they are required to switch therapies due to lack of reimbursement for existing therapies. Eculizumab is the only drug approved for the treatment of PNH, and even if we are able to obtain marketing approval of RA101495 for the treatment of PNH, we may not be able to successfully convince physicians or patients to switch from eculizumab to RA101495. In addition, even if we are able to demonstrate our product candidates' safety and efficacy to the FDA and other regulators, safety concerns in the medical community may hinder market acceptance.

        Efforts to educate the medical community and third-party payors on the benefits of our product candidates may require significant resources, including management time and financial resources, and may not be successful. If any of our product candidates is approved but does not achieve an adequate level of market acceptance, we may not generate significant revenues and we may not become

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profitable. The degree of market acceptance of our product candidates, if approved for commercial sale, will depend on a number of factors, including:

Even if we, or any future collaborators, are able to commercialize any product candidate that we, or they, develop, the product may become subject to unfavorable pricing regulations or third-party payor coverage and reimbursement policies, any of which could harm our business.

        Patients who are provided medical treatment for their conditions generally rely on third party payors to reimburse all or part of the costs associated with their treatment. Therefore, our ability, and the ability of any future collaborators to commercialize any of our product candidates will depend in part on the extent to which coverage and reimbursement for these products and related treatments will be available from third party payors including government health administration authorities and private health coverage insurers. Third-party payors decide which medications they will cover and establish reimbursement levels. We cannot be certain that reimbursement will be available for RA101495 or any of our product candidates. Also, we cannot be certain that reimbursement policies will not reduce the demand for, or the price paid for, our products. The insurance coverage and reimbursement status of newly-approved products for orphan diseases is particularly uncertain, and failure to obtain or maintain adequate coverage and reimbursement for RA101495 or any other product candidates could limit our ability to generate revenue.

        If coverage and reimbursement are not available, or reimbursement is available only to limited levels, we, or any future collaborators, may not be able to successfully commercialize our product candidates. Even if coverage is provided, the approved reimbursement amount may not be high enough to allow us, or any future collaborators, to establish or maintain pricing sufficient to realize a sufficient return on our or their investments. In the United States, no uniform policy of coverage and reimbursement for products exists among third-party payors and coverage and reimbursement for products can differ significantly from payor to payor. As a result, the coverage determination process is often a time-consuming and costly process that will require us to provide scientific and clinical support for the use of our products to each payor separately, with no assurance that coverage and adequate reimbursement will be applied consistently or obtained in the first instance.

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        There is significant uncertainty related to third-party payor coverage and reimbursement of newly approved drugs. Marketing approvals, pricing and reimbursement for new drug products vary widely from country to country. Some countries require approval of the sale price of a drug before it can be marketed. In many countries, the pricing review period begins after marketing or product licensing approval is granted. In some foreign markets, prescription pharmaceutical pricing remains subject to continuing governmental control even after initial approval is granted. As a result, we, or any future collaborators, might obtain marketing approval for a product in a particular country, but then be subject to price regulations that delay commercial launch of the product, possibly for lengthy time periods, which may negatively impact the revenues we are able to generate from the sale of the product in that country. Adverse pricing limitations may hinder our ability or the ability of any future collaborators to recoup our or their investment in one or more product candidates, even if our product candidates obtain marketing approval.

        The healthcare industry is acutely focused on cost containment, both in the United States and elsewhere. Government authorities and other third-party payors have attempted to control costs by limiting coverage and the amount of reimbursement for particular medications, which could affect our ability or that of any future collaborators to sell our product candidates profitably. These payors may not view our products, if any, as cost-effective, and coverage and reimbursement may not be available to our customers, or those of any future collaborators, or may not be sufficient to allow our products, if any, to be marketed on a competitive basis. Cost-control initiatives could cause us, or any future collaborators, to decrease the price we, or they, might establish for products, which could result in lower than anticipated product revenues. If the prices for our products, if any, decrease or if governmental and other third-party payors do not provide coverage or adequate reimbursement, our prospects for revenue and profitability will suffer.

        There may also be delays in obtaining coverage and reimbursement for newly approved drugs, and coverage may be more limited than the indications for which the drug is approved by the FDA or comparable foreign regulatory authorities. Moreover, eligibility for reimbursement does not imply that any drug will be paid for in all cases or at a rate that covers our costs, including research, development, manufacture, sale and distribution. Reimbursement rates may vary, by way of example, according to the use of the product and the clinical setting in which it is used. Reimbursement rates may also be based on reimbursement levels already set for lower cost drugs or may be incorporated into existing payments for other services.

        In addition, increasingly, third-party payors are requiring higher levels of evidence of the benefits and clinical outcomes of new technologies and are challenging the prices charged. We cannot be sure that coverage will be available for any product candidate that we, or any future collaborator, commercialize and, if available, that the reimbursement rates will be adequate. Further, the net reimbursement for drug products may be subject to additional reductions if there are changes to laws that presently restrict imports of drugs from countries where they may be sold at lower prices than in the United States. An inability to promptly obtain coverage and adequate payment rates from both government-funded and private payors for any of our product candidates for which we, or any future collaborator, obtain marketing approval could significantly harm our operating results, our ability to raise capital needed to commercialize products and our overall financial condition.

If any product liability lawsuits are successfully brought against us or any of our collaborative partners, we may incur substantial liabilities and may be required to limit commercialization of our product candidates.

        We face an inherent risk of product liability lawsuits related to the testing of our product candidates in seriously ill patients and will face an even greater risk if product candidates are approved by regulatory authorities and introduced commercially. Product liability claims may be brought against us or our partners by participants enrolled in our clinical trials, patients, health care providers or others

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using, administering or selling any of our future approved products. If we cannot successfully defend ourselves against any such claims, we may incur substantial liabilities, which may result in:

        If any of our product candidates are approved for commercial sale, we will be highly dependent upon consumer perceptions of us and the safety and quality of our products. We could be adversely affected if we are subject to negative publicity associated with illness or other adverse effects resulting from patients' use or misuse of our products or any similar products distributed by other companies.

        Although we maintain product liability insurance coverage in the amount of up to $5.0 million in the aggregate and clinical trial liability insurance of $5.0 million in the aggregate, this insurance may not fully cover potential liabilities that we may incur. The cost of any product liability litigation or other proceeding, even if resolved in our favor, could be substantial. We will need to increase our insurance coverage if we commercialize any product that receives marketing approval. In addition, insurance coverage is becoming increasingly expensive. If we are unable to maintain sufficient insurance coverage at an acceptable cost or to otherwise protect against potential product liability claims, it could prevent or inhibit the development and commercial production and sale of our product candidates, which could harm our business, financial condition, results of operations and prospects.

We currently have no marketing, sales or distribution infrastructure with respect to our product candidates. If we are unable to develop our sales, marketing and distribution capability on our own or through collaborations with marketing partners, we will not be successful in commercializing our product candidates.

        We currently have no marketing, sales or distribution capabilities and have limited sales or marketing experience within our organization. If our product candidate RA101495 is approved, we intend either to establish a sales and marketing organization with technical expertise and supporting distribution capabilities to commercialize RA101495, or to outsource this function to a third party. Either of these options would be expensive and time consuming. Some or all of these costs may be incurred in advance of any approval of RA101495. In addition, we may not be able to hire a sales force in the United States or other target market that is sufficient in size or has adequate expertise in the medical markets that we intend to target. These risks may be particularly pronounced due to our focus on our lead indications of PNH, rMG and LN, each of which is a rare disease with relatively small patient populations. Any failure or delay in the development of our or third parties' internal sales, marketing and distribution capabilities would adversely impact the commercialization of RA101495 and other future product candidates.

        With respect to our existing and future product candidates, we may choose to collaborate with third parties that have direct sales forces and established distribution systems, either to augment or to serve as an alternative to our own sales force and distribution systems. Our product revenue may be lower than if it directly marketed or sold any approved products. In addition, any revenue we receive

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will depend in whole or in part upon the efforts of these third parties, which may not be successful and are generally not within our control. If we are unable to enter into these arrangements on acceptable terms or at all, we may not be able to successfully commercialize any approved products. If we are not successful in commercializing any approved products, our future product revenue will suffer and we may incur significant additional losses.

The route of administration, formulation or dose for RA101495, which we are currently developing for SC self-administration, may be inadequate.

        We are currently developing RA101495 for SC self-administration. Unsatisfactory drug availability due to problems relating to this route of administration or the ability of the drug to bind to its target is another potential cause of lack of efficacy of RA101495 if and when it is commercialized. C5, the target of RA101495 is predominantly found in blood. For PNH, RA101495 will be administered subcutaneously. In our recently completed Phase 1 study of RA101495 in single-ascending dose cohorts and a multiple-dose cohort, single and repeat SC doses of RA101495 were safe and well tolerated in healthy volunteers. However, if daily subcutaneous administration proves to be unfeasible, then we may need to research additional doses, formulations or routes of administration, which could delay commercialization of RA101495 and result in significant additional costs to us. Additionally, while we may offer training in SC injections, reliance on patient self-administration may lead to higher rates of user error due to poor administration procedure by patients and reduced patient compliance as compared with administration by healthcare professionals.

If we, or any future collaborators, experience any of a number of possible unforeseen events in connection with clinical trials of our product candidates, potential clinical development, marketing approval or commercialization of our product candidates could be delayed or prevented.

        We, or any future collaborators, may experience numerous unforeseen events during, or as a result of, clinical trials that could delay or prevent clinical development, marketing approval or commercialization of our product candidates, including:

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        We or any future collaborators could also encounter delays if a clinical trial is suspended or terminated by us or our collaborators, by the IRBs or independent ethics committees of the institutions in which such trials are being conducted, by the DSMB for such trial or by the FDA or other regulatory authorities. Such authorities may suspend or terminate a clinical trial due to a number of factors, including failure to conduct the clinical trial in accordance with regulatory requirements or our clinical protocols, inspection of the clinical trial operations or trial site by the FDA or other regulatory authorities resulting in the imposition of a clinical hold, unforeseen safety issues or adverse side effects, failure to demonstrate a benefit from using a drug, changes in governmental regulations or administrative actions or lack of adequate funding to continue the clinical trial.

        Further, conducting clinical trials in foreign countries, as we plan to do for our product candidates, presents additional risks that may delay completion of our clinical trials. These risks include the failure of enrolled patients in foreign countries to adhere to clinical protocol as a result of differences in healthcare services or cultural customs, managing additional administrative burdens associated with foreign regulatory schemes, as well as political and economic risks relevant to such foreign countries.

        Product development costs for us, or any future collaborators, will increase if we, or they, experience delays in testing or pursuing marketing approvals and we, or they, may be required to obtain additional funds to complete clinical trials and prepare for possible commercialization of our product candidates. We do not know whether any preclinical tests or clinical trials will begin as planned, will need to be restructured, or will be completed on schedule or at all. Significant preclinical study or clinical trial delays also could shorten any periods during which we, or any future collaborators, may have the exclusive right to commercialize our product candidates or allow our competitors, or the competitors of any future collaborators, to bring products to market before we, or any future collaborators, do and impair our ability, or the ability of any future collaborators, to successfully commercialize our product candidates and may harm our business and results of

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operations. In addition, many of the factors that lead to clinical trial delays may ultimately lead to the denial of marketing approval of any of our product candidates.

Results of preclinical studies and early clinical trials may not be predictive of results of future clinical trials.

        The outcome of preclinical studies and early clinical trials may not be predictive of the success of later clinical trials, and interim results of clinical trials do not necessarily predict success in the results of completed clinical trials. Many companies in the pharmaceutical and biotechnology industries have suffered significant setbacks in late-stage clinical trials after achieving positive results in earlier development, and we could face similar setbacks. The design of a clinical trial can determine whether its results will support approval of a product and flaws in the design of a clinical trial may not become apparent until the clinical trial is well advanced. We have limited experience in designing clinical trials and may be unable to design and execute a clinical trial to support marketing approval. In addition, preclinical and clinical data are often susceptible to varying interpretations and analyses. Many companies that believed their product candidates performed satisfactorily in preclinical studies and clinical trials have nonetheless failed to obtain marketing approval for the product candidates. Even if we, or any future collaborators, believe that the results of clinical trials for our product candidates warrant marketing approval, the FDA or comparable foreign regulatory authorities may disagree and may not grant marketing approval of our product candidates.

        In some instances, there can be significant variability in safety or efficacy results between different clinical trials of the same product candidate due to numerous factors, including changes in trial procedures set forth in protocols, differences in the size and type of the patient populations, changes in and adherence to the dosing regimen and other clinical trial protocols and the rate of dropout among clinical trial participants. If we fail to receive positive results in clinical trials of our product candidates, the development timeline and regulatory approval and commercialization prospects for our most advanced product candidates, and, correspondingly, our business and financial prospects would be negatively impacted.

Chronic dosing of patients with RA101495 could lead to an immune response that causes adverse reactions or impairs the activity and/or efficacy of the drug, or causes other side effects.

        There is a risk that chronic dosing of patients with RA101495 may lead to an immune response that causes adverse reactions or impairs the activity and/or efficacy of the drug. Patients may develop an allergic reaction to the drug and/or develop antibodies directed at the drug. Impaired drug activity could be caused by neutralization of the drug's inhibitory activity or by an increased rate of clearance of the drug from circulation. For example, one potential side effect of RA101495 that has occurred in patients receiving eculizumab, a humanized antibody against C5, is an increased incidence of meningococcal infections as a result of inhibition of the terminal complement system in a manner similar to RA101495. As a result, patients receiving RA101495 may also require immunization with a meningococcal vaccine and prophylactic antibiotics.

        Any immune response that causes adverse reactions or impairs the activity of the drug could cause a delay in or termination of our development of RA101495, which would have a material adverse effect on our financial condition and results of operation.

Risks Related to Regulatory Approval and Marketing of Our Product Candidates and Other Legal Compliance Matters

We plan to seek orphan drug designation for RA101495, but we may be unable to obtain such designation or to maintain the benefits associated with orphan drug status, including market exclusivity, even if that designation is granted.

        We plan to seek orphan drug designation for RA101495 in specific orphan indications in which there is a medically plausible basis for its use and may seek orphan drug designation for other

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preclinical product candidates in our pipeline or that we may develop. In the United States, orphan drug designation entitles a party to financial incentives such as opportunities for grant funding towards clinical trial costs, tax advantages, and user-fee waivers. After the FDA grants orphan drug designation, the generic identity of the drug and its potential orphan use are disclosed publicly by the FDA. Orphan drug designation does not convey any advantage in, or shorten the duration of, the regulatory review and approval process. Although we intend to seek orphan drug designation for RA101495, we may never receive such designation. Moreover, obtaining orphan drug designation for one indication for RA101495 does not mean we will be able to obtain such designation for another indication.

        If a product that has orphan drug designation subsequently receives the first FDA approval for a particular active ingredient for the disease for which it has such designation, the product is entitled to orphan drug exclusivity, which means that the FDA may not approve any other applications, including a NDA, to market the same drug for the same indication for seven years, except in limited circumstances such as if the FDA finds that the holder of the orphan drug exclusivity has not shown that it can assure the availability of sufficient quantities of the orphan drug to meet the needs of patients with the disease or condition for which the drug was designated. Similarly, the FDA can subsequently approve a drug with the same active moiety for the same condition during the exclusivity period if the FDA concludes that the later drug is clinically superior, meaning the later drug is safer, more effective, or makes a major contribution to patient care. Even if we were to obtain orphan drug designation for RA101495, we may not be the first to obtain marketing approval for any particular orphan indication due to the uncertainties associated with developing pharmaceutical products, and thus approval of RA101495 could be blocked for seven years if another company previously obtained approval and orphan drug exclusivity for the same drug and same condition. If we do obtain exclusive marketing rights in the United States, they may be limited if we seek approval for an indication broader than the orphan designated indication and may be lost if the FDA later determines that the request for designation was materially defective or if we are unable to assure sufficient quantities of the product to meet the needs of the relevant patients. Further, exclusivity may not effectively protect the product from competition because different drugs with different active moieties can be approved for the same condition, the same drugs can be approved for different indications and might then be used off-label in our approved indication, and different drugs for the same condition may already be approved and commercially available.

Laws and regulations governing any international operations we may have in the future may preclude us from developing, manufacturing and selling certain products outside of the United States and require us to develop and implement costly compliance programs.

        If we further expand our operations outside of the United States, we must dedicate additional resources to comply with numerous laws and regulations in each jurisdiction in which we plan to operate. The Foreign Corrupt Practices Act, or FCPA, prohibits any U.S. individual or business from paying, offering, authorizing payment or offering of anything of value, directly or indirectly, to any foreign official, political party or candidate for the purpose of influencing any act or decision of the foreign entity in order to assist the individual or business in obtaining or retaining business. The FCPA also obligates companies whose securities are listed in the United States to comply with certain accounting provisions requiring the company to maintain books and records that accurately and fairly reflect all transactions of the corporation, including international subsidiaries, and to devise and maintain an adequate system of internal accounting controls for international operations.

        Compliance with the FCPA is expensive and difficult, particularly in countries in which corruption is a recognized problem. In addition, the FCPA presents particular challenges in the pharmaceutical industry, because, in many countries, hospitals are operated by the government, and doctors and other hospital employees are considered foreign officials. Certain payments to hospitals in connection with clinical trials and other work have been deemed to be improper payments to government officials and have led to FCPA enforcement actions.

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        Various laws, regulations and executive orders also restrict the use and dissemination outside of the United States, or the sharing with certain non-U.S. nationals, of information classified for national security purposes, as well as certain products and technical data relating to those products. If we expand our presence outside of the United States, it will require us to dedicate additional resources to comply with these laws, and these laws may preclude us from developing, manufacturing, or selling certain products and product candidates outside of the United States, which could limit our growth potential and increase our development costs.

        The failure to comply with laws governing international business practices may result in substantial civil and criminal penalties and suspension or debarment from government contracting. The Securities and Exchange Commission, or SEC, also may suspend or bar issuers from trading securities on U.S. exchanges for violations of the FCPA's accounting provisions.

Governments outside the United States tend to impose strict price controls, which may adversely affect our revenues, if any.

        In some countries, such as the countries of the European Union, the pricing of prescription pharmaceuticals is subject to governmental control. In these countries, pricing negotiations with governmental authorities can take considerable time after the receipt of marketing approval for a product. To obtain reimbursement or pricing approval in some countries, we, or any future collaborators, may be required to conduct a clinical trial that compares the cost-effectiveness of our product to other available therapies. If reimbursement of our products is unavailable or limited in scope or amount, or if pricing is set at unsatisfactory levels, our business could be harmed.

We are subject to extensive government regulation and the failure to comply with these regulations may have a material adverse effect on our operations and business.

        Both before and after approval of any product, we and our suppliers, contract manufacturers and clinical investigators are subject to extensive regulation by governmental authorities in the United States and other countries, covering, among other things, testing, manufacturing, quality control, clinical trials, post-marketing studies, labeling, advertising, promotion, distribution, import and export, governmental pricing, price reporting and rebate requirements. Failure to comply with applicable requirements could result in one or more of the following actions: warning letters; unanticipated expenditures; delays in approval or refusal to approve a product candidate; product recall or seizure; interruption of manufacturing or clinical trials; operating or marketing restrictions; injunctions; criminal prosecution and civil or criminal penalties including fines and other monetary penalties; adverse publicity; and disruptions to our business. Further, government investigations into potential violations of these laws would require us to expend considerable resources and face adverse publicity and the potential disruption of our business even if we are ultimately found not to have committed a violation.

        Obtaining FDA approval of our product candidates requires substantial time, effort and financial resources and may be subject to both expected and unforeseen delays, and there can be no assurance that any approval will be granted on any of our product candidates on a timely basis, if at all. The FDA may decide that our data are insufficient for approval of our product candidates and require additional preclinical, clinical or other studies or additional work related to chemistry, manufacturing and controls. In addition, we, the FDA, IRBs or independent ethics committees may suspend or terminate human clinical trials at any time on various grounds, including a finding that the patients are or would be exposed to an unacceptable health risk or because of the way in which the investigators on which we rely carry out the trials. If we are required to conduct additional trials or to conduct other testing of our product candidates beyond that which we currently contemplate for regulatory approval, if we are unable to complete successfully our clinical trials or other testing, or if the results of these and other trials or tests fail to demonstrate efficacy or raise safety concerns, we may face substantial

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additional expenses, be delayed in obtaining marketing approval for our product candidates or may never obtain marketing approval.

        We are also required to comply with extensive governmental regulatory requirements after a product has received marketing authorization. Governing regulatory authorities may require post-marketing studies that may negatively impact the commercial viability of a product. Once on the market, a product may become associated with previously undetected adverse effects and/or may develop manufacturing difficulties. As a result of any of these or other problems, a product's regulatory approval could be withdrawn, which could harm our business and operating results.

Even if we obtain FDA approval of RA101495 or any of our other product candidates, we or our partners may never obtain approval or commercialize our products outside of the United States.

        In order to market any products outside of the United States, we must establish and comply with numerous and varying regulatory requirements of other countries regarding clinical trial design, safety and efficacy. Clinical trials conducted in one country may not be accepted by regulatory authorities in other countries, and regulatory approval in one country does not mean that regulatory approval will be obtained in any other country. Approval procedures vary among countries and can involve additional product testing and validation and additional administrative review periods. Seeking foreign regulatory approvals could result in significant delays, difficulties and costs for us and may require additional preclinical studies or clinical trials which would be costly and time consuming and could delay or prevent introduction of RA101495 or any of our other product candidates in those countries. We do not have experience in obtaining regulatory approval in international markets. If we or our partners fail to comply with regulatory requirements or to obtain and maintain required approvals, our target market will be reduced and our ability to realize the full market potential of our product candidates will be harmed.

Current and future legislation may increase the difficulty and cost for us and any future collaborators to obtain marketing approval of and commercialize our product candidates and affect the prices we, or they, may obtain.

        In the United States and some foreign jurisdictions, there have been a number of legislative and regulatory changes and proposed changes regarding the healthcare system that could, among other things, prevent or delay marketing approval of our product candidates, restrict or regulate post-approval activities and affect our ability, or the ability of any future collaborators, to profitably sell any products for which we, or they, obtain marketing approval. We expect that current laws, as well as other healthcare reform measures that may be adopted in the future, may result in more rigorous coverage criteria and in additional downward pressure on the price that we, or any future collaborators, may receive for any approved products.

        In March 2010 for example, President Obama signed into law the Patient Protection and Affordable Care Act, as amended by the Health Care and Education Reconciliation Act, or collectively the Affordable Care Act, or ACA. Among the provisions of the ACA of potential importance to our business and our product candidates are the following:

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        In addition, other legislative changes have been proposed and adopted since the ACA was enacted. These changes include the Budget Control Act of 2011, which, among other things, led to aggregate reductions to Medicare payments to providers of 2% per fiscal year, which went into effect on April 1, 2013 and will remain in effect through 2025 unless additional Congressional action is taken. On January 2, 2013, the American Taxpayer Relief Act of 2012 was signed into law, which, among other things, further reduced Medicare payments to several providers and increased the statute of limitations period for the government to recover overpayments to providers from three to five years. These new laws may result in additional reductions in Medicare and other healthcare funding. We expect that additional state and federal healthcare reform measures will be adopted in the future, any of which could limit the amounts that federal and state governments will pay for healthcare products and services, which could result in reduced demand for our product candidates or additional pricing pressures.

        Legislative and regulatory proposals have been made to expand post-approval requirements and restrict sales and promotional activities for pharmaceutical products. We cannot be sure whether additional legislative changes will be enacted, or whether the FDA regulations, guidance or interpretations will be changed, or what the impact of such changes on the marketing approvals of our product candidates, if any, may be. In addition, increased scrutiny by the United States Congress of the FDA's approval process may significantly delay or prevent marketing approval, as well as subject us and any future collaborators to more stringent product labeling and post-marketing testing and other requirements.

        Our relationships with customers and third-party payors, among others, will be subject to applicable anti-kickback, fraud and abuse and other healthcare laws and regulations, which could expose us to penalties, including criminal sanctions, civil penalties, contractual damages, reputational harm, fines, disgorgement, exclusion from participation in government healthcare programs, curtailment or restricting of our operations, and diminished profits and future earnings.

        Healthcare providers, physicians and third party-payors will play a primary role in the recommendation and prescription of any products for which we obtain marketing approval. Our future arrangements with third-party payors and customers, if any, will subject us to broadly applicable fraud and abuse and other healthcare laws and regulations. The laws and regulations may constrain the business or financial arrangements and relationships through which we market, sell and distribute any products for which we obtain marketing approval. These include the following:

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        Efforts to ensure that our business arrangements with third parties, and our business generally, will comply with applicable healthcare laws and regulations will involve substantial costs. It is possible that governmental authorities will conclude that our business practices may not comply with current or future statutes, regulations or case law involving applicable fraud and abuse or other healthcare laws and regulations. If our operations are found to be in violation of any of these laws or any other governmental regulations that may apply to us, we may be subject to significant civil, criminal and administrative penalties, damages, fines, imprisonment, exclusion of products from government funded healthcare programs, such as Medicare and Medicaid, disgorgement, contractual damages, reputational harm, and the curtailment or restructuring of our operations. Defending against any such actions can be costly, time-consuming and may require significant financial and personnel resources. Therefore, even if we are successful in defending against any such actions that may be brought against us, our business may be impaired. Further, if any of the physicians or other healthcare providers or entities with whom we expect to do business is found to be not in compliance with applicable laws, they may be subject to criminal, civil or administrative sanctions, including exclusions from government funded healthcare programs.

Even if we, or any future collaborators, obtain marketing approvals for our product candidates, the terms of approvals and ongoing regulation of our products may limit how we manufacture and market our products, which could impair our ability to generate revenue.

        Once marketing approval has been granted, an approved product and its manufacturer and marketer are subject to ongoing review and extensive regulation. We, and any future collaborators, must therefore comply with requirements concerning advertising and promotion for any of our product candidates for which we or they obtain marketing approval. Promotional communications with respect to prescription drugs are subject to a variety of legal and regulatory restrictions and must be consistent with the information in the product's approved labeling. Thus, we and any future collaborators will not be able to promote any products we develop for indications or uses for which they are not approved.

        In addition, manufacturers of approved products and those manufacturers' facilities are required to comply with extensive FDA requirements, including ensuring that quality control and manufacturing procedures conform to current Good Manufacturing Practices, or cGMPs, which include requirements relating to quality control and quality assurance as well as the corresponding maintenance of records and documentation and reporting requirements. We, our contract manufacturers, any future collaborators and their contract manufacturers could be subject to periodic unannounced inspections by the FDA to monitor and ensure compliance with cGMPs.

        Accordingly, assuming we, or any future collaborators, receive marketing approval for one or more of our product candidates, we, and any future collaborators, and our and their contract manufacturers will continue to expend time, money and effort in all areas of regulatory compliance, including manufacturing, production, product surveillance and quality control.

        If we, and any future collaborators, are not able to comply with post-approval regulatory requirements, we, and any future collaborators, could have the marketing approvals for our products withdrawn by regulatory authorities and our, or any future collaborators', ability to market any future products could be limited, which could adversely affect our ability to achieve or sustain profitability. Further, the cost of compliance with post-approval regulations may have a negative effect on our operating results and financial condition.

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Any of our product candidates for which we, or any future collaborators, obtain marketing approval in the future could be subject to post-marketing restrictions or withdrawal from the market and we, or any future collaborators, may be subject to substantial penalties if we, or they, fail to comply with regulatory requirements or if we, or they, experience unanticipated problems with our products following approval.

        Any of our product candidates for which we, or any future collaborators, obtain marketing approval, as well as the manufacturing processes, post-approval studies and measures, labeling, advertising and promotional activities for such product, among other things, will be subject to ongoing requirements of and review by the FDA, the EMA and other regulatory authorities. These requirements include submissions of safety and other post-marketing information and reports, registration and listing requirements, requirements relating to manufacturing, quality control, quality assurance and corresponding maintenance of records and documents, requirements regarding the distribution of samples to physicians and recordkeeping. Even if marketing approval of a product candidate is granted, the approval may be subject to limitations on the indicated uses for which the product may be marketed or to the conditions of approval, including the requirement to implement a Risk Evaluation and Mitigation Strategy.

        The FDA, the EMA and other regulatory authorities may also impose requirements for costly post-marketing studies or clinical trials and surveillance to monitor the safety or efficacy of a product. The FDA and other agencies, including the Department of Justice, closely regulate and monitor the post-approval marketing and promotion of products to ensure that they are manufactured, marketed and distributed only for the approved indications and in accordance with the provisions of the approved labeling. The FDA imposes stringent restrictions on manufacturers' communications regarding off-label use and if we, or any future collaborators, do not market any of our product candidates for which we, or they, receive marketing approval for only their approved indications, we, or they, may be subject to warnings or enforcement action for off-label marketing. Violation of the FDCA and other statutes relating to the promotion and advertising of prescription drugs may lead to investigations or allegations of violations of federal and state health care fraud and abuse laws and state consumer protection laws, including the False Claims Act.

        In addition, later discovery of previously unknown adverse events or other problems with our products or their manufacturers or manufacturing processes, or failure to comply with regulatory requirements, may yield various results, including:

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Additional time may be required to obtain regulatory approval for our product candidates because they are combination products.

        Because certain of our product candidates are designed to be self-administered SC by patients and may be packaged as pre-filled cartridges or pens, they may be regulated as drug/device combination products that require coordination within the FDA and similar foreign regulatory agencies for review of their device and drug components. Although the FDA and similar foreign regulatory agencies have systems in place for the review and approval of combination products such as ours, we may experience delays in the development and commercialization of our product candidates due to regulatory timing constraints and uncertainties in the product development and approval process.

If we fail to comply with environmental, health and safety laws and regulations, we could become subject to fines or penalties or incur costs that could harm our business.

        We are subject to numerous environmental, health and safety laws and regulations, including those governing laboratory procedures and the handling, use, storage, treatment and disposal of hazardous materials and wastes. From time to time and in the future, our operations may involve the use of hazardous and flammable materials, including chemicals and biological materials, and may also produce hazardous waste products. Even if we contract with third parties for the disposal of these materials and waste products, we cannot completely eliminate the risk of contamination or injury resulting from these materials. In the event of contamination or injury resulting from the use or disposal of our hazardous materials, we could be held liable for any resulting damages, and any liability could exceed our resources. We also could incur significant costs associated with civil or criminal fines and penalties for failure to comply with such laws and regulations.

        We maintain workers' compensation insurance to cover us for costs and expenses we may incur due to injuries to our employees resulting from the use of hazardous materials, but this insurance may not provide adequate coverage against potential liabilities. However, we do not maintain insurance for environmental liability or toxic tort claims that may be asserted against us.

        In addition, we may incur substantial costs in order to comply with current or future environmental, health and safety laws and regulations. Current or future environmental laws and regulations may impair our research, development or production efforts. In addition, failure to comply with these laws and regulations may result in substantial fines, penalties or other sanctions.

Risks Related to Our Dependence on Third Parties

We rely on third parties to conduct our clinical trials. If they do not perform satisfactorily, our business could be harmed.

        We do not independently conduct clinical trials of any of our product candidates. We rely on third parties, such as contract research organizations, or CROs, clinical data management organizations, medical institutions and clinical investigators, to conduct these clinical trials and expect to rely on these third parties to conduct clinical trials of any other product candidate that we develop. Any of these third parties may terminate their engagements with us under certain circumstances. We may not be able to enter into alternative arrangements or do so on commercially reasonable terms. In addition, there is a natural transition period when a new contract research organization begins work. As a result, delays would likely occur, which could negatively impact our ability to meet our expected clinical development timelines and harm our business, financial condition and prospects.

        Further, although our reliance on these third parties for clinical development activities limits our control over these activities, we remain responsible for ensuring that each of our trials is conducted in accordance with the applicable protocol, legal and regulatory requirements and scientific standards. For example, notwithstanding the obligations of a CRO for a trial of one of our product candidates, we remain responsible for ensuring that each of our clinical trials is conducted in accordance with the general investigational plan and protocols for the trial. Moreover, the FDA requires us to comply with

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requirements, commonly referred to as Good Clinical Practices, or GCPs, for conducting, recording and reporting the results of clinical trials to assure that data and reported results are credible and accurate and that the rights, integrity and confidentiality of trial participants are protected. The FDA enforces these GCPs through periodic inspections of trial sponsors, principal investigators, clinical trial sites and IRBs. If we or our third-party contractors fail to comply with applicable GCPs, the clinical data generated in our clinical trials may be deemed unreliable and the FDA may require us to perform additional clinical trials before approving our product candidates, which would delay the marketing approval process. We cannot be certain that, upon inspection, the FDA will determine that any of our clinical trials comply with GCPs. We are also required to register clinical trials and post the results of completed clinical trials on a government-sponsored database, ClinicalTrials.gov, within certain timeframes. Failure to do so can result in fines, adverse publicity and civil and criminal sanctions.

        Furthermore, the third parties conducting clinical trials on our behalf are not our employees, and except for remedies available to us under our agreements with such contractors, we cannot control whether or not they devote sufficient time, skill and resources to our ongoing development programs. These contractors may also have relationships with other commercial entities, including our competitors, for whom they may also be conducting clinical trials or other drug development activities, which could impede their ability to devote appropriate time to our clinical programs. If these third parties, including clinical investigators, do not successfully carry out their contractual duties, meet expected deadlines or conduct our clinical trials in accordance with regulatory requirements or our stated protocols, we may not be able to obtain, or may be delayed in obtaining, marketing approvals for our product candidates. If that occurs, we will not be able to, or may be delayed in our efforts to, successfully commercialize our product candidates. In such an event, our financial results and the commercial prospects for any product candidates that we seek to develop could be harmed, our costs could increase and our ability to generate revenues could be delayed, impaired or foreclosed.

Use of third parties to manufacture our product candidates may increase the risk that we will not have sufficient quantities of our product candidates, products, or necessary quantities at an acceptable cost.

        We do not own or operate manufacturing facilities for the production of clinical or commercial quantities of our product candidates, and we lack the resources and the capabilities to do so. As a result, we currently rely on third parties for supply of the active pharmaceutical ingredients, or API, in our product candidates. Our current strategy is to outsource all manufacturing of our product candidates and products to third parties.

        We currently engage third-party manufacturers to provide the API, and other third parties to provide services for the final drug product formulation of RA101495 that is being used in our clinical trials. Although we believe that there are several potential alternative manufacturers who could manufacture RA101495, we may incur added costs and delays in identifying and qualifying any such replacement. In addition, we have not yet concluded a commercial supply contract with any commercial manufacturer. There is no assurance that we will be able to timely secure needed supply arrangements on satisfactory terms, or at all. Our failure to secure these arrangements as needed could have a material adverse effect on our ability to complete the development of our product candidates or, to commercialize them, if approved. We may be unable to conclude agreements for commercial supply with third-party manufacturers, or may be unable to do so on acceptable terms. There may be difficulties in scaling up to commercial quantities and formulation of RA101495 and the costs of manufacturing could be prohibitive.

        Even if we are able to establish and maintain arrangements with third-party manufacturers, reliance on third-party manufacturers entails additional risks, including:

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        If we do not maintain our key manufacturing relationships, we may fail to find replacement manufacturers or develop our own manufacturing capabilities, which could delay or impair our ability to obtain regulatory approval for our products. If we do find replacement manufacturers, we may not be able to enter into agreements with them on terms and conditions favorable to us and there could be a substantial delay before new facilities could be qualified and registered with the FDA and other foreign regulatory authorities.

        Our lead product candidate may ultimately be regulated as a drug/device combination product. Third-party manufacturers may not be able to comply with the cGMP regulatory requirements applicable to drugs and drug/device combination products, including applicable provisions of the FDA's drug cGMP regulations, device cGMP requirements embodied in the Quality System Regulation, or QSR, or similar regulatory requirements outside the United States. Our failure, or the failure of our third-party manufacturers, to comply with applicable regulations could result in sanctions being imposed on us, including clinical holds, fines, injunctions, civil penalties, delays, suspension or withdrawal of approvals, seizures or voluntary recalls of product candidates, operating restrictions and criminal prosecutions, any of which could significantly affect supplies of our product candidates. The facilities used by our contract manufacturers to manufacture our product candidates must be evaluated by the FDA pursuant to inspections that will be conducted after we submit our NDA to the FDA. We do not control the manufacturing process of, and are completely dependent on, our contract manufacturing partners for compliance with cGMPs. If our contract manufacturers cannot successfully manufacture material that conforms to our specifications and the strict regulatory requirements of the FDA or others, we may not be able to secure and/or maintain regulatory approval for our product manufactured at these facilities. In addition, we have no control over the ability of our contract manufacturers to maintain adequate quality control, quality assurance and qualified personnel. If the FDA finds deficiencies or a comparable foreign regulatory authority does not approve these facilities for the manufacture of our product candidates or if it withdraws any such approval in the future, we may need to find alternative manufacturing facilities, which would significantly impact our ability to develop, obtain regulatory approval for or market our product candidates, if approved. Contract manufacturers may face manufacturing or quality control problems causing drug substance production and shipment delays or a situation where the contractor may not be able to maintain compliance with the applicable cGMP requirements. Any failure to comply with cGMP requirements or other FDA, EMA and comparable foreign regulatory requirements could adversely affect our clinical research activities and our ability to develop our product candidates and market our products following approval.

        The FDA and other foreign regulatory authorities require manufacturers to register manufacturing facilities. The FDA and corresponding foreign regulators also inspect these facilities to confirm compliance with cGMPs. Contract manufacturers may face manufacturing or quality control problems causing drug substance production and shipment delays or a situation where the contractor may not be able to maintain compliance with the applicable cGMP requirements. Any failure to comply with cGMP requirements or other FDA, EMA and comparable foreign regulatory requirements could adversely affect our clinical research activities and our ability to develop our product candidates and market our products following approval.

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If our third-party manufacturer of our product candidates is unable to increase the scale of its production of our product candidates, and/or increase the product yield of its manufacturing, then our costs to manufacture the product may increase and commercialization may be delayed.

        In order to produce sufficient quantities to meet the demand for clinical trials and, if approved, subsequent commercialization of RA101495 or any of our other product candidates in our pipeline or that we may develop, our third party manufacturer will be required to increase its production and optimize its manufacturing processes while maintaining the quality of the product. The transition to larger scale production could prove difficult. In addition, if our third party manufacturer is not able to optimize its manufacturing process to increase the product yield for our product candidates, or if it is unable to produce increased amounts of our product candidates while maintaining the quality of the product, then we may not be able to meet the demands of clinical trials or market demands, which could decrease our ability to generate profits and have a material adverse impact on our business and results of operation.

We may need to maintain licenses for active ingredients from third parties to develop and commercialize some of our product candidates, which could increase our development costs and delay our ability to commercialize those product candidates.

        Should we decide to use active pharmaceutical ingredients in any of our product candidates that are proprietary to one or more third parties, we would need to maintain licenses to those active ingredients from those third parties. If we are unable to gain or continue to access rights to these active ingredients prior to conducting preclinical toxicology studies intended to support clinical trials, we may need to develop alternate product candidates from these programs by either accessing or developing alternate active ingredients, resulting in increased development costs and delays in commercialization of these product candidates. If we are unable to gain or maintain continued access rights to the desired active ingredients on commercially reasonable terms or develop suitable alternate active ingredients, we may not be able to commercialize product candidates from these programs.

We enter into various contracts in the normal course of our business in which we indemnify the other party to the contract. In the event we have to perform under these indemnification provisions, it could have a material adverse effect on our business, financial condition and results of operations.

        In the normal course of business, we periodically enter into academic, commercial, service, collaboration, licensing, consulting and other agreements that contain indemnification provisions. With respect to our academic and other research agreements, we typically indemnify the institution and related parties from losses arising from claims relating to the products, processes or services made, used, sold or performed pursuant to the agreements for which we have secured licenses, and from claims arising from our or our sublicensees' exercise of rights under the agreement. With respect to our commercial agreements, we indemnify our vendors from any third-party product liability claims that could result from the production, use or consumption of the product, as well as for alleged infringements of any patent or other intellectual property right by a third party.

        Should our obligation under an indemnification provision exceed applicable insurance coverage or if we were denied insurance coverage, our business, financial condition and results of operations could be adversely affected. Similarly, if we are relying on a collaborator to indemnify us and the collaborator is denied insurance coverage or the indemnification obligation exceeds the applicable insurance coverage and does not have other assets available to indemnify us, our business, financial condition and results of operations could be adversely affected.

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We expect to seek to establish collaborations and, if we are not able to establish them on commercially reasonable terms, we may have to alter our development and commercialization plans.

        We expect to seek one or more collaborators for the development and commercialization of one or more of our product candidates. For example, we started collaborating with Merck in 2013. Likely collaborators may include large and mid-size pharmaceutical companies, regional and national pharmaceutical companies and biotechnology companies. In addition, if we are able to obtain marketing approval for product candidates from foreign regulatory authorities, we intend to enter into strategic relationships with international biotechnology or pharmaceutical companies for the commercialization of such product candidates outside of the United States.

        We face significant competition in seeking appropriate collaborators. Whether we reach a definitive agreement for a collaboration will depend, among other things, upon our assessment of the collaborator's resources and expertise, the terms and conditions of the proposed collaboration and the proposed collaborator's evaluation of a number of factors. Those factors may include the potential differentiation of our product candidate from competing product candidates, design or results of clinical trials, the likelihood of approval by the FDA, the EMA or comparable foreign regulatory authorities and the regulatory pathway for any such approval, the potential market for the product candidate, the costs and complexities of manufacturing and delivering the product to patients and the potential of competing products. The collaborator may also consider alternative product candidates or technologies for similar indications that may be available for collaboration and whether such a collaboration could be more attractive than the one with us for our product candidate. If we elect to increase our expenditures to fund development or commercialization activities on our own, we may need to obtain additional capital, which may not be available to us on acceptable terms or at all. If we do not have sufficient funds, we may not be able to further develop our product candidates or bring them to market and generate product revenue.

        Collaborations are complex and time-consuming to negotiate and document. Further, there have been a significant number of recent business combinations among large pharmaceutical companies that have resulted in a reduced number of potential future collaborators. Any collaboration agreements that we enter into in the future may contain restrictions on our ability to enter into potential collaborations or to otherwise develop specified product candidates. We may not be able to negotiate collaborations on a timely basis, on acceptable terms, or at all. If we are unable to do so, we may have to curtail the development of the product candidate for which we are seeking to collaborate, reduce or delay its development program or one or more of our other development programs, delay its potential commercialization or reduce the scope of any sales or marketing activities, or increase our expenditures and undertake development or commercialization activities at our own expense.

If we enter into collaborations with third parties for the development and commercialization of our product candidates, our prospects with respect to those product candidates will depend in significant part on the success of those collaborations.

        We expect to enter into additional collaborations for the development and commercialization of certain of our product candidates. If we enter into such collaborations, we will have limited control over the amount and timing of resources that our collaborators will dedicate to the development or commercialization of our product candidates. Our ability to generate revenues from these arrangements will depend on any future collaborators' abilities to successfully perform the functions assigned to them in these arrangements. In addition, any future collaborators may have the right to abandon research or development projects and terminate applicable agreements, including funding obligations, prior to or upon the expiration of the agreed upon terms.

        Collaborations involving our product candidates pose a number of risks, including the following:

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        Collaboration agreements may not lead to development or commercialization of product candidates in the most efficient manner or at all. If any future collaborator of ours is involved in a business combination, it could decide to delay, diminish or terminate the development or commercialization of any product candidate licensed to it by us.

Risks Related to Our Intellectual Property

Our success depends on our ability to protect our intellectual property and proprietary technology.

        Our success depends in large part on our ability to obtain and maintain patent protection and trade secret protection in the United States and other countries with respect to our proprietary product candidates. If we do not adequately protect our intellectual property rights, competitors may be able to erode, negate or preempt any competitive advantage we may have, which could harm our business and ability to achieve profitability. To protect our proprietary position, we file patent applications in the United States and abroad related to our novel product candidates that are important to our business; we also license or purchase patent applications filed by others. The patent application and approval process is expensive and time-consuming. We may not be able to file and prosecute all necessary or desirable patent applications at a reasonable cost or in a timely manner.

        Agreements through which we license patent rights may not give us control over patent prosecution or maintenance, so that we may not be able to control which claims or arguments are presented and may not be able to secure, maintain, or successfully enforce necessary or desirable patent protection from those patent rights. We have not had and do not have primary control over patent prosecution and maintenance for certain of the patents and patent applications we license, and

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therefore cannot guarantee that these patents and applications will be prosecuted or maintained in a manner consistent with the best interests of our business. We cannot be certain that patent prosecution and maintenance activities by our licensors have been or will be conducted in compliance with applicable laws and regulations or will result in valid and enforceable patents.

        If the scope of the patent protection we or our licensors obtain is not sufficiently broad, we may not be able to prevent others from developing and commercialize technology and products similar or identical to ours. The degree of patent protection we require to successfully compete in the marketplace may be unavailable or severely limited in some cases and may not adequately protect our rights or permit us to gain or keep any competitive advantage. We cannot provide any assurances that any of our licensed patents have, or that any of our pending licensed patent applications that mature into issued patents will include, claims with a scope sufficient to protect our proprietary platform or otherwise provide any competitive advantage, nor can we assure you that our licenses are or will remain in force. In addition, the laws of foreign countries may not protect our rights to the same extent as the laws of the United States. Furthermore, patents have a limited lifespan. In the United States, the natural expiration of a patent is generally twenty years after it is filed. Various extensions may be available; however, the life of a patent, and the protection it affords, is limited. Given the amount of time required for the development, testing and regulatory review of new product candidates, patents protecting such candidates might expire before or shortly after such candidates are commercialized. As a result, our licensed patent portfolio may not provide us with adequate and continuing patent protection sufficient to exclude others from commercializing products similar to our product candidates. In addition, the patent portfolio licensed to us is, or may be, licensed to third parties, such as outside our field, and such third parties may have certain enforcement rights. Thus, patents licensed to us could be put at risk of being invalidated or interpreted narrowly in litigation filed by or against another licensee or in administrative proceedings brought by or against another licensee in response to such litigation or for other reasons.

        Even if they are unchallenged, our licensed patents and pending patent applications, if issued, may not provide us with any meaningful protection or prevent competitors from designing around our patent claims to circumvent our licensed patents by developing similar or alternative technologies or therapeutics in a non-infringing manner. For example, a third party may develop a competitive therapy that provides benefits similar to one or more of our product candidates but that uses a vector or an expression construct that falls outside the scope of our patent protection or license rights. If the patent protection provided by the patents and patent applications we hold or pursue with respect to our product candidates is not sufficiently broad to impede such competition, our ability to successfully commercialize our product candidates could be negatively affected, which would harm our business. Although currently all of our patents and patent applications are in-licensed, similar risks would apply to any patents or patent applications that we may own or in-license in the future.

        We, or any future partners, collaborators, or licensees, may fail to identify patentable aspects of inventions made in the course of development and commercialization activities before it is too late to obtain patent protection on them. Therefore, we may miss potential opportunities to strengthen our patent position.

        It is possible that defects of form in the preparation or filing of our patents or patent applications may exist, or may arise in the future, for example with respect to proper priority claims, inventorship, claim scope, or requests for patent term adjustments. If we or our partners, collaborators, licensees, or licensors, whether current or future, fail to establish, maintain or protect such patents and other intellectual property rights, such rights may be reduced or eliminated. If our partners, collaborators, licensees, or licensors, are not fully cooperative or disagree with us as to the prosecution, maintenance or enforcement of any patent rights, such patent rights could be compromised. If there are material defects in the form, preparation, prosecution, or enforcement of our patents or patent applications, such patents may be invalid and/or unenforceable, and such applications may never result in valid,

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enforceable patents. Any of these outcomes could impair our ability to prevent competition from third parties, which may have an adverse impact on our business.

        The patent position of biotechnology and pharmaceutical companies generally is highly uncertain. No consistent policy regarding the breadth of claims allowed in biotechnology and pharmaceutical patents has emerged to date in the United States or in many foreign jurisdictions. In addition, the determination of patent rights with respect to pharmaceutical compounds commonly involves complex legal and factual questions, which has in recent years been the subject of much litigation. As a result, the issuance, scope, validity, enforceability and commercial value of our patent rights are highly uncertain.

        Pending patent applications cannot be enforced against third parties practicing the technology claimed in such applications unless and until a patent issues from such applications. Assuming the other requirements for patentability are met, currently, the first to file a patent application is generally entitled to the patent. However, prior to March 16, 2013, in the United States, the first to invent was entitled to the patent. Publications of discoveries in the scientific literature often lag behind the actual discoveries, and patent applications in the United States and other jurisdictions are not published until 18 months after filing, or in some cases not at all. Therefore, we cannot be certain that we were the first to make the inventions claimed in our patents or pending patent applications, or that we were the first to file for patent protection of such inventions. Similarly, we cannot be certain that parties from whom we do or may license or purchase patent rights were the first to make relevant claimed inventions, or were the first to file for patent protection for them. If third parties have filed patent applications on inventions claimed in our patents or applications on or before March 15, 2013, an interference proceeding in the United States can be initiated by such third parties to determine who was the first to invent any of the subject matter covered by the patent claims of our applications. If third parties have filed such applications after March 15, 2013, a derivation proceeding in the United States can be initiated by such third parties to determine whether our invention was derived from theirs.

        Moreover, because the issuance of a patent is not conclusive as to its inventorship, scope, validity or enforceability, our patents or pending patent applications may be challenged in the courts or patent offices in the United States and abroad. There is no assurance that all of the potentially relevant prior art relating to our patents and patent applications has been found. If such prior art exists, it may be used to invalidate a patent, or may prevent a patent from issuing from a pending patent application. For example, such patent filings may be subject to a third-party preissuance submission of prior art to the U.S. Patent and Trademark Office, or USPTO, to other patent offices around the world. Alternately or additionally, we may become involved in post-grant review procedures, oppositions, derivations, proceedings, reexaminations, inter partes review or interference proceedings, in the United States or elsewhere, challenging patents or patent applications in which we have rights, including patents on which we rely to protect our business. An adverse determination in any such challenges may result in loss of exclusivity or in patent claims being narrowed, invalidated or held unenforceable, in whole or in part, which could limit our ability to stop others from using or commercializing similar or identical technology and products, or limit the duration of the patent protection of our technology and products. In addition, given the amount of time required for the development, testing and regulatory review of new product candidates, patents protecting such candidates might expire before or shortly after such candidates are commercialized.

        Pending and future patent applications may not result in patents being issued that protect our business, in whole or in part, or which effectively prevent others from commercializing competitive products. Changes in either the patent laws or interpretation of the patent laws in the United States and other countries may diminish the value of our patents or narrow the scope of our patent protection. In addition, the laws of foreign countries may not protect our rights to the same extent or in the same manner as the laws of the United States. For example, patent laws in various jurisdictions,

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including significant commercial markets such as Europe, restrict the patentability of methods of treatment of the human body more than United States law does.

        The patent application process is subject to numerous risks and uncertainties, and there can be no assurance that we or any of our future development partners will be successful in protecting our product candidates by obtaining and defending patents. These risks and uncertainties include the following:

        Issued patents that we have or may obtain or license may not provide us with any meaningful protection, prevent competitors from competing with us or otherwise provide us with any competitive advantage. Our competitors may be able to circumvent our patents by developing similar or alternative technologies or products in a non-infringing manner. Our competitors may also seek approval to market their own products similar to or otherwise competitive with our products. Alternatively, our competitors may seek to market generic versions of any approved products by submitting ANDAs to the FDA in which they claim that patents owned or licensed by us are invalid, unenforceable or not infringed. In these circumstances, we may need to defend or assert our patents, or both, including by filing lawsuits alleging patent infringement. In any of these types of proceedings, a court or other agency with jurisdiction may find our patents invalid or unenforceable, or that our competitors are competing in a non-infringing manner. Thus, even if we have valid and enforceable patents, these patents still may not provide protection against competing products or processes sufficient to achieve our business objectives.

        Pursuant to the terms of some of our license agreements with third parties, some of our third party licensors have the right, but not the obligation in certain circumstances to control enforcement of our licensed patents or defense of any claims asserting the invalidity of these patents. Even if we are permitted to pursue such enforcement or defense, we will require the cooperation of our licensors, and cannot guarantee that we would receive it and on what terms. We cannot be certain that our licensors will allocate sufficient resources or prioritize their or our enforcement of such patents or defense of such claims to protect our interests in the licensed patents. If we cannot obtain patent protection, or

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enforce existing or future patents against third parties, our competitive position and our financial condition could suffer.

        In addition, we rely on the protection of our trade secrets and proprietary know-how. Although we have taken steps to protect our trade secrets and unpatented know-how, including entering into confidentiality agreements with third parties, and confidential information and inventions agreements with employees, consultants and advisors, we cannot provide any assurances that all such agreements have been duly executed, and third parties may still obtain this information or may come upon this or similar information independently. Additionally, if the steps taken to maintain our trade secrets are deemed inadequate, we may have insufficient recourse against third parties for misappropriating its trade secrets. If any of these events occurs or if we otherwise lose protection for our trade secrets or proprietary know-how, our business may be harmed.

It is difficult and costly to protect our intellectual property and our proprietary technologies, and we may not be able to ensure their protection.

        Our commercial success will depend in part on obtaining and maintaining patent protection and trade secret protection for the use, formulation and structure of our products and product candidates, the methods used to manufacture them, the related therapeutic targets and associated methods of treatment as well as on successfully defending these patents against potential third-party challenges. Our ability to protect our products and product candidates from unauthorized making, using, selling, offering to sell or importing by third parties is dependent on the extent to which we have rights under valid and enforceable patents that cover these activities.

        The patent positions of pharmaceutical, biotechnology and other life sciences companies can be highly uncertain and involve complex legal and factual questions for which important legal principles remain unresolved. Changes in either the patent laws or in interpretations of patent laws in the United States and other countries may diminish the value of our intellectual property. Further, the determination that a patent application or patent claim meets all of the requirements for patentability is a subjective determination based on the application of law and jurisprudence. The ultimate determination by the USPTO or by a court or other trier of fact in the United States, or corresponding foreign national patent offices or courts, on whether a claim meets all requirements of patentability cannot be assured. For example, our C5 inhibitor portfolio consists of three families of patent applications that we own directed to C5 inhibitors and related methods of use. Although we have conducted searches for third-party publications, patents and other information that may affect the patentability of claims in our various patent applications and patents, we cannot be certain that all relevant information has been identified. Accordingly, we cannot predict the breadth of claims that may be allowed or enforced in our patents or patent applications, in our licensed patents or patent applications or in third-party patents.

        We cannot provide assurances that any of our patent applications will be found to be patentable, including over our own prior art patents, or will issue as patents. Neither can we make assurances as to the scope of any claims that may issue from our pending and future patent applications nor to the outcome of any proceedings by any potential third parties that could challenge the patentability, validity or enforceability of our patents and patent applications in the United States or foreign jurisdictions. Any such challenge, if successful, could limit patent protection for our products and product candidates and/or materially harm our business.

        The degree of future protection for our proprietary rights is uncertain because legal means afford only limited protection and may not adequately protect our rights or permit us to gain or keep our competitive advantage. For example:

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        In addition, to the extent that we are unable to obtain and maintain patent protection for one of our products or product candidates or in the event that such patent protection expires, it may no longer be cost-effective to extend our portfolio by pursuing additional development of a product or product candidate for follow-on indications.

        We also may rely on trade secrets to protect our technologies or products, especially where we do not believe patent protection is appropriate or obtainable. For example, the patents underlying our proprietary peptide chemistry technology, which we license from third parties on a non-exclusive basis in some cases, expire by 2022. As a result, we anticipate that trade secrets will serve as the primary protection for the know-how behind our proprietary platform. Also, we cannot provide any assurances that any of our licensed patents have claims with a scope sufficient to protect our proprietary platform or otherwise provide any competitive advantage, nor can we assure you that our licenses are or will remain in full force or effect, in which case we would similarly rely on trade secrets. However, trade secrets are difficult to protect. Although we use reasonable efforts to protect our trade secrets, our employees, consultants, contractors, outside scientific collaborators and other advisers may unintentionally or willfully disclose our information to competitors. Enforcing a claim that a third-party entity illegally obtained and is using any of our trade secrets is expensive and time-consuming, and the outcome is unpredictable. In addition, courts outside the United States are sometimes less willing to protect trade secrets. Moreover, our competitors may independently develop equivalent knowledge, methods and know-how. Notably, proprietary technology protected by a trade secret does not preempt the patent of independently developed equivalent technology, even if such equivalent technology is invented subsequent to the technology protected by a trade secret.

Obtaining and maintaining patent protection depends on compliance with various procedural, document submission, fee payment and other requirements imposed by governmental patent agencies, and our patent protection could be reduced or eliminated for non-compliance with these requirements.

        Periodic maintenance fees, renewal fees, annuity fees and various other governmental fees on patents and applications are required to be paid to the USPTO and various governmental patent agencies outside of the United States in several stages over the lifetime of the patents and applications. The USPTO and various non-U.S. governmental patent agencies require compliance with a number of procedural, documentary, fee payment and other similar provisions during the patent application process and after a patent has issued. There are situations in which non-compliance can result in abandonment or lapse of the patent or patent application, resulting in partial or complete loss of patent rights in the relevant jurisdiction. Under the terms of some of our licenses, we do not have the ability to maintain or prosecute patents in the portfolio, and must therefore rely on third parties to comply with these requirements.

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Patent terms may be inadequate to protect our competitive position on our products for an adequate amount of time.

        Given the amount of time required for the development, testing and regulatory review of new product candidates, patents protecting such candidates might expire before or shortly after such candidates are commercialized. We expect to seek extensions of patent terms in the United States and, if available, in other countries where we are prosecuting patents. In the United States, the Drug Price Competition and Patent Term Restoration Act of 1984 permits a patent term extension of up to five years beyond the normal expiration of the patent, which is limited to the approved indication (or any additional indications approved during the period of extension). However, the applicable authorities, including the FDA and the USPTO in the United States, and any equivalent regulatory authority in other countries, may not agree with our assessment of whether such extensions are available, and may refuse to grant extensions to our patents, or may grant more limited extensions than we request. If this occurs, our competitors may be able to take advantage of our investment in development and clinical trials by referencing our clinical and preclinical data and launch their product earlier than might otherwise be the case.

Changes to the patent law in the United States and other jurisdictions could diminish the value of patents in general, thereby impairing our ability to protect our products.

        As is the case with other biopharmaceutical companies, our success is heavily dependent on intellectual property, particularly patents. Obtaining and enforcing patents in the biopharmaceutical industry involves both technological and legal complexity and is therefore costly, time consuming and inherently uncertain. Recent patent reform legislation in the United States, including the Leahy-Smith America Invents Act, or the America Invents Act, could increase those uncertainties and costs. The America Invents Act was signed into law on September 16, 2011, and many of the substantive changes became effective on March 16, 2013. The America Invents Act reforms United States patent law in part by changing the U.S. patent system from a "first to invent" system to a "first inventor to file" system , expanding the definition of prior art, and developing a post-grant review system. This legislation changes United States patent law in a way that may weaken our ability to obtain patent protection in the United States for those applications filed after March 16, 2013.

        Further, the America Invents Act created new procedures to challenge the validity of issued patents in the United States, including post-grant review and inter partes review proceedings, which some third parties have been using to cause the cancellation of selected or all claims of issued patents of competitors. For a patent with an effective filing date of March 16, 2013 or later, a petition for post-grant review can be filed by a third party in a nine month window from issuance of the patent. A petition for inter partes review can be filed immediately following the issuance of a patent if the patent has an effective filing date prior to March 16, 2013. A petition for inter partes review can be filed after the nine month period for filing a post-grant review petition has expired for a patent with an effective filing date of March 16, 2013 or later. Post-grant review proceedings can be brought on any ground of invalidity, whereas inter partes review proceedings can only raise an invalidity challenge based on published prior art and patents. These adversarial actions at the USPTO review patent claims without the presumption of validity afforded to U.S. patents in lawsuits in U.S. federal courts, and use a lower burden of proof than used in litigation in U.S. federal courts. Therefore, it is generally considered easier for a competitor or third party to have a U.S. patent invalidated in a USPTO post-grant review or inter partes review proceeding than invalidated in a litigation in a U.S. federal court. If any of our patents are challenged by a third party in such a USPTO proceeding, there is no guarantee that we or our licensors or collaborators will be successful in defending the patent, which would result in a loss of the challenged patent right to us.

        In addition, recent court rulings in cases such as Association for Molecular Pathology v. Myriad Genetics, Inc., BRCA1- & BRCA2-Based Hereditary Cancer Test Patent Litigation, and Promega Corp. v.

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Life Technologies Corp. have narrowed the scope of patent protection available in certain circumstances and weakened the rights of patent owners in certain situations. In addition to increasing uncertainty with regard to our ability to obtain patents in the future, this combination of events has created uncertainty with respect to the value of patents once obtained. Depending on future actions by the U.S. Congress, the U.S. courts, the USPTO and the relevant law-making bodies in other countries, the laws and regulations governing patents could change in unpredictable ways that would weaken our ability to obtain new patents or to enforce our existing patents and patents that we might obtain in the future.

We may not be able to enforce our intellectual property rights throughout the world.

        Filing, prosecuting, enforcing and defending patents on our product candidates in all countries throughout the world would be prohibitively expensive, and our intellectual property rights in some countries outside the United States can be less extensive than those in the United States. The requirements for patentability may differ in certain countries, particularly in developing countries; thus, even in countries where we do pursue patent protection, there can be no assurance that any patents will issue with claims that cover our products.

        Moreover, our ability to protect and enforce our intellectual property rights may be adversely affected by unforeseen changes in foreign intellectual property laws. Additionally, laws of some countries outside of the United States and Europe do not afford intellectual property protection to the same extent as the laws of the United States and Europe. Many companies have encountered significant problems in protecting and defending intellectual property rights in certain foreign jurisdictions. The legal systems of some countries, including India, China and other developing countries, do not favor the enforcement of patents and other intellectual property rights. This could make it difficult for us to stop the infringement of our patents or the misappropriation of our other intellectual property rights. For example, many foreign countries have compulsory licensing laws under which a patent owner must grant licenses to third parties. Consequently, we may not be able to prevent third parties from practicing our inventions in certain countries outside the United States and Europe. Competitors may use our technologies in jurisdictions where we have not obtained patent protection to develop and market their own products and, further, may export otherwise infringing products to territories where we have patent protection, if our ability to enforce our patents to stop infringing activities is inadequate. These products may compete with our products, and our patents or other intellectual property rights may not be effective or sufficient to prevent them from competing.

        Agreements through which we license patent rights may not give us sufficient rights to permit us to pursue enforcement of our licensed patents or defense of any claims asserting the invalidity of these patents (or control of enforcement or defense) of such patent rights in all relevant jurisdictions as requirements may vary.

        Proceedings to enforce our patent rights in foreign jurisdictions, whether or not successful, could result in substantial costs and divert our efforts and resources from other aspects of our business. Moreover, such proceedings could put our patents at risk of being invalidated or interpreted narrowly and our patent applications at risk of not issuing and could provoke third parties to assert claims against us. We may not prevail in any lawsuits that we initiate and the damages or other remedies awarded, if any, may not be commercially meaningful. Furthermore, while we intend to protect our intellectual property rights in major markets for our products, we cannot ensure that we will be able to initiate or maintain similar efforts in all jurisdictions in which we may wish to market our products. Accordingly, our efforts to protect our intellectual property rights in such countries may be inadequate.

Others may claim an ownership interest in our intellectual property which could expose it to litigation and have a significant adverse effect on its prospects.

        A third party may claim an ownership interest in one or more of our or our licensors' patents or other proprietary or intellectual property rights. A third party could bring legal actions against us and

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seek monetary damages and/or enjoin clinical testing, manufacturing and marketing of the affected product or products. While we are presently unaware of any claims or assertions by third-parties with respect to our patents or other intellectual property, we cannot guarantee that a third-party will not assert a claim or an interest in any of such patents or intellectual property. If we become involved in any litigation, it could consume a substantial portion of our resources, and cause a significant diversion of effort by our technical and management personnel. If any of these actions are successful, in addition to any potential liability for damages, we could be required to obtain a license to continue to manufacture or market the affected product, in which case we may be required to pay substantial royalties or grant cross-licenses to our patents. We cannot, however, assure you that any such license will be available on acceptable terms, if at all. Ultimately, we could be prevented from commercializing a product, or be forced to cease some aspect of our business operations as a result of claims of patent infringement or violation of other intellectual property rights, Further, the outcome of intellectual property litigation is subject to uncertainties that cannot be adequately quantified in advance, including the demeanor and credibility of witnesses and the identity of any adverse party. This is especially true in intellectual property cases that may turn on the testimony of experts as to technical facts upon which experts may reasonably disagree.

If we are sued for infringing intellectual property rights of third parties, such litigation could be costly and time consuming and could prevent or delay us from developing or commercializing our product candidates.

        Our commercial success depends, in part, on our ability to develop, manufacture, market and sell our product candidates without infringing the intellectual property and other proprietary rights of third parties. Third parties may have U.S. and non-U.S. issued patents and pending patent applications relating to compounds, methods of manufacturing compounds and/or methods of use for the treatment of the disease indications for which we are developing our product candidates or relating to the use of complement inhibition that may cover our product candidates or approach to complement inhibition. If any third-party patents or patent applications are found to cover our product candidates or their methods of use or manufacture or our approach to complement inhibition, we may not be free to manufacture or market our product candidates as planned without obtaining a license, which may not be available on commercially reasonable terms, or at all.

        There is a substantial amount of intellectual property litigation in the biotechnology and pharmaceutical industries, and we may become party to, or threatened with, litigation or other adversarial proceedings regarding intellectual property rights with respect to our products candidates, including interference and post-grant proceedings before the USPTO. There may be third-party patents or patent applications with claims to materials, formulations, methods of manufacture or methods for treatment related to the composition, use or manufacture of our product candidates. We cannot guarantee that any of our patent searches or analyses including, but not limited to, the identification of relevant patents, the scope of patent claims or the expiration of relevant patents are complete or thorough, nor can we be certain that we have identified each and every patent and pending application in the United States and abroad that is relevant to or necessary for the commercialization of our product candidates in any jurisdiction. Because patent applications can take many years to issue, there may be currently pending patent applications which may later result in issued patents that our product candidates may be accused of infringing. In addition, third parties may obtain patents in the future and claim that use of our technologies infringes upon these patents. Accordingly, third parties may assert infringement claims against us based intellectual property rights that exist now or arise in the future. The outcome of intellectual property litigation is subject to uncertainties that cannot be adequately quantified in advance. The pharmaceutical and biotechnology industries have produced a significant number of patents, and it may not always be clear to industry participants, including us, which patents cover various types of products or methods of use or manufacture. The scope of protection afforded by a patent is subject to interpretation by the courts, and the interpretation is not always uniform. If we were sued for patent infringement, we would need to demonstrate that our product candidates,

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products or methods either do not infringe the patent claims of the relevant patent or that the patent claims are invalid or unenforceable, and we may not be able to do this. Proving invalidity is difficult. For example, in the United States, proving invalidity requires a showing of clear and convincing evidence to overcome the presumption of validity enjoyed by issued patents. Even if we are successful in these proceedings, we may incur substantial costs and the time and attention of our management and scientific personnel could be diverted in pursuing these proceedings, which could significantly harm our business and operating results. In addition, we may not have sufficient resources to bring these actions to a successful conclusion.

        If we are found to infringe a third party's intellectual property rights, we could be forced, including by court order, to cease developing, manufacturing or commercializing the infringing product candidate or product. Alternatively, we may be required to obtain a license from such third party in order to use the infringing technology and continue developing, manufacturing or marketing the infringing product candidate or product. However, we may not be able to obtain any required license on commercially reasonable terms or at all. Even if we were able to obtain a license, it could be non-exclusive, thereby giving our competitors access to the same technologies licensed to us; alternatively or additionally it could include terms that impede or destroy our ability to compete successfully in the commercial marketplace. In addition, we could be found liable for monetary damages, including treble damages and attorneys' fees if we are found to have willfully infringed a patent. A finding of infringement could prevent us from commercializing our product candidates or force us to cease some of our business operations, which could harm our business. Claims that we have misappropriated the confidential information or trade secrets of third parties could have a similar negative impact on our business.

We may be subject to claims by third parties asserting that our employees or we have misappropriated their intellectual property, or claiming ownership of what we regard as our own intellectual property.

        Many of our current and former employees and our licensors' current and former employees, including our senior management, were previously employed at universities or at other biotechnology or pharmaceutical companies, including some which may be competitors or potential competitors. Some of these employees, including each member of our senior management, executed proprietary rights, non-disclosure and non-competition agreements, or similar agreements, in connection with such previous employment. Although we try to ensure that our employees do not use the proprietary information or know-how of others in their work for us, we may be subject to claims that we or these employees have used or disclosed intellectual property, including trade secrets or other proprietary information, of any such third party. Litigation may be necessary to defend against such claims. If we fail in defending any such claims, in addition to paying monetary damages, we may lose valuable intellectual property rights or personnel or sustain damages. Such intellectual property rights could be awarded to a third party, and we could be required to obtain a license from such third party to commercialize our technology or products. Such a license may not be available on commercially reasonable terms or at all. Even if we are successful in defending against such claims, litigation could result in substantial costs and be a distraction to management.

        In addition, while we typically require our employees, consultants and contractors who may be involved in the development of intellectual property to execute agreements assigning such intellectual property to us, we may be unsuccessful in executing such an agreement with each party who in fact develops intellectual property that we regard as our own, which may result in claims by or against us related to the ownership of such intellectual property. If we fail in prosecuting or defending any such claims, in addition to paying monetary damages, we may lose valuable intellectual property rights. Even if we are successful in prosecuting or defending against such claims, litigation could result in substantial costs and be a distraction to our senior management and scientific personnel.

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We may become involved in lawsuits to protect or enforce our patents or other intellectual property, which could be expensive, time consuming and unsuccessful.

        Competitors may infringe our patents, trademarks, copyrights or other intellectual property. To counter infringement or unauthorized use, we may be required to file infringement claims, which can be expensive and time consuming and divert the time and attention of our management and scientific personnel. Any claims we assert against perceived infringers could provoke these parties to assert counterclaims against us alleging that we infringe their patents, in addition to counterclaims asserting that our patents are invalid or unenforceable, or both. In any patent infringement proceeding, there is a risk that a court will decide that a patent of ours is invalid or unenforceable, in whole or in part, and that we do not have the right to stop the other party from using the invention at issue. There is also a risk that, even if the validity of such patents is upheld, the court will construe the patent's claims narrowly or decide that we do not have the right to stop the other party from using the invention at issue on the grounds that our patent claims do not cover the invention. An adverse outcome in a litigation or proceeding involving one or more of our patents could limit our ability to assert those patents against those parties or other competitors, and may curtail or preclude our ability to exclude third parties from making and selling similar or competitive products. Similarly, if we assert trademark infringement claims, a court may determine that the marks we have asserted are invalid or unenforceable, or that the party against whom we have asserted trademark infringement has superior rights to the marks in question. In this case, we could ultimately be forced to cease use of such trademarks.

        Even if we establish infringement, the court may decide not to grant an injunction against further infringing activity and instead award only monetary damages, which may or may not be an adequate remedy. Furthermore, because of the substantial amount of discovery required in connection with intellectual property litigation, there is a risk that some of our confidential information could be compromised by disclosure during litigation. There could also be public announcements of the results of hearings, motions or other interim proceedings or developments. If securities analysts or investors perceive these results to be negative, it could adversely affect the price of shares of our common stock. Moreover, there can be no assurance that we will have sufficient financial or other resources to file and pursue such infringement claims, which typically last for years before they are concluded. Even if we ultimately prevail in such claims, the monetary cost of such litigation and the diversion of the attention of our management and scientific personnel could outweigh any benefit we receive as a result of the proceedings.

        Additionally, for certain of our in-licensed patent rights, we do not have the right to bring suit for infringement and must rely on third parties to enforce these rights for us. If we cannot or choose not to take action against those we believe infringe our intellectual property rights, we may have difficulty competing in certain markets where such potential infringers conduct their business, and our commercialization efforts may suffer as a result.

If we fail to comply with our obligations under our existing and any future intellectual property licenses with third parties, we could lose license rights that are important to our business.

        We are a party to a collaboration and license agreement with Merck Sharp & Dohme Corp., under which we license patent rights relating to peptides that modulate the activity of a Merck-designated non-complement cardiovascular product candidate. We are party to several other license agreements, under which we license patent rights related to our proprietary technology and other product candidates. We may enter into additional license agreements in the future. Our license agreement with Merck imposes, and we expect that future license agreements will impose, various diligence, milestone payment, royalty, insurance and other obligations on us. If we fail to comply with our obligations under these licenses, our licensors may have the right to terminate these license agreements, in which event we might not be able to market any product that is covered by these agreements, or our licensors may

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convert the license to a non-exclusive license, which could negatively impact the value of the product candidate being developed under the license agreement. Termination of these license agreements or reduction or elimination of our licensed rights may also result in our having to negotiate new or reinstated licenses with less favorable terms.

If we are unable to protect the confidentiality of our trade secrets, the value of our technology could be negatively impacted and our business would be harmed.

        In addition to the protection afforded by patents, we also rely on trade secret protection for certain aspects of our intellectual property. For example, the patents underlying our proprietary peptide chemistry technology expire by 2022. As a result, we anticipate that we will rely on trade secrets as the primary protection for the know-how behind our proprietary platform. We seek to protect these trade secrets, in part, by entering into non-disclosure and confidentiality agreements with parties who have access to them, such as our employees, consultants, independent contractors, advisors, contract manufacturers, suppliers and other third parties. We also enter into confidentiality and invention or patent assignment agreements with employees and certain consultants. Any party with whom we have executed such an agreement may breach that agreement and disclose our proprietary information, including our trade secrets, and we may not be able to obtain adequate remedies for such breaches. Enforcing a claim that a party illegally disclosed or misappropriated a trade secret is difficult, expensive and time-consuming, and the outcome is unpredictable. Additionally, if the steps taken to maintain our trade secrets are deemed inadequate, we may have insufficient recourse against third parties for misappropriating the trade secret. Further, if any of our trade secrets were to be lawfully obtained or independently developed by a competitor, we would have no right to prevent such third party, or those to whom they communicate such technology or information, from using that technology or information to compete with us. If any of our trade secrets were to be disclosed to or independently developed by a competitor, our business and competitive position could be harmed.

If our trademarks and trade names are not adequately protected, then we may not be able to build name recognition in our marks of interest and our business may be adversely affected.

        Our trademarks or trade names may be challenged, infringed, circumvented or declared generic or determined to be infringing on other marks. We rely on both registration and common law protection for our trademarks. We may not be able to protect our rights to these trademarks and trade names or may be forced to stop using these names, which we need for name recognition by potential partners or customers in our markets of interest. During trademark registration proceedings, we may receive rejections. Although we would be given an opportunity to respond to those rejections, we may be unable to overcome such rejections. In addition, in the USPTO and in comparable agencies in many foreign jurisdictions, third parties are given an opportunity to oppose pending trademark applications and to seek to cancel registered trademarks. Opposition or cancellation proceedings may be filed against our trademarks, and our trademarks may not survive such proceedings. If we are unable to establish name recognition based on our trademarks and trade names, we may not be able to compete effectively and our business may be adversely affected.

Risks Related to Employee Matters and Managing Growth

We only have a limited number of employees to manage and operate our business.

        As of June 30, 2016, we had 40 full-time or part-time employees. Our focus on the development of RA101495 requires us to optimize cash utilization and to manage and operate our business in a highly efficient manner. We cannot assure you that we will be able to hire and/or retain adequate staffing levels to develop RA101495 or run our operations and/or to accomplish all of the objectives that we otherwise would seek to accomplish.

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Cyber-attacks or other failures in telecommunications or information technology systems could result in information theft, data corruption and significant disruption of our business operations.

        We utilize information technology, or IT, systems and networks to process, transmit and store electronic information in connection with our business activities. As use of digital technologies has increased, cyber incidents, including deliberate attacks and attempts to gain unauthorized access to computer systems and networks, have increased in frequency and sophistication. These threats pose a risk to the security of our systems and networks, the confidentiality and the availability and integrity of our data. There can be no assurance that we will be successful in preventing cyber-attacks or successfully mitigating their effects. Similarly, there can be no assurance that our collaborators, CROs, third-party logistics providers, distributors and other contractors and consultants will be successful in protecting our clinical and other data that is stored on their systems. Any cyber-attack or destruction or loss of data could have a material adverse effect on our business and prospects. In addition, we may suffer reputational harm or face litigation or adverse regulatory action as a result of cyber-attacks or other data security breaches and may incur significant additional expense to implement further data protection measures.

We depend heavily on our executive officers, directors, and principal consultants and the loss of their services would materially harm our business.

        Our success depends, and will likely continue to depend, upon our ability to hire, retain the services of our current executive officers, directors, principal consultants and others. In addition, we have established relationships with universities and research institutions which have historically provided, and continue to provide, us with access to research laboratories, clinical trials, facilities and patients. Our ability to compete in the biotechnology and pharmaceuticals industries depends upon our ability to attract and retain highly qualified managerial, scientific and medical personnel.

        Our industry has experienced a high rate of turnover of management personnel in recent years. Any of our personnel may terminate their employment at will. If we lose one or more of our executive officers or other key employees, our ability to implement our business strategy successfully could be seriously harmed. Furthermore, replacing executive officers or other key employees may be difficult and may take an extended period of time because of the limited number of individuals in our industry with the breadth of skills and experience required to develop, gain marketing approval of and commercialize products successfully.

        Competition to hire from this limited pool is intense, and we may be unable to hire, train, retain or motivate these additional key employees on acceptable terms given the competition among numerous pharmaceutical and biotechnology companies for similar personnel. We also experience competition for the hiring of scientific and clinical personnel from universities and research institutions.

        We rely on consultants and advisors, including scientific and clinical advisors, to assist us in formulating our research and development and commercialization strategy. Our consultants and advisors may be employed by other entities and may have commitments under consulting or advisory contracts with those entities that may limit their availability to us. If we are unable to continue to attract and retain highly qualified personnel, our ability to develop and commercialize our product candidates will be limited.

Our employees, independent contractors, consultants, collaborators and contract research organizations may engage in misconduct or other improper activities, including non-compliance with regulatory standards and requirements, which could cause significant liability for us and harm our reputation.

        We are exposed to the risk that our employees, independent contractors, consultants, collaborators and contract research organizations may engage in fraudulent conduct or other illegal activity. Misconduct by those parties could include intentional, reckless and/or negligent conduct or disclosure

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of unauthorized activities to us that violates: (1) FDA regulations or similar regulations of comparable non-U.S. regulatory authorities, including those laws requiring the reporting of true, complete and accurate information to such authorities, (2) manufacturing standards, (3) federal and state healthcare fraud and abuse laws and regulations and similar laws and regulations established and enforced by comparable non-U.S. regulatory authorities, and (4) laws that require the reporting of financial information or data accurately. Activities subject to these laws also involve the improper use of information obtained in the course of clinical trials, which could result in regulatory sanctions and serious harm to our reputation. It is not always possible to identify and deter misconduct, and the precautions we take to detect and prevent this activity may not be effective in controlling unknown or unmanaged risks or losses or in protecting us from governmental investigations or other actions or lawsuits stemming from a failure to be in compliance with such laws, standards or regulations. If any such actions are instituted against us, and we are not successful in defending ourselves or asserting our rights, those actions could have a significant impact on our business and results of operations, including the imposition of civil, criminal and administrative penalties, damages, monetary fines, possible exclusion from participation in Medicare, Medicaid and other federal healthcare programs, contractual damages, reputational harm, diminished profits and future earnings, and curtailment of our operations, any of which could have a material adverse effect on our ability to operate our business and our results of operations.

We expect to expand our organization, and as a result, we may encounter difficulties in managing our growth, which could disrupt our operations.

        We expect to experience significant growth in the number of our employees and the scope of our operations, particularly in the areas of drug manufacturing, regulatory affairs and sales, marketing and distribution, as well as to support our public company operations. To manage these growth activities, we must continue to implement and improve our managerial, operational and financial systems, expand our facilities and continue to recruit and train additional qualified personnel. Our management may need to devote a significant amount of its attention to managing these growth activities. Moreover, our expected growth could require us to relocate to a different geographic area of the country. Due to our limited financial resources and the limited experience of our management team in managing a company with such anticipated growth, we may not be able to effectively manage the expansion or relocation of our operations, retain key employees, or identify, recruit and train additional qualified personnel. Our inability to manage the expansion or relocation of our operations effectively may result in weaknesses in our infrastructure, give rise to operational mistakes, loss of business opportunities, loss of employees and reduced productivity among remaining employees. Our expected growth could also require significant capital expenditures and may divert financial resources from other projects, such as the development of additional product candidates. If we are unable to effectively manage our expected growth, our expenses may increase more than expected, our ability to generate revenues could be reduced and we may not be able to implement our business strategy, including the successful commercialization of our product candidates.

Risks Related to Our Common Stock and this Offering

An active trading market for our common stock may not develop or be sustainable. If an active trading market does not develop, investors may not be able to resell their shares at or above the initial public offering price and our ability to raise capital in the future may be impaired.

        Prior to this offering, there has been no public market for our common stock. The initial public offering price for our common stock will be determined through negotiations with the underwriters. This price may not reflect the price at which investors in the market will be willing to buy and sell our shares following this offering. Although we intend to list our common stock on the NASDAQ Global Market, an active trading market for our shares may never develop or, if developed, be maintained following this offering. If an active market for our common stock does not develop or is not

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maintained, it may be difficult for you to sell shares you purchase in this offering without depressing the market price for the shares or at all. An inactive trading market may also impair our ability to raise capital to continue to fund operations by selling shares and may impair our ability to acquire other companies or technologies by using our shares as consideration.

If you purchase shares of common stock in this offering, you will suffer immediate dilution in the net tangible book value of your investment.

        The initial public offering price of our common stock is substantially higher than the net tangible book value per share of our common stock. Therefore, if you purchase shares of our common stock in this offering, you will pay a price per share that substantially exceeds our net tangible book value per share after this offering. Based on the assumed initial public offering price of $            per share, which is the midpoint of the price range set forth on the cover page of this prospectus, you will experience immediate dilution of $            per share, representing the difference between our pro forma net tangible book value per share after giving effect to this offering and the assumed initial public offering price. Purchasers of common stock in this offering will have contributed approximately      % of the aggregate price paid by all purchasers of our stock and will own approximately      % of our common stock outstanding after this offering, excluding any shares of our common stock that they may have acquired prior to this offering. Furthermore, if the underwriters exercise their over-allotment option or our previously issued options to acquire common stock at prices below the assumed initial public offering price are exercised, you will experience further dilution. For additional information on the dilution that you will experience immediately after this offering, see the section titled "Dilution."

The trading price of our common stock is likely to be highly volatile, which could result in substantial losses for purchasers of our common stock in this offering. Securities class action or other litigation involving our company or members of our management team could also substantially harm our business, financial condition and results of operations.

        Our stock price is likely to be highly volatile. The stock market in general and the market for smaller pharmaceutical and biotechnology companies in particular have experienced extreme volatility that has often been unrelated to the operating performance of particular companies. As a result of this volatility, you may not be able to sell your common stock at or above the initial public offering price and you may lose some or all of your investment. The market price for our common stock may be influenced by many factors, including:

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        In the past, securities class action litigation has often been brought against a company following a decline in the market price of its securities. This risk is especially relevant for biopharmaceutical companies, which have experienced significant stock price volatility in recent years. For example, in early 2016, securities class action lawsuits were filed in the United States District Court for the District of Massachusetts against Tetraphase Pharmaceuticals, Inc., or Tetraphase, its chief executive officer, its former chief operating officer and Mr. Lubner, its former and our current chief financial officer. The complaint generally alleges that the executives, including Mr. Lubner, violated the federal securities laws by making material misstatements or omissions concerning the efficacy and prospects of Tetraphase's lead drug candidate and that these executives profited from the sale of Tetraphase's stock prior to announcement of the related clinical trial's failure to meet its endpoint. Mr. Lubner believes he has valid defenses against these claims and intends to engage in a vigorous defense of such litigation. However, the results of this litigation and other legal proceedings are inherently uncertain and, regardless of the ultimate outcome or the merits, require substantial time and other resources to defend. Accordingly, this litigation and any similar litigation that we could face may result in substantial costs to us, divert management's attention and resources from our company as well as harm our reputation with analysts and investors, which could substantially harm our business, financial condition and results of operations.

We have broad discretion in the use of the net proceeds from this offering and may invest or spend the proceeds in ways with which you do not agree and in ways that may not yield a return on your investment.

        Although we currently intend to use the net proceeds from this offering in the manner described in the section titled "Use of Proceeds" in this prospectus, our management will have broad discretion in the application of the net proceeds from this offering and could spend the proceeds in ways that do not improve our results of operations or enhance the value of our common stock. You will not have the opportunity to influence our decisions on how to use our net proceeds from this offering. The failure by our management to apply these funds effectively could result in financial losses that could harm our business, cause the price of our common stock to decline and delay the development of our product candidates. Pending their use, we may invest the net proceeds from this offering in a manner that does not produce income or that loses value.

We are an "emerging growth company," and the reduced disclosure requirements applicable to emerging growth companies may make our common stock less attractive to investors.

        We are an "emerging growth company," as defined in the JOBS Act, and may remain an emerging growth company for up to five years. For so long as we remain an emerging growth company, we are

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permitted and plan to rely on exemptions from certain disclosure requirements that are applicable to other public companies that are not emerging growth companies. These exemptions include not being required to comply with the auditor attestation requirements of Section 404 of the Sarbanes-Oxley Act of 2002, or SOX Section 404, not being required to comply with any requirement that may be adopted by the Public Company Accounting Oversight Board regarding mandatory audit firm rotation or a supplement to the auditor's report providing additional information about the audit and the financial statements, reduced disclosure obligations regarding executive compensation and exemptions from the requirements of holding a nonbinding advisory vote on executive compensation and stockholder approval of any golden parachute payments not previously approved. In this prospectus, we have provided only two years of audited financial statements and have not included all of the executive compensation related information that would be required if we were not an emerging growth company. We cannot predict whether investors will find our common stock less attractive if we rely on these exemptions. If some investors find our common stock less attractive as a result, there may be a less active trading market for our common stock and our stock price may be more volatile.

        In addition, the JOBS Act provides that an emerging growth company can take advantage of an extended transition period for complying with new or revised accounting standards. This allows an emerging growth company to delay the adoption of certain accounting standards until those standards would otherwise apply to private companies. We have irrevocably elected not to avail ourselves of this exemption from new or revised accounting standards and, therefore, we will be subject to the same new or revised accounting standards as other public companies that are not emerging growth companies.

We will incur increased costs as a result of operating as a public company, and our management will be required to devote substantial time to new compliance initiatives and corporate governance practices.

        As a public company, and particularly after we are no longer an "emerging growth company," we will incur significant legal, accounting and other expenses that we did not incur as a private company, which we anticipate could amount to between $1.0 million and $2.0 million annually. The Sarbanes-Oxley Act of 2002, the Dodd-Frank Wall Street Reform and Consumer Protection Act, the listing requirements of the NASDAQ Global Market and other applicable securities rules and regulations impose various requirements on public companies, including establishment and maintenance of effective disclosure and financial controls and corporate governance practices. We expect that we will need to hire additional accounting, finance and other personnel in connection with our becoming, and our efforts to comply with the requirements of being, a public company and our management and other personnel will need to devote a substantial amount of time towards maintaining compliance with these requirements. These requirements will increase our legal and financial compliance costs and will make some activities more time-consuming and costly. For example, we expect that the rules and regulations applicable to us as a public company may make it more difficult and more expensive for us to obtain director and officer liability insurance, which could make it more difficult for us to attract and retain qualified members of our board of directors. We are currently evaluating these rules and regulations, and cannot predict or estimate the amount of additional costs we may incur or the timing of such costs. These rules and regulations are often subject to varying interpretations, in many cases due to their lack of specificity, and, as a result, their application in practice may evolve over time as new guidance is provided by regulatory and governing bodies. This could result in continuing uncertainty regarding compliance matters and higher costs necessitated by ongoing revisions to disclosure and governance practices.

        Pursuant to SOX Section 404 we will be required to furnish a report by our management on our internal control over financial reporting beginning with our second filing of an Annual Report on Form 10-K with the SEC after we become a public company. However, while we remain an emerging growth company, we will not be required to include an attestation report on internal control over financial reporting issued by our independent registered public accounting firm. To achieve compliance with SOX Section 404 within the prescribed period, we will be engaged in a process to document and

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evaluate our internal control over financial reporting, which is both costly and challenging. In this regard, we will need to continue to dedicate internal resources, potentially engage outside consultants and adopt a detailed work plan to assess and document the adequacy of internal control over financial reporting, continue steps to improve control processes as appropriate, validate through testing that controls are functioning as documented and implement a continuous reporting and improvement process for internal control over financial reporting. Despite our efforts, there is a risk that we will not be able to conclude, within the prescribed timeframe or at all, that our internal control over financial reporting is effective. If we identify one or more material weaknesses, it could result in an adverse reaction in the financial markets due to a loss of confidence in the reliability of our financial statements.

A significant portion of our total outstanding shares is restricted from immediate resale but may be sold into the market in the near future, which could cause the market price of our common stock to decline significantly, even if our business is doing well.

        Sales of a substantial number of shares of our common stock in the public market could occur at any time. These sales, or the perception in the market that the holders of a large number of shares of common stock intend to sell shares, could reduce the market price of our common stock. Following this offering, we will have                 shares of common stock outstanding based on the 3,883,492 shares of our common stock outstanding as of August 16, 2016 and after giving effect to (i) the conversion of all outstanding shares of our preferred stock into 95,367,647 shares of our common stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into                shares of common stock, at an assumed exercise price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, in each case upon the closing of this offering. Of these shares, the                shares sold by us in this offering may be resold in the public market immediately, unless purchased by our affiliates. The remaining                shares are currently restricted under securities laws or as a result of lock-up or other agreements, but will be able to be sold after this offering as described in the "Shares Eligible for Future Sale" section of this prospectus. The representatives of the underwriters may release these stockholders from their lock-up agreements with the underwriters at any time and without notice, which would allow for earlier sales of shares in the public market.

        Moreover, after this offering, holders of an aggregate of                shares of our common stock will have rights, subject to conditions, to require us to file registration statements covering their shares or to include their shares in registration statements that we may file for ourselves or other stockholders. We also plan to register all shares of common stock that we may issue under our equity compensation plans. Once we register these shares, they can be freely sold in the public market upon issuance and once vested, subject to volume limitations applicable to affiliates and the lock-up agreements. If these additional shares are sold, or if it is perceived that they will be sold, in the public market, the trading price of our common stock could decline.

We might not be able to utilize a significant portion of our net operating loss carryforwards and research and development tax credit carryforwards.

        As of December 31, 2015, we had federal and state net operating loss carryforwards of $22.8 million and $20.5 million, respectively, and federal research and development tax credit carryforwards of $1.5 million and state research and development tax credit carryforwards of $1.0 million. If not utilized, the net operating loss carryforwards will begin to expire in 2029. If not utilized, the research and development credits will begin to expire in 2030. These net operating loss and tax credit carryforwards could expire unused and be unavailable to offset future income tax liabilities. In addition, under Section 382 of the Internal Revenue Code of 1986, as amended, and corresponding provisions of state law, if a corporation undergoes an "ownership change," which is generally defined as a greater than 50% change, by value, in its equity ownership over a three-year period, the corporation's

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ability to use its pre-change net operating loss carryforwards and other pre-change tax attributes to offset its post-change income may be limited. We have not determined if we have experienced Section 382 ownership changes in the past and if a portion of our net operating loss and tax credit carryforwards are subject to an annual limitation under Section 382. In addition, we may experience ownership changes in the future as a result of subsequent shifts in our stock ownership, including this offering, some of which may be outside of our control. We have not conducted a detailed study to document whether our historical activities qualify to support the research and development credit carryforwards. A detailed study could result in adjustment to our research and development credit carryforwards. If we determine that an ownership change has occurred and our ability to use our historical net operating loss and tax credit carryforwards is materially limited, or if our research and development carryforwards are adjusted, it would harm our future operating results by effectively increasing our future tax obligations.

We do not anticipate paying any cash dividends on our capital stock in the foreseeable future. Accordingly, stockholders must rely on capital appreciation, if any, for any return on their investment.

        We have never declared nor paid cash dividends on our capital stock. We currently plan to retain all of our future earnings, if any, to finance the operation, development and growth of our business. In addition, the terms of any future debt or credit agreements may preclude us from paying dividends. As a result, capital appreciation, if any, of our common stock will be your sole source of gain for the foreseeable future.

Concentration of ownership of our common stock among our existing executive officers, directors and principal stockholders may prevent new investors from influencing significant corporate decisions.

        Based upon shares outstanding as of August 16, 2016, and after giving effect to the conversion of all outstanding shares of preferred stock into (i) 95,367,647 shares of our common stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into                shares of common stock, at an assumed exercise price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, our executive officers and directors, combined with our stockholders who owned more than 5% of our outstanding common stock before this offering and their affiliates, will, in the aggregate, beneficially own shares representing approximately      % of our common stock. As a result, if these stockholders were to choose to act together, they would be able to control all matters submitted to our stockholders for approval, as well as our management and affairs. For example, these persons, if they choose to act together, would control the election of directors and approval of any merger, consolidation or sale of all or substantially all of our assets. This concentration of ownership control may:

        Some of these persons or entities may have interests different than yours. For example, because many of these stockholders purchased their shares at prices substantially below the price at which shares are being sold in this offering and have held their shares for a longer period, they may be more interested in selling our company to an acquirer than other investors or they may want us to pursue strategies that deviate from the interests of other stockholders.

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Provisions in our corporate charter documents and under Delaware law may prevent or frustrate attempts by our stockholders to change our management or hinder efforts to acquire a controlling interest in us.

        Provisions in our corporate charter and our bylaws that will become effective upon the closing of this offering may discourage, delay or prevent a merger, acquisition or other change in control of us that stockholders may consider favorable, including transactions in which you might otherwise receive a premium for your shares. These provisions could also limit the price that investors might be willing to pay in the future for shares of our common stock, thereby depressing the market price of our common stock. In addition, because our board of directors is responsible for appointing the members of our management team, these provisions may frustrate or prevent any attempts by our stockholders to replace or remove our current management by making it more difficult for stockholders to replace members of our board of directors. Among other things, these provisions:

        Moreover, because we are incorporated in Delaware, we are governed by the provisions of Section 203 of the General Corporation Law of the State of Delaware, which prohibits a person who owns in excess of 15% of our outstanding voting stock from merging or combining with us for a period of three years after the date of the transaction in which the person acquired in excess of 15% of our outstanding voting stock, unless the merger or combination is approved in a prescribed manner. This could discourage, delay or prevent someone from acquiring us or merging with us, whether or not it is desired by, or beneficial to, our stockholders. This could also have the effect of discouraging others from making tender offers for our common stock, including transactions that may be in your best interests. These provisions may also prevent changes in our management or limit the price that investors are willing to pay for our stock.

If securities or industry analysts do not publish research or publish inaccurate or unfavorable research about our business, our share price and trading volume could decline.

        The trading market for our common stock will likely depend in part on the research and reports that securities or industry analysts publish about us or our business. We do not have any control over these analysts. We do not currently have research coverage, and there can be no assurance that analysts will cover us, or provide favorable coverage. Securities or industry analysts may elect not to provide research coverage of our common stock after this offering, and such lack of research coverage may negatively impact the market price of our common stock. In the event we do have analyst coverage, if one or more analysts downgrade our stock or change their opinion of our stock, our share price would likely decline. In addition, if one or more analysts cease coverage of our company or fail to regularly publish reports on us, we could lose visibility in the financial markets, which could cause our share price or trading volume to decline.

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SPECIAL NOTE REGARDING FORWARD-LOOKING STATEMENTS

        This prospectus, including the sections entitled "Prospectus Summary," "Risk Factors," "Management's Discussion and Analysis of Financial Condition and Results of Operations" and "Business," contains express or implied forward-looking statements that are based on our management's belief and assumptions and on information currently available to our management. Although we believe that the expectations reflected in these forward-looking statements are reasonable, these statements relate to future events or our future operational or financial performance, and involve known and unknown risks, uncertainties and other factors that may cause our actual results, performance or achievements to be materially different from any future results, performance or achievements expressed or implied by these forward-looking statements. Forward-looking statements in this prospectus include, but are not limited to, statements about:

        In some cases, forward-looking statements can be identified by terminology such as "may," "should," "expects," "intends," "plans," "anticipates," "believes," "estimates," "predicts," "potential," "continue" or the negative of these terms or other comparable terminology. These statements are only predictions. You should not place undue reliance on forward-looking statements because they involve known and unknown risks, uncertainties and other factors, which are, in some cases, beyond our control and which could materially affect results. Factors that may cause actual results to differ materially from current expectations include, among other things, those listed under the section entitled "Risk Factors" and elsewhere in this prospectus. If one or more of these risks or uncertainties occur, or if our underlying assumptions prove to be incorrect, actual events or results may vary significantly from those implied or projected by the forward-looking statements. No forward-looking statement is a guarantee of future performance. You should read this prospectus and the documents that we reference in this prospectus and have filed with the Securities and Exchange Commission as exhibits to the

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registration statement, of which this prospectus is a part, completely and with the understanding that our actual future results may be materially different from any future results expressed or implied by these forward-looking statements.

        The forward-looking statements in this prospectus represent our views as of the date of this prospectus. We anticipate that subsequent events and developments will cause our views to change. However, while we may elect to update these forward-looking statements at some point in the future, we have no current intention of doing so except to the extent required by applicable law. You should therefore not rely on these forward-looking statements as representing our views as of any date subsequent to the date of this prospectus.

        This prospectus includes statistical and other industry and market data that we obtained from industry publications and research, surveys and studies conducted by third parties. Industry publications and third-party research, surveys and studies generally indicate that their information has been obtained from sources believed to be reliable, although they do not guarantee the accuracy or completeness of such information. We are responsible for all of the disclosure contained in this prospectus, and we believe these industry publications and third-party research, surveys and studies are reliable.

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USE OF PROCEEDS

        We estimate that our net proceeds from the sale of shares of our common stock in this offering will be approximately $             million, or $             million if the underwriters exercise in full their option to purchase additional shares, assuming an initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us.

        A $1.00 increase (decrease) in the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, would increase (decrease) the net proceeds to us from this offering by $             million, assuming the number of shares offered by us, as set forth on the cover page of this prospectus, remains the same and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us. A 1.0 million share increase (decrease) in the number of shares offered by us, as set forth on the cover page of this prospectus, would increase (decrease) our net proceeds from this offering by $             million, assuming no change in the assumed initial public offering price per share and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us. We do not expect that a change in the offering price or the number of shares by these amounts would have a material effect on our intended uses of the net proceeds from this offering, although it may impact the amount of time prior to which we may need to seek additional capital.

        We currently intend to use the net proceeds from this offering, together with our existing cash and cash equivalents, as follows:

        Based on our current plans, we believe our existing cash and cash equivalents, together with the net proceeds from this offering, will be sufficient to fund our operations through                         .

        This expected use of the net proceeds from this offering represents our intentions based upon our current plans and business conditions. For example, we may use a portion of the net proceeds for the acquisition of businesses or technologies to continue to build our pipeline, our research and development capabilities and our intellectual property position, although we currently have no agreements, commitments or understandings with respect to any such transaction. We cannot predict with certainty all of the particular uses for the net proceeds to be received upon the completion of this offering or the amounts that we will actually spend on the uses set forth above. The amounts and timing of our actual expenditures may vary significantly depending on numerous factors, including the progress of our research and development, the status of and results from non-clinical studies or clinical trials we may commence in the future, as well as any collaborations that we may enter into with third parties for our product candidates or strategic opportunities that become available to us, and any unforeseen cash needs. Moreover, we are unable to estimate the allocation of proceeds between our rMG program and our LN program at this time because we have not conducted separate clinical trials for these indications and have not received FDA feedback on trial design for our planned clinical trials in these indications. Likewise, we are unable to forecast future expenditures in our pipeline programs in Factor D, oral C5 inhibition and C1s on a program by program basis at this time because we have not conducted clinical trials or received FDA feedback for these programs. As a result, our management will retain broad discretion over the allocation of the net proceeds from this offering.

        Pending our use of proceeds from this offering, we intend to invest the net proceeds in a variety of capital preservation instruments, including short-term, investment-grade, interest-bearing instruments and U.S. government securities.

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DIVIDEND POLICY

        We have never declared or paid cash dividends on our capital stock. We intend to retain all available funds and any future earnings to fund the growth and development of our business. We do not intend to pay cash dividends to our stockholders in the foreseeable future.

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CAPITALIZATION

        The following table sets forth our cash and cash equivalents and our capitalization as of June 30, 2016:

        The pro forma as adjusted information below is illustrative only, and our capitalization following the completion of this offering will be adjusted based on the actual initial public offering price and other terms of this offering determined at pricing.

        The following table should be read together with "Management's Discussion and Analysis of Financial Condition and Results of Operations," "Description of Capital Stock," and the consolidated financial statements and related notes appearing elsewhere in this prospectus.

 
  As of June 30, 2016  
 
  Actual (1)   Pro Forma   Pro Forma
As Adjusted
 
 
  (In thousands, except share and per
share data)

 
 
  (unaudited)
 

Cash and cash equivalents

  $ 40,246   $ 40,246   $    

Convertible preferred stock, $0.001 par value; 95,367,647 shares authorized, 95,367,647 shares issued and outstanding, actual; no shares authorized, issued or outstanding, pro forma and pro forma as adjusted

  $ 86,484   $   $  

Stockholders' (deficit) equity:

                   

Preferred stock, $0.001 par value; no shares authorized, issued or outstanding, actual;            shares authorized, no shares issued or outstanding, pro forma and pro forma as adjusted

               

Common stock, $0.001 par value; 125,000,000 shares authorized, 3,883,492 shares issued and outstanding, actual; 125,000,000 shares authorized,             shares issued and outstanding, pro forma;            shares authorized,             shares issued and outstanding, pro forma as adjusted

    4     101        

Additional paid-in capital

    3,011     89,331        

Accumulated deficit

    (49,762 )   (49,762 )      

Total stockholders' (deficit) equity

    (46,747 )   39,670        

Total capitalization

  $ 39,737   $ 39,670   $    

(1)
Excludes 1,559,444 shares of our common stock issuable upon the exercise of warrants outstanding as of June 30, 2016.

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        A $1.00 increase (decrease) in the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, would increase (decrease) the pro forma as adjusted amount of cash, additional paid-in capital, total stockholders' equity and total capitalization by approximately $             million, assuming the number of shares offered by us, as set forth on the cover page of this prospectus, remains the same and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us. Similarly, each increase (decrease) of 1.0 million shares in the number of shares offered by us in this offering would increase (decrease) the pro forma as adjusted amount of cash and cash equivalents, additional paid-in capital, total stockholders' equity and total capitalization by approximately $             million, assuming the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, remains the same, and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us. The pro forma as adjusted information is illustrative only, and our capitalization following the completion of this offering will be adjusted based on the actual initial public offering price and other terms of this offering determined at pricing.

        The actual, pro forma and pro forma as adjusted information set forth in the table excludes:

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DILUTION

        If you invest in our common stock in this offering, your ownership interest will be diluted immediately to the extent of the difference between the initial public offering price per share of our common stock and the pro forma as adjusted net tangible book value per share of our common stock immediately after this offering.

        Our historical net tangible book value (deficit) as of June 30, 2016 was $(47.2) million, or $(12.16) per share of our common stock. Our historical net tangible book value (deficit) is the amount of our total tangible assets less our total liabilities and redeemable convertible preferred stock. Historical net tangible book value (deficit) per share represents historical net tangible book value divided by the 3,883,492 shares of our common stock outstanding as of June 30, 2016.

        Our pro forma net tangible book value as of June 30, 2016 was $39.2 million, or $0.39 per share of our common stock. Pro forma net tangible book value per share represents historical net tangible book value divided by the total number of shares of common stock outstanding as of June 30, 2016, after giving effect to (i) the conversion of all shares of our preferred stock then outstanding into 95,367,647 shares of common stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into            shares of common stock, at an assumed exercise price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, in each case upon the closing of this offering.

        After giving further effect to the sale of shares of            common stock that we are offering at the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, and after deducting the estimated underwriting discounts and commissions and estimated offering expenses payable by us, our pro forma as adjusted net tangible book value as of June 30, 2016 would have been approximately $             million, or approximately $            per share. This amount represents an immediate increase in pro forma net tangible book value of $            per share to our existing stockholders and an immediate dilution in pro forma net tangible book value of approximately $            per share to investors participating in this offering.

        Dilution per share to investors participating in this offering is determined by subtracting pro forma as adjusted net tangible book value per share after this offering from the initial public offering price per share paid by investors participating in this offering. The following table illustrates this dilution (without giving effect to any exercise by the underwriters of their over-allotment option):

Assumed initial public offering price per share

        $    

Historical net tangible book value (deficit) per share as of June 30, 2016

  $          

Increase in historical net tangible book value per share attributable to pro forma adjustments described in preceding paragraphs

             

Pro forma net tangible book value per share as of June 30, 2016

             

Increase in pro forma net tangible book value per share attributable to investors participating in this offering

             

Pro forma as adjusted net tangible book value per share after this offering

        $    

Dilution per share to new investors participating in this offering

        $    

        If the underwriters exercise their option to purchase additional shares of common stock in this offering in full at the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover of this prospectus and assuming the number of shares offered by us, as set forth on the cover page of this prospectus, remains the same and after deducting estimated

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underwriting discounts and commissions and estimated offering expenses payable by us, the pro forma as adjusted net tangible book value would be $            per share, and the dilution in pro forma net tangible book value per share to investors in this offering would be $            per share.

        A $1.00 increase (decrease) in the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, would increase (decrease) the pro forma as adjusted net tangible book value by $            per share and the dilution to investors participating in this offering by $            per share, assuming the number of shares offered by us, as set forth on the cover page of this prospectus, remains the same, and after deducting estimated underwriting discounts and commissions and estimated expenses payable by us. Similarly, each increase (decrease) of 1.0 million shares in the number of shares offered by us in this offering would increase (decrease) the pro forma as adjusted net tangible book value by $            per share and the dilution to investors participating in this offering by $            per share, assuming the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, remains the same and after deducting estimated underwriting discounts and commissions and estimated expenses payable by us.

        The following table summarizes, on a pro forma as adjusted basis, as of June 30, 2016, the difference between the number of shares of common stock purchased from us, the total consideration paid to us and the average price per share paid by existing stockholders and by investors in this offering at an assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, before deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us.

 
   
   
  Total
Consideration
   
 
 
  Shares Purchased    
 
 
  Average Price
Per Share
 
 
  Number   Percent   Amount   Percent  
 
  (in thousands except per share data)
   
 

Existing stockholders

            %           % $    

Investors in this offering

                               

Total

          100.0 %         100.0 %      

        The above discussion and tables are based on shares of common stock issued and outstanding as of June 30, 2016 and (i) includes 95,367,647 additional shares of our common stock issuable upon the conversion of all outstanding shares of our preferred stock into shares of common stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into            shares of common stock, at an assumed exercise price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, in each case upon the closing of this offering, and excludes:

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        A $1.00 increase (decrease) in the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, would increase (decrease) the total consideration paid by investors in this offering by approximately $             million, assuming the number of shares offered by us, as set forth on the cover page of this prospectus, remains the same and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us. Similarly, each increase (decrease) of 1.0 million shares in the number of shares offered by us in this offering would increase (decrease) the total consideration paid by investors in this offering by approximately $             million, assuming the assumed initial public offering price of $            per share, the midpoint of the price range set forth on the cover page of this prospectus, remains the same, and after deducting estimated underwriting discounts and commissions and estimated offering expenses payable by us.

        To the extent that outstanding options are exercised or shares are issued under our equity incentive plans, you will experience further dilution. In addition, we may choose to raise additional capital due to market conditions or strategic considerations even if we believe we have sufficient funds for our current or future operating plans. To the extent that additional capital is raised through the sale of equity or convertible debt securities, the issuance of these securities may result in further dilution to our stockholders.

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SELECTED CONSOLIDATED FINANCIAL DATA

         The following selected historical consolidated financial data should be read together with "Management's Discussion and Analysis of Financial Condition and Results of Operations" and the consolidated financial statements, related notes and other financial information included elsewhere in this prospectus. The selected consolidated financial data in this section are not intended to replace the consolidated financial statements and are qualified in their entirety by the consolidated financial statements and related notes included elsewhere in this prospectus.

        We have derived the selected consolidated statement of operations data for the years ended December 31, 2014 and 2015, and the selected consolidated balance sheet data as of December 31, 2014 and 2015 from our audited consolidated financial statements included elsewhere in this prospectus. We have derived the selected consolidated statement of operations data for the six months ended June 30, 2015 and 2016 and balance sheet data as of June 30, 2016 from our unaudited consolidated financial statements included elsewhere in this prospectus. The unaudited consolidated financial statements have been prepared on a basis consistent with our audited consolidated financial statements included in this prospectus and, in the opinion of management, reflect all adjustments, consisting only of normal recurring adjustments, necessary to fairly state our financial position as of June 30, 2016 and results of operations for the six months ended June 30, 2015 and 2016. Our historical results are not necessarily indicative of the results that may be expected in the future, and our interim period results are not necessarily indicative of results to be expected for a full year or any other interim period.

 
  Year Ended December 31,   Six Months Ended June 30,  
 
  2014   2015   2015   2016  
 
  (In thousands, except share and per share data)
 

Consolidated Statement of Operations Data:

                         

Revenue

  $ 4,830   $ 4,094   $ 2,177   $ 4,928  

Operating expenses:

                         

Research & development

    10,016     15,217     6,566     11,462  

General & administrative

    1,924     2,233     1,010     2,376  

Total operating expenses

    11,940     17,450     7,576     13,838  

Loss from operations

    (7,110 )   (13,356 )   (5,399 )   (8,910 )

Other income (expense), net                  

    1,607     (606 )   (49 )   (952 )

Loss from before benefit from income taxes

    (5,503 )   (13,962 )   (5,448 )   (9,862 )

Benefit from income taxes

    27     19          

Net loss

    (5,476 )   (13,943 )   (5,448 )   (9,862 )

Gain on extinguishment of redeemable convertible preferred shares

        1,673          

Net loss attributable to common shareholders

  $ (5,476 ) $ (12,270 ) $ (5,448 ) $ (9,862 )

Net loss per share attributable to common stockholders—basic and diluted (1)

  $ (1.78 ) $ (3.53 ) $ (1.61 ) $ (2.62 )

Weighted-average common shares used in net loss per share attributable to common stockholders—basic and diluted (1)

    3,077,293     3,479,651     3,377,647     3,768,332  

Pro forma net loss per share attributable to common stockholders—basic and diluted (unaudited) (1)

        $ (0.20 )       $ (0.12 )

Pro forma weighted-average common shares used in net loss per share attributable to common stockholders—basic and diluted (unaudited) (1)

          54,043,850           73,543,051  

(1)
See Note 2 to our notes to consolidated financial statements included elsewhere in this prospectus for an explanation of the method used to calculate the historical and pro forma basic and diluted net loss per common share and the number of shares used in the computation of the per share amounts.

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  As of December 31,    
 
 
  As of
June 30,
2016
 
 
  2014   2015  
 
  (In thousands)
 

Consolidated Balance Sheet Data:

                   

Cash and cash equivalents

  $ 4,039   $ 19,386   $ 40,246  

Working capital (1)

    1,642     13,248     34,975  

Total assets

    7,315     24,342     49,312  

Redeemable convertible preferred stock

    28,984     53,675     86,484  

Accumulated deficit

    (25,957 )   (39,900 )   (49,762 )

Total stockholders' deficit

    (25,714 )   (37,199 )   (46,747 )

(1)
We define working capital as current assets less current liabilities.

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MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS

         The following discussion and analysis of our financial condition and results of operations should be read together with our consolidated financial statements and related notes and other financial information appearing elsewhere in this prospectus. Some of the information contained in this discussion and analysis or set forth elsewhere in this prospectus, including information with respect to our plans and strategy for our business and related financing, includes forward-looking statements that involve risks and uncertainties. As a result of many factors, including those factors set forth in the "Risk Factors" section of this prospectus, our actual results could differ materially from the results described in or implied by the forward-looking statements contained in the following discussion and analysis.

Overview

        We are a clinical-stage biopharmaceutical company using our proprietary peptide chemistry platform to develop novel therapeutics for the treatment of serious diseases that are caused by excessive or uncontrolled activation of the complement system, a critical component of the immune system. The complement system, which consists of approximately 30 interacting proteins, offers a target-rich opportunity for us to leverage our proprietary peptide chemistry platform, which was pioneered by Nobel Laureate Dr. Jack Szostak and allows us to inhibit certain uncontrolled complement pathway factors involved in complement-mediated diseases. Known as our Extreme Diversity platform, our proprietary macrocyclic peptide chemistry technology allows us to produce synthetic macrocyclic peptides that combine the diversity and specificity of antibodies with the pharmacological properties of small molecules. We believe this chemistry technology will allow us to pursue challenging targets for which only monoclonal antibodies have been developed.

        We are developing our lead product candidate, RA101495, a convenient self-administered subcutaneous, or SC, injection, which is an injection into the tissue under the skin, for the treatment of paroxysmal nocturnal hemoglobinuria, or PNH. PNH is a rare, chronic, life-threatening, blood disorder where red blood cells are mistakenly attacked and destroyed by the complement system. We expect to initiate our Phase 2 clinical program for RA101495 in PNH patients in the first quarter of 2017 and release data in the second half of 2017. We are also developing RA101495, administered SC, to treat other debilitating complement-mediated diseases such as refractory generalized myasthenia gravis, or rMG, and lupus nephritis, or LN. We expect to initiate a Phase 2 clinical trial with RA101495 for rMG and a Phase 1b clinical trial in LN in the second half of 2017. We also have preclinical programs targeting selective inhibition of other complement factors for diseases with no approved therapies, including a Factor D program for ophthalmologic and renal diseases, an oral, small molecule C5 inhibitor and a C1s program for certain autoimmune and central nervous system, or CNS, diseases. In addition to our focus on developing novel therapeutics to treat complement-mediated diseases, we have validated our Extreme Diversity platform by successfully identifying and delivering orally-available cyclic peptides for a non-complement cardiovascular target with a large market opportunity in a collaboration with Merck & Co., Inc., or Merck.

        Since our inception in June 2008, we have devoted substantially all of our resources to organizing and staffing our company, business planning, raising capital, acquiring and developing our proprietary chemistry technology, identifying potential product candidates and conducting preclinical studies of our product candidates and a clinical trial of our lead product candidate, RA101495. To date, we have not generated any product revenue and have financed our operations primarily through the private placement of our securities and revenue from our collaboration with Merck. As of June 30, 2016, we had raised an aggregate of $103.5 million comprised of $86.0 million gross proceeds from private placements of our securities and $17.5 million in payments in connection with our collaboration and license agreement with Merck, or the Merck Agreement. As of June 30, 2016, our principal source of liquidity was cash and cash equivalents, which totaled $40.2 million.

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        As of June 30, 2016, we had an accumulated deficit of $49.8 million. Our net losses were $5.5 million and $13.9 million for the years ended December 31, 2014 and 2015, respectively, and, $9.9 million for the six-month period ended June 30, 2016. We have incurred significant net operating losses in every year since our inception and expect to continue to incur increasing net operating losses and significant expenses for the foreseeable future. Our net losses may fluctuate significantly from quarter to quarter and year to year. We anticipate that our expenses will increase significantly as we:

        We believe that our available funds subsequent to this offering will be sufficient to fund our operations through                . We do not expect to generate revenue from product sales unless and until we successfully complete development and obtain regulatory approval for a product candidate, which we expect will take a number of years and is subject to significant uncertainty. Additionally, we currently use contract research organizations, or CROs, and contract manufacturing organizations, or CMOs, to carry out our preclinical and clinical development activities and we do not yet have a sales organization. If we obtain regulatory approval for our product candidates, we expect to incur significant commercialization expenses related to product sales, marketing, manufacturing and distribution. Accordingly, we may seek to fund our operations through public or private equity or debt financings or other sources, including strategic collaborations. We may, however, be unable to raise additional funds or enter into such other arrangements when needed on favorable terms or at all. Our failure to raise capital or enter into such other arrangements as and when needed would have a negative impact on our financial condition and our ability to develop our current product candidates, or any additional product candidates, if developed.

Financial Overview

Revenue

        We have derived all of our revenue to date from our collaboration and license agreement with Merck, or the Merck Agreement, which we entered into in April 2013. Under the Merck Agreement, we collaborated with Merck and used our proprietary drug discovery technology platform to identify orally available cyclic peptides for non-complement targets nominated by Merck and provided specific research and development services. At the signing, Merck paid us an upfront, non-refundable, license fee payment of $4.5 million. In addition, during the research term, which ended in April 2016, Merck reimbursed us for research and development services provided by us in accordance with a pre-specified number of our full-time equivalent employees, or FTEs, working under the Merck Agreement. At the conclusion of the research term, Merck elected to continue the development of a non-complement cardiovascular program target with a large market opportunity, for which we had received $3.5 million in preclinical milestone payments as of June 30, 2016. We are also entitled to receive future aggregate milestone payments of up to $61.5 million and low-to-mid single digit percentage royalties on any future sales for this program target. For additional information about the Merck Agreement, see the section entitled "—Revenue Recognition—Merck Collaboration and License Agreement." For

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additional information about our revenue recognition policy, see the section entitled "—Critical Accounting Policies and Significant Judgments and Estimates—Revenue."

        To date, we have not generated any revenue from product sales and do not expect to do so in the near future. We expect that our revenue will be less than our expenses for the foreseeable future and that we will experience increasing losses as we continue our development of, and seek regulatory approvals for, our product candidates and begin to commercialize any approved products. Our ability to generate revenue for each product candidate for which we receive regulatory approval will depend on numerous factors, including competition, commercial manufacturing capability and market acceptance of our products.

Research and Development Expenses

        Research and development expenses consist primarily of costs incurred for our research activities, including development of our proprietary chemistry technology platform, and our preclinical and clinical candidates, which include:

        We expense research and development costs as incurred. We recognize costs for certain development activities, such as preclinical studies and clinical trials, based on an evaluation of the progress to completion of specific tasks using information provided to us by our vendors such as patient enrollment or clinical site activations for services received and efforts expended.

        Research and development activities are central to our business model. We expect research and development costs to increase significantly for the foreseeable future as our current development programs progress and new programs are added.

        We have not provided program costs since inception because historically we have not tracked or recorded our research and development expenses on a program-by-program basis. We use our employee and infrastructure resources across multiple research and development programs directed toward developing our Extreme Diversity platform and for identifying and developing product candidates. We manage certain activities such as contract research and manufacturing of RA101495 and our discovery programs through our third-party vendors, and do not track the costs of these activities on a program-by-program basis.

        Because of the numerous risks and uncertainties associated with product development, we cannot determine with certainty the duration and completion costs of the current or future preclinical studies and clinical trials or if, when, or to what extent we will generate revenues from the commercialization and sale of our product candidates. We may never succeed in achieving regulatory approval for our product candidates. The duration, costs and timing of preclinical studies and clinical trials and development of our product candidates will depend on a variety of factors, including:

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        A change in the outcome of any of these factors could mean a significant change in the costs and timing associated with the development of our current and future preclinical and clinical product candidates. For example, if the FDA, or another regulatory authority were to require us to conduct clinical trials beyond those that we currently anticipate will be required for the completion of clinical development, or if we experience significant delays in execution of or enrollment in any of our preclinical studies or clinical trials, we could be required to expend significant additional financial resources and time on the completion of preclinical and clinical development. We expect our research and development expenses to increase for the foreseeable future as we continue the development of product candidates.

General and Administrative Expenses

        General and administrative expenses consist primarily of employee related expenses, including salaries, benefits, and stock-based compensation, for personnel in executive, finance, facility operations and administrative functions. Other significant costs include facility costs not otherwise included in research and development expenses, legal fees relating to patent and corporate matters, and fees for accounting, tax and consulting services.

        We anticipate that our general and administrative expenses will increase in the future to support continued research and development activities, potential commercialization of our product candidates and increased costs of operating as a public company. These increases will likely include increased costs related to the hiring of additional personnel and fees to outside consultants, lawyers and accountants, among other expenses. Additionally, we anticipate increased costs associated with being a public company, including expenses related to services associated with maintaining compliance with exchange listing and Securities and Exchange Commission, or the SEC, requirements, director and officer insurance costs and investor and public relations costs.

Other Income (Expense), Net

        Other income (expense), net, primarily consists of interest expense incurred on debt instruments, amortized debt discount, interest income earned on our cash and cash equivalents, non-cash changes in fair value of the derivative liability associated with our convertible notes, loss on debt extinguishment and the increase in fair value of preferred stock tranche rights, or Preferred Stock Tranche Rights. The debt discount primarily consisted of the relative fair value of warrants and the fair value of bifurcated features embedded in our convertible notes issued in April 2015. The debt discount has been amortized to interest expense over the life of the convertible note and was recorded at fair value upon issuance.

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Critical Accounting Policies and Significant Judgments and Estimates

        Our management's discussion and analysis of our financial condition and results of operations is based on our financial statements, which we have prepared in accordance with U.S. generally accepted accounting principles. We believe that several accounting policies are important to understanding our historical and future performance. We refer to these policies as critical because these specific areas generally require us to make judgments and estimates about matters that are uncertain at the time we make the estimate, and different estimates—which also would have been reasonable—could have been used. On an ongoing basis, we evaluate our estimates and judgments, including those described in greater detail below. We base our estimates on historical experience and other market-specific or other relevant assumptions that we believe to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying value of assets and liabilities that are not readily apparent from other sources. Actual results may differ from these estimates under different assumptions or conditions.

        While our significant accounting policies are described in more detail in the notes to our financial statements appearing elsewhere in this prospectus, we believe the following accounting policies to be most critical to the judgments and estimates used in the preparation of our financial statements.

Revenue Recognition

        We have derived all of our revenue to date from our Merck Agreement. The terms of the Merck Agreement contain multiple elements, including:

        Multiple element or deliverable arrangements, such as the Merck Agreement, are analyzed to determine whether the deliverables can be separated or whether they must be accounted for as a single unit of accounting. When deliverables are separable, payments received are allocated to the separate units of accounting based on the relative selling price method and the appropriate revenue recognition principles are applied to each unit. When we determine that an arrangement should be accounted for as a single unit of accounting, we must determine the period over which the performance obligations will be performed and revenue will be recognized.

        We recognize revenue for each element or deliverable under the Merck Agreement when all of the following criteria are met:

        Revenue in connection with:

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        Amounts received prior to satisfying the revenue recognition criteria are recorded as deferred revenue in our consolidated balance sheets.

Accrued Research and Development Expenses

        As part of the process of preparing our financial statements, we are required to estimate our accrued expenses. This process involves reviewing open contracts and purchase orders, communicating with our personnel to identify services that have been performed for us and estimating the level of service performed and the associated cost incurred for the service when we have not yet been invoiced or otherwise notified of the actual cost. The majority of our service providers invoice us monthly in arrears for services performed or when contractual milestones are met. We make estimates of our accrued expenses as of each balance sheet date in our financial statements based on facts and circumstances known to us at that time. We periodically confirm the accuracy of our estimates with the service providers and make adjustments if necessary. Examples of estimated accrued research and development expenses include fees paid to:

        We base our expenses related to clinical trials on our estimates of the services received and efforts expended pursuant to contracts with multiple CROs that conduct and manage clinical trials on our behalf. The financial terms of these agreements are subject to negotiation, vary from contract to contract and may result in uneven payment flows. There may be instances in which payments made to our vendors will exceed the level of services provided and result in a prepayment of the clinical expense. Payments under some of these contracts depend on factors such as the successful enrollment of subjects and the completion of clinical trial milestones. In accruing service fees, we estimate the time period over which services will be performed, enrollment of subjects and the level of effort to be expended in each period. If the actual timing of the performance of services or the level of effort varies from our estimate, we adjust the accrual or prepaid expense accordingly. Although we do not expect our estimates to be materially different from amounts actually incurred, if our estimates of the status and timing of services performed differs from the actual status and timing of services performed we may report amounts that are too high or too low in any particular period. To date, there have been no material differences from our estimates to the amounts actually incurred.

Stock-Based Compensation

        We account for stock-based compensation awards to employees and directors in accordance with FASB ASC Topic 718, Compensation-Stock Compensation , or ASC 718. ASC 718 applies to any awards granted, modified, repurchased, or canceled after December 31, 2005, and requires the measurement and recognition of costs for all stock-based awards made to employees and directors, including stock options, stock appreciation rights, stock units, and discounted employee stock purchases. We recognize compensation costs related to employees based on the estimated fair value of the awards on the date of grant and over the associated service periods, using the straight-line method. The options vest periodically over various schedules and all options expire no later than 10 years after the date of grant.

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        We have applied the fair value recognition provisions of ASC 718 and FASB ASC 505, Equity , or ASC 505, to account for stock-based compensation for non-employees. Stock-based compensation related to non-employee awards is re-measured at each reporting period until the awards are vested and is estimated using an expected term equal to the remaining contractual term of the award. Compensation expense is recognized for the fair value of the consideration received, or the equity instruments issued, whichever is more reliably measurable. We recorded compensation expense for non-employee awards with graded vesting using an accelerated recognition model.

        We estimate the fair value of our stock-based awards to employees and non-employees using the Black-Scholes option pricing model, which requires the input of highly subjective assumptions, including:

        Due to the lack of a public market for the trading of our common stock and a lack of company specific historical and implied volatility data, we have based our estimate of expected volatility on the historical volatility of a group of comparable companies that are publicly traded. For these analyses, we selected representative companies from the life sciences industry with characteristics similar to ours, including enterprise value, risk profiles, position within the industry and historical share price information, sufficient to meet the expected life of the stock-based awards. We compute the historical volatility data using the daily closing prices for the selected companies' shares during the equivalent period of the calculated expected term of our stock-based awards. We will continue to apply this process until a sufficient amount of historical information regarding the volatility of our own stock price becomes available. We use a dividend yield of zero based on the fact that we have never declared cash dividends and have no current intention of paying cash dividends over the expected term of the option.

        As we do not have sufficient historical stock option activity data to provide a reasonable basis upon which to estimate the expected term of stock options granted to employees, we have estimated the expected life of our employee stock options using the "simplified" method, whereby the expected life equals the average of the vesting term and the original contractual term of the option. For non-employee options, we have determined the expected life based on the respective contractual life. The risk-free interest rates for periods within the expected life of the option are based on the U.S. Treasury yield curve in effect during the period the options were granted and with maturity dates equivalent to the expected term of the option.

        The fair value of each stock option granted to employees and directors was estimated on the date of grant using the Black-Scholes option-pricing model, with the following range of assumptions for the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016:

 
  Year Ended December 31,   Six Months Ended June 30,
 
  2014   2015   2015   2016

Risk free interest rate

  1.76% - 1.88%   1.76% - 1.86%     1.76 % 1.23% - 1.59%

Expected dividend yield

         

Expected term (in years)

  5.9 - 6.1   5.9 - 6.1     6.0   6.0 - 6.4

Expected volatility

  76.4% - 79.9%   72.3% - 74.7%     72.3 % 74.1% - 77.3%

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        The fair value of each non-qualified stock option granted to non-employees was estimated on the date of grant and at each revaluation date using the Black-Scholes option-pricing model, with the following range of assumptions, excluding performance-based awards, during the years ended December 31, 2014 and 2015, and six months ended June 30, 2015 and 2016:

 
  Year Ended December 31,   Six Months Ended June 30,
 
  2014   2015   2015   2016

Risk free interest rate

  2.15% - 2.18%   1.93% - 2.31%   1.93% - 2.31%   1.46% - 1.76%

Expected dividend yield

       

Expected term (in years)

  9.9 - 10.0   9.2 - 10.0   9.2 - 10.0   9.7 - 10.0

Expected volatility

  75.1% - 75.3%   75.1% - 79.9%   75.3% - 79.9%   78.4% - 81.0%

        We are also required to estimate forfeitures at the time of grant, and revise those estimates in subsequent periods if actual forfeitures differ from its estimates. The estimation of the number of awards that will ultimately vest requires judgment, and to the extent actual results or updated estimates differ from our current estimates, such amounts will be recorded as a cumulative adjustment in the period in which estimates are revised.

        The following table presents the grant dates of shares subject to awards from January 1, 2015 through the date of this prospectus, along with the corresponding exercise price for each option grant and our current estimate of the fair value per share of our common stock on each grant date, which we utilize to calculate stock-based compensation expense:

Date of Grant
  Number of Shares
Underlying Options
Granted
  Exercise Price
Per Share
  Fair Value of
Common Stock
on Grant Date
  Per Share
Estimated
Fair Value of
Award (1)
 

March 13, 2015

    372,000   $ 0.41   $ 0.41   $ 0.28  

December 10, 2015

    4,222,168   $ 0.41   $ 0.41   $ 0.27  

February 29, 2016

    2,660,000   $ 0.41   $ 0.41   $ 0.25  

March 10, 2016

    320,000   $ 0.41   $ 0.41   $ 0.27  

June 16, 2016

    1,095,000   $ 0.41   $ 0.56 (2) $ 0.40  

August 16, 2016

    6,020,000   $ 0.80   $ 0.80   $ 0.58  

(1)
The Per Share Estimated Fair Value of Award reflects the fair value of options as estimated at the date of grant using the Black-Scholes option-pricing model.

(2)
The fair value of common stock used for financial reporting purposes was determined based on a fair value assessment as of June 30, 2016.

        Stock-based compensation totaled approximately $0.1 million, $0.2 million, $0.1 million and $0.3 million for the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016. As of December 31, 2014, and 2015, and as of June 30, 2016, the total unrecognized compensation expense related to non-vested employee and non-employee stock options, net of related forfeiture estimates, was $0.2 million, $1.2 million, and $2.0 million, respectively. We expect to recognize our remaining stock based compensation expense over a weighted-average remaining vesting period of approximately three years. We expect our stock-based compensation expense for stock options granted to employees and non-employees to increase in future periods due to the potential increase in the value of our common stock and future option grants to new and current employees and consultants.

Determination of the Fair Value of Common Stock on Grant Dates

        Following the consummation of this offering, the fair value of our common stock will be determined based on the quoted market price of our common stock. We have historically granted stock options at exercise prices not less than the fair value of our common stock. Our board of directors

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determined the fair value of our common stock considering, in part, the work of an independent third-party valuation specialist. The board determined the estimated per share fair value of our common stock at various dates considering contemporaneous valuations performed in accordance with the guidance outlined in the American Institute of Certified Public Accountants Practice Aid, Valuation of Privately-Held Company Equity Securities Issued as Compensation , or Practice Aid.

        Our common and incentive security valuations were prepared using either an option-pricing method, or OPM, a probability-weighted expected return method, or PWERM, which used a combination of market approaches and an income approach to estimate our enterprise value or a hybrid method, which employs the concepts of the OPM and the PWERM merged into a single framework. The OPM treats common securities and preferred securities as call options on the total equity value of a company, with exercise prices based on the value thresholds at which the allocation among the various holders of a company's securities changes. Under this method, the common stock has value only if the funds available for distribution to equityholders exceeded the value of the preferred security liquidation preference at the time of the liquidity event, such as a strategic sale or a merger. The PWERM is a scenario-based methodology that estimates the fair value of common stock based upon an analysis of future values for the company, assuming various outcomes. The common stock values are based on the probability-weighted present value of expected future investment returns considering each of the possible outcomes available as well as the rights of each class of common, incentive and preferred securities. The future value of the common stock under each outcome is discounted back to the valuation date at an appropriate risk-adjusted discount rate and probability weighted to arrive at an indication of value for the common stock. The hybrid method is a PWERM where the equity value in one of the scenarios is calculated using an OPM. The foregoing valuation methodologies are not the only methodologies available and they will not be used to value our common stock once this offering is complete. We cannot make assurances as to any particular valuation for our common stock. Accordingly, investors are cautioned not to place undue reliance on the foregoing valuation methodologies as an indicator of future stock prices. We performed common stock valuations, with the assistance of an independent third-party valuation specialist, as of September 30, 2014, July 10, 2015 and December 31, 2015, which resulted in valuations of our common stock of $0.41 as of each of those dates and June 30, 2016, which resulted in a valuation of our common stock of $0.56. In addition, we performed a common stock valuation, with the assistance of an independent third-party valuation specialist, as of August 1, 2016, which resulted in a valuation of our common stock of $0.80 as of such date. In conducting the valuations, the independent third-party valuation specialist considered all objective and subjective factors that it believed to be relevant for each valuation conducted in accordance with the Practice Aid, including our best estimate of our business condition, prospects and operating performance at each valuation date. Other significant factors included:

    the prices of our preferred stock sold to outside investors in arm's length transactions, and the rights, preferences and privileges of our preferred stock as compared to those of our common stock, including the liquidation preferences of our preferred stock;

    our stage of development and business strategy and the material risks related to our business and industry;

    the valuation of publicly traded companies in the life sciences and biotechnology sectors, as well as recently completed mergers and acquisitions of guideline companies;

    our results of operations and financial position;

    the composition of, and changes to, our management team and board of directors;

    the lack of liquidity of our common stock;

    any external market conditions affecting the life sciences and biotechnology industry sectors;

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    the likelihood of achieving a liquidity event for the holders of our common stock and stock options, such as an initial public offering, or IPO, or a sale of our company, given prevailing market conditions; and

    the state of the IPO market for similarly situated privately held life sciences companies.

        The dates of our contemporaneous valuations have not always coincided with the dates of our stock option grants. In determining the exercise prices of the stock options set forth in the table above, our board of directors considered, among other things, the most recent valuation of our common stock and their assessment of additional objective and subjective factors that were relevant as of the grant dates. The additional factors considered when determining whether any changes in the fair value of our common stock had occurred between the most recent valuation and the grant dates included our stage of research and development, our operating and financial performance and current business conditions.

        The estimates of fair value of our common stock are highly complex and subjective. There are significant judgments and estimates inherent in the determination of the fair value of our common stock. These judgments and estimates include assumptions regarding our future operating performance, the time to completing an IPO or other liquidity event, the related valuations associated with these events, and the determinations of the appropriate valuation methods at each valuation date. The assumptions underlying these valuations represent management's best estimates, which involve inherent uncertainties and the application of management judgment. If we had made different assumptions, our stock-based compensation expense, net loss and net loss per share applicable to common stockholders could have been materially different.

Determination of Estimated Offering Price

        In July 2016, we selected underwriters for this offering. The midpoint of the range of the initial public offering price listed on the cover page of this prospectus as determined by us and the underwriters was $            per share. In comparison, our estimate of the fair value of our common stock was $            per share as of the                        valuation. We note that, as typical in initial public offerings, the range of the initial public offering price listed on the cover page of this prospectus was not derived using a formal determination of fair value, but was determined based upon discussions between us and the underwriters. Among the factors that were considered in setting this range were our prospects and the recent market prices of, and the demand for, publicly traded common stock of comparable companies.

        We believe that the difference between the fair value of our common stock as of                        and the midpoint of the range of the initial public offering price listed on the cover page of this prospectus is the result of these factors as well as the fact that the range of the initial public offering price listed on the cover page of this prospectus necessarily assumes that the initial public offering has occurred, a public market for our common stock has been created and our convertible preferred stock has converted into common stock in connection with the initial public offering. The range of the initial public offering price listed on the cover page of this prospectus therefore excludes any discount for lack of marketability of our common stock and any consideration of the preferences of our convertible preferred stock, which we factored into the                        contemporaneous valuation.

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Results of Operations

Comparison of the Six Months Ended June 30, 2015 and 2016

        The following table summarizes our results of operations for the six months ended June 30, 2015 and 2016, together with the dollar change in those items:

 
  Six Months Ended
June 30,
   
 
 
  Period-to-Period
Change
 
 
  2015   2016  
 
  (In thousands)
 

Revenue

  $ 2,177   $ 4,928   $ 2,751  

Operating expenses:

                   

Research & development

    6,566     11,462     4,896  

General & administrative

    1,010     2,376     1,366  

Total operating expenses

    7,576     13,838     6,262  

Loss from operations

    (5,399 )   (8,910 )   (3,511 )

Other expense, net

    (49 )   (952 )   (903 )

Net loss

  $ (5,448 ) $ (9,862 ) $ (4,414 )

    Revenue

        Revenue increased by $2.8 million to $4.9 million for the six months ended June 30, 2016, from $2.2 million for the six months ended June 30, 2015. This increase is primarily attributable to the recognition of a $3.0 million milestone payment from Merck in June 2016 and an increase of $0.7 million in connection with recognition of the remaining deferred revenue related to the upfront non-refundable, license fee earned at the expiration of the research term of the Merck Agreement, on March 31, 2016. These increases were offset in part by $0.8 million decrease in FTE revenue related to a decrease in the number of FTEs providing research and development services under the Merck Agreement and $0.1 million decrease related to lower reimbursable lab supply and reagent expenses for the six months ended June 30, 2016.

    Research and Development Expenses

        Research and development expenses increased by $4.9 million to $11.5 million for the six months ended June 30, 2016, from $6.6 million for the six months ended June 30, 2015. This increase is primarily attributable to $2.2 million increase in CRO and CMO expenses in connection with our pre-clinical studies and clinical trials for RA101495, $1.1 million increase in employee-related costs associated with salaries, bonus, benefits and non-cash stock-based compensation including costs for additional personnel to support our increased research and development activities, $0.9 million increase in facilities costs including rent, moving expenses related to our new facility, and depreciation expense, $0.4 million increase in consulting expenses and $0.3 million increase in lab-supply and reagent expenses.

    General and Administrative Expenses

        General and administrative expenses increased by $1.4 million to $2.4 million for the six months ended June 30, 2016, from $1.0 million for the six months ended June 30, 2015. The increase in general and administrative expenses was primarily attributable to $0.7 million increase in consulting and professional fees, including increased market research, accounting and audit fees, $0.5 million increase in employee-related costs, including salary, bonus, benefits and non-cash stock-based compensation for

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executive and administrative personnel including for additional personnel to support our increased activities, and approximately $0.2 million in increased facilities related costs and other related expenses.

    Other Expense, Net

        During the six months ended June 30, 2016, other expense, net, increased by $0.9 million to $1.0 million from $0.05 million for the six months ended June 30, 2015. This increase was primarily attributable to the increase in the fair value of the Series B-2 Preferred Stock Tranche Rights of $1.0 million recognized in the six months ended June 30, 2016 partially offset by a decrease of $0.1 million in interest expense that was recognized in the six months ended June 30, 2015 in connection with our convertible notes that were outstanding from April 2015 until the cancellation upon conversion into Series B-1 preferred stock in July 2015.

Comparison of the Years Ended December 31, 2014 and 2015

        The following table summarizes our results of operations for the years ended December 31, 2014 and 2015, together with the dollar change in those items:

 
  Year Ended
December 31,
   
 
 
  Period-to-Period
Change
 
 
  2014   2015  
 
  (In thousands)
 

Revenue

  $ 4,830   $ 4,094   $ (736 )

Operating expenses:

                   

Research & development

    10,016     15,217     5,201  

General & administrative

    1,924     2,233     309  

Total operating expenses

    11,940     17,450     5,510  

Loss from operations

    (7,110 )   (13,356 )   (6,246 )

Other income (expense), net

    1,607     (606 )   (2,213 )

Net loss before benefit from income taxes

    (5,503 )   (13,962 )   (8,459 )

Benefit from income taxes

    27     19     (8 )

Net loss

  $ (5,476 ) $ (13,943 ) $ (8,467 )

    Revenue

        Revenue decreased by $0.7 million to $4.1 million for the year ended December 31, 2015, from $4.8 million for the year ended December 31, 2014. This decrease was primarily attributable to a decrease of $0.4 million in FTE revenue related to a decrease in the number of FTEs providing research and development services under the Merck Agreement during 2015. In addition, recognition of deferred revenue related to the upfront non-refundable, technology license fee decreased $0.2 million due to the extension in an April 2015 amendment of the Merck Agreement. Revenue related to reimbursable lab supply and reagent also decreased by $0.1 million.

    Research and Development Expenses

        Research and development expenses increased by $5.2 million to $15.2 million for the year ended December 31, 2015, from $10.0 million for the year ended December 31, 2014. This increase was primarily due to $3.7 million increase in CRO and CMO expenses for our ongoing pre-clinical studies and a Phase 1 clinical trial for RA101495, $1.1 million increase in employee-related costs including increased salary, bonus, benefits and non-cash stock-based compensation for additional personnel to

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support our increased activities and $0.4 million in increased facilities-related costs and depreciation expense.

    General and Administrative Expenses

        General and administrative expenses increased by $0.3 million to $2.2 million for the year ended December 31, 2015 from $1.9 million for the year ended December 31, 2014. The increase in general and administrative expenses was primarily attributable to an increase of $0.3 million in consulting and professional fees associated with general corporate activities.

    Other Income (Expense), net

        Other income (expense), net decreased by $2.2 million to $0.6 million in other expense, net for the year ended December 31, 2015 from $1.6 million in other income, net for the year ended December 31, 2014. This decrease was primarily attributable to a decrease of $1.5 million in other income recognized in the year ended December 31, 2014 related to the increase in fair value of the Series A Preferred Stock Tranche Rights, an increase of $0.1 million in interest expense due to convertible notes that were outstanding from April 2015 until the conversion into Series B-1 preferred stock in July 2015, and an increase of $0.6 million in other expense related to the loss upon debt extinguishment of convertible notes.

Liquidity and Capital Resources

Overview

        We have funded our operations from inception through June 30, 2016 primarily through gross proceeds of $86.0 million from the sale of our preferred stock and the issuance of convertible notes that subsequently converted into preferred stock and $17.5 million from payments from Merck in connection with the Merck Agreement. As of June 30, 2016, we had cash and cash equivalents of $40.2 million.

Cash Flows

        The following table provides information regarding our cash flows for the years ended December 31, 2014 and 2015 and the six months ended June 30, 2015 and 2016:

 
  Years Ended
December 31,
  Six Months Ended
June 30,
 
 
  2014   2015   2015   2016  
 
  (In thousands)
 

Net cash (used in) provided by:

                         

Operating activities

  $ (7,551 ) $ (12,017 ) $ (5,257 ) $ (5,324 )

Investing activities

    (825 )   (1,664 )   (22 )   (3,088 )

Financing activities

    8,644     29,028     4,894     29,272  

Net increase (decrease) in cash

  $ 268   $ 15,347   $ (385 ) $ 20,860  

    Net Cash Used in Operating Activities

        The use of cash in all periods resulted primarily from our net losses adjusted for non-cash charges and changes in components of working capital.

        Net cash used in operating activities of $5.3 million during the six months ended June 30, 2016 increased by $67,000 compared to the six months ended June 30, 2015. The $67,000 increase in net cash used in operations was primarily due to an increase in our net loss of $4.4 million for the six

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months ended June 30, 2016, as compared to the six months ended June 30, 2015 due to an increase in our operating expenses in connection with our lead program RA101495 and other research and development pipeline programs, partially offset by an increase in accrued expenses and accounts payable of $4.9 million and a decrease in prepaid expenses and other current assets of approximately $0.5 million.

        Net cash used in operating activities was $12.0 million during the year ended December 31, 2015 compared to $7.6 million during the year ended December 31, 2014. The increase in net cash used in operations was primarily due to an increase in our net loss of $8.5 million for the year ended December 31, 2015, as compared to the year ended December 31, 2014 due to an increase in our operating expenses in connection with our lead program RA101495 and other research and development pipeline.

    Net Cash Used in Investing Activities

        Net cash used in investing activities was $3.1 million for the six months ended June 30, 2016 compared to $22,000 during the six months ended June 30, 2015. The increase in cash used in investing activities was primarily due to increased purchases of property and equipment related to the cost of new leasehold improvements in our new leased facility in Cambridge, Massachusetts.

        Net cash used in investing activities was $1.7 million during the year ended December 31, 2015 compared to $0.8 million during the year ended December 31, 2014. The increase in cash used in investing activities was primarily due to the security deposit for our new lease in Cambridge, Massachusetts.

    Net Cash Provided by Financing Activities

        Net cash provided by financing activities was $29.3 million during the six months ended June 30, 2016 compared to $4.9 million during the six months ended June 30, 2015. The increase in cash provided by financing activities was due to net proceeds of $29.2 million related to the issuance of Series B-2 preferred stock and proceeds of $43,000 from the exercise of stock options during the six months ended June 30, 2016.

        Net cash provided by financing activities was $29.0 million during the year ended December 31, 2015 compared to $8.6 million during the year ended December 31, 2014. The increase in cash provided by financing activities was attributable to net proceeds of $28.9 million related to the issuance of convertible notes and Series B-1 preferred stock during the year ended December 31, 2015.

Funding Requirements

        We expect our expenses to increase in connection with our ongoing activities, particularly as we initiate Phase 2 clinical trials of RA101495 in PNH, initiate clinical trial of RA101495 in additional indications rMG and LN, advance the development of pipeline programs, initiate new research and preclinical development efforts and seek marketing approval for any product candidates that we successfully develop. In addition, if we obtain marketing approval for any of our product candidates, we expect to incur significant commercialization expenses related to establishing sales, marketing, distribution and other commercial infrastructure to commercialize such products. Furthermore, upon the closing of this offering, we expect to incur additional costs associated with operating as a public company. Accordingly, we will need to obtain substantial additional funding in connection with our continuing operations. If we are unable to raise capital when needed or on attractive terms, we would be forced to delay, reduce or eliminate our research and development programs or future commercialization efforts.

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        We believe that the anticipated net proceeds from this offering, together with our existing cash and cash equivalents as of June 30, 2016, will enable us to fund our operating expenses and capital expenditure requirements through                        .

        We have based our projections of operating capital requirements on assumptions that may prove to be incorrect and we may use all of our available capital resources sooner than we expect. Because of the numerous risks and uncertainties associated with the development and commercialization of RA101495 and the research, development and commercialization of other potential product candidates, we are unable to estimate the exact amount of our operating capital requirements. Our future capital requirements will depend on many factors, including:

    the scope, progress, timing, costs and results of clinical trials of RA101495;

    research and preclinical development efforts for any future product candidates that we may develop;

    our ability to enter into and the terms and timing of any collaborations, licensing agreements or other arrangements;

    the number of future product candidates that we pursue and their development requirements;

    the outcome, timing and costs of seeking regulatory approvals;

    the costs of commercialization activities for any of our product candidates that receive marketing approval to the extent such costs are not the responsibility of any future collaborators, including the costs and timing of establishing product sales, marketing, distribution and manufacturing capabilities;

    subject to receipt of marketing approval, revenue, if any, received from commercial sales of our current and future product candidates;

    our headcount growth and associated costs as we expand our research and development and establish a commercial infrastructure;

    the costs of preparing, filing and prosecuting patent applications, maintaining and protecting our intellectual property rights and defending against intellectual property related claims; and

    the costs of operating as a public company.

        Identifying potential product candidates and conducting preclinical studies and clinical trials is a time-consuming, expensive and uncertain process that takes many years to complete, and we may never generate the necessary data or results required to obtain marketing approval and achieve product sales. In addition, our product candidates, if approved, may not achieve commercial success. Accordingly, we will need to continue to rely on additional financing to achieve our business objectives. Adequate additional financing may not be available to us on acceptable terms, or at all.

        Until such time, if ever, as we can generate substantial product revenues, we expect to finance our cash needs through a combination of equity offerings, debt financings, collaborations, strategic alliances and licensing arrangements. To the extent that we raise additional capital through the sale of equity or convertible debt securities, your ownership interest will be diluted, and the terms of these securities may include liquidation or other preferences that adversely affect your rights as a common stockholder. Debt financing, if available, may involve agreements that include covenants limiting or restricting our ability to take specific actions, such as incurring additional debt, making capital expenditures or declaring dividends.

        If we raise funds through additional collaborations, strategic alliances or licensing arrangements with third parties, we may have to relinquish valuable rights to our technologies, future revenue streams, research programs or product candidates or to grant licenses on terms that may not be

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favorable to us. If we are unable to raise additional funds through equity or debt financings when needed, we may be required to delay, limit, reduce or terminate our product development or future commercialization efforts or grant rights to develop and market product candidates that we would otherwise prefer to develop and market ourselves.

Contractual Obligations

        The following table summarizes our outstanding contractual obligations as of payment due date by period at December 31, 2015:

 
  Total   Less than
1 Year
  1 to 3 Years   3 to 5 Years   More than
5 Years
 
 
  (in thousands)
 

Operating Leases

  $ 9,781   $ 868   $ 2,580   $ 2,831   $ 3,502  

Total

  $ 9,781   $ 868   $ 2,580   $ 2,831   $ 3,502  

        We enter into contracts in the normal course of business with CROs and clinical sites for the conduct of clinical trials, professional consultants for expert advice and other vendors for clinical supply manufacturing or other services. These contracts are not included in the table above as they provide for termination on notice, and therefore are cancelable contracts and do not include any minimum purchase commitments.

Off-Balance Sheet Arrangements

        We did not have during the periods presented, and we do not currently have, any off-balance sheet arrangements, as defined under the applicable regulations of the SEC.

Recent Accounting Pronouncements

        Refer to Note 2, "Summary of Significant Accounting Policies," in the accompanying notes to the consolidated financial statements for a discussion of recent accounting pronouncements. There were no new accounting pronouncements adopted during 2015 and the six months ended June 30, 2016 that had a material effect on our financial statements.

The JOBS Act

        The Jumpstart our Business Startups Act of 2012, or the JOBS Act, permits an "emerging growth company" such as us to take advantage of an extended transition period to comply with new or revised accounting standards applicable to public companies. We have chosen to "opt out" of this provision and will comply with new or revised accounting standards as required when they are adopted. This decision to opt out of the extended transition period under the JOBS Act is irrevocable.

Qualitative and Quantitative Disclosures about Market Risk

        We are exposed to market risk related to changes in interest rates. As of December 31, 2015 and June 30, 2016, we had cash and cash equivalents of $19.4 million and $40.2 million, respectively, consisting primarily of money market funds. Our primary exposure to market risk is interest rate sensitivity, which is affected by changes in the general level of U.S. interest rates, particularly because our cash equivalents are in held in short-term money market funds. Due to short-term duration of our investment portfolio and the low risk profile of our investments, an immediate 100 basis point change in interest rates would not have a material effect on the fair market value of our portfolio.

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BUSINESS

        We are a clinical-stage biopharmaceutical company using our proprietary peptide chemistry platform to develop novel therapeutics for the treatment of serious diseases that are caused by excessive or uncontrolled activation of the complement system, a critical component of the immune system. Inappropriate activation of the complement system can quickly turn it from a beneficial defense system to an aggressor that plays a major role in immune and inflammatory diseases. We are developing our lead product candidate, RA101495, a convenient self-administered subcutaneous, or SC, injection, which is an injection into the tissue under the skin, for the treatment of paroxysmal nocturnal hemoglobinuria, or PNH. PNH is a rare, chronic, life-threatening, blood disorder where red blood cells are mistakenly attacked and destroyed by the complement system. We expect to initiate our Phase 2 clinical program for RA101495 in PNH patients in the first quarter of 2017 and release data in the second half of 2017. We are also developing RA101495, administered SC, to treat other debilitating complement-mediated diseases such as refractory generalized myasthenia gravis, or rMG, and lupus nephritis, or LN. We expect to initiate a Phase 2 clinical trial with RA101495 for rMG and a Phase 1b clinical trial in LN in the second half of 2017.

        RA101495 is a potent synthetic macrocyclic peptide inhibitor of complement component 5, or C5. C5 plays a key role in the rupture and destruction of red blood cells, or hemolysis, associated with PNH. Inhibition of C5 is a clinically validated target for the control and suppression of complement-induced hemolysis in patients with PNH. Currently the only drug approved to treat PNH is eculizumab (Soliris), a humanized monoclonal antibody that acts as a C5 inhibitor and is administered biweekly by intravenous, or IV, infusion by healthcare professionals. Eculizumab had reported annual sales of $2.6 billion in 2015 for its two approved indications, PNH and aHUS. However, loss of hemolysis control, or breakthrough hemolysis, has been observed in patients treated with eculizumab, particularly towards the end of its two-week administration cycle. If approved for PNH, we believe RA101495, when self-administered SC on a more frequent basis, will provide sustained and improved disease control, which reduces the risk of breakthrough hemolysis, and offers PNH patients more convenience and flexibility compared with eculizumab.

        The complement system, which consists of approximately 30 interacting proteins, offers a target-rich opportunity for us to leverage our Extreme Diversity platform technology that was pioneered by Nobel Laureate Dr. Jack Szostak and allows us to inhibit certain uncontrolled complement pathway factors involved in complement-mediated diseases. Our platform allows us to produce synthetic macrocyclic peptides that combine the diversity and specificity of antibodies with the pharmacological properties of small molecules. The highly specific and stable peptide-like molecules generated are much smaller than monoclonal antibodies and other biologics, enabling more convenient routes of administration while still offering the opportunity to target protein-protein interactions, a type of molecular interaction that historically has been difficult to address with other small molecules. We believe our technology will allow us to pursue challenging targets for which only monoclonal antibodies have been developed.

        We are developing a portfolio of drug candidates designed to treat a variety of complement-mediated diseases, including rare blood, neurologic, ophthalmologic, renal and inflammatory diseases. We also have preclinical programs targeting selective inhibition of other complement factors for diseases with no approved therapies, including Factor D for ophthalmologic and renal diseases, an oral, small molecule C5 inhibitor and C1s for certain autoimmune and central nervous system, or CNS, diseases. In addition to our focus on developing novel therapeutics to treat complement-mediated diseases, we have validated our Extreme Diversity platform by successfully identifying and delivering orally-available cyclic peptides for a non-complement cardiovascular target with a large market opportunity in a collaboration with Merck & Co., Inc., or Merck.

        We were founded by Dr. Douglas A. Treco, an experienced rare disease drug developer and our chief executive officer and president, and by Dr. Jack Szostak, a pioneer in the field of mRNA display

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from the Massachusetts General Hospital, an affiliate of Harvard University, and Howard Hughes Medical Institute. Dr. Szostak currently serves as the chairman of our scientific advisory board and a consultant to us. Our management team consists of drug discovery, development and commercialization experts with experience in translating scientific discoveries into innovative approved products for rare diseases, including Replagal for Fabry disease, Elaprase for Hunter syndrome, and Vpriv for Gaucher's disease, as well as Dynepo for chronic kidney disease, and immunology products, including Rituxan and Actemra.

Our Pipeline

        The following table summarizes key information about our lead program and other pipeline programs. We hold worldwide commercialization rights to all of our product candidates, except for our non-complement cardiovascular target with a large market opportunity, which is subject to our collaboration with Merck.

Program
  Indication (1)   Description   Status
RA101495 for C5 Inhibition   PNH (SC)   Phase 1 with single ascending dose and multiple dose in healthy volunteers   Completed Phase 1 second quarter 2016

 

 

 

 

Phase 2 with eculizumab-naïve patients, patients switched from eculizumab, and eculizumab inadequate responders

 

Planned Phase 2 commencing first quarter of 2017, and data by second half of 2017

 

 

rMG (SC)

 

Phase 2 with rMG patients

 

Program to be initiated with planned Phase 2 commencing second half of 2017, (2)

 

 

LN (SC)

 

Phase 1b with LN patients

 

Program to be initiated with planned Phase 1b commencing second half of 2017, (2)

Factor D Inhibition

 

Dry AMD/GA (intravitreal, or injection into the eye)

 

Preclinical program

 

Preclinical activities in process

 

 

Orphan renal diseases DDD and C3GN

 

Preclinical program

 

Preclinical activities in process

Oral C5 Inhibitor

 

PNH, rMG, LN and CNS Diseases

 

Preclinical program

 

Preclinical activities in process

C1s Inhibition

 

Autoimmune/CNS Diseases

 

Preclinical program

 

Discovery activities in process

Merck Collaboration (3)

 

Non-complement cardiovascular target with large market opportunity

 

Collaboration agreement

 

Lead oral peptide class selected June 2016; Merck's preclinical activities in process

(1)
In the table above, we refer to various indications as follows: PNH: paroxysmal nocturnal hemoglobinuria; rMG: refractory generalized myasthenia gravis; LN: lupus nephritis; AMD: age-related macular degeneration; GA: geographic atrophy; DDD: dense deposit disease; C3GN: C3 glomerulonephritis; and CNS: central nervous system.

(2)
We intend to leverage our work in PNH, including the chemistry, manufacturing and controls, or CMC, and preclinical data packages, to advance our programs for RA101495 for rMG and LN, which have not yet been initiated.

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(3)
For additional information about our collaboration with Merck, see the section titled "Management's Discussion and Analysis of Financial Conditions and Results of Operations—Financial Overview."

Our Strategy

        Our goal is to become a leading biopharmaceutical company that transforms the lives of patients with serious complement-mediated diseases by combining our expertise in complement with our leadership in macrocyclic peptide technology. To achieve this goal, we are executing on the following strategy:

    Advance our lead program, RA101495 subcutaneous, through clinical development.   In our Phase 2 clinical program, we intend to establish clinical proof-of-concept by using convenient SC self-administration in PNH patients. We plan to evaluate various hematologic parameters in PNH patients previously untreated with eculizumab, whom we refer to as naïve patients, patients currently treated satisfactorily with eculizumab, whom we refer to as switch patients, and patients who have an inadequate response to eculizumab. Designed to be a SC self-administered product, we believe RA101495 will provide improved control of hemolysis, reduce the risk of breakthrough hemolysis, and offer PNH patients greater convenience and flexibility. We expect to initiate our Phase 2 clinical program in PNH patients in the first quarter of 2017 and to release data in the second half of 2017.

    Efficiently advance clinical development of RA101495 for other serious complement-mediated diseases, such as rMG and LN.   We intend to leverage our work in PNH, including the CMC and preclinical data packages, to advance RA101495 for other complement-mediated diseases, initially including rMG and LN. There is strong mechanistic and clinical evidence for a beneficial effect of C5 inhibition in patients with rMG, an autoimmune disease characterized by muscle weakness, and in LN, an autoimmune disease characterized by kidney inflammation and failure. We have established relationships with key opinion leaders in both fields to design clinical development plans. We expect to initiate a Phase 2 clinical trial with RA101495 for rMG and a Phase 1b clinical trial in LN in the second half of 2017.

    If approved, commercialize RA101495 globally either independently or by collaborating selectively in certain geographies.   We have worldwide development and commercialization rights to RA101495. We intend to independently pursue the approval and commercialization of RA101495 in PNH patients in the United States and Europe. Outside of the United States and Europe, we may pursue the approval and commercialization of RA101495 for PNH patients either independently or in collaboration with others. We intend to develop and commercialize RA101495 for other indications independently or through collaborations with third parties.

    Pursue clinical development of our pipeline programs targeting additional serious complement-mediated diseases with limited treatment options.   In addition to developing RA101495 for PNH, rMG and LN, we are developing our pipeline programs to selectively target inhibition of other complement factors, including Factor D administered by intravitreal injection, a clinically validated approach for dry AMD, Factor D administered SC for orphan renal diseases, DDD and C3GN, and C1s inhibitors for certain autoimmune and CNS diseases. We are also developing an oral small molecule C5 inhibitor as a follow-on product. We plan to advance our pipeline programs on our own or by opportunistically collaborating with third parties. In addition to our current pipeline, we also believe the target-rich complement system offers us the opportunity to discover other innovative drug candidates.

    Enhance our leadership position in the field of macrocyclic peptide technology through continued development of our Extreme Diversity platform.   We have validated our Extreme Diversity platform by successfully identifying and delivering orally-available cyclic peptides for a non-complement cardiovascular target with a large market opportunity in a collaboration with Merck. We intend to enhance our proprietary drug discovery capabilities by expanding the chemical diversity of our

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      peptide libraries to identify molecules with more favorable drug-like properties. We are also using our novel macrocyclic peptides to guide the development of next-generation, orally-available small molecule drugs that bind to and inhibit targets in similar ways as the original peptides.

The Complement System

        The complement system is a critical component of the immune system. The immune system protects the body by recognizing and removing bacteria, viruses and other infectious agents, collectively referred to as pathogens. The complement system consists of approximately 30 interacting proteins that are produced primarily by the liver and circulate in the blood and through the body's tissues. Activation of the complement system leads to a series of enzyme reactions that produce factors that both directly kill pathogens and recruit immune cells to sites of infection. The complement system is activated in three distinct pathways, referred to as the classical pathway, the lectin pathway and the alternative pathway. Each pathway is activated by different triggers associated with the presence of an abnormal cell or pathogen. Irrespective of the activation event, these pathways converge on C5, triggering a series of enzyme reactions that leads to the formation of a pore in the target cell, which is known as the membrane attack complex, or MAC. In its physiological role, this is an extremely potent agent causing the rupture and destruction of bacterial cell walls.

        Normally the complement system is tightly regulated to restrict activation to the site of infection and avoid injury to host tissues, or "self" cell surfaces. Under conditions of excessive or uncontrolled activation, the complement system plays a key role in a range of debilitating autoimmune and inflammatory diseases. In these conditions, the complement system causes damage:

    directly through the inappropriate formation of the MAC and destruction of healthy tissue or by the activation of detrimental pathways within cells;

    indirectly by signaling other elements of the immune system to attack healthy tissues; or

    passively through deposition of complement factors in tissues.

        The following figure depicts the key elements, proteins and factors within the complement system cascade. Many of these proteins are abbreviated with a "C" followed by a number. For example, C5 denotes complement component 5. Others are called "Factor" followed by a letter, such as Factor B. As depicted in Figure 1 below, irrespective of the activation event, these pathways converge on C5, triggering a series of enzyme reactions that lead to the cleavage of C5 into C5a and C5b. C5b then binds to C6, C7, C8 and C9 to form a MAC.

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Figure 1. Schematic diagram of the complement system cascade.

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Our Approach

        There are numerous potential therapeutic targets in the complement cascade, and inhibiting the cascade at different points may be beneficial to treat different conditions depending on the disease biology. Inhibition of C5 cleavage effectively blocks generation of C5a and MAC regardless of the specific pathway involved in complement activation. This approach of inhibiting C5 cleavage is most relevant to diseases with significant MAC deposition resulting in tissue injury, as is the case for PNH, rMG, and LN. In other conditions, the tissue injury is related to activation of a specific pathway of complement, such as kidney diseases like C3 glomerulopathies, in which tissue injury may be mediated by deposition of complement component C3 following uncontrolled activation of the alternative pathway. In this case, selective inhibition of the alternative pathway by targeting a key enzyme in the alternative pathway, Factor D, may block C3 deposition while preserving the capacity of the classical and lectin pathways of complement to continue to fight infection. The classical pathway is activated when an antibody binds to the surface of a pathogen, and recruits a complex of C1q, C1r, and C1s, and we believe that inhibition of C1s may be efficacious for treatment of certain autoimmune and CNS diseases.

        Our pipeline of product candidates was discovered using our Extreme Diversity platform, a proprietary macrocyclic peptide chemistry technology pioneered by Nobel Laureate Dr. Jack Szostak. Our platform allows us to produce synthetic macrocyclic peptides that combine the diversity and specificity of antibodies with the pharmacological properties of small molecules. This platform allows us to generate highly specific and stable cyclic peptides that are much smaller than monoclonal antibodies and other biologics. Traditional peptides have been difficult to develop into drugs due to their susceptibility to degradation, limiting their circulating half-life, and lack of structural rigidity, limiting their potency and specificity. We have developed our Extreme Diversity platform to efficiently discover synthetic macrocyclic peptides that have greater structural rigidity and are less prone to degradation.

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We believe our synthetic macrocyclic peptides will be deliverable through more convenient routes of administration than monoclonal antibodies due to much greater bioavailability.

        The complement system offers a number of particularly attractive targets where we can apply our platform technology to disrupt protein-protein interactions or produce highly specific enzyme inhibitors. We are initially developing a portfolio of drug candidates to treat a variety of complement-mediated diseases, including rare blood, neurologic, ophthalmologic, renal and inflammatory diseases.

Our Programs

        Our lead product candidate, RA101495, is a potent synthetic macrocyclic peptide inhibitor of C5 formulated for daily SC administration that we are initially developing for the treatment of PNH. We expect to initiate our Phase 2 clinical program for RA101495 in PNH patients in the first quarter of 2017 and to release data in the second half of 2017.

        In addition to developing RA101495 for PNH, we are also developing RA101495, administered SC, to treat other serious complement-mediated diseases such as rMG and LN. In the second half of 2017, we expect to initiate a Phase 2 clinical trial with RA101495 for rMG and a Phase 1b clinical trial in LN. In addition to RA101495 and our collaboration with Merck, we have discovery and preclinical programs targeting selective inhibition of other complement factors, including Factor D administered by intravitreal injection for dry AMD, Factor D administered SC for DDD and C3GN, an oral, small molecule C5 inhibitor, and C1s inhibitors for certain autoimmune and CNS diseases.

RA101495 for Paroxysmal Nocturnal Hemoglobinuria

Background

        PNH is a rare, chronic, debilitating, acquired blood disorder that is most frequently diagnosed in early adulthood and usually continues throughout the life of the patient. Some of the prominent symptoms of PNH include severe anemia, a condition that results from having too few healthy red blood cells, severe abdominal pain, severe headaches, back pain, excessive weakness and fatigue. If not treated, PNH results in the death of approximately 35% of affected individuals within five years of diagnosis, and 50% of affected individuals within 10 years of diagnosis, primarily due to the formation of life-threatening blood clots inside the blood vessels, or thrombosis. We estimate that there are approximately 16,000 PNH patients worldwide. Eculizumab, the only drug currently approved to treat PNH, had reported worldwide sales of approximately $2.6 billion in 2015 for its two approved indications. A third-party study estimated that, as of 2015, the cost per year for treatment with eculizumab was approximately $543,000 in adults.

        Certain PNH patients acquire a genetic mutation that prevents the normal attachment of complement regulatory proteins to the membranes of blood cells. On normal cells, these proteins are critical inhibitors of complement activity and provide one means of distinguishing host cells from invading pathogens. The absence of these proteins results in the accumulation of a complement protein called C3b, which leads to cleavage of C5 and the deposition of the MAC on essentially all blood cells, including red blood cells and platelets. Red blood cells are particularly susceptible to lysis by MAC, resulting in their destruction and release of hemoglobin, leading to anemia. Uncontrolled activation of complement on platelets can promote thrombosis which is the most common cause of death in PNH patients. Other serious and potentially life-threatening complications of PNH include high blood pressure in the lungs and damage to the kidneys.

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Current Therapies and Their Limitations

        The only approved disease-modifying therapy is eculizumab, marketed under the name Soliris by Alexion Pharmaceuticals. Eculizumab is a monoclonal antibody that binds C5 and prevents its cleavage to C5a and C5b, thus blocking a key step in the complement activation pathway. Eculizumab prevents hemolysis, reduces the risk of thrombosis, and reduces the overall mortality rate in PNH patients to less than 3% over three years. Eculizumab is administered intravenously by healthcare professionals at biweekly intervals. Treatment duration is indefinite as the management of PNH requires ongoing chronic treatment. While eculizumab has demonstrated that inhibition of C5 cleavage results in improved clinical outcomes, breakthrough hemolysis has been observed to occur in a subset of patients in the last few days of each bi-monthly eculizumab treatment period. Such breakthrough hemolysis episodes are associated with worsening anemia and other symptoms of PNH. Furthermore, the recommended dosing regimen of eculizumab for PNH is 600 mg weekly for four weeks, followed by 900 mg on week five and 900 mg every two weeks thereafter. However, to address breakthrough hemolysis, a proportion of patients require higher off-label doses or more frequent dosing, leading to higher costs or further inconvenience.

Potential Benefits of Our Approach

        RA101495 is a potent synthetic macrocyclic peptide inhibitor of C5, which is a clinically validated target for patients with PNH. We are developing RA101495 as a SC formulation packaged as a convenient, self-administered product that can be administered in a small daily, or less frequent, such as weekly, dose. We believe this approach will facilitate sustained hemolysis suppression, greatly reducing the possibility of breakthrough hemolysis. In addition, we believe self-administration will alleviate the significant time and cost burden associated with regular intravenous infusions by healthcare professionals, as well as reduce complications associated with IV infusions, including infections, thrombosis, and loss of venous access.

        RA101495 is designed to bind C5 and block generation of C5a, C5b and MAC, potentially reducing hemolysis in humans to similar levels as eculizumab and allowing physicians to treat PNH with the same therapeutic rationale as the approved monoclonal antibody. Also, RA101495 binds to a site on C5 that is distinct from that of eculizumab, potentially conferring additional benefits, including the treatment of patients with R885H/C mutations, a population of PNH patients that does not respond to eculizumab. Importantly, RA101495 also blocks interaction of C5b with C6 and the formation of the MAC. For more information, see the figure in the section titled "—The Complement System." We believe this feature of directly blocking MAC assembly would be a differentiating property of RA101495 that may be beneficial to patients in hypercoagulative and inflammatory states, such as infection, sepsis and trauma.

        In addition, RA101495 is a synthetic product, and we expect that it can be produced at commercial scale at lower cost than biologics and monoclonal antibodies. As a synthetic, non-biologic product, RA101495 has essentially no risk for contamination by viruses and animal cell products.

Clinical Development

        We have completed a Phase 1 clinical trial of RA101495 in healthy volunteers in Australia. We expect to initiate our Phase 2 clinical program in PNH patients in the first quarter of 2017, and to release data in the second half of 2017.

Phase 1 Clinical Trial in Healthy Volunteers

        We have completed a Phase 1 randomized, double-blind, placebo controlled clinical trial of RA101495 in healthy volunteers to assess the safety, tolerability, pharmacokinetics, or PK (the activity of a drug after it enters the body of the patient), and pharmacodynamics, or PD (the effect of a drug on the target of interest and the patient), of RA101495 following single- and multiple-dose SC

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administration. In the Phase 1 trial, PK assessment focused on the concentration of drug in the plasma, and PD assessment focused on the suppression of hemolysis and complement activity. The results from this trial were presented at the European Hematology Association meeting on June 10, 2016.

Results from the Phase 1 Trial

        In healthy volunteers, we observed the following in subjects treated with RA101495, as compared to placebo:

    highly predictable, dose dependent PK after single and multiple dose SC injections;

    maintenance of robust ex vivo hemolysis suppression and complement inhibition with daily SC dosing;

    near-complete suppression of ex vivo hemolysis and complement activity after a single SC dose; and

    an acceptable safety and tolerability profile with no serious adverse events reported.

Single Ascending Dose

        We conducted a randomized, placebo-controlled, double-blind, Phase 1 clinical trial in healthy volunteer subjects to assess safety, tolerability, PK, and PD following a single administration of RA101495 at 0.05, 0.1, 0.2, or 0.4 mg/kg. Twenty-two subjects were enrolled into four dose cohorts. Within each dose cohort, subjects were randomized to RA101495 or placebo. The trial design schematic is shown in Figure 2.

        Since complement inhibition is recognized to increase the risk for infection with Neisseria meningitides , all subjects received ciprofloxacin prophylactically during the trial. Subjects in the highest dose cohort, cohort 4, also received vaccination against Neisseria meningitides. Blood samples were taken at pre-dose, and post-dose at 15 minutes, one hour, three hours, six hours, 12 hours, 24 hours and 48 hours in clinic and at each follow-up visit for PK and PD assessments.

Figure 2. Trial design of single-ascending dose cohorts in healthy volunteers.

GRAPHIC

    Pharmacokinetics

        As shown in Figure 3, the maximum concentrations, or C max , of RA101495 achieved in subjects were highly consistent with the predicted values from a simulated model. We observed a linear relationship between the measured C max and dose, confirming dose-dependent exposure to the

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compound. The approximate terminal half-life across all subject cohorts was seven days, which we believe will allow for daily, or less frequent, dosing.

Figure 3. Pharmacokinetics of RA101495 following single SC administration in healthy volunteers.

GRAPHIC

        Plasma concentrations of RA101495 were predicted by computer modeling, as shown in the left panel of Figure 3, and measured directly by Liquid Chromatography-High-Resolution Mass Spectrometry, or LC-HRMS, as shown in the right panel of Figure 3.

    Pharmacodynamics

        After a single dose, we observed that RA101495 achieved rapid, dose-dependent inhibition of ex vivo hemolysis and complement activity in all subjects, as measured in the three assays shown in Figure 4.

        We observed the maximum inhibitory effect of RA101495 on hemolysis and complement activity within three to six hours of dosing across all cohorts, and greater than 90% suppression of hemolysis was maintained over four days in some subjects who received a single dose of 0.4 mg/kg RA101495.

Figure 4. Evaluation of hemolysis and complement activity in plasma samples from healthy volunteers following a single administration of RA101495.

GRAPHIC

        Red blood cells from healthy volunteers do not induce C5 activation due to protective factors normally expressed on their surface. To test the ability of RA101495 to suppress hemolysis, plasma from healthy volunteers was tested using two assays to evaluate hemolysis of antibody-sensitized sheep red blood cells, or sRBC. The first measured direct hemolysis of sRBCs in 1% plasma from subjects, as shown in the left panel of Figure 4. The second assay measured the concentration of plasma required

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to hemolyse 50% of the sRBCs in the assay, a value called CH50, as shown in the middle panel of Figure 4. The third assay measured complement activity by measuring MAC deposition when plasma samples were exposed to a surface known to activate the alternative pathway of complement, as shown in the right panel of Figure 4.

    Safety and Tolerability

        In all dose groups, we observed that single SC doses of RA101495 were well tolerated in healthy volunteers. Injection site erythema, or ISE, was observed in three subjects at the highest dose and was mild (grade 1) with no pain, induration, tenderness or swelling and resolved spontaneously within two to five hours post-injection. No clinically significant changes were observed in vital signs, physical examination or clinical laboratory parameters, including hematology, blood chemistry, coagulation, urinalysis and ECGs.

Multiple Dose

        In the second part of our randomized, placebo-controlled, double-blind, Phase 1 clinical trial, we assessed the safety, tolerability, PK and PD of RA101495 following daily administration at a dose of 0.2 mg/kg for seven days. Six subjects were enrolled and randomized to receive 0.2 mg/kg of RA101495 daily for seven days (four subjects), or placebo (two subjects), and were followed for four weeks to assess safety and collect PK and PD data.

        As in the highest single ascending dose cohort, subjects receiving RA101495 received ciprofloxacin for seven days and were vaccinated to prevent Neisseria meningitides infection. Blood samples were taken at pre-dose, and post-dose at three hours and six hours on each dosing day and at each follow-up visit for PK and PD assessments.

    Pharmacokinetics

        As shown in Figure 5, measured drug levels were consistent with predicted values from a PK model generated using data from non-human primate studies and single- and multi-dose data from the Phase 1 clinical trial. Plasma levels commenced with the PK model across all subjects, with minimal variability in exposure. At a dose of 0.2 mg/kg, RA101495 concentrations in plasma are expected to reach steady-state by day 11 (without a loading dose).

Figure 5. Pharmacokinetics of RA101495 in healthy volunteers following daily SC administration of 0.2mg/kg dose of RA101495 for seven days

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        Plasma concentrations of RA101495 were measured directly by LC-HRMS, as shown in the right panel of Figure 5.

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    Pharmacodynamics

        RA101495 exhibited rapid and sustained inhibition of both classical and alternative pathways of complement. We observed that inhibition of hemolysis was maintained at greater than or equal to 95% across the seven-day dosing period in all subjects and at greater than or equal to 97% at 24 hours after the last dose, as shown in the left panel of Figure 6. Hemolysis activity returned to pre-dose levels within two weeks following the last dose. Similarly, inhibition of alternative pathway complement activity as measured by MAC deposition was rapid and sustained at greater than or equal to 90% across the dosing period in all subjects. Complement activity returned to pre-dose levels within two weeks following the last dose.

Figure 6. Mean inhibition of ex vivo hemolysis in plasma samples from healthy volunteers dosed with 0.2 mg/kg RA101495 (n = 4) or placebo (n = 2) by daily SC administration for seven days

GRAPHIC

        Complement activity was assessed by detecting destruction of antibody-sensitized sRBC by classical complement activity in 1% plasma samples from subjects, as shown in Figure 6.

    Safety and Tolerability

        We observed that repeat dosing of RA101495 was well-tolerated in healthy volunteers. ISE was observed in three of six subjects. All three subjects were in the RA101495 dose group, and ISE was observed after one out of seven injections in two subjects, and after four out of seven injections in a third subject). All ISEs were mild (grade 1) with no pain, induration, tenderness or swelling and all resolved spontaneously within 23 hours post-dosing. No clinically significant changes were observed in vital signs, physical examination, or clinical laboratory parameters, including hematology, blood chemistry, coagulation, urinalysis, and ECGs.

Planned Phase 2 Clinical Trial(s)

        The global Phase 2 program is designed to evaluate the safety, tolerability, efficacy, pharmacokinetics, and pharmacodynamics of RA101495 in patients with PNH. We expect that the program will consist of two open-label Phase 2 trials, one conducted in the United States, and one conducted outside the United States. We expect that these trials will enroll three distinct populations of PNH patients based on their treatment history as follows.

    eculizumab naïve patients, meaning patients who have never received eculizumab (Ex-US Protocol).

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    eculizumab switch patients, meaning patients who are currently treated with eculizumab (Ex-US Protocol).

    eculizumab inadequate responders, meaning patients who are currently treated with eculizumab but have inadequate response.

        Based on feedback we received from the FDA to date, we anticipate enrolling eight to 12 eculizumab naive patients, six to eight eculizumab switch patients, and six to eight eculizumab inadequate responders. Each patient will be dosed with a 0.3mg/kg loading dose of RA101495 followed by 0.1 mg/kg daily thereafter. After two weeks of treatment, and based on review of safety and efficacy data, patients will continue with 0.1 mg/kg daily or be up-titrated to 0.3 mg/kg daily if needed to achieve adequate control of hemolysis. Patients will be eligible for long-term extension following the completion of the initial 12 weeks. The primary efficacy endpoint will be change in lactate dehydrogenase from baseline to the mean of six through 12 weeks.

        The design of the Phase 2 trials has not been finalized, and is currently under discussion with FDA, and pending review by other regulatory agencies.

Preclinical Studies

        We have completed numerous preclinical studies with RA101495 in laboratory animals and in vitro experiments. RA101495 is designed to be a potent inhibitor of primate complement and a poor inhibitor in most other species, therefore in vivo evaluation of PK and PD was conducted in cynomolgus monkeys. Data shown in Figure 7 demonstrate the strong correlation between plasma levels of drug and inhibition of complement activity in cynomolgus monkeys. These data show that plasma concentrations greater than or equal to 2.5 µg/ml are sufficient to inhibit greater than 90% of complement activity in cynomolgus monkey.

        Data in Figure 8 are representative of multiple studies conducted in cynomolgus monkeys, and show plasma levels of RA101495 and complement activity as measured by hemolysis of sRBCs following seven daily SC doses of 0.21 mg/kg and for 11 days following the last dose.

Figure 7. Correlation between plasma levels of RA101495 and inhibition of complement activity as measured by hemolysis of antibody sensitized sheep red blood cells.   Figure 8. Plasma concentrations of RA101495 and suppression of hemolysis following daily SC administration of 0.21 mg/kg for 7 days and for 11 days following the last dose.

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        We have evaluated the effects of RA101495 in a combination of efficacy and standard in vitro and in vivo toxicology assays to identify what we believe to be the appropriate first-in-human dose and dose-limiting toxicity for RA101495.

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RA101495 for Refractory Generalized Myasthenia Gravis

Background

        Myasthenia gravis, or MG, is a rare complement-mediated autoimmune disease characterized by the production of autoantibodies targeting proteins that are critical for the normal transmission of electrical signals from nerves to muscles. Although the prognosis of MG is generally benign, in 10% to 15% of patients disease control either cannot be achieved with current therapies, or results in severe side effects of immunosuppressive therapy. This severe form of MG is known as rMG, and affects approximately 9,000 individuals in the United States

        Patients present with muscle weakness that characteristically becomes more severe with repeated use, and recovers with rest. Muscle weakness can be localized to specific muscles, such as those responsible for eye movements, but often progresses to more diffuse muscle weakness. rMG may even become life-threatening when muscle weakness involves the diaphragm and the other chest wall muscles responsible for breathing. This is the most feared complication of rMG, known as myasthenic crisis, and requires hospitalization, intubation, and mechanical ventilation. Approximately 15% to 20% of patients experience a myasthenic crisis within two years of diagnosis.

        The most common target of autoantibodies in rMG is the acetylcholine receptor, or AchR, located at the neuromuscular junction, the point at which a motor neuron transmits signals to a skeletal muscle fiber. Binding of anti-AchR autoantibodies to the muscle endplate results in activation of the classical complement cascade; deposition of MAC on the post-synaptic muscle fiber leads to local damage to the muscle membrane, and reduced responsiveness of the muscle to stimulation by the neuron.

        Inhibition of terminal complement activity at the level of C5 or C6 has been demonstrated to prevent development of disease pathology in experimental animal models of rMG. Additionally, inhibition of C5 by eculizumab has been shown to improve clinical symptoms in patients with rMG. A recently-completed Phase 3 trial of eculizumab for patients with rMG showed a positive trend towards improvement in quality of life measures, although the primary endpoint did not reach statistical significance.

Current Therapies and Their Limitations

        Current therapies focus on either boosting the AchR signal or suppressing the immune response, and none of these treatments targets the injury to the post-synaptic muscle endplate caused by complement attack. First-line therapy for mild symptomatic rMG is with inhibitors of acetylcholinesterase, the enzyme that breaks down the neurotransmitter acetylcholine, such as pyridostigmine bromide, marketed as Mestinon by Valeant Pharmaceuticals. If remission is not achieved with acetylcholinesterase inhibitors, a course of systemic immunosuppressive therapy may be initiated. These agents have inconsistent evidence of efficacy, and all have long-term toxicities. They include corticosteroids, azathioprine, mycophenylate mofetil, and rituximab. Surgical removal of the thymus is sometimes performed in patients with moderate to severe rMG to try to switch off the production of autoantibodies. Intravenous immunoglobulin and plasma exchange may be needed in patients with myasthenic crisis.

Potential Benefits of Our Approach

        We believe that inhibiting terminal complement activity with our C5 inhibitor RA101495 may block complement-mediated damage to the motor endplate thereby preserving responsiveness to signaling and potentially preventing muscle weakness.

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Clinical Development Plan

        We plan to leverage our work in PNH to efficiently advance clinical development of RA101495 for rMG and intend to initiate a Phase 2 clinical trial of RA101495 in patients with rMG in the second half of 2017.

RA101495 for Lupus Nephritis

Background

        Systemic lupus erythematosus, or SLE, is a serious, potentially lethal autoimmune disorder characterized by multi-organ involvement and a chronic relapsing clinical course. LN refers to the specific involvement of the kidney that is seen in approximately 20% of SLE patients. It is estimated that approximately 63,000 individuals in the United States have LN. Although LN is a chronic disease, its course is characterized by intermittent periods of acute kidney inflammation and high disease activity, which are known as nephritic flares. The cumulative impact of these flares over time can cause irreversible damage to the kidneys. Although immunosuppressive therapy has improved prognosis for patients with LN, approximately 10% to 15% of these patients will develop end-stage renal disease, requiring a kidney transplant or initiation of dialysis. As such, LN is associated with an approximately six-fold increase in the rate of mortality compared with the general population.

        The pathophysiology of LN involves the inappropriate production of autoantibodies which recognize self or "host" antigens, such as double-stranded DNA. The deposition of autoantibody-antigen complexes in the kidney activates the classical pathway of complement, resulting in generation of C5a, deposition of MAC, and subsequent tissue injury. Levels of the circulating complement components C3 and C4 are depleted in patients during LN flares, due to accelerated consumption of classical complement pathway proteins. Deposition of MAC has been observed in kidney biopsy samples from patients with LN. In a recent case report, MAC deposition, as measured by the presence of C9 in kidney tissue, was significantly reduced following treatment with eculizumab, and was accompanied by corresponding improvement in kidney function and clinical status. There have been several other case reports of improved kidney function in LN patients treated with eculizumab, suggesting that inhibition of C5 may be disease modifying. Additionally, inhibition of C5a activity has been shown to improve renal function and histopathological features associated with LN in animal models of the disease.

Current Treatments and Limitations

        Treatment of LN flares varies according to disease severity and the type of lesions seen on kidney biopsy. Generally, inhibitors of angiotensin converting enzyme are used to reduce proteinuria and hypertension, while corticosteroids, cyclophosphamide, mycophenolate mofetil, or azathioprine are used to suppress the immune system. These immunosuppressive treatments have significant toxicities associated with long-term use, and do not address complement-mediated tissue injury.

Potential Benefits of Our Approach

        We believe that RA101495, by binding C5 and inhibiting generation of both C5a and MAC, may prevent progression of kidney disease in LN by blocking complement-mediated damage to kidney cells. By inhibiting renal injury, we believe that RA101495 may reduce dependence on steroids and other immunosuppresive agents, thereby potentially improving the long-term outcome for patients.

Clinical Development Plan

        We plan to leverage our work in PNH to efficiently advance clinical development of RA101495 for LN and intend to initiate a Phase 1b clinical trial of RA101495 in LN in the second half of 2017.

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Our Discovery Programs

Dry Age-Related Macular Degeneration/Geographic Atrophy

        AMD is the most common cause of blindness in older adults, and has an estimated worldwide prevalence of 8.7% among all individuals aged 45 to 85. AMD is subdivided into two forms based on the underlying pathophysiologic process. These are known as dry AMD and wet AMD. Dry AMD comprises 90% of all AMD cases, and is characterized by deterioration of the retina associated with the appearance of small deposits of debris, called drusen, under the macula. The remaining 10% of AMD cases are wet AMD , which is caused by abnormal growth of blood vessels in the retina. Whereas visual loss in patients with wet AMD occurs rapidly, within months to a year, dry AMD progresses much more slowly, over the course of decades. In dry AMD, patients experience progressive blurriness and blank spots in the center of their field of vision. It is estimated that approximately 1,000,000 individuals in the United States have GA.

        The alternative pathway of the complement system is implicated in dry AMD by the presence of almost all alternative pathway complement components in drusen deposits. Moreover, specific variations in the genes encoding the alternative pathway complement regulatory proteins Factor H or Factor I, resulting in increased complement activity, are associated with increased risk of developing dry AMD. Variations in the genes encoding the alternative cascade proteins Factor B and C3 are also associated with risk for dry AMD.

        Although several therapeutics targeting vascular endothelial growth factor, or VEGF, to block growth of abnormal blood vessels are approved to treat wet AMD, such as Avastin, Lucentis and Eylea, there are no approved therapies for dry AMD or GA. Lampalizumab, an antibody to complement Factor D being developed by Roche, has demonstrated clinical activity for dry AMD. In Phase 2 clinical trials, lampalizumab reduced progression of GA in patients with a specific gene variant in complement Factor I.

        We are developing inhibitors of complement Factor D for intravitreal administration, designed to prevent or reduce progression of GA in patients with dry AMD, thereby potentially preventing further vision loss and preserving sight.

C3 Glomerulonephritis/Dense Deposit Disease

        C3GN and DDD are closely-related but distinct alternative pathway complement-mediated diseases characterized by C3 deposition in the kidney, with absent or minimal immunoglobulin deposition. The two diseases can be distinguished from each other by electron microscopy, based on the precise location and pattern of C3 deposits within the kidney. The combined prevalence of C3GN and DDD is 1-3 per million individuals, with an estimate of approximately 1,000 patients in the United States. The clinical features of C3GN and DDD include compromised renal function and high blood pressure. The pathophysiology of C3GN and DDD involves both genetic factors and acquired triggers. Patients typically present in adolescence or early adulthood, following an infectious episode which, in susceptible individuals results in uncontrolled activation of C3. Susceptibility to C3GN and DDD may be inherited on the basis of mutations in proteins that regulate the alternative pathway of complement activation.

        There are no approved therapies for C3GN or DDD. Patients are usually treated with angiotensin converting enzyme inhibitors and angiotensin II receptor blockers to modulate proteinuria, and with nonspecific immunosuppressants, including corticosteroids, when kidney inflammation is present.

        We are developing specific inhibitors of Factor D, a critical component of the alternative pathway of complement, as targeted drug candidates for C3GN. By blocking the alternative pathway upstream of C3, we believe that this mechanism may prevent C3 deposition and subsequent renal injury.

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Oral C5 Inhibitor

        We are actively pursuing the identification of orally-bioavailable inhibitors of C5 that bind to and inhibit targets in similar ways as our peptides, providing an additional option for the treatment of PNH, rMG, LN and additional diseases, including multiple orphan indications. For example, our lead C5 inhibitor binds to a previously unrecognized site for inhibiting cleavage and activation of C5. With a long-term aim of developing a traditional small molecule inhibitor of C5 that can be delivered in pill form, we have developed an assay for high throughput screening of small molecule libraries for compounds that bind to the site defined by RA101495 and related peptides. This screening campaign has led to the identification of small molecules that bind to C5 at this site, inhibit cleavage, and inhibit red blood cell lysis in an in vitro assay. Small molecules and peptides that bind to other sites on C5 have yielded information on new mechanisms for C5 inhibition that are expected to contribute to a pipeline of highly differentiated, orally-available products.

Complement Component 1s (C1s)

        We are also engaged in discovery efforts to identify inhibitors of C1s with potential applications in a range of autoimmune and CNS diseases. C1s is involved in the classical complement pathway. A complex comprised of C1s, along with complement components 1q and 1r (C1r and C1q) bind to antigen-antibody complexes, and the serine protease domain of C1s cleaves C4 to generate C4b as an initial step in forming the classical pathway C5 convertase, C4bC2bC3b, where C4b, C2b, and C3b are domains of complement components 4, 2, and 3, respectively. In cases of inappropriate production of self-reactive antibodies in autoimmune disease, or production of anti-tissue antibodies in organ transplantation setting, C1s activity can lead to pathologic C5 activation, producing C5b9 (MAC) and the inflammatory mediator C5a.

        Thus, inappropriate C1s and classical complement convertase activity is linked to a variety of immune complex-mediated indications, including cold agglutinin disease, warm autoimmune hemolytic anemia, systemic lupus erythematosus, antibody-mediated rejection (such as with kidney transplant), Guillain-Barre Syndrome, neuromyelitis optica, rMG, multiple sclerosis, bullous pemphigoid (a rare and debilitating skin disease), and other diseases. Furthermore, inappropriate activity of the C1q-C1r-C1s complex and C4 levels has been implicated in a variety of neurologic conditions, including Alzheimer's disease, Huntington's disease, spinal muscular atrophy, frontal temporal dementia, glaucoma, and schizophrenia. We estimate that the incidence rates of these indications include approximately one in 80,000 people for cold aggluthin disease, approximately one in 100,000 people for warm autoimmune hemolytic anemia, and an aggregate of approximately 5.4 million total patients in the United States with Alzheimer's disease. Other neurodegenerative diseases include Huntington's disease, amyotrophic lateral sclerosis and Guillain-Barre syndrome.

        We have used our platform technology to generate cyclic peptides that bind C1s and inhibit the protease activity of C1s, C4b production, and red blood cell lysis in an in vitro assay. We expect C1s inhibitors to have broad utility in a number of disease areas, and we anticipate entering clinical trials for a rare autoimmune indication in the                                    .

        In addition to the programs described above, we also have discovery and preclinial programs targeting selective inhibition of various complement factors for other indications. For example, we are also a developing a Factor D inhibitor program designed to reduce C3 fragment coating on PNH red blood cells and subsequent spleen phagocytosis. However, as this treatment method may increase the risk of infection, this program will require additional development.

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Our Extreme Diversity Platform

        Known as our Extreme Diversity platform, our proprietary macrocyclic peptide chemistry technology allows us to produce synthetic macrocyclic peptides that combine the diversity and specificity of antibodies with the pharmacological properties of small molecules.

        We utilize a process called "mRNA display" to produce extremely large and diverse libraries of peptides from which to screen for potential product candidates. Figure 9 illustrates the step-by-step process of mRNA display.

    Step 1, creation of peptide-mRNA fusion libraries.   mRNA is translated into peptides by ribosomes using both naturally occurring amino acids and non-natural amino acids. The antibiotic puromycin is linked to each mRNA to create peptide-mRNA fusions. As a result, the translation of a relatively small amount of mRNA results in a large and diverse library of up to 100 trillion peptide-mRNA fusions.

    Step 2, creating rigid macrocycle peptides.   The peptide-mRNA display libraries are then modified chemically to link two specific amino acids together and cyclize the peptide into rigid macrocycle peptides. In addition, the mRNA components of the fusions are converted to cDNA (a hybrid of mRNA and DNA) at this step.

    Step 3, selecting target peptides.   Once a cyclic peptide mRNA display library is prepared we select peptides that bind to the desired target protein immobilized on the surface of a small, solid bead.

    Step 4, DNA amplification.   After an initial set of peptides that bind to the target protein are selected, we leverage the mRNA to then amplify the peptides' corresponding DNA via a DNA amplifying technique called Polymerase Chain Reaction, or PCR.

    Steps 5, 6 and 7, repeat process to select lead candidate.   The cycle can be repeated to enrich for candidate peptides ( Step 5 ), and the DNA's sequence is ultimately determined and desired peptide candidates are synthesized based on the information in its corresponding DNA ( Step 6 ), and candidate peptides are then further screened and optimized for desired target binding affinity to select a lead candidate ( Step 7 ).

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Figure 9. A diagram illustrating our Extreme Diversity platform.

GRAPHIC

        RA101495 and our pipeline of peptide product candidates were discovered using our Extreme Diversity platform, our proprietary technology that allows us to rapidly and efficiently discover cyclic peptides comprised of natural and non-natural amino acids, with the advantages set forth below.

    High affinity and potency.   Our peptides are cyclic, and therefore are conformationally rigid, thereby "locking" the molecule in the conformation in which it binds optimally to its target and leading to affinity and potency similar to antibodies.

    High specificity.   Our peptides are larger than most drugs taken in pill form, allowing them to have more contact points when bound to their targets, thus affording similar specificity as antibodies.

    Novel mechanisms of interaction.   The use of non-natural amino acids with new chemical functionalities expands the manner in which peptides can interact with target proteins, potentially enabling new mechanisms to modulate protein function in the body.

    High stability.   The backbone modification and relatively rigid, cyclic structure of our peptides are designed to reduce degradation. As a result, we believe our peptides will have higher stability in the body than natural peptides. Further, they will not denature or unfold over time, and have higher stability than antibodies and biologics, potentially allowing for room temperature storage over the entire distribution chain.

    Improved bioavailability.   The relatively small size of our peptides allows them to enter the circulation readily when administered by a variety of potential routes, including subcutaneous injection or oral administration, an advantage over many monoclonal antibody and biologic therapies which require intravenous infusion.

    Half-life modification.   As synthetic products, we can readily modify our cyclic peptides with chemical groups that modify the circulating half-life in the body, including lipids, carbohydrates, and polymers such as polyethylene glycol, providing the potential to optimize dosing by fine-tuning the pharmacokinetic properties and improve patient outcomes.

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    Reduced safety risks.   Unlike antibodies and biologics, our peptides are completely synthetic, eliminating the potential for viral and cellular protein contamination, risks to therapeutics produced in mammalian cells, and potentially allowing for administration to patients with hypersensitivity to products produced using mammalian cells.

    Favorable manufacturing processes and costs.   As synthetic products, our peptides do not need complex fermentation facilities, allowing their production to be easily sourced from multiple vendors at lower costs than mammalian cell products.

        We are driving the development of the next generation of orally available drugs. Certain of our cyclic peptides are being developed into orally available drugs, as exemplified by our high value target developed in our collaboration with Merck. We can also use our platform to develop novel macrocycle peptides to guide the development of orally-available, traditional small molecule drugs such as our oral C5 inhibitors.

        We protect our intellectual property rights related to the Extreme Diversity program through a combination of licensed patents, trade secrets and know-how. For more information, see the section "—Intellectual Property."

Our Merck Collaboration and License Agreement

        In April 2013, we entered into a multi-target collaboration and license agreement with Merck to use our proprietary drug discovery technology platform to identify orally available cyclic peptides for non-complement program targets nominated by Merck and provide specific research and development services. Under the agreement, we granted Merck licenses under certain of our intellectual property rights to manufacture, develop and commercialize compounds and products directed to selected program targets. The agreement consists of a research phase, where we and Merck collaborated on identifying and pre-clinically developing orally available cyclic peptides suitable for further development by Merck, and a development and commercialization phase pursuant to which Merck has sole discretion and responsibility, including financial responsibility, for further development and commercialization of these peptides, on a program-by-program basis, from the collaboration. In April 2015, the agreement was amended to extend the research term of the collaboration to April 2016.

        At the signing of the agreement, Merck made an upfront non-refundable, technology license fee of $4.5 million to us. In addition, during the research term, which ended in April 2016, the agreement provided for reimbursement of research and development services provided by us in accordance with pre-specified limits for the number of our full-time equivalent employees ("FTEs") working under the agreement. At the conclusion of the research term, Merck elected to continue the development of a non-complement cardiovascular target with a large market opportunity, for which we had received $3.5 million in preclinical milestone payments as of June 30, 2016.

        We are entitled to receive future aggregate milestone payments of up to $61.5 million for the non-complement cardiovascular target selected, consisting of remaining preclinical and clinical milestones of $16.5 million, regulatory milestones of $19.0 million and commercial milestones of $26.0 million, and low-to-mid single digit percentage royalties on future sales, if any. Royalties will be payable from the first commercial sale in a country until the later of the last to expire valid claim in such country and a specified number of years from the date of such first commercial sale. The agreement expires on a country-by-country basis upon expiration of Merck's royalty obligations. Merck may terminate the agreement in its entirety upon prior written notice to us. Either party may terminate the agreement in the event of bankruptcy of the other party or uncured material breach. We may terminate the agreement if Merck challenges any of our patent rights covered by the agreement.

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Intellectual Property

Overview

        We strive to protect and enhance the proprietary technology, inventions, and improvements that are commercially important to the development of our business, including our Extreme Diversity platform. This includes seeking, maintaining, and defending patent rights, whether developed internally or licensed from third parties. We also rely on trade secrets and know-how that may be important for the development of our business. This includes aspects of our proprietary technology platform; our continuing technological innovation; and on in-licensing opportunities used to develop, maintain, and strengthen our position in the field of peptide, peptidomimetic, and small molecule-based therapeutics. We additionally may rely on regulatory protection afforded through data exclusivity, market exclusivity and patent term extensions where available.

        Our commercial success may depend in part on our ability to obtain and maintain patent and other proprietary protection for our product candidates, technology and know-how, defend and enforce our patents; prevent others from infringing our proprietary rights, preserve the confidentiality of our trade secrets, and to operate without infringing the proprietary rights of others.

        Our ability to stop third parties from making, having made, using, selling, offering to sell or importing our products may depend on the extent to which we have rights under valid and enforceable licenses, patents or trade secrets that cover these activities. In some cases, these rights may need to be enforced by third party licensors. With respect to both licensed and company-owned intellectual property, we cannot be sure that patents will be granted with respect to any of our pending patent applications or with respect to any patent applications filed by us in the future, nor can we be sure that any of our existing patents or any patents that may be granted to us in the future will be commercially useful in protecting our commercial products and methods of manufacturing the same. For more information, please see "Risk Factors—Risks Related to Our Intellectual Property."

        We seek to protect our proprietary position in a variety of ways, including by pursuing patent protection in certain jurisdictions where it is available. For example, we file U.S. and certain foreign patent applications related to our proprietary technology, inventions and improvements that are important to the development of our business. We also intend to seek patent protection or rely upon trade secret rights to protect other technologies that may be used to discover and validate targets and that may be used to identify and develop novel products. We seek protection, in part, through confidentiality and proprietary information agreements. We are a party to various other license agreements that give us rights to use specific technologies in our research and development.

        The term of individual patents depends upon the legal term of the patents in the countries in which they are obtained. In most countries in which we file, the patent term is 20 years from the earliest date of filing a non-provisional patent application related to the patent. A U.S. patent also may be accorded a patent term adjustment, or PTA, under certain circumstances to compensate for delays in obtaining the patent caused by the United States Patent and Trademark Office. In some instances, such a PTA may result in a U.S. patent term extending beyond 20 years from the earliest date of filing a non-provisional patent application related to the U.S. patent. In addition, in the United States, the term of a U.S. patent that covers an FDA-approved drug may also be eligible for patent term extension, which permits patent term restoration as compensation for the patent term lost during the FDA regulatory review process. The Hatch-Waxman Act permits a patent term extension of up to five years beyond the expiration of the patent. The length of the patent term extension is related to the length of time the drug is under regulatory review. Patent term extension cannot extend the remaining term of a patent beyond a total of 14 years from the date of product approval and only one patent applicable to an approved drug may be extended. Similar provisions are available in Europe and other foreign jurisdictions to extend the term of a patent that covers an approved drug. In the future, if and when our products receive FDA approval, we expect to apply for patent term extensions on patents

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covering those products. We plan to seek patent term extensions to any of our issued patents in any jurisdiction where these are available, however there is no guarantee that the applicable authorities, including the FDA in the United States, will agree with our assessment of whether such extensions should be granted, and if granted, the length of such extensions.

Company-Owned Intellectual Property

        Our C5 inhibitor portfolio includes three families of United States patent applications directed to C5 inhibitors and related methods of use. Any patents that may grant from these patent applications are generally expected to expire between 2035 and 2036, subject to possible patent term extensions.

        We also own one United States patent and various patent applications directed to other technologies. The United States patent is expected to expire in 2034, and any patents granted on the pending applications are expected to expire between 2034 and 2037, subject to possible patent term extensions.

Licensed Intellectual Property

        We have exclusively licensed one patent family directed to an in vitro translation system for incorporating unnatural amino acids from Dr. A. C. Forster. This family, which covers certain rights related to our Extreme Diversity platform, includes five granted patents, including one in the United States and four in foreign jurisdictions including Australia, Canada, Europe and Japan. Patents in this family are generally expected to expire in 2022, subject to possible patent term extensions. This license may be terminated if we fail to make payments thereunder, if we commit a material breach of our obligations thereunder, or if we make an assignment for benefit of creditors or have a petition in bankruptcy filed; also, we may terminate the license for any reason upon 30 days' prior written notice. As of the date of this prospectus, we have paid an aggregate amount of approximately $250,000 under this license. In connection with the execution of this license, we paid an issue fee of approximately $175,000, and annual maintenance fees are approximately $15,000. In addition, we issued equity in the amount of approximately 60,000 shares of common stock in connection with this license. The license provides for running royalties equal to 0.25% of net sales of licensed products thereunder, payable on a country-by-country and licensed product-by-licensed product basis until the expiration of the last valid claim covering such product in such country.

        We also have a fully paid-up, non-exclusive license to more than 20 United States and more than 50 foreign granted patents directed to various display library technologies as a result of our acquisition of Cosmix, which covers other rights related to our Extreme Diversity platform. These include patents that have been granted in the United States, Canada, China, Europe, India, Israel, Japan, Korea, New Zealand, Russia, South Africa, and Taiwan. These patents are generally expected to expire between 2018 and 2022, subject to possible patent term extensions. We paid an aggregate amount of approximately $1.4 million and approximately 860,000 shares of common stock in connection with the Cosmix acquisition that includes this fully paid-up license, though no breakdown of amounts specifically attributable to this license is available.

Trademark Protection

        As of August 1, 2016, our trademark applications for RA PHARMACEUTICALS and RA PHARMA have been allowed and our trademark application for the GRAPHIC mark is pending in the United States. We have nine pending trademark applications for the same three marks in foreign jurisdictions, including Europe, Australia and Canada.

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Trade Secret Protection

        Finally, we may rely, in some circumstances, on trade secrets to protect our technology. In particular, with the underlying patents expiring by 2022, we anticipate relying on trade secrets to protect the know-how behind our proprietary peptide chemistry platform. However, trade secrets can be difficult to protect. We seek to protect our proprietary technology and processes, in part, by entering into confidentiality agreements with our employees, consultants, scientific advisors and contractors. We also seek to preserve the integrity and confidentiality of our data and trade secrets by maintaining physical security of our premises and physical and electronic security of our information technology systems. While we have confidence in these individuals, organizations and systems, agreements or security measures may be breached, and we may not have adequate remedies for any breach. In addition, our trade secrets may otherwise become known or be independently discovered by competitors. To the extent that our consultants, contractors or collaborators use intellectual property owned by others in their work for us, disputes may arise as to the rights in related or resulting know-how and inventions. For further information, please see "Risk Factors—Risks Related to Our Intellectual Property."

Competition

        The biotechnology and pharmaceutical industries are characterized by rapidly advancing technologies, intense competition and a strong emphasis on proprietary products. While we believe that our technologies, knowledge, experience and scientific resources provide us with competitive advantages, we face potential competition from many different sources, including major pharmaceutical, specialty pharmaceutical and biotechnology companies, academic institutions and governmental agencies and public and private research institutions. Any product candidates that we successfully develop and commercialize will compete with existing therapies and new therapies that may become available in the future.

        There are a number of currently marketed products and product candidates in preclinical research and clinical development by third parties to treat the various diseases that we are targeting. In general, these products and product candidates can be categorized based on their proposed mechanisms of action. The mechanisms of action for these product candidates include inflammation suppression by agents such as complement inhibitors and corticosteroids, as well as immune modulators, visual cycle modulators, anti-amyloid agents, antioxidants, neuroprotectants, cell and gene therapies and vascular and interstitial tissue remodeling agents.

        If our lead product candidates are approved for the indications for which we are currently undertaking clinical trials, they will compete with the products and product candidates discussed below.

        PNH.     The principal competitor for our program in PNH is eculizumab, a C5 inhibitor, which is marketed as Soliris by Alexion Pharmaceuticals and is the only drug approved for the treatment of PNH. Alexion Pharmaceuticals is also developing a next-generation C5 inhibitor named ALXN 1210 that has a less frequent intravenous dosing schedule of at least monthly. In addition, we are aware that there are a number of other companies that are actively developing product candidates for the treatment of PNH, including the following:

    product candidates directed at C5 inhibition being developed by Alnylam that is in early clinical trials, Coversin, a small protein inhibitor of C5 being developed by Akari Pharmaceuticals that is in early clinical trials, LFG316, a monoclonal antibody inhibitor of C5 being developed by Novartis Pharma;

    a product candidate directed at C3 inhibition that is currently in preclinical development by Amyndas Pharmaceuticals;

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    a product candidate directed at C3 inhibition that is currently in clinical development by Apellis Pharmaceuticals; and

    other product candidates directed at other mechanisms of complement inhibition such as an antibody against C1s, being developed by True North Therapeutics in early clinical trials, and an orally available small molecule inhibitor of complement Factor D, that is currently in preclinical development by Achillion Pharmaceuticals.

        Certain of our competitors are developing product candidates intended to be administered SC, IV or orally, with dosing frequencies ranging from twice daily to monthly, and with varying dose strengths and half-lives. We believe that the combination of SC administration, dose frequency and dose strength will allow RA101495 to provide improved control of hemolysis and suppression of breakthrough hemolysis.

        LN.     There are no specific therapies for LN. Although approved for patients with active, autoantibody-positive, systemic lupus erythematosus who are receiving standard therapy, belimumab, which is marketed under the name Benlysta by GlaxoSmithKline, has not been evaluated in patients with LN. There are numerous phase 2 and later stage clinical studies on non-specific immunosuppressive agents, including agents currently used as standard of care in LN, with tacrolimus, mycophenolate, bortezomib, cyclophosphamide, azothioprim, laquinimod, and ACTHAR Gel being tested. In addition, a number of agents are being tested as targeted monoclonal antibody therapies, such as anti-CD40, anti-IL6, rituximab (anti-CD20), anti-TWEAK (an antibody directed against the TNF-like weak inducer of apoptosis), and belimumab (anti BLys), as well as B7 antagonists such as CTLA4-Ig. The only complement pathway inhibitors proposed as targeted, disease-modifying agents in LN are OMS721, which is in Phase 2 development by Omeros, an anti-MASP-2 antibody that inhibits the mannose-binding lectin arm of the complement system, and eculizumab, where the antibody has shown benefit in a small number of published case report studies. There are no ongoing studies of eculizumab or any other C5 inhibitor in LN.

        rMG.     rMG is currently treated with cholinesterase inhibitors and non-specific immunosuppressive agents, including azathioprine, cyclophosphamide, cyclosporine, IV IG, mycophenolate, prednisone, and tacrolimus. Approximately 20% of patients are refractory to these therapies. Alexion Pharmaceuticals has recently presented Phase 3 data with eculizumab in rMG patients. While both Phase 2 and Phase 3 data were highly supportive of a treatment effect with eculizumab, the Phase 3 data narrowly missed the primary efficacy endpoint. Nonetheless, the data show promise for C5 inhibitor therapy in rMG. Both rituximab, marketed by Roche, and belimumab, marketed by GlaxoSmithKline, which target B cell activity, are in clinical development for rMG. Anti-CD40, being developed as CFZ533 by Novartis, bortezomib, and a small molecule activator of the muscle protein troponin being developed as Cytokinetics by Tirasemtiv, are being tested in clinical trials in rMG. A therapeutic vaccine targeting B-and T-cell receptors (CV-MG-01) is in early clinical testing for rMG.

        AMD.     There are currently no approved treatments for dry AMD or GA. We are aware that there are a number of companies that are actively developing product candidates for the treatment of GA, including the following product candidates that are in clinical development: lampalizumab, a Factor D complement inhibitor for the treatment of GA being developed by Roche that is in Phase 3 clinical trials; LFG316, an anti-C5 monoclonal antibody being developed by Novartis Pharma that is in Phase 2 clinical trials; Zimura, a C5 inhibitor being developed by Ophthotech Corporation that is entering Phase 2/3 clinical trials; and other product candidates that do not target the complement system that are in Phase 2 or Phase 3 clinical trials, including compounds being developed by Acucela, Allergan, GlaxoSmithKline and Novartis Pharma. There are no currently available treatments for intermediate AMD.

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        C1s.     Many of our competitors are developing product candidates targeting C1s or indications that we may target with our C1s program. These include Soliris by Alexion Pharmaceuticals, which completed a Phase 2 trial targeting cold agglutinin disease; TNT-009, a C1s inhibitor being developed by True North Therapeutics that is in Phase 1 trials for cold aggluthinin disease and warm autoimmune hemolytic anemia; Fostamatinib, an oral Syk inhibitor being developed by Rigel Pharmaceuticals that is in Phase 2 trials for warm autoimmune hemolytic anemia; rituximab, a monoclonal antibody marketed under the name Rituxan by Roche that is currently in Phase 3 trials for warm autoimmune hemolytic anemia; and a C1s inhibitor being developed by Annexon that is in a preclinical phase.

Sales and Marketing

        We hold worldwide commercialization rights to all of our complement-mediated product candidates. Subject to receiving marketing approval, we intend to independently pursue the commercialization of RA101495 in PNH patients in the United States and Europe by building a focused sales and marketing organization in these geographies. We believe that such an organization will be able to address the community of physicians who are key specialists in treating the patient populations for which our product candidates are being developed.

        We also plan to build a marketing and sales management organization to create and implement marketing strategies for any products that we market through our own sales organization and to oversee and support our sales force. The responsibilities of the marketing organization would include developing educational initiatives with respect to approved products and establishing relationships with researchers and practitioners in relevant fields of medicine.

        Outside of the United States and Europe, we may pursue the approval and commercialization of RA101495 for PNH patients either independently or in collaboration with others. We intend to develop and commercialize RA101495 for other indications independently or through collaborations with third parties.

Manufacturing

        We do not currently own or operate manufacturing facilities for the production of clinical or commercial quantities of our product candidates. We intend to rely on third-party contract manufacturers to produce our products and have recruited personnel with experience to manage the third-party contract manufacturers producing our product candidates and other product candidates or products that we may develop in the future.

        The process for manufacturing our product candidates consists of a multiple-stage-chemical synthesis, purification using liquid chromatography, and freeze drying into a powder form. The initial chemical synthesis process is similar to other cyclic peptide synthetic processes. For some of our products, the peptide is modified after cyclization using a common synthetic processes to attach bio-distribution modifying chemical moieties. We expect the costs associated with manufacturing drug substance for our product candidates to be comparable to the current manufacturing costs for other complex and similarly sized peptide-based components, and because our product candidates are synthetic, we believe they can be manufactured in a more cost effective manner relative to competitive biologic and monoclonal antibody therapies.

        We currently engage two third-party manufacturers to provide clinical supplies of RA101495, an additional third-party manufacturer to provide non-clinical supplies of RA101495 and a different, single third-party manufacturer to provide fill-finish services for RA101495.

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Government Regulation

        Government authorities in the United States, at the federal, state and local level, and in other countries and jurisdictions, including the European Union, extensively regulate, among other things, the research, development, testing, manufacture, quality control, approval, packaging, storage, recordkeeping, labeling, advertising, promotion, distribution, marketing, post-approval monitoring and reporting, and import and export of pharmaceutical products. The processes for obtaining regulatory approvals in the United States and in foreign countries and jurisdictions, along with subsequent compliance with applicable statutes and regulations and other regulatory authorities, require the expenditure of substantial time and financial resources.

Review and Approval of Drugs in the United States

        In the United States, the FDA regulates drugs and devices under the Federal Food, Drug, and Cosmetic Act, or FDCA, and implementing regulations. Although we have not yet selected the device component to use for administration of our lead product candidate, we expect that, if approved, our lead drug product candidate may be regulated as a combination product, which means that it is composed of both a drug product and device product. If marketed individually, each component would be subject to different regulatory pathways and reviewed by different centers within the FDA. A combination product, however, is assigned to a center that will have primary jurisdiction over its regulation based on a determination of the combination product's primary mode of action, which is the single mode of action that provides the most important therapeutic action. In the case of our lead product candidate, we expect the primary mode of action to be attributable to the drug component of the product, which means that the FDA's Center for Drug Evaluation and Research would have primary jurisdiction over the premarket development, review and approval. The failure to comply with applicable U.S. requirements at any time during the product development process, approval process or after approval may subject an applicant and/or sponsor to a variety of administrative or judicial sanctions, including refusal by the FDA to approve pending applications, withdrawal of an approval, imposition of a clinical hold, issuance of warning letters and other types of letters, product seizures, total or partial suspension of production or distribution, injunctions, fines, refusals of government contracts, restitution, disgorgement of profits, or civil or criminal investigations and penalties brought by the FDA and the Department of Justice or other governmental entities. In addition, an applicant may need to recall a product.

        An applicant seeking approval to market and distribute a new drug product in the United States must typically undertake the following:

    completion of nonclinical, or preclinical, laboratory tests, animal studies and formulation studies in compliance with the FDA's good laboratory practice, or GLP, regulations;

    submission to the FDA of an IND, which must take effect before human clinical trials may begin;

    approval by an independent IRB representing each clinical site before each clinical trial may be initiated;

    performance of adequate and well-controlled human clinical trials in accordance with good clinical practices, or GCP, to establish the safety and efficacy of the proposed drug product for each indication;

    preparation and submission to the FDA of a new drug application, or NDA;

    review of the product by an FDA advisory committee, where appropriate or if applicable;

    satisfactory completion of one or more FDA inspections of the manufacturing facility or facilities at which the product, or components thereof, are produced to assess compliance with current

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      Good Manufacturing Practices, or cGMP, requirements and to assure that the facilities, methods and controls are adequate to preserve the product's identity, strength, quality and purity;

    satisfactory completion of FDA audits of clinical trial sites to assure compliance with GCPs and the integrity of the clinical data;

    payment of user fees and securing FDA approval of the NDA; and

    compliance with any post-approval requirements, including Risk Evaluation and Mitigation Strategies, or REMS, and post-approval studies required by the FDA.

Preclinical Studies

        Preclinical studies include laboratory evaluation of the purity and stability of the manufactured drug substance or active pharmaceutical ingredient and the formulated drug or drug product, as well as in vitro and animal studies to assess the safety and activity of the drug for initial testing in humans and to establish a rationale for therapeutic use. The conduct of preclinical studies is subject to federal regulations and requirements, including GLP regulations. The results of the preclinical tests, together with manufacturing information, analytical data, any available clinical data or literature and plans for clinical trials, among other things, are submitted to the FDA as part of an IND. Some long-term preclinical testing, such as animal tests of reproductive adverse events and carcinogenicity, may continue after the IND is submitted.

Human Clinical Trials in Support of a NDA

        Clinical trials involve the administration of the investigational product to human subjects under the supervision of qualified investigators in accordance with GCP requirements, which include, among other things, the requirement that all research subjects provide their informed consent in writing before their participation in any clinical trial. Clinical trials are conducted under written study protocols detailing, among other things, the inclusion and exclusion criteria, the objectives of the study, the parameters to be used in monitoring safety and the effectiveness criteria to be evaluated. A protocol for each clinical trial and any subsequent protocol amendments must be submitted to the FDA as part of the IND. An IND automatically becomes effective 30 days after receipt by the FDA, unless before that time the FDA raises concerns or questions related to a proposed clinical trial and places the trial on clinical hold. In such a case, the IND sponsor and the FDA must resolve any outstanding concerns before the clinical trial can begin. The FDA can place an IND on full or partial clinical hold at any point in development, and depending upon the scope of the hold, clinical trial(s) may not restart until resolution of the outstanding concerns to the FDA's satisfaction.

        In addition, an IRB representing each institution participating in the clinical trial must review and approve the plan for any clinical trial before it commences at that institution, and the IRB must conduct a continuing review and reapprove the study at least annually. The IRB must review and approve, among other things, the study protocol and informed consent information to be provided to study subjects. An IRB must operate in compliance with FDA regulations. Information about certain clinical trials must be submitted within specific timeframes to the National Institutes of Health for public dissemination on their ClinicalTrials.gov website.

        Human clinical trials are typically conducted in three sequential phases, which may overlap or be combined:

    Phase 1.   The drug is initially introduced into healthy human subjects or, in certain indications such as cancer, patients with the target disease or condition and tested for safety, dosage tolerance, absorption, metabolism, distribution, excretion and, if possible, to gain an early indication of its effectiveness and to determine optimal dosage.

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    Phase 2.   The drug is administered to a limited patient population to identify possible adverse effects and safety risks, to preliminarily evaluate the efficacy of the product for specific targeted diseases and to determine dosage tolerance and optimal dosage.

    Phase 3.   The drug is administered to an expanded patient population, generally at geographically dispersed clinical trial sites, in well-controlled clinical trials to generate enough data to evaluate the efficacy and safety of the product for approval, to establish the overall risk-benefit profile of the product and to provide adequate information for the labeling of the product.

    Phase 4.   Post-approval studies may be conducted after initial marketing approval. These studies are used to gain additional experience from the treatment of patients in the intended therapeutic indication.

        Progress reports detailing the results of the clinical trials must be submitted at least annually to the FDA and more frequently if serious adverse events occur. In addition, IND safety reports must be submitted to the FDA for any of the following: serious and unexpected suspected adverse reactions; findings from other studies or animal or in vitro testing that suggest a significant risk in humans exposed to the drug; and any clinically important increase in the case of a serious suspected adverse reaction over that listed in the protocol or investigator brochure. Phase 1, Phase 2 and Phase 3 clinical trials may not be completed successfully within any specified period, or at all. Furthermore, the FDA or the sponsor may suspend or terminate a clinical trial at any time on various grounds, including a finding that the research subjects are being exposed to an unacceptable health risk. Similarly, an IRB can suspend or terminate approval of a clinical trial at its institution, or an institution it represents, if the clinical trial is not being conducted in accordance with the IRB's requirements or if the drug has been associated with unexpected serious harm to patients. The FDA will typically inspect one or more clinical sites to assure compliance with GCP and the integrity of the clinical data submitted.

        Concurrent with clinical trials, companies often complete additional animal studies and must also develop additional information about the chemistry and physical characteristics of the drug as well as finalize a process for manufacturing the product in commercial quantities in accordance with cGMP requirements. The manufacturing process must be capable of consistently producing quality batches of the drug candidate and, among other things, the applicant must develop methods for testing the identity, strength, quality, purity, and potency of the final drug. Additionally, appropriate packaging must be selected and tested and stability studies must be conducted to demonstrate that the drug candidate does not undergo unacceptable deterioration over its shelf life.

Review of a NDA by the FDA

        Assuming successful completion of required clinical testing and other requirements, the results of the preclinical studies and clinical trials, together with detailed information relating to the product's chemistry, manufacture, controls and proposed labeling, among other things, are submitted to the FDA as part of a NDA requesting approval to market the drug product for one or more indications. Under federal law, the submission of most NDAs is additionally subject to an application user fee, currently exceeding $2.0 million, and the sponsor of an approved NDA is also subject to annual product and establishment user fees, currently exceeding $97,000 per product and $512,000 per establishment. These fees are typically increased annually.

        The FDA conducts a preliminary review of a NDA within 60 days of its receipt and informs the sponsor whether the application is sufficiently complete to permit substantive review. The FDA may request additional information rather than accept a NDA for filing. In this event, the application must be resubmitted with the additional information. The resubmitted application is also subject to review before the FDA accepts it for filing. Once the submission is accepted for filing, the FDA begins an in-depth substantive review. The FDA has agreed to specified performance goals in the review process of NDAs. Most such applications are meant to be reviewed within ten months from the date of filing,

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and most applications for "priority review" products are meant to be reviewed within six months of filing. The review process may be extended by the FDA for three additional months to consider new information or clarification provided by the applicant to address an outstanding deficiency identified by the FDA following the original submission.

        Before approving a NDA, the FDA typically will inspect the facility or facilities where the product is or will be manufactured. These pre-approval inspections may cover all facilities associated with a NDA submission, including drug component manufacturing (such as active pharmaceutical ingredients), finished drug product manufacturing, and control testing laboratories. The FDA will not approve an application unless it determines that the manufacturing processes and facilities are in compliance with cGMP requirements and adequate to assure consistent production of the product within required specifications. Additionally, before approving a NDA, the FDA will typically inspect one or more clinical sites to assure compliance with GCP.

        In addition, as a condition of approval, the FDA may require an applicant to develop a REMS. REMS use risk minimization strategies beyond the professional labeling to ensure that the benefits of the product outweigh the potential risks. To determine whether a REMS is needed, the FDA will consider the size of the population likely to use the product, seriousness of the disease, expected benefit of the product, expected duration of treatment, seriousness of known or potential adverse events, and whether the product is a new molecular entity. REMS can include medication guides, physician communication plans for healthcare professionals, and elements to assure safe use, or ETASU. ETASU may include, but are not limited to, special training or certification for prescribing or dispensing, dispensing only under certain circumstances, special monitoring, and the use of patient registries. The FDA may require a REMS before approval or post-approval if it becomes aware of a serious risk associated with use of the product. The requirement for a REMS can materially affect the potential market and profitability of a product.

        The FDA is required to refer an application for a novel drug to an advisory committee or explain why such referral was not made. Typically, an advisory committee is a panel of independent experts, including clinicians and other scientific experts, that reviews, evaluates and provides a recommendation as to whether the application should be approved and under what conditions. The FDA is not bound by the recommendations of an advisory committee, but it considers such recommendations carefully when making decisions.

Fast Track, Breakthrough Therapy and Priority Review Designations

        The FDA is authorized to designate certain products for expedited review if they are intended to address an unmet medical need in the treatment of a serious or life-threatening disease or condition. These programs are Fast Track designation, Breakthrough Therapy designation and priority review designation.

        Specifically, the FDA may designate a product for Fast Track review if it is intended, whether alone or in combination with one or more other products, for the treatment of a serious or life-threatening disease or condition, and it demonstrates the potential to address unmet medical needs for such a disease or condition. For Fast Track products, sponsors may have greater interactions with the FDA and the FDA may initiate review of sections of a Fast Track product's application before the application is complete. This rolling review may be available if the FDA determines, after preliminary evaluation of clinical data submitted by the sponsor, that a Fast Track product may be effective. The sponsor must also provide, and the FDA must approve, a schedule for the submission of the remaining information and the sponsor must pay applicable user fees. However, the FDA's time period goal for reviewing a Fast Track application does not begin until the last section of the application is submitted. In addition, the Fast Track designation may be withdrawn by the FDA if the FDA believes that the designation is no longer supported by data emerging in the clinical trial process.

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        Second, a product may be designated as a Breakthrough Therapy if it is intended, either alone or in combination with one or more other products, to treat a serious or life-threatening disease or condition and preliminary clinical evidence indicates that the product may demonstrate substantial improvement over existing therapies on one or more clinically significant endpoints, such as substantial treatment effects observed early in clinical development. The FDA may take certain actions with respect to Breakthrough Therapies, including holding meetings with the sponsor throughout the development process; providing timely advice to the sponsor regarding development and approval; involving more senior staff in the review process; assigning a cross-disciplinary project lead for the review team; and taking other steps to design the clinical trials in an efficient manner.

        Third, the FDA may designate a product for priority review if it is a product that treats a serious condition and, if approved, would provide a significant improvement in safety or effectiveness. The FDA determines, on a case-by-case basis, whether the proposed product represents a significant improvement when compared with other available therapies. Significant improvement may be illustrated by evidence of increased effectiveness in the treatment of a condition, elimination or substantial reduction of a treatment-limiting adverse reaction, documented enhancement of patient compliance that is expected to lead to improvement in serious outcomes, and evidence of safety and effectiveness in a new subpopulation. A priority designation is intended to direct overall attention and resources to the evaluation of such applications, and to shorten the FDA's goal for taking action on a marketing application from ten months to six months.

Accelerated Approval Pathway

        The FDA may grant accelerated approval to a product for a serious or life-threatening condition that provides meaningful therapeutic advantage to patients over existing treatments based upon a determination that the product has an effect on a surrogate endpoint that is reasonably likely to predict clinical benefit. The FDA may also grant accelerated approval for such a condition when the product has an effect on an intermediate clinical endpoint that can be measured earlier than an effect on irreversible morbidity or mortality, or IMM, and that is reasonably likely to predict an effect on irreversible morbidity or mortality or other clinical benefit, taking into account the severity, rarity, or prevalence of the condition and the availability or lack of alternative treatments. Products granted accelerated approval must meet the same statutory standards for safety and effectiveness as those granted traditional approval.

        For the purposes of accelerated approval, a surrogate endpoint is a marker, such as a laboratory measurement, radiographic image, physical sign, or other measure that is thought to predict clinical benefit, but is not itself a measure of clinical benefit. Surrogate endpoints can often be measured more easily or more rapidly than clinical endpoints. An intermediate clinical endpoint is a measurement of a therapeutic effect that is considered reasonably likely to predict the clinical benefit of a product, such as an effect on IMM. The FDA has limited experience with accelerated approvals based on intermediate clinical endpoints, but has indicated that such endpoints generally may support accelerated approval where the therapeutic effect measured by the endpoint is not itself a clinical benefit and basis for traditional approval, if there is a basis for concluding that the therapeutic effect is reasonably likely to predict the ultimate clinical benefit of a product.

        The accelerated approval pathway is most often used in settings in which the course of a disease is long and an extended period of time is required to measure the intended clinical benefit of a product, even if the effect on the surrogate or intermediate clinical endpoint occurs rapidly. Thus, accelerated approval has been used extensively in the development and approval of products for treatment of a variety of cancers in which the goal of therapy is generally to improve survival or decrease morbidity and the duration of the typical disease course requires lengthy and sometimes large trials to demonstrate a clinical or survival benefit.

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        The accelerated approval pathway is usually contingent on a sponsor's agreement to conduct, in a diligent manner, additional post-approval confirmatory studies to verify and describe the product's clinical benefit. As a result, a product candidate approved on this basis is subject to rigorous post-marketing compliance requirements, including the completion of Phase 4 or post-approval clinical trials to confirm the effect on the clinical endpoint. Failure to conduct required post-approval studies, or confirm a clinical benefit during post-marketing studies, would allow the FDA to withdraw the product from the market on an expedited basis. All promotional materials for product candidates approved under accelerated regulations are subject to prior review by the FDA.

The FDA's Decision on a NDA

        On the basis of the FDA's evaluation of the NDA and accompanying information, including the results of the inspection of the manufacturing facilities, the FDA may issue an approval letter or a complete response letter. An approval letter authorizes commercial marketing of the product with specific prescribing information for specific indications. A complete response letter generally outlines the deficiencies in the submission and may require substantial additional testing or information in order for the FDA to reconsider the application. If and when those deficiencies have been addressed to the FDA's satisfaction in a resubmission of the NDA, the FDA will issue an approval letter. The FDA has committed to reviewing such resubmissions in two or six months depending on the type of information included. Even with submission of this additional information, the FDA ultimately may decide that the application does not satisfy the regulatory criteria for approval.

        If the FDA approves a product, it may limit the approved indications for use for the product, require that contraindications, warnings or precautions be included in the product labeling, require that post-approval studies, including Phase 4 clinical trials, be conducted to further assess the drug's safety after approval, require testing and surveillance programs to monitor the product after commercialization, or impose other conditions, including distribution restrictions or other risk management mechanisms, including REMS, which can materially affect the potential market and profitability of the product. The FDA may prevent or limit further marketing of a product based on the results of post-market studies or surveillance programs. After approval, many types of changes to the approved product, such as adding new indications, manufacturing changes and additional labeling claims, are subject to further testing requirements and FDA review and approval.

Post-Approval Requirements

        Drugs manufactured or distributed pursuant to FDA approvals are subject to pervasive and continuing regulation by the FDA, including, among other things, requirements relating to recordkeeping, periodic reporting, product sampling and distribution, advertising and promotion and reporting of adverse experiences with the product. After approval, most changes to the approved product, such as adding new indications or other labeling claims, are subject to prior FDA review and approval. There also are continuing, annual user fee requirements for any marketed products and the establishments at which such products are manufactured, as well as new application fees for supplemental applications with clinical data.

        In addition, drug manufacturers and other entities involved in the manufacture and distribution of approved drugs are required to register their establishments with the FDA and state agencies, and are subject to periodic unannounced inspections by the FDA and these state agencies for compliance with cGMP requirements. Changes to the manufacturing process are strictly regulated and often require prior FDA approval before being implemented. FDA regulations also require investigation and correction of any deviations from cGMP and impose reporting and documentation requirements upon the NDA holder and any third-party manufacturers that the NDA holder may decide to use. Accordingly, manufacturers must continue to expend time, money, and effort in the area of production and quality control to maintain cGMP compliance.

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        Once an approval is granted, the FDA may withdraw the approval if compliance with regulatory requirements and standards is not maintained or if problems occur after the product reaches the market. Later discovery of previously unknown problems with a product, including adverse events of unanticipated severity or frequency, or with manufacturing processes, or failure to comply with regulatory requirements, may result in revisions to the approved labeling to add new safety information; imposition of post-market studies or clinical trials to assess new safety risks; or imposition of distribution or other restrictions under a REMS program. Other potential consequences include, among other things:

    restrictions on the marketing or manufacturing of the product, complete withdrawal of the product from the market or voluntary product recalls;

    fines, warning letters or holds on post-approval clinical trials;

    refusal of the FDA to approve pending NDAs or supplements to approved NDAs, or suspension or revocation of product approvals;

    product seizure or detention, or refusal to permit the import or export of products; or

    injunctions or the imposition of civil or criminal penalties.

        The FDA strictly regulates marketing, labeling, advertising and promotion of products that are placed on the market. Drugs may be promoted only for the approved indications and in accordance with the provisions of the approved label. The FDA and other agencies actively enforce the laws and regulations prohibiting the promotion of off-label uses, and a company that is found to have improperly promoted off-label uses may be subject to significant liability.

        In addition, the distribution of prescription pharmaceutical products is subject to the Prescription Drug Marketing Act, or PDMA, which regulates the distribution of drugs and drug samples at the federal level, and sets minimum standards for the registration and regulation of drug distributors by the states. Both the PDMA and state laws limit the distribution of prescription pharmaceutical product samples and impose requirements to ensure accountability in distribution.

Abbreviated New Drug Applications for Generic Drugs

        In 1984, with passage of the Hatch-Waxman Amendments to the FDCA, Congress authorized the FDA to approve generic drugs that are the same as drugs previously approved by the FDA under the NDA provisions of the statute. To obtain approval of a generic drug, an applicant must submit an abbreviated new drug application, or ANDA, to the agency. In support of such applications, a generic manufacturer may rely on the preclinical and clinical testing previously conducted for a drug product previously approved under a NDA, known as the reference-listed drug, or RLD.

        Specifically, in order for an ANDA to be approved, the FDA must find that the generic version is identical to the RLD with respect to the active ingredients, the route of administration, the dosage form, and the strength of the drug. At the same time, the FDA must also determine that the generic drug is "bioequivalent" to the innovator drug. Under the statute, a generic drug is bioequivalent to a RLD if "the rate and extent of absorption of the drug do not show a significant difference from the rate and extent of absorption of the listed drug."

        Upon approval of an ANDA, the FDA indicates whether the generic product is "therapeutically equivalent" to the RLD in its publication "Approved Drug Products with Therapeutic Equivalence Evaluations," also referred to as the "Orange Book." Physicians and pharmacists consider a therapeutic equivalent generic drug to be fully substitutable for the RLD. In addition, by operation of certain state laws and numerous health insurance programs, the FDA's designation of therapeutic equivalence often results in substitution of the generic drug without the knowledge or consent of either the prescribing physician or patient.

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        Under the Hatch-Waxman Amendments, the FDA may not approve an ANDA until any applicable period of non-patent exclusivity for the RLD has expired. The FDCA provides a period of five years of non-patent data exclusivity for a new drug containing a new chemical entity. For the purposes of this provision, a new chemical entity, or NCE, is a drug that contains no active moiety that has previously been approved by the FDA in any other NDA. An active moiety is the molecule or ion responsible for the physiological or pharmacological action of the drug substance. In cases where such NCE exclusivity has been granted, an ANDA may not be filed with the FDA until the expiration of five years unless the submission is accompanied by a Paragraph IV certification, which states the proposed generic drug will not infringe the already approved product's listed patents or that such patents are invalid or unenforceable, in which case the applicant may submit its application four years following the original product approval.

        The FDCA also provides for a period of three years of exclusivity if the NDA includes reports of one or more new clinical investigations, other than bioavailability or bioequivalence studies, that were conducted by or for the applicant and are essential to the approval of the application. This three-year exclusivity period often protects changes to a previously approved drug product, such as a new dosage form, route of administration, combination or indication. Three-year exclusivity would be available for a drug product that contains a previously approved active moiety, provided the statutory requirement for a new clinical investigation is satisfied. Unlike five-year NCE exclusivity, an award of three-year exclusivity does not block the FDA from accepting ANDAs seeking approval for generic versions of the drug as of the date of approval of the original drug product. The FDA typically makes decisions about awards of data exclusivity shortly before a product is approved.

Hatch-Waxman Patent Certification and the 30-Month Stay

        Upon approval of a NDA or a supplement thereto, NDA sponsors are required to list with the FDA each patent with claims that cover the applicant's product or an approved method of using the product. Each of the patents listed by the NDA sponsor is published in the Orange Book. When an ANDA applicant files its application with the FDA, the applicant is required to certify to the FDA concerning any patents listed for the reference product in the Orange Book, except for patents covering methods of use for which the ANDA applicant is not seeking approval. An applicant who submits a section 505(b)(2) NDA, which is for new or improved formulations or new uses of previously approved drug products and where at least one or more of the investigations relied upon by the applicant for approval were not conducted by or for the applicant and for which the applicant has not obtained a right of reference or use from the person by or for whom the investigations were conducted, also must certify to the FDA concerning any patents listed for the approved product in the Orange Book to the same extent that an ANDA applicant would.

        Specifically, the applicant must certify with respect to each patent that:

    the required patent information has not been filed;

    the listed patent has expired;

    the listed patent has not expired, but will expire on a particular date and approval is sought after patent expiration; or

    the listed patent is invalid, unenforceable or will not be infringed by the new product.

        A certification that the new product will not infringe the already approved product's listed patents or that such patents are invalid or unenforceable is called a Paragraph IV certification. If the applicant does not challenge the listed patents or indicates that it is not seeking approval of a patented method of use, the ANDA application will not be approved until all the listed patents claiming the referenced product have expired (other than method of use patents involving indications for which the ANDA applicant is not seeking approval).

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        If the ANDA applicant has provided a Paragraph IV certification to the FDA, the applicant must also send notice of the Paragraph IV certification to the NDA and patent holders once the ANDA has been accepted for filing by the FDA. The NDA and patent holders may then initiate a patent infringement lawsuit in response to the notice of the Paragraph IV certification. The filing of a patent infringement lawsuit within 45 days after the receipt of a Paragraph IV certification automatically prevents the FDA from approving the ANDA until the earlier of 30 months after the receipt of the Paragraph IV notice, expiration of the patent, or a decision in the infringement case that is favorable to the ANDA applicant.

Pediatric Studies and Exclusivity

        Under the Pediatric Research Equity Act of 2003, a NDA or supplement thereto must contain data that are adequate to assess the safety and effectiveness of the drug product for the claimed indications in all relevant pediatric subpopulations, and to support dosing and administration for each pediatric subpopulation for which the product is safe and effective. With enactment of the Food and Drug Administration Safety and Innovation Act, or FDASIA, in 2012, sponsors must also submit pediatric study plans prior to the assessment data. Those plans must contain an outline of the proposed pediatric study or studies the applicant plans to conduct, including study objectives and design, any deferral or waiver requests, and other information required by regulation. The applicant, the FDA, and the FDA's internal review committee must then review the information submitted, consult with each other, and agree upon a final plan. The FDA or the applicant may request an amendment to the plan at any time.

        The FDA may, on its own initiative or at the request of the applicant, grant deferrals for submission of some or all pediatric data until after approval of the product for use in adults, or full or partial waivers from the pediatric data requirements. Additional requirements and procedures relating to deferral requests and requests for extension of deferrals are contained in FDASIA. Unless otherwise required by regulation, the pediatric data requirements do not apply to products with orphan designation.

        Pediatric exclusivity is another type of non-patent marketing exclusivity in the United States and, if granted, provides for the attachment of an additional six months of marketing protection to the term of any existing regulatory exclusivity, including the non-patent and orphan exclusivity. This six-month exclusivity may be granted if a NDA sponsor submits pediatric data that fairly respond to a written request from the FDA for such data. The data do not need to show the product to be effective in the pediatric population studied; rather, if the clinical trial is deemed to fairly respond to the FDA's request, the additional protection is granted. If reports of requested pediatric studies are submitted to and accepted by the FDA within the statutory time limits, whatever statutory or regulatory periods of exclusivity or patent protection cover the product are extended by six months. This is not a patent term extension, but it effectively extends the regulatory period during which the FDA cannot approve another application.

Orphan Drug Designation and Exclusivity

        Under the Orphan Drug Act, the FDA may designate a drug product as an "orphan drug" if it is intended to treat a rare disease or condition (generally meaning that it affects fewer than 200,000 individuals in the United States, or more in cases in which there is no reasonable expectation that the cost of developing and making a drug product available in the United States for treatment of the disease or condition will be recovered from sales of the product). A company must request orphan product designation before submitting a NDA. If the request is granted, the FDA will disclose the identity of the therapeutic agent and its potential use. Orphan product designation does not convey any advantage in or shorten the duration of the regulatory review and approval process.

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        If a product with orphan status receives the first FDA approval for the disease or condition for which it has such designation or for a select indication or use within the rare disease or condition for which it was designated, the product generally will be receiving orphan product exclusivity. Orphan product exclusivity means that the FDA may not approve any other applications for the same product for the same indication for seven years, except in certain limited circumstances. Competitors may receive approval of different products for the indication for which the orphan product has exclusivity and may obtain approval for the same product but for a different indication. If a drug or drug product designated as an orphan product ultimately receives marketing approval for an indication broader than what was designated in its orphan product application, it may not be entitled to exclusivity.

Patent Term Restoration and Extension

        A patent claiming a new drug product may be eligible for a limited patent term extension under the Hatch-Waxman Amendments, which permits a patent restoration of up to five years for patent term lost during product development and the FDA regulatory review. The restoration period granted is typically one-half the time between the effective date of an IND and the submission date of a NDA, plus the time between the submission date of a NDA and the ultimate approval date. Patent term restoration cannot be used to extend the remaining term of a patent past a total of 14 years from the product's approval date. Only one patent applicable to an approved drug product is eligible for the extension, and the application for the extension must be submitted prior to the expiration of the patent in question. A patent that covers multiple drugs for which approval is sought can only be extended in connection with one of the approvals. The U.S. Patent and Trademark Office reviews and approves the application for any patent term extension or restoration in consultation with the FDA.

Europe/Rest of World Regulation

        In addition to regulations in the United States, a manufacturer is subject to a variety of regulations in other jurisdictions governing, among other things, clinical trials and any commercial sales and distribution of products, if approved. Even if a manufacturer obtains FDA approval of a product, it must still obtain the requisite approvals from regulatory authorities in foreign countries prior to the commencement of clinical trials or marketing of the product in those countries. Certain countries outside of the United States have a similar process that requires the submission of a clinical trial application much like the IND prior to the commencement of human clinical trials. In the European Union, for example, a clinical trial application must be submitted to each country's national health authority and an independent ethics committee, much like the FDA and IRB, respectively. Once the clinical trial application is approved in accordance with a country's requirements, clinical trial development may proceed. To obtain regulatory approval of an investigational drug under EU regulatory systems, a manufacturer must submit a marketing authorization application. More concretely, in the EEA (which is comprised of the 28 Member States of the EU plus Norway, Liechtenstein and Iceland, medicinal products can only be commercialized after obtaining a Marketing Authorization, or MA. There are two types of marketing authorizations:

    The Community MA, which is issued by the European Commission through the Centralized Procedure, based on the opinion of the Committee for Medicinal Products for Human Use of the European Medicines Agency, or EMA, and which is valid throughout the entire territory of the EEA. The Centralized Procedure is mandatory for certain types of products, such as biotechnology medicinal products, orphan medicinal products, and medicinal products indicated for the treatment of AIDS, cancer, neurodegenerative disorders, diabetes, auto-immune and viral diseases. The Centralized Procedure is optional for products containing a new active substance not yet authorized in the EEA, or for products that constitute a significant therapeutic, scientific or technical innovation or which are in the interest of public health in the EU.

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    National MAs, which are issued by the competent authorities of the Member States of the EEA and only cover their respective territory, are available for products not falling within the mandatory scope of the Centralized Procedure. Where a product has already been authorized for marketing in a Member State of the EEA, this National MA can be recognized in another Member State through the Mutual Recognition Procedure. If the product has not received a National MA in any Member State at the time of application, it can be approved simultaneously in various Member States through the Decentralized Procedure.

        Under the above described procedures, before granting the MA, the EMA or the competent authorities of the Member States of the EEA make an assessment of the risk-benefit balance of the product on the basis of scientific criteria concerning its quality, safety and efficacy.

        For other countries outside of the European Union, such as countries in Eastern Europe, Latin America or Asia, the requirements governing the conduct of clinical trials, product approval, pricing and reimbursement vary from country to country. In all cases, the clinical trials are to be conducted in accordance with GCP and the applicable regulatory requirements and the ethical principles that have their origin in the Declaration of Helsinki.

Pharmaceutical Coverage, Pricing and Reimbursement

        Significant uncertainty exists as to the coverage and reimbursement status of products approved by the FDA and other government authorities. Sales of products will depend, in part, on the extent to which third-party payors, including government health programs in the United States such as Medicare and Medicaid, commercial health insurers and managed care organizations, provide coverage, and establish adequate reimbursement levels for, such products. The process for determining whether a payor will provide coverage for a product may be separate from the process for setting the price or reimbursement rate that the payor will pay for the product once coverage is approved. Third-party payors are increasingly challenging the prices charged, examining the medical necessity, and reviewing the cost-effectiveness of medical products and services and imposing controls to manage costs. Third-party payors may limit coverage to specific products on an approved list, or formulary, which might not include all of the approved products for a particular indication.

        In order to secure coverage and reimbursement for any product approved for sale, a company may need to conduct expensive pharmacoeconomic studies in order to demonstrate the medical necessity and cost-effectiveness of the product, in addition to the costs required to obtain FDA or other comparable regulatory approvals. Nonetheless, product candidates may not be considered medically necessary or cost effective. Additionally, a payor's decision to provide coverage for a drug product does not imply that an adequate reimbursement rate will be approved. Further, one payor's determination to provide coverage for a drug product does not assure that other payors will also provide coverage for the drug product. Third-party reimbursement may not be sufficient to maintain price levels high enough to realize an appropriate return on investment in product development.

        The containment of healthcare costs also has become a priority of federal, state and foreign governments and the prices of drugs have been a focus in this effort. Governments have shown significant interest in implementing cost-containment programs, including price controls, restrictions on reimbursement and requirements for substitution of generic products. Adoption of price controls and cost-containment measures, and adoption of more restrictive policies in jurisdictions with existing controls and measures, could further limit our net revenue and results. Coverage policies and third-party reimbursement rates may change at any time. Even if favorable coverage and reimbursement status is attained for one or more products for which a company or its collaborators receive regulatory approval, less favorable coverage policies and reimbursement rates may be implemented in the future.

        Outside the United States, ensuring adequate coverage and payment for our product candidates will face challenges. Pricing of prescription pharmaceuticals is subject to governmental control in many

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countries. Pricing negotiations with governmental authorities can extend well beyond the receipt of regulatory marketing approval for a product and may require us to conduct a clinical trial that compares the cost effectiveness of our product candidates or products to other available therapies. The conduct of such a clinical trial could be expensive and result in delays in our commercialization efforts.

        In the European Union, pricing and reimbursement schemes vary widely from country to country. Some countries provide that drug products may be marketed only after a reimbursement price has been agreed. Some countries may require the completion of additional studies that compare the cost-effectiveness of a particular drug candidate to currently available therapies. For example, the European Union provides options for its member states to restrict the range of drug products for which their national health insurance systems provide reimbursement and to control the prices of medicinal products for human use. European Union member states may approve a specific price for a drug product or it may instead adopt a system of direct or indirect controls on the profitability of the company placing the drug product on the market. Other member states allow companies to fix their own prices for drug products, but monitor and control company profits. The downward pressure on health care costs in general, particularly prescription drugs, has become intense. As a result, increasingly high barriers are being erected to the entry of new products. In addition, in some countries, cross-border imports from low-priced markets exert competitive pressure that may reduce pricing within a country. Any country that has price controls or reimbursement limitations for drug products may not allow favorable reimbursement and pricing arrangements.

Other Healthcare Laws and Regulations

        Healthcare providers and third-party payors play a primary role in the recommendation and prescription of drug products that are granted regulatory approval. Arrangements with providers, consultants, third-party payors and customers are subject to broadly applicable fraud and abuse and other healthcare laws and regulations that may constrain our business and/or financial arrangements. Such restrictions under applicable federal and state healthcare laws and regulations, include, without limitation, state and federal anti-kickback, fraud and abuse, false claims, privacy and security, price reporting and physician sunshine laws. Some of our pre-commercial activities are subject to some of these laws.

        The federal Anti-Kickback Statute makes it illegal for any person or entity, including a prescription drug manufacturer or a party acting on its behalf to knowingly and willfully, directly or indirectly, solicit, receive, offer, or provide any remuneration that is intended to induce the referral of business, including the purchase, order or recommendation or arranging of, any good or service for which payment may be made under a federal healthcare program, such as Medicare or Medicaid. The term "remuneration" has been broadly interpreted to include anything of value. The Anti-Kickback Statute has been interpreted to apply to arrangements between pharmaceutical manufacturers on one hand and prescribers, purchasers, formulary managers, and beneficiaries on the other. Although there are a number of statutory exceptions and regulatory safe harbors protecting some common activities from prosecution, the exceptions and safe harbors are drawn narrowly. Practices that involve remuneration that may be alleged to be intended to induce prescribing, purchases or recommendations may be subject to scrutiny if they do not qualify for an exception or safe harbor. Failure to meet all of the requirements of a particular applicable statutory exception or regulatory safe harbor does not make the conduct per se illegal under the Anti-Kickback Statute. Instead, the legality of the arrangement will be evaluated on a case-by-case basis based on a cumulative review of all its facts and circumstances. Several courts have interpreted the statute's intent requirement to mean that if any one purpose of an arrangement involving remuneration is to induce referrals of federal healthcare covered business, the Anti-Kickback Statute has been violated. In addition, a person or entity does not need to have actual knowledge of the statute or specific intent to violate it in order to have committed a violation. Violations of this law are punishable by up to five years in prison, and can also result in criminal fines,

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civil money penalties and exclusion from participation in federal healthcare programs. Moreover, a claim including items or services resulting from a violation of the federal Anti-Kickback Statute constitutes a false or fraudulent claim for purposes of the federal civil False Claims Act.

        The federal civil False Claims Act prohibits, among other things, any person or entity from knowingly presenting, or causing to be presented, for payment to, or approval by, federal programs, including Medicare and Medicaid, claims for items or services, including drugs, that are false or fraudulent or not provided as claimed. Persons and entities can be held liable under these laws if they are deemed to "cause" the submission of false or fraudulent claims by, for example, providing inaccurate billing or coding information to customers or promoting a product off-label. In addition, any of our future activities relating to the reporting of wholesaler or estimated retail prices for our products, the reporting of prices used to calculate Medicaid rebate information and other information affecting federal, state and third-party reimbursement for our products, and the sale and marketing of our products, are subject to scrutiny under this law. Penalties for federal civil False Claims Act violations may include up to three times the actual damages sustained by the government, plus mandatory civil penalties of between $10,781 and $21,563 for each separate false claim, the potential for exclusion from participation in federal healthcare programs, and, although the federal False Claims Act is a civil statute, False Claims Act violations may also implicate various federal criminal statutes.

        The federal Health Insurance Portability and Accountability Act of 1996, or HIPAA, created new federal criminal statutes that prohibit among other actions, knowingly and willfully executing, or attempting to execute, a scheme to defraud any healthcare benefit program, including private third-party payors, knowingly and willfully embezzling or stealing from a healthcare benefit program, willfully obstructing a criminal investigation of a healthcare offense, and knowingly and willfully falsifying, concealing or covering up a material fact or making any materially false, fictitious or fraudulent statement in connection with the delivery of or payment for healthcare benefits, items or services. Like the federal Anti-Kickback Statute a person or entity does not need to have actual knowledge of the statute or specific intent to violate it in order to have committed a violation. The civil monetary penalties statute imposes penalties against any person or entity that, among other things, is determined to have presented or caused to be presented a claim to a federal health program that the person knows or should know is for an item or service that was not provided as claimed or is false or fraudulent. Also, many states have similar fraud and abuse statutes or regulations that may be broader in scope and may apply regardless of payor, in addition to items and services reimbursed under Medicaid and other state programs. Additionally, to the extent that any of our product candidates, if approved, are sold in a foreign country, we may be subject to similar foreign laws.

        HIPAA, as amended by the Health Information Technology for Economic and Clinical Health Act, or HITECH, and their implementing regulations, including the final omnibus rule published on January 25, 2013, mandates, among other things, the adoption of uniform standards for the electronic exchange of information in common healthcare transactions, as well as standards relating to the privacy and security of individually identifiable health information, which require the adoption of administrative, physical and technical safeguards to protect such information. Among other things, HITECH makes HIPAA's security standards directly applicable to business associates, defined as independent contractors or agents of covered entities that create, receive or obtain protected health information in connection with providing a service for or on behalf of a covered entity. HITECH also increased the civil and criminal penalties that may be imposed against covered entities and business associates, and gave state attorneys general new authority to file civil actions for damages or injunctions in federal courts to enforce the federal HIPAA laws and seek attorney's fees and costs associated with pursuing federal civil actions. In addition, certain state laws govern the privacy and security of health information in certain circumstances, some of which are more stringent than HIPAA and many of which differ from each other in significant ways and may not have the same effect, thus complicating

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compliance efforts. Failure to comply with these laws, where applicable, can result in the imposition of significant civil and criminal penalties.

        The Affordable Care Act, or ACA, imposed, among other things, new annual reporting requirements for covered manufacturers for certain payments and other transfers of value provided to physicians and teaching hospitals, as well as certain ownership and investment interests held by physicians and their immediate family members. Failure to submit timely, accurately and completely the required information for all payments, transfers of value and ownership or investment interests may result in civil monetary penalties of up to an aggregate of $150,000 per year and up to an aggregate of $1 million per year for "knowing failures." Certain states also mandate implementation of compliance programs, impose restrictions on drug manufacturer marketing practices or require the tracking and reporting of gifts, compensation or other remuneration to physicians.

        Because we intend to commercialize products that could be reimbursed under a federal healthcare program and other governmental healthcare programs, we intend to develop a comprehensive compliance program that establishes internal control to facilitate adherence to the rules and program requirements to which we will or may become subject. Although the development and implementation of compliance programs designed to establish internal control and facilitate compliance can mitigate the risk of investigation, prosecution, and penalties assessed for violations of these laws, the risks cannot be entirely eliminated.

        If our operations are found to be in violation of any of such laws or any other governmental regulations that apply to us, we may be subject to penalties, including, without limitation, administrative, civil and criminal penalties, damages, fines, disgorgement, contractual damages, reputational harm, diminished profits and future earnings, the curtailment or restructuring of our operations, exclusion from participation in federal and state healthcare programs and individual imprisonment, any of which could adversely affect our ability to operate our business and our financial results.

Healthcare Reform

        There have been a number of federal and state proposals during the last few years regarding the pricing of pharmaceutical and biopharmaceutical products, government control and other changes to the healthcare system in the United States.

        By way of example, the United States and state governments continue to propose and pass legislation designed to reduce the cost of healthcare. In March 2010, the United States Congress passed the ACA, which, among other things, includes changes to the coverage and payment for drug products under government health care programs. Among the provisions of the ACA of importance to our potential drug candidates are:

    an annual, nondeductible fee on any entity that manufactures or imports specified branded prescription drugs and biologic products, apportioned among these entities according to their market share in certain government healthcare programs;

    expansion of eligibility criteria for Medicaid programs by, among other things, allowing states to offer Medicaid coverage to certain individuals with income at or below 133% of the federal poverty level, thereby potentially increasing a manufacturer's Medicaid rebate liability;

    expansion of manufacturers' rebate liability under the Medicaid Drug Rebate Program by increasing the minimum rebate for both branded and generic drugs and revising the definition of "average manufacturer price," or AMP, for calculating and reporting Medicaid drug rebates on outpatient prescription drug prices;

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    a new methodology by which rebates owed by manufacturers under the Medicaid Drug Rebate Program are calculated for drugs that are inhaled, infused, instilled, implanted or injected;

    expansion of the types of entities eligible for the 340B drug discount program;

    establishment of the Medicare Part D coverage gap discount program by requiring manufacturers to provide a 50% point-of-sale-discount off the negotiated price of applicable brand drugs to eligible beneficiaries during their coverage gap period as a condition for the manufacturers' outpatient drugs to be covered under Medicare Part D; and

    a new Patient-Centered Outcomes Research Institute to oversee, identify priorities in, and conduct comparative clinical effectiveness research, along with funding for such research.

        Other legislative changes have been proposed and adopted in the United States since the ACA was enacted. For example, in August 2011, the Budget Control Act of 2011, among other things, created measures for spending reductions by Congress. A Joint Select Committee on Deficit Reduction, tasked with recommending a targeted deficit reduction of at least $1.2 trillion for the years 2012 through 2021, was unable to reach required goals, thereby triggering the legislation's automatic reduction to several government programs. This includes aggregate reductions of Medicare payments to providers of 2% per fiscal year, which went into effect in April 2013 and will remain in effect through 2025 unless additional Congressional action is taken. In January 2013, President Obama signed into law the American Taxpayer Relief Act of 2012, which, among other things, further reduced Medicare payments to several providers, including hospitals, imaging centers and cancer treatment centers, and increased the statute of limitations period for the government to recover overpayments to providers from three to five years.

        There have been, and likely will continue to be, legislative and regulatory proposals at the foreign, federal and state levels directed at broadening the availability of healthcare and containing or lowering the cost of healthcare. Such reforms could have an adverse effect on anticipated revenues from product candidates that we may successfully develop and for which we may obtain regulatory approval and may affect our overall financial condition and ability to develop product candidates.

Employees

        As of June 30, 2016, we had 40 full-time or part-time employees, including 19 employees with M.D. or Ph.D. degrees. Of these employees, 34 employees are engaged in research and development activities and 6 employees are engaged in general and administrative activities. None of our employees are represented by labor unions or covered by collective bargaining agreements. We consider the relationship with our employees to be good.

Facilities

        We occupy approximately 27,000 rentable square feet of office and laboratory space in Cambridge, Massachusetts under a lease that expires in April 2023. We have an option to extend the lease term for five additional years. We believe that this office and laboratory space is sufficient to meet our current needs and that suitable additional space will be available as and when needed.

Legal Proceedings

        We are not currently subject to any material legal proceedings.

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MANAGEMENT

        The following table sets forth the name, age and position of each of our executive officers and directors, as of August 1, 2016:

Name
  Age   Position

Executive Officers

         

Douglas A. Treco, Ph.D. 

    58   Director, President and Chief Executive Officer

David C. Lubner

    52   Executive Vice President and Chief Financial Officer

Simon Read, Ph.D. 

    45   Chief Scientific Officer

Ramin Farzaneh-Far, M.D. 

    39   Chief Medical Officer

Non-Employee Directors

   
 
 

 

Peter Tuxen Bisgaard

    42   Director

Markus Goebel, M.D., Ph.D. (4)

    63   Director

Robert Heft, Ph.D. 

    61   Director

Jason Lettmann

    39   Director

Edward T. Mathers

    56   Director

Timothy R. Pearson

    48   Director

Rajeev Shah

    39   Director

(1)
Member of the audit committee
(2)
Member of the compensation committee
(3)
Member of the nominating and corporate governance committee
(4)
Dr. Goebel has notified the company that he will resign from our board of directors immediately prior to the effectiveness of the registration statement of which this prospectus forms a part.

Executive Officers

         Douglas A. Treco, Ph.D. has been our Chief Executive Officer since our inception in June 2008, and also serves on our board of directors. Dr. Treco worked at Morgenthaler Ventures as an entrepreneur-in-residence between January 2008 and May 2014. In 1988, he co-founded Transkaryotic Therapies Inc., a multi-platform biopharmaceutical company that developed protein and gene therapy products, which was acquired in 2005 by Shire Pharmaceuticals Group plc. Prior to that, Dr. Treco was a visiting scientist in the Department of Molecular Biology at Massachusetts General Hospital and a lecturer in genetics at Harvard Medical School from 2004 to 2007. Dr. Treco received his Ph.D. in biochemistry and molecular biology from the State University of New York, Stony Brook, and performed postdoctoral studies at the Salk Institute for Biological Studies and Massachusetts General Hospital. We believe Dr. Treco is qualified to serve on our board of directors because of his extensive and broad range of experience in business and healthcare product development, including his experience co-founding and growing a company in the biopharmaceutical industry.

         David C. Lubner has been our Executive Vice President and Chief Financial Officer since January 2016. Before joining our company, Mr. Lubner served as a member of the senior management team of Tetraphase Pharmaceuticals, Inc., a biotechnology company, from its inception in 2006 through 2015. From 2010 to 2015, Mr. Lubner served as Senior Vice President and the Chief Financial Officer of Tetraphase, where he led financial operations and was responsible for corporate finance activities. From 1999 to 2005, he served as the Chief Financial Officer of PharMetrics Inc., a pharmacy and medical claims data informatics company. Prior to joining PharMetrics, Mr. Lubner served as Vice President and Chief Financial Officer of ProScript, Inc. from 1996 to 1999. Mr. Lubner is a member of the American Institute of CPAs and a Certified Public Accountant in the Commonwealth of Massachusetts. Mr. Lubner received his B.S. in business administration from Northeastern University and M.S. in taxation from Bentley University.

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         Simon Read, Ph.D ., has been our Chief Scientific Officer since April 2016. Prior to joining our company, Dr. Read served as a Vice President and Head of the Innovative Medicines Unit at Grunenthal GmbH, a pharmaceutical company headquartered in Aachen, Germany, from 2014 to March 2016. Prior to that, Dr. Read served as Vice President and Head of Global Biomedical Sciences at Grunenthal from 2011 to 2014. Before joining Grunenthal, Dr. Read was the Director, Experimental Medicine and Biomarkers, Immunology with Roche Products / Genentech Inc. from 2008 to 2011. Dr. Read has been a member of the Medical Research Council and Association of British Pharmaceutical Industry Steering Committee for the U.K.'s Immunology Consortium since 2012. Dr. Read has been a member of the Boston Children's Hospital Technology Development Fund steering group since 2016. Dr. Read received his B.Sc. in Physiology from University of Manchester, M.Sc. from University of Southampton and Ph.D. from University of Hertfordshire.

         Ramin Farzaneh-Far, M.D., joined our company in July 2016 as our Chief Medical Officer. Before joining our company, from 2015 to 2016, he served as the Vice President of Medical Research at Akebia Therapeutics, Inc. From 2012 until he joined Akebia, Dr. Farzaneh-Far served as the Director of Clinical Research at Gilead Sciences, Inc., where he led the clinical development of multiple assets in the cardiovascular therapeutic area. Dr. Farzaneh-Far held various academic faculty positions at the University of California, San Francisco, or UCSF, and the University of Texas Southwestern Medical Center from 2009 to 2012. He completed his internal medicine residency at Brigham & Women's Hospital in Boston, and trained in cardiovascular medicine at UCSF. Dr. Farzaneh-Far received his B.A. and M.A. degrees in immunology from the University of Cambridge, his M.D. from University College London, and his MAS in Clinical Research from UCSF.

Non-Employee Directors

         Peter Tuxen Bisgaard has served as a member of our board of directors since 2015. Since 2009, Mr. Bisgaard has been employed as a partner at Novo Ventures (US) Inc., which provides consultancy services to Novo A/S, a Danish limited liability company that manages investments and financial assets. He is a member of the board of directors of Ceterix Orthopaedics Inc., Entasis Therapeutics Inc. and Outpost Medicine, LLC, as well as chairman of the board of directors of HTG Molecular Diagnostics Inc. Mr. Bisgaard obtained his M.Sc. in 1998 from the Technical University of Denmark and was at the same time awarded a post graduate degree in mathematical modeling in economics by the European Consortium for Mathematics in the Industry. We believe Mr. Bisgaard is qualified to serve on our board of directors because of his financial expertise, extensive industry experience, his experience serving on the board of directors for several biopharmaceutical and medtech companies, and his experience with venture capital investments.

         Markus Goebel, M.D., Ph.D. has served on our board of directors since 2010. Since 2004, Dr. Goebel has served as a Managing Director at Novartis Venture Fund. Dr. Goebel serves on the boards of several Novartis Venture Fund portfolio companies. Dr. Goebel received an M.D. and a Ph.D. from the Ludwig Maximilian's University in Munich and an M.B.A. from Henley Management College. We believe Dr. Goebel is qualified to serve on our board of directors because of his extensive industry experience, his experience serving on the board of directors for several biopharmaceutical companies, and his experience with venture capital investments. Dr. Goebel has notified us that he will resign from our board of directors immediately prior to the effectiveness of the registration statement of which this prospectus forms a part. Dr. Goebel's resignation is not due to any disagreement with the company or any matters relating to our operations, policies or practices.

         Robert Heft, Ph.D. has served on our board of directors since March 2016. Dr. Heft currently serves as Chief Executive Officer of Zingenix Ltd., a company focused on gene therapy for severe orphan disorders. Prior to joining Zingenix in 2014, Dr. Heft was President, Chief Executive Officer, and a member of the board of directors of Enobia Pharma Inc. from 2005 to 2012. Dr. Heft currently serves on the boards of Zingenix Ltd., VisionGate, Inc., Lumos Pharma Inc., and Clementia

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Pharmaceuticals, Inc., and as Chairman of the Board of ELOXX Pharmaceuticals, Ltd. He also serves on the Advisory Board of Sectoral Asset Management. Dr. Heft obtained his Ph.D. from the Massachusetts Institute of Technology in genetic engineering and radiological sciences, as well as a Master of Engineering Degree from McGill University and a Bachelor of Engineering Degree from Cornell University. We believe Dr. Heft is qualified to serve on our board of directors because of his extensive leadership experience in senior management roles for multiple companies in the biopharmaceutical industry and his experience serving on the board of directors for multiple industry-related companies.

         Jason Lettmann has served as a member of our board of directors since 2015. Mr. Lettmann has been a partner of Morgenthaler Ventures since June 2009 and a partner of Lightstone Ventures since March 2012. Mr. Lettmann currently represents Morgenthaler and Lightstone on the boards of a number of their portfolio companies including Alexo Therapeutics Ltd., Carrick Therapeutics Ltd., FIRE1 Ltd., Promedior Inc., Relievant Medsystems Inc., Second Genome Inc., and Vapotherm Inc. Prior to joining Morgenthaler in 2009, Mr. Lettmann was a Vice President at Split Rock Partners where he focused on early-stage venture investments in medical devices and the life sciences. Mr. Lettmann has an M.B.A. from the University of Michigan's Ross School of Business and a B.A. from the University of Iowa. We believe Mr. Lettmann is qualified to serve on our board of directors because of his industry experience, his experience serving on the boards of directors for multiple industry-related companies, and his extensive experience with venture capital investments.

         Edward T. Mathers has served as a member of our board of directors since 2010. Since August 2008, Mr. Mathers has been a partner at New Enterprise Associates, Inc., a private venture capital firm focusing on technology and healthcare investments. Mr. Mathers is a director of Liquidia Technologies Inc., Rhythm Pharmaceuticals Inc., Envisia Therapeutics Inc., Synlogic, Inc., Mirna Therapeutics, Inc., Lumos Pharma, Inc., Ziarco, Inc., Amplyx Pharmaceuticals, Inc. and ObsEva SA. He is also a member of NC State's College of Sciences Foundation board. Mr. Mathers earned his B.S. in chemistry from North Carolina State University. We believe that Mr. Mather is qualified to serve on our board of directors because of his extensive experience in the life sciences industry as a venture capitalist and senior executive, as well as his service on the boards of directors of numerous companies.

         Timothy R. Pearson has served as a member of our board of directors since May 2016. Mr. Pearson currently serves as Chief Financial Officer of TESARO, Inc., an oncology-focused biopharmaceutical company, where he has served since May 2014. Prior to joining TESARO, Mr. Pearson served as Executive Vice President and Chief Financial Officer of Catalyst Health Solutions, Inc. from August 2011 to July 2012, where he led the finance and strategic planning functions. Mr. Pearson holds a B.S. in Business Administration from the University of Delaware, an M.S. in Finance from Loyola College and a B.S. in Accounting from the University of Maryland University College. He is also a Certified Public Accountant. We believe Mr. Pearson is qualified to serve on our board of directors because of his extensive experience serving in senior level financial positions of numerous companies, his experience with biopharmaceutical companies, and his executive leadership experience.

         Rajeev Shah has served as a member of our board of directors since July 2015. Mr. Shah is a portfolio manager and managing director at RA Capital Management, LLC, an investment advisory firm that invests in health care companies, since 2002. Mr. Shah received a B.A. in Chemistry from Cornell University. We believe Mr. Shah is qualified to serve on our board of directors because of his leadership and financial experience at RA Capital, his experience in the biopharmaceutical industry, and his experience with venture capital investments.

Composition of Our Board of Directors

        As of August 16, 2016, our board of directors consisted of eight members, each of whom are members pursuant to the board composition provisions of our certificate of incorporation and agreements with our stockholders. These board composition provisions will terminate upon the

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completion of this offering. Upon the termination of these provisions, there will be no further contractual obligations regarding the election of our directors. Our nominating and corporate governance committee and our board of directors may therefore consider a broad range of factors relating to the qualifications and background of nominees. Our nominating and corporate governance committee's and our board of directors' priority in selecting board members is the identification of persons who will further the interests of our stockholders through their established record of professional accomplishment, the ability to contribute positively to the collaborative culture among board members, knowledge of our business, understanding of the competitive landscape, and professional and personal experiences and expertise relevant to our growth strategy. Our directors hold office until their successors have been elected and qualified or until the earlier of their resignation or removal. Our amended and restated certificate of incorporation and amended and restated bylaws that will become effective upon the closing of this offering also provide that our directors may be removed only for cause by the affirmative vote of the holders of at least 75% of the votes that all our stockholders would be entitled to cast in an annual election of directors, and that any vacancy on our board of directors, including a vacancy resulting from an enlargement of our board of directors, may be filled only by vote of a majority of our directors then in office.

Director Independence

        Our board of directors has determined that all members of the board of directors, except                        , are independent directors, including for purposes of the rules of The NASDAQ Global Market and the Securities and Exchange Commission, or SEC. In making such independence determination, our board of directors considered the relationships that each non-employee director has with us and all other facts and circumstances that our board of directors deemed relevant in determining their independence, including the beneficial ownership of our capital stock by each non-employee director. In considering the independence of the directors listed above, our board of directors considered the association of our directors with the holders of more than 5% of our common stock. Upon the completion of this offering, we expect that the composition and functioning of our board of directors and each of our committees will comply with all applicable requirements of The NASDAQ Global Market and the rules and regulations of the SEC. There are no family relationships among any of our directors or executive officers. Dr. Treco is not an independent director under these rules because he is an executive officer of our company.

Staggered Board

        In accordance with the terms of our amended and restated certificate of incorporation and amended and restated bylaws that will become effective upon the closing of this offering, our board of directors will be divided into three staggered classes of directors and each will be assigned to one of the three classes. At each annual meeting of the stockholders, a class of directors will be elected for a three-year term to succeed the directors of the same class whose terms are then expiring. The terms of the directors will expire upon the election and qualification of successor directors at the annual meeting of stockholders to be held during the years 2017 for Class I directors, 2018 for Class II directors and 2019 for Class III directors.

    Our Class I directors will be                ;

    Our Class II directors will be                ; and

    Our Class III directors will be                .

        Our amended and restated certificate of incorporation and amended and restated bylaws that will become effective upon the closing of this offering will provide that the number of directors shall be fixed from time to time by a resolution of the majority of our board of directors.

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        The division of our board of directors into three classes with staggered three-year terms may delay or prevent stockholder efforts to effect a change of our management or a change in control.

Board Leadership Structure and Board's Role in Risk Oversight

        Currently, we do not have a chairman of the board. Upon the closing of this offering, we are planning to establish a role of the chairman of the board, and we plan to keep this role separated from the role of Chief Executive Officer following the completion of this offering. We believe that separating these positions allows our Chief Executive Officer to focus on our day-to-day business, while allowing a chairman of the board to lead the board of directors in its fundamental role of providing advice to and independent oversight of management. Our board of directors recognizes the time, effort and energy that the Chief Executive Officer is required to devote to his position in the current business environment, as well as the commitment required to serve as our chairman, particularly as the board of directors' oversight responsibilities continue to grow. While our amended and restated by-laws and corporate governance guidelines do not require that our chairman and Chief Executive Officer positions be separate, our board of directors believes that having separate positions is the appropriate leadership structure for us at this time and demonstrates our commitment to good corporate governance.

        Risk is inherent with every business, and how well a business manages risk can ultimately determine its success. We face a number of risks, including risks relating to our financial condition, development and commercialization activities, operations, strategic direction and intellectual property as more fully discussed in the section entitled "Risk Factors" appearing elsewhere in this prospectus. Management is responsible for the day-to-day management of risks we face, while our board of directors, as a whole and through its committees, has responsibility for the oversight of risk management. In its risk oversight role, our board of directors has the responsibility to satisfy itself that the risk management processes designed and implemented by management are adequate and functioning as designed.

        The role of the board of directors in overseeing the management of our risks is conducted primarily through committees of the board of directors, as disclosed in the descriptions of each of the committees below and in the charters of each of the committees. The full board of directors (or the appropriate board committee in the case of risks that are under the purview of a particular committee) discusses with management our major risk exposures, their potential impact on us, and the steps we take to manage them. When a board committee is responsible for evaluating and overseeing the management of a particular risk or risks, the chairman of the relevant committee reports on the discussion to the full board of directors during the committee reports portion of the next board meeting. This enables the board of directors and its committees to coordinate the risk oversight role, particularly with respect to risk interrelationships.

Committees of Our Board of Directors

        Our board of directors has established an audit committee, a compensation committee and a nominating and corporate governance committee, each of which will operate pursuant to a charter to be adopted by our board of directors and will be effective upon the effectiveness of the registration statement of which this prospectus is a part. Upon the effectiveness of the registration statement of which this prospectus is a part, the composition and functioning of all of our committees will comply with all applicable requirements of the Sarbanes-Oxley Act of 2002, NASDAQ and SEC rules and regulations.

Audit Committee

                    will serve on the audit committee, which will be chaired by                . Our board of directors has determined that                are "independent" for audit committee purposes as that term is

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defined in the rules of the SEC and the applicable NASDAQ rules, and each has sufficient knowledge in financial and auditing matters to serve on the audit committee. Our board of directors has designated                as an "audit committee financial expert," as defined under the applicable rules of the SEC. The audit committee's responsibilities include:

    appointing, approving the compensation of, and assessing the independence of our independent registered public accounting firm;

    pre-approving auditing and permissible non-audit services, and the terms of such services, to be provided by our independent registered public accounting firm;

    reviewing the overall audit plan with our independent registered public accounting firm and members of management responsible for preparing our financial statements;

    reviewing and discussing with management and our independent registered public accounting firm our annual and quarterly financial statements and related disclosures as well as critical accounting policies and practices used by us;

    coordinating the oversight and reviewing the adequacy of our internal control over financial reporting;

    establishing policies and procedures for the receipt and retention of accounting-related complaints and concerns;

    recommending based upon the audit committee's review and discussions with management and our independent registered public accounting firm whether our audited financial statements shall be included in our Annual Report on Form 10-K;

    monitoring the integrity of our financial statements and our compliance with legal and regulatory requirements as they relate to our financial statements and accounting matters;

    preparing the audit committee report required by SEC rules to be included in our annual proxy statement;

    reviewing all related person transactions for potential conflict of interest situations and approving all such transactions; and

    reviewing quarterly earnings releases.

Compensation Committee

                    will serve on the compensation committee, which will be chaired by                . Our board of directors has determined that each member of the compensation committee is "independent" as defined in the applicable NASDAQ rules. The compensation committee's responsibilities include:

    annually reviewing and recommending to the board of directors the corporate goals and objectives relevant to the compensation of our Chief Executive Officer;

    evaluating the performance of our Chief Executive Officer in light of such corporate goals and objectives and based on such evaluation: (i) recommending to the board of directors the cash compensation of our Chief Executive Officer and (ii) reviewing and approving grants and awards to our Chief Executive Officer under equity-based plans;

    reviewing and approving or recommending to the board of directors the cash compensation of our other executive officers;

    reviewing and establishing our overall management compensation, philosophy and policy;

    overseeing and administering our compensation and similar plans;

    evaluating and assessing potential and current compensation advisors in accordance with the independence standards identified in the applicable NASDAQ rules;

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    reviewing and approving our policies and procedures for the grant of equity-based awards;

    reviewing and recommending to the board of directors the compensation of our directors;

    preparing the compensation committee report required by SEC rules, if and when required, to be included in our annual proxy statement; and

    reviewing and approving the retention, termination or compensation of any consulting firm or outside advisor to assist in the evaluation of compensation matters.

Nominating and Corporate Governance Committee

                    will serve on the nominating and corporate governance committee, which will be chaired by                . Our board of directors has determined that each member of the nominating and corporate governance committee is "independent" as defined in the applicable NASDAQ rules. The nominating and corporate governance committee's responsibilities include:

    developing and recommending to the board of directors criteria for board and committee membership;

    establishing procedures for identifying and evaluating board of director candidates, including nominees recommended by stockholders;

    reviewing the composition of the board of directors to ensure that it is composed of members containing the appropriate skills and expertise to advise us;

    identifying individuals qualified to become members of the board of directors;

    recommending to the board of directors the persons to be nominated for election as directors and to each of the board's committees;

    developing and recommending to the board of directors a code of business conduct and ethics and a set of corporate governance guidelines; and

    overseeing the evaluation of our board of directors and management.

        Our board of directors may from time to time establish other committees.

Compensation Committee Interlocks and Insider Participation

        None of the members of our compensation committee has at any time during the prior three years been one of our officers or employees. None of our executive officers currently serves, or in the past fiscal year has served, as a member of the board of directors or compensation committee of any entity that has one or more executive officers serving on our board of directors or compensation committee.

Corporate Governance

        Prior to the effectiveness of the registration statement of which this prospectus is a part, we will adopt a written code of business conduct and ethics that applies to our directors, officers and employees, including our principal executive officer, principal financial officer, principal accounting officer or controller, or persons performing similar functions. Following the effectiveness of the registration statement of which this prospectus is a part, a current copy of the code will be posted on the investor relations section of our website, which is located at www.rapharma.com. If we make any substantive amendments to, or grant any waivers from, the code of business conduct and ethics for any officer or director, we will disclose the nature of such amendment or waiver on our website or in a current report on Form 8-K.

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EXECUTIVE COMPENSATION

Executive Compensation Overview

        Our executive compensation program has reflected our growth and development-oriented corporate culture. To date, the compensation of our Chief Executive Officer, who was our only executive officer in 2015 and who we refer to as a named executive officer, has primarily consisted of a combination of base salary, bonuses and long-term incentive compensation in the form of restricted stock awards. Our named executive officer, like all full-time employees, is eligible to participate in our health and welfare benefit plans. As we transition from a private company to a publicly traded company, we will evaluate our compensation values and philosophy and compensation plans and arrangements as circumstances require. At a minimum, we expect to review executive compensation annually with input from a compensation consultant. As part of this review process, we expect the board of directors and the compensation committee to apply our values and philosophy, while considering the compensation levels needed to ensure our executive compensation program remains competitive. We will also review whether we are meeting our retention objectives and the potential cost of replacing a key employee.

2015 Summary Compensation Table

        The following table presents information regarding the total compensation awarded to, earned by, and paid to our named executive officer for services rendered to us in all capacities for 2015.

Name and Principal Position
  Salary
($)
  Option
Awards
($)(1)
  Non-Equity
Incentive Plan
Compensation
($)(2)
  All Other
Compensation
($)(3)
  Total ($)  

Douglas A. Treco, Ph.D.,

  $ 360,000   $ 722,767   $ 68,000   $ 2,432   $ 1,153,199  

President and Chief Executive Officer

                               

(1)
Amount reflects the grant date fair value of the stock option award granted in 2015 to Dr. Treco in accordance with Financial Accounting Standards Board, Accounting Standards Codification Topic 718, or ASC 718. Such grant-date fair value does not take into account any estimated forfeitures related to service-vesting conditions. These amounts do not correspond to the actual value that may be recognized by the named executive officer upon vesting of the applicable award. Assumptions used in the calculation of these amounts are included in Note 2 to our audited financial statements included in this prospectus.

(2)
Amount in this column reflects a performance bonus paid to Dr. Treco in 2016 with respect to achievement of corporate performance goals for 2015.

(3)
Amount reflects 401(k) matching contribution and life insurance premiums.

Narrative to the Summary Compensation Table

    Base Salary

        For the year ended December 31, 2015, the annual base salary for Dr. Treco was $360,000. Effective January 1, 2016, the annual base salary for Dr. Treco was increased to $400,000.

    Annual Bonuses

        During the fiscal year ended December 31, 2015, Dr. Treco was eligible to receive a bonus of up to 30% of his base salary, based upon achievement of certain corporate performance goals. Based on our achievement of the relevant performance goals for 2015, our compensation committee determined that the bonuses would be paid at 77.5% of target, and Dr. Treco elected to receive a lesser amount, as reported in the "—2015 Summary Compensation Table." For 2016, Dr. Treco is eligible to receive a bonus of up to 40% of his base salary.

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    Equity Incentives

        During the fiscal year ended December 31, 2015, we granted an option to purchase 2,665,818 shares of our common stock to Dr. Treco, as shown in more detail in the "—Outstanding Equity Awards at Fiscal 2015 Year-End" table. This option award, together with any other option awards granted to Dr. Treco, accelerate in full upon a change in control.

Employment Arrangements and Severance Agreements with our Named Executive Officer

        We entered into an employment agreement with Dr. Treco in June 2008, which sets forth the terms and conditions of his employment with us, including base salary, target annual bonus opportunity and standard employee benefit plan participation. Pursuant to his employment agreement, in the event Dr. Treco's employment is terminated (a) by us (i) other than for "cause" (as defined in the employment agreement) or (ii) as a result of Dr. Treco's death or disability, or (b) by Dr. Treco for "good reason" (as defined in his employment agreement), subjection to his execution of a general release of claims, Dr. Treco shall be entitled to receive continuation of his base salary and benefits for a period of 12 months following his termination of employment, plus an amount equal to the bonus he received for the prior fiscal year (payable in monthly installments). In addition, any options and restricted stock shall vest in full and Dr. Treco shall have an additional three years within which to exercise such vested options.

        In connection with this offering, we intend to enter into new employment agreements, including severance arrangements, with our CEO, which will supersede and replace existing employment and severance arrangements.

Other Agreements

        We have also entered into an employee confidentiality, inventions, non-solicitation and non-competition agreements with our named executive officer. Under such agreement, Dr. Treco has agreed (1) not to compete with us during his employment and for a period of 12 months year after the termination of such employment, (2) not to solicit our employees during his employment and for a period of 12 months after the termination of such employment, (3) to protect our confidential and proprietary information and (4) to assign to us related intellectual property developed during the course of his employment.

Outstanding Equity Awards at 2015 Fiscal Year-End

        The following table sets forth information concerning outstanding equity awards held by our named executive officer as of December 31, 2015.

 
   
  Option Awards  
 
  Number of
Securities
Underlying
Unexercised
Options
(#)
Exercisable
 
Name
  Number of Securities
Underlying
Unexercised Options
(#)
Unexercisable(1)
  Option
Exercise
Price
($)
  Option Expiration Date  

Douglas A. Treco, Ph.D. 

        2,665,818   $ 0.41     12/10/2025  

(1)
Dr. Treco's stock option award vests over a four (4) year period in 48 equal monthly installments at the end of each month following December 10, 2015. The shares subject to the option award will be subject to single trigger acceleration in the event of a Sale of the Company (as defined in his employment agreement) as set forth in the applicable equity agreement.

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Compensation Risk Assessment

        We believe that although a portion of the compensation provided to our executive officers and other employees is performance-based, our executive compensation program does not encourage excessive or unnecessary risk taking. This is primarily due to the fact that our compensation programs are designed to encourage our executive officers and other employees to remain focused on both short-term and long-term strategic goals. As a result, we do not believe that our compensation programs are reasonably likely to have a material adverse effect on us.

Employee Benefit and Equity Compensation Plans

2016 Stock Option and Incentive Plan

        In                2016, our board of directors, upon the recommendation of the compensation committee of the board of directors, adopted our 2016 Stock Option and Incentive Plan, or the 2016 Plan, which was subsequently approved by our stockholders. The 2016 Plan will become effective immediately prior to the closing of this offering. The 2016 Plan will replace our 2010 Stock Option and Grant Plan, or the 2010 Plan, as our board of directors has determined not to make additional awards under the 2010 Plan following the closing of this offering. Our 2016 Plan provides flexibility to our compensation committee to use various equity-based incentive awards as compensation tools to motivate our workforce.

        We have initially reserved            shares of our common stock, or the Initial Limit, for the issuance of awards under the 2016 Plan, plus the shares of common stock remaining available for issuance under our 2010 Plan (as defined below). The 2016 Plan provides that the number of shares reserved and available for issuance under the plan will automatically increase each January 1, beginning on January 1, 2017, by        % of the outstanding number of shares of our common stock on the immediately preceding December 31, or such lesser number of shares as determined by our compensation committee, or the Annual Increase. This number is subject to adjustment in the event of a stock split, stock dividend or other change in our capitalization.

        The shares we issue under the 2016 Plan will be authorized but unissued shares or shares that we reacquire. The shares of common stock underlying any awards that are forfeited, cancelled, held back upon exercise or settlement of an award to satisfy the exercise price or tax withholding, reacquired by us prior to vesting, satisfied without any issuance of stock, expire or are otherwise terminated (other than by exercise) under the 2016 Plan and the 2010 Plan will be added back to the shares of common stock available for issuance under the 2016 Plan.

        Stock options and stock appreciation rights with respect to no more than            shares of stock may be granted to any one individual in any one calendar year. The maximum aggregate number of shares that may be issued in the form of incentive stock options shall not exceed the Initial Limit cumulatively increased on January 1, 2017 and on each January 1 thereafter by the lesser of the Annual Increase for such year or            shares of common stock.

        The 2016 Plan will be administered by our compensation committee. Our compensation committee has full power to select, from among the individuals eligible for awards, the individuals to whom awards will be granted, to make any combination of awards to participants, and to determine the specific terms and conditions of each award, subject to the provisions of the 2016 Plan. Persons eligible to participate in the 2016 Plan will be those full or part-time officers, employees, non-employee directors and other key persons (including consultants) as selected from time to time by our compensation committee in its discretion.

        The 2016 Plan permits the granting of both options to purchase common stock intended to qualify as incentive stock options under Section 422 of the Internal Revenue Code, or the Code, and options that do not so qualify. The option exercise price of each option will be determined by our

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compensation committee but may not be less than 100% of the fair market value of our common stock on the date of grant. The term of each option will be fixed by our compensation committee and may not exceed 10 years from the date of grant. Our compensation committee will determine at what time or times each option may be exercised.

        Our compensation committee may award stock appreciation rights subject to such conditions and restrictions as it may determine. Stock appreciation rights entitle the recipient to shares of common stock, or cash, equal to the value of the appreciation in our stock price over the exercise price. The exercise price of each stock appreciation right may not be less than 100% of the fair market value of the common stock on the date of grant.

        Our compensation committee may award restricted shares of common stock and restricted stock units to participants subject to such conditions and restrictions as it may determine. These conditions and restrictions may include the achievement of certain performance goals and/or continued employment with us through a specified vesting period. Our compensation committee may also grant shares of common stock that are free from any restrictions under the 2016 Plan. Unrestricted stock may be granted to participants in recognition of past services or other valid consideration and may be issued in lieu of cash compensation due to such participant. Our compensation committee may grant cash bonuses under the 2016 Plan to participants, subject to the achievement of certain performance goals.

        Our compensation committee may grant awards of restricted stock, restricted stock units or stock- or cash-based awards under the 2016 Plan that are intended to qualify as "performance-based compensation" under Section 162(m) of the Code. Those awards would only vest or become payable upon the attainment of performance goals that are established by our compensation committee and related to one or more performance criteria. The performance criteria that would be used with respect to any such awards include: achievement of specified research and development, publication, clinical and/or regulatory milestones, earnings before interest, taxes, depreciation and amortization, net income (loss) (either before or after interest, taxes, depreciation and/or amortization), changes in the market price of our common stock, economic value added, funds from operations or similar measures, sales or revenue, acquisitions or strategic transactions, operating income (loss), cash flow (including, but not limited to, operating cash flow and free cash flow), return on capital, assets, equity, or investment, stockholder returns, return on sales, gross or net profit levels, productivity, expense, margins, operating efficiency, customer satisfaction, working capital, earnings (loss) per share of stock, sales or market shares and number of customers, any of which may be measured either in absolute terms or as compared to any incremental increase or as compared to results of a peer group. From and after the time that we become subject to Section 162(m) of the Code, the maximum award that is intended to qualify as "performance-based compensation" under Section 162(m) of the Code that may be made to any one employee during any one calendar year is            shares of common stock with respect to a stock-based award and $            with respect to a cash-based award.

        The 2016 Plan provides that in the case of, and subject to, the consummation of a "sale event" as defined in the 2016 Plan, all outstanding awards may be assumed, substituted or otherwise continued by the successor entity. To the extent that the successor entity does not assume, substitute or otherwise continue such awards, then (i) all stock options and stock appreciation rights will automatically become fully exercisable and the restrictions and conditions on all other awards with time-based conditions will automatically be deemed waived, and awards with conditions and restrictions relating to the attainment of performance goals may become vested and non-forfeitable in connection with a sale event in the compensation committee's discretion and (ii) upon the effectiveness of the sale event, the 2016 Plan and all awards will automatically terminate. In the event of such termination, (i) individuals holding options and stock appreciation rights will be permitted to exercise such options and stock appreciation rights (to the extent exercisable) prior to the sale event; or (ii) we may make or provide for a cash payment to participants holding options and stock appreciation rights equal to the difference between

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the per share cash consideration payable to stockholders in the sale event and the exercise price of the options or stock appreciation rights (to the extent then exercisable).

        Our board of directors may amend or discontinue the 2016 Plan and our compensation committee may amend the exercise price of options and amend or cancel outstanding awards for purposes of satisfying changes in law or any other lawful purpose but no such action may adversely affect rights under an award without the holder's consent. Certain amendments to the 2016 Plan require the approval of our stockholders. No awards may be granted under the 2016 Plan after the date that is 10 years from the date of stockholder approval. No awards under the 2016 Plan have been made prior to the date of this prospectus.

2010 Stock Option and Grant Plan

        The 2010 Stock Option and Grant Plan, or the 2010 Plan, was approved by our board of directors and our stockholders on February 12, 2010. Under the 2010 Plan, 17,469,249 shares of common stock have been reserved for issuance in the form of incentive stock options, non-qualified stock options, restricted stock, unrestricted stock, restricted stock units or any combination of the foregoing. The shares issuable pursuant to awards granted under the 2010 Plan are authorized but unissued shares.

        The 2010 Plan is administered by our board or at the discretion of the board, a committee of the board comprised of not less than two (2) directors, which has full power to select the individuals to whom awards will be granted and to determine the specific terms and conditions of each award, subject to the provisions of the 2010 Plan.

        The option exercise price of each option granted under the 2010 Plan is determined by our board and may not be less than the fair market value of a share of common stock on the date of grant. The term of each option is fixed by the board and may not exceed 10 years from the date of grant. The board determines at what time or times each option may be exercised when granting the option.

        The 2010 Plan provides that, upon the consummation of a sale event, unless provision is made in connection with the sale event for the assumption or continuation of the awards by the successor entity or substitution of the awards with new awards of the successor entity, with appropriate adjustment, the 2010 Plan and all outstanding and unexercised options issued thereunder will terminate upon the effective time of the sale event. We may make or provide for cash payment to holders of options equal to the difference between (i) the per share cash consideration in the sale event multiplied by the number of shares subject to outstanding options being cancelled, and (ii) the aggregate exercise price to the holders of all vested and exercisable options.

        Our board may amend the 2010 Plan but no such action may adversely affect the rights of an award holder without such holder's consent. Approval by our stockholders of amendments to the 2010 Plan must be obtained if required by law.

        As of August 16, 2016, options to purchase 14,783,897 shares of common stock were outstanding under the 2010 Plan. Our board has determined not to make any further awards under the 2010 Plan following the completion of this offering. Following the consummation of our initial public offering, we expect to make future awards under the 2016 Plan.

Employee Stock Purchase Plan

        In                , 2016 our board of directors adopted and our stockholders approved our 2016 Employee Stock Purchase Plan, or the ESPP. The ESPP authorizes the issuance of up to a total of            shares of common stock to participating employees. The ESPP provides that the number of shares reserved and available for issuance under the ESPP shall be cumulatively increased each January 1, beginning on January 1, 2017, by the lesser of (i)              percent of the outstanding number of shares of our common stock on the immediately preceding December 31,            shares of common

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stock or (ii) such lesser number of shares as determined by our compensation committee. The number of shares reserved and available for issuance under the ESPP is subject to adjustment in the event of a stock split, stock dividend or other change in our capitalization.

        All employees who we have employed for at least            months and whose customary employment is for more than            hours a week are eligible to participate in the ESPP. Any employee who owns five percent or more of the voting power or value of our shares of common stock is not eligible to purchase shares under the ESPP.

        We may make one or more offerings each year to our employees to purchase shares under the ESPP. Each eligible employee may elect to participate in any offering by submitting an enrollment form at least 15 business days before the relevant offering date.

        Each employee who is a participant in the ESPP may purchase shares by authorizing payroll deductions of up to             percent of his or her base compensation during an offering period. Unless the participating employee has previously withdrawn from the offering, his or her accumulated payroll deductions will be used to purchase shares of common stock on the last business day of the offering period at a price equal to 85 percent of the fair market value of the common stock on the first business day or the last business day of the offering period, whichever is lower, provided that no more than            shares of common stock may be purchased by any one employee during each offering period. Under applicable tax rules, an employee may purchase no more than $25,000 worth of common stock, valued at the start of the purchase period, under the ESPP in any calendar year.

        The accumulated payroll deductions of any employee who is not a participant on the last day of an offering period will be refunded. An employee's rights under the ESPP terminate upon voluntary withdrawal from the plan or when the employee ceases employment with us for any reason.

        The ESPP may be terminated or amended by our board of directors at any time. An amendment that increases the number of shares of common stock that are authorized under the ESPP and certain other amendments require the approval of our stockholders.

Senior Executive Cash Incentive Bonus Plan

        In                , 2016 our board of directors adopted the Senior Executive Cash Incentive Bonus Plan, or the Bonus Plan. The Bonus Plan provides for cash bonus payments based upon the attainment of performance targets established by our compensation committee. The payment targets will be related to financial and operational measures or objectives with respect to our company, or corporate performance goals, as well as individual performance objectives.

        Our compensation committee may select corporate performance goals from among the following: achievement of specified research and development, publication, clinical and/or regulatory milestones, adjusted billings, earnings before interest, taxes, depreciation and amortization, net income (loss) (either before or after interest, taxes, depreciation and/or amortization), changes in the market price of our common stock, economic value-added, funds from operations or similar measure, sales or revenue, acquisitions or strategic transactions, operating income (loss), cash flow (including, but not limited to, operating cash flow and free cash flow), return on capital, assets, equity, or investment, stockholder returns, return on sales, gross or net profit levels, productivity, expense, margins, operating efficiency, customer satisfaction, working capital, earnings (loss) per share of stock, sales or market shares and number of customers, any of which may be measured in absolute terms, as compared to any incremental increase, in terms of growth, or as compared to results of a peer group.

        Each executive officer who is selected to participate in the Bonus Plan will have a target bonus opportunity set for each performance period. The bonus formulas will be adopted in each performance period by the compensation committee and communicated to each executive. The corporate performance goals will be measured at the end of each performance period after our financial reports

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have been published or such other appropriate time as the compensation committee determines. If the corporate performance goals and individual performance objectives are met, payments will be made as soon as practicable following the end of each performance period. Subject to the rights contained in any agreement between the executive officer and us, an executive officer must be employed by us on the bonus payment date to be eligible to receive a bonus payment. The Bonus Plan also permits the compensation committee to approve additional bonuses to executive officers in its sole discretion and provides the compensation committee with discretion to adjust the size of the award as it deems appropriate to account for unforeseen factors beyond management's control that affected corporate performance.

401(k) Plan

        We maintain a tax-qualified retirement plan that provides eligible U.S. employees with an opportunity to save for retirement on a tax-advantaged basis. All participants' interests in their contributions are 100% vested when contributed. Pre-tax contributions are allocated to each participant's individual account and are then invested in selected investment alternatives according to the participants' directions. The retirement plan is intended to qualify under Section 401(a) of the Code.

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DIRECTOR COMPENSATION

        We did not pay any compensation, make any equity awards or non-equity awards to or pay any other compensation to any of the non-employee members of our board of directors in 2015. We reimburse non-employee members of our board of directors for reasonable travel expenses. During the fiscal year ended December 31, 2015, Dr. Treco, our Chief Executive Officer, was a member of our board of directors, as well as an employee, and thus received no additional compensation for his service as a director. Dr. Treco's compensation for service as an employee is presented in the section titled "Executive Compensation—2015 Summary Compensation Table."

Non-Employee Director Compensation Policy

        Our board of directors expects to adopt a non-employee director compensation policy, effective upon effectiveness of the registration statement of which this prospectus forms a part, that is designed to enable us to attract and retain, on a long-term basis, highly qualified non-employee directors. Under the policy, each director who is not an employee will be paid cash compensation from and after the completion of this offering, as set forth below:

 
  Member
Annual
Fee
  Chairman
Additional
Annual
Fee
 

Board of Directors

  $        

Audit Committee

           

Compensation Committee

           

Nominating and Corporate Governance Committee

           

        In addition, each non-employee director serving on our board of directors upon completion of this offering and each non-employee director elected or appointed to our board of directors following the completing of this offering will be granted                on the date of such director's election or appointment to the board of directors, which will vest in the following manner, subject to continued service through such vesting date(s):                . On the date of each annual meeting of stockholders of our company, each non-employee director will be granted                 , which will vest in the following manner, subject to continued service as a director through such vesting date(s) :                .

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CERTAIN RELATIONSHIPS AND RELATED PARTY TRANSACTIONS

        Other than the compensation agreements and other arrangements described under "Executive Compensation" and "Director Compensation" in this prospectus and the transactions described below, since January 1, 2013, there has not been and there is not currently proposed, any transaction or series of similar transactions to which we were, or will be, a party in which the amount involved exceeded, or will exceed, $120,000 and in which any director, executive officer, holder of five percent or more of any class of our capital stock or any member of the immediate family of, or entities affiliated with, any of the foregoing persons, had, or will have, a direct or indirect material interest.

Private Placements of Securities

Convertible Note and Warrant Financing

        In April 2015, we entered into a convertible note purchase agreement, pursuant to which we issued and sold to investors an aggregate principal amount of $5,000,000 of convertible promissory notes, or the 2015 notes, and warrants to purchase an aggregate of 1,559,070 shares of our common stock at an exercise price of $0.01 per share. All of the convertible promissory notes in aggregate principal amount of $5,000,000, together with accrued interest of $108,493.15, were used as consideration by the investors to purchase our Series B-1 convertible preferred stock in July 2015. The following table summarizes the issuance of such warrants to related persons:

Stockholder
  Principal
Amount of
Notes at
Closing
  Principal
Amount and
Accrued
Interested at
Termination
  Warrants to
Purchase
Shares of
Common Stock
 

Morgenthaler Venture Partners IX L.P. (1)

  $ 1,414,744   $ 1,445,442.01     441,137  

New Enterprise Associates 13, L.P. (2)

  $ 1,810,735   $ 1,850,025.47     564,612  

Novartis International Pharmaceutical Investment Ltd. (3)

  $ 1,412,374   $ 1,443,020.58     440,398  

(1)
Jason Lettmann, a partner of Morgenthaler Ventures, which is an affiliate of Morgenthaler Venture Partners IX L.P., is a member of our board of directors.

(2)
Edward T. Mathers, a partner at New Enterprise Associates, Inc., which is an affiliate of New Enterprise Associates 13, L.P., is a member of our board of directors.

(3)
Shares of our capital stock that were issued upon conversion of the convertible promissory notes in July 2015 were issued to Novartis Bioventures Ltd., an affiliate of Novartis International Pharmaceutical Investment Ltd. Markus Goebel, M.D., Ph.D., a member of our board of directors, is an employee of an affiliate of Novartis International Pharmaceutical Investment Ltd. and Novartis Bioventures, Ltd.

Series B Convertible Preferred Stock Financing

        In July 2015, we sold an aggregate of 31,564,630 shares of our Series B-1 convertible preferred stock at a purchase price of $0.92667 per share. Certain investors (or such investor's affiliate) holding the 2015 notes have used the consideration received upon termination of the 2015 notes as a portion of the purchase price of the Series B-1 convertible preferred stock. In June 2016, we sold an aggregate of 29,362,452 shares of our Series B-2 convertible preferred stock at a purchase price of $0.99617 per

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share. The following table summarizes purchases of our Series B-1 and Series B-2 convertible preferred stock by related persons:

Stockholder
  Shares of
Series B-1
Convertible
Preferred Stock
  Principal and
Accrued
Interest under
the 2015 Notes
  Total
Purchase
Price
  Shares of
Series B-2
Convertible
Preferred Stock
  Total
Purchase
Price
 

Entities affiliated with Lightstone Ventures (1)(2)

    4,316,531   $   $ 3,999,999.79     4,015,378   $ 3,999,999.11  

Morgenthaler Venture Partners IX L.P. (3)

    3,664,071   $ 1,445,442.01   $ 3,395,384.68     3,408,439   $ 3,395,384.68  

New Enterprise Associates 13, L.P. (4)

    4,689,657   $ 1,850,025.47   $ 4,345,764.46     4,362,472   $ 4,345,763.74  

Novartis Bioventures Ltd (5)

    3,657,932   $ 1,443,020.58   $ 3,389,695.85     3,402,729   $ 3,389,696.55  

Novo A/S (6)

    6,474,796   $   $ 5,999,999.21     6,023,068   $ 5,999,999.65  

RA Capital Healthcare Fund, L.P. (7)

    3,552,506   $   $ 3,292,000.74     3,304,656   $ 3,291,999.17  

(1)
Jason Lettmann, a partner of Lightstone Ventures, is a member of our board of directors.

(2)
Consists of: (i) 3,798,914 shares of Series B-1 convertible preferred stock and 3,533,875 shares of Series B-2 convertible preferred stock, all purchased and received by Lightstone Ventures, L.P. and (ii) 517,617 shares of Series B-1 convertible preferred stock and 481,503 shares of Series B-2 convertible preferred stock, all purchased and received by Lightstone Ventures (A), L.P.

(3)
Jason Lettmann, a partner of Morgenthaler Ventures, which is an affiliate of Morgenthaler Venture Partners IX L.P., is a member of our board of directors.

(4)
Edward T. Mathers, a partner at New Enterprise Associates, Inc., which is an affiliate of New Enterprise Associates 13, L.P., is a member of our board of directors.

(5)
All shares issued upon conversion of Novartis International Pharmaceutical Investment Ltd.'s convertible notes were issued to and are included under Novartis Bioventures Ltd. Markus Goebel, M.D., Ph.D., a member of our board of directors, is an employee of an affiliate of Novartis International Pharmaceutical Investment Ltd. and Novartis Bioventures Ltd., is a member of our board of directors.

(6)
Peter Tuxen Bisgaard, a partner at Novo Ventures (US) Inc., which provides consultancy services to Novo A/S, is a member of our board of directors.

(7)
Rajeev Shah, a managing director and portfolio manager at RA Capital Management, which is an affiliate of RA Capital Healthcare Fund, L.P., is a member of our board of directors.

Agreements with Stockholders

        In connection with our Series B preferred stock financing, we entered into investors' rights, voting and right of first refusal and co-sale agreements containing registration rights, information rights, voting rights and rights of first refusal, among other things, with certain holders of our preferred stock and certain holders of our common stock. These stockholder agreements will terminate upon the closing of this offering, except for the registration rights granted under our investors' rights agreement, as more fully described in "Description of Capital Stock—Registration Rights."

Indemnification Agreements

        In connection with this offering, we intend to enter into agreements to indemnify our directors and executive officers. These agreements will, among other things, require us to indemnify these individuals for certain expenses (including attorneys' fees), judgments, fines and settlement amounts reasonably incurred by such person in any action or proceeding, including any action by or in our right, on account

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of any services undertaken by such person on behalf of our company or that person's status as a member of our board of directors to the maximum extent allowed under Delaware law.

Policies for Approval of Related Party Transactions

        Our board of directors reviews and approves transactions with directors, officers and holders of five percent or more of our voting securities and their affiliates, each a related party. Prior to this offering, the material facts as to the related party's relationship or interest in the transaction are disclosed to our board of directors prior to their consideration of such transaction, and the transaction is not considered approved by our board of directors unless a majority of the directors who are not interested in the transaction approve the transaction. Further, when stockholders are entitled to vote on a transaction with a related party, the material facts of the related party's relationship or interest in the transaction are disclosed to the stockholders, who must approve the transaction in good faith.

        In connection with this offering, we expect to adopt a written related party transactions policy that such transactions must be approved by our audit committee. This policy will become effective on the date on which the registration statement of which this prospectus is part is declared effective by the SEC.

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PRINCIPAL STOCKHOLDERS

        The following table sets forth certain information known to us regarding beneficial ownership of our capital stock as of August 16, 2016, as adjusted to reflect the sale of common stock offered by us in this offering, for:

        To the extent that the underwriters sell more than                shares in this offering, the underwriters have the option to purchase up to an additional                shares at the initial public offering price less the underwriting discount.

        Beneficial ownership is determined in accordance with the rules of the SEC and generally includes voting or investment power with respect to securities. Under those rules, beneficial ownership includes any shares as to which the individual or entity has sole or shared voting power or investment power, and includes securities that the individual or entity has the right to acquire, such as through the exercise of stock options, within 60 days of August 16, 2016. Except as noted by footnote, and subject to community property laws where applicable, we believe, based on the information provided to us, that the persons and entities named in the table below have sole voting and investment power with respect to all common stock shown as beneficially owned by them.

        The percentage of beneficial ownership prior to this offering in the table below is based on                   shares of common stock deemed to be outstanding as of August 16, 2016, assuming (i) the conversion of all outstanding shares of our preferred stock upon the closing of this offering into an aggregate of 95,367,647 shares of common stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into                shares of common stock, assuming a conversion price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, in each case upon the closing of this offering, and the percentage of beneficial ownership at this offering in the table below is based on                shares of common stock assumed to be outstanding after the closing of the offering. The information in the table below assumes no exercise of the underwriters' option to purchase additional shares.

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        Except as otherwise noted below, the address for persons listed in the table is c/o Ra Pharmaceuticals, Inc., 87 Cambridge Park Drive, Cambridge, MA 02140.

 
   
  Percentage of Shares
Beneficially Owned
 
Name and Address of Beneficial Owner
  Number of Shares
Beneficially Owned
Prior to Offering
  Before Offering   After Offering  

5% Stockholders:

                   

Entities associated with New Enterprise Associated 13, L.P. Associates, Inc. (1)

    22,089,291              

Entities associated with Morgenthaler Venture Partners IX, L.P. (2)

    17,378,563              

Novartis Bioventures Ltd. (3)

    17,229,648              

Novo A/S (4)

    12,497,864              

Entities associated with Lightstone Ventures, L.P. (5)

    8,331,909              

Entities associated with RA Capital Management, LLC (6)

    8,331,909              

Named Executive Officer, Other Executive Officers and Directors:

                   

Douglas A. Treco, Ph.D. (7)

    1,953,861              

David C. Lubner

                 

Simon Read, Ph.D. 

                 

Ramin Farzaneh-Far, M.D. 

                 

Peter Tuxen Bisgaard

                 

Markus Goebel, M.D., Ph.D. 

                 

Robert Heft, Ph.D. 

                 

Jason Lettmann (2) (5)

    25,710,472              

Edward T. Mathers (8)

                 

Timothy R. Pearson

                 

Rajeev Shah

                 

All executive officers and directors as a group (11 persons) (2)(5)(7)

    27,664,333              

*
Less than 1%

(1)
Consists of (i) 564,612 shares of common stock underlying warrants exercisable within 60 days of August 16, 2016 held by New Enterprise Associates 13, L.P., or NEA 13; (ii) 24,945 shares of common stock issuable upon conversion of Series A Preferred Stock held by NEA Ventures 2009, L.P., or NEA Ventures 2009; (iii) 12,447,605 shares of common stock issuable upon conversion of Series A Preferred Stock held by NEA 13; (iv) 4,689,657 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by NEA 13; and (v) 4,362,472 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by NEA 13. The shares directly held by NEA 13 are indirectly held by NEA Partners 13, L.P., or NEA Partners 13, the sole general partner of NEA 13. NEA 13 GP, LTD, or NEA 13 LTD is the sole general partner of NEA Partners 13. The individual Directors, or the Directors, of NEA 13 LTD are M. James Barrett, Peter J. Barris, Forest Baskett, Patrick J. Kerins, Krishna Kolluri, David M. Mott, Scott D. Sandell, Ravi Viswanathan and Harry R. Weller. The Directors share voting and dispositive power with regard to shares held directly by NEA 13. The shares directly held by NEA Ventures 2009 are indirectly held by Karen P. Welsh, the general partner of NEA Ventures 2009. Karen P. Welsh holds voting and dispositive power over the shares held by NEA Ventures 2009. The address of NEA 13 and NEA Ventures 2009 is 1954 Greenspring Drive, Suite 600, Timonium, MD 21903.

(2)
Consists of (i) 120,000 shares of common stock by Morgenthaler Venture Partners IX, L.P. (ii) 441,137 shares of common stock underlying warrants exercisable within 60 days of August 16, 2016 held by Morgenthaler Venture Partners IX, L.P.; (iii) 9,744,916 shares of common stock issuable upon conversion of Series A Preferred Stock held by Morgenthaler Venture Partners IX, L.P.; (iv) 3,664,071 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by Morgenthaler Venture Partners IX, L.P and (v) 3,408,439 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by Morgenthaler Venture Partners IX, L.P. Morgenthaler Management Partners IX, LLC, or Morgenthaler Advisors IX, LLC, the general partner of Morgenthaler Venture Partners IX, L.P., may be deemed to have sole power to vote these shares, and Robert C. Bellas, Jr., Ralph E. Christoffersen, Jason Lettmann, Gary R. Little,

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    Rebecca Lynn, Gary J. Morgenthaler, Robert D. Pavey and Henry Plain, the managing members of Morgenthaler Advisors IX, LLC, may be deemed to have shared power to vote these shares. Each of these individuals disclaims beneficial ownership of such shares except to the extent of such individual's pecuniary interest therein. The address of Morgenthaler Venture Partners IX, L.P. is 3200 Alpine Road Portola Valley, CA 94028.

(3)
Consists of (i) 440,398 shares of common stock underlying warrants exercisable within 60 days of August 16, 2016 held by Novartis International Pharmaceutical Investment Ltd., an affiliate of Novartis Bioventures Ltd.; (ii) 9,728,589 shares of common stock issuable upon conversion of Series A Preferred Stock held by Novartis Bioventures Ltd. (iii) 3,657,932 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by Novartis Bioventures Ltd.; and (iv) 3,402,729 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by Novartis Bioventures Ltd. The board of directors of Novartis Bioventures Ltd. has sole voting and investment control and power over such securities. None of the members of its board of directors has individual voting or investment power with respect to such securities and each disclaims beneficial ownership of such securities. Dr. Markus Goebel, a member of our board of directors, is also an employee of a corporation that is affiliated with Novartis Bioventures Ltd. Dr. Goebel disclaims beneficial ownership of the securities held by Novartis Bioventures Ltd., except to the extent of his pecuniary interest arising as a result of his employment by such affiliate of Novartis Bioventures Ltd. Novartis Bioventures Ltd. is an indirectly owned subsidiary of Novartis AG. The address for Novartis Bioventures Ltd is P.O. Box HM 2899, Hamilton HM LX Bermuda.

(4)
Consists of (i) 6,474,796 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by Novo A/S and (ii) 6,023,068 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by Novo A/S. The board of directors of Novo consists of Sten Scheibye, Göran Ando, Jeppe Christiansen, Steen Riisgaard and Per Wold-Olsen, who have shared investment and voting control with respect to the shares held by Novo and may exercise such control only with the support of a majority of the members of the Novo board of directors. No individual member of the Novo board of directors is deemed to hold any beneficial ownership or reportable pecuniary interest in the shares held by Novo. Peter Tuxen Bisgaard, one of our directors, is employed as a partner of Novo Ventures (US) Inc., a consultant to Novo, and is not deemed to beneficially own the shares held by Novo. The address for Novo is Tuborg Havnevej 19, 2900 Hellerup, Denmark.

(5)
Consists of (i) 3,798,914 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by Lightstone Ventures, L.P.; (ii) 517,617 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by Lightstone Ventures (A), L.P.; (iii) 3,533,875 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by Lightstone Ventures, L.P.; and (iv) 481,503 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by Lightstone Ventures (A), L.P. LSV Associates, LLC, or LSV GP, is the General Partner of Lightstone Ventures, L.P. and Lightstone Ventures (A), L.P. (collectively, "LSV") and exercises voting and dispositive authority over the shares held by LSV. Voting and dispositive decisions of LSV GP are made collectively by Michael A. Carusi, Jean George, Ralph E. Christoffersen, Henry A. Plain, Jr. and Jason Lettmann, a member of our board of directors (collectively, the "LSV Managing Directors"). LSV GP and the LSV Managing Directors disclaim beneficial ownership of the shares held by LSV except to the extent of their pecuniary interest therein. The address for the entities is 500 Boylston Street, Suite 1380, Boston, Massachusetts 02116.

(6)
Consists of (i) 3,552,506 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by RA Capital Healthcare Fund, L.P.; (ii) 764,025 shares of common stock issuable upon conversion of Series B-1 Preferred Stock held by Blackwell Partners LLC—Series A; (iii) 3,304,656 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by RA Capital Healthcare Fund, L.P. and (iv) 710,722 shares of common stock issuable upon conversion of Series B-2 Preferred Stock held by Blackwell Partners LLC—Series A. Peter Kolchinsky, as member of RA Capital Management, LLC, which is the general partner of RA Capital Healthcare Fund, L.P. and the investment advisor of Blackwell Partners, LLC—Series A, has voting and investment power over the shares held by Blackwell Partners, LLC—Series A and RA Capital Healthcare Fund, L.P. RA Capital Management, LLC and Mr. Kolchinsky may be deemed to have shared voting and dispositive power over the shares directly owned by RA Capital Healthcare Fund, L.P. and Blackwell Partners, LLC—Series A. Mr. Kolchinsky disclaims beneficial ownership over all shares held by Blackwell Partners, LLC—Series A and RA Capital Healthcare Fund, LP, except to the extent of any pecuniary interest in such shares. The notice address for RA Capital Healthcare Fund, L.P. is 20 Park Plaza, Suite 1200, Boston, MA 02116. The notice address for Blackwell Partners, LLC—Series A is 280 S. Mangum Street, Suite 210, Durham, NC 27701.

(7)
Consists of (i) 1,430,062 shares of common stock; and (ii) 523,799 shares of common stock underlying options exercisable within 60 days of August 16, 2016.

(8)
Mr. Mathers is a partner of New Enterprise Associates, Inc. Mr. Mathers does not have voting or dispositive power over any of the shares directly held by NEA 13 or NEA Ventures 2009 referenced in footnote (1) above. Mr. Mathers's business address is 5425 Wisconsin Ave, Suite 800, Chevy Chase, MD 20815.

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DESCRIPTION OF CAPITAL STOCK

         The following descriptions are summaries of the material terms of our amended and restated certificate of incorporation, which will be effective upon the closing of this offering and amended and restated bylaws, which will be effective upon the effectiveness of the registration statement of which this prospectus is a part. The descriptions of the common stock and preferred stock give effect to changes to our capital structure that will occur immediately prior to the completion of this offering. We refer in this section to our amended and restated certificate of incorporation as our certificate of incorporation, and we refer to our amended and restated bylaws as our bylaws.

General

        Upon completion of this offering, our authorized capital stock will consist of                shares of common stock, par value $0.001 per share, and                shares of preferred stock, par value $0.001 per share, all of which shares of preferred stock will be undesignated.

        As of August 16, 2016, 3,883,492 shares of our common stock, 34,440,565 shares of Series A preferred stock, 31,564,630 shares of Series B-1 preferred stock and 29,362,452 shares of Series B-2 preferred stock were outstanding and held by 43 stockholders of record. This amount does not take into account (i) the conversion of all outstanding shares of our preferred stock into common stock or (ii) the net exercise, in accordance with their terms, of outstanding warrants to purchase 1,559,444 shares of common stock into                 shares of common stock, at an assumed exercise price of $            per share, which is the midpoint of the price range set forth on the cover of this prospectus, which in each case will occur upon the closing of this offering.

Common Stock

        The holders of our common stock are entitled to one vote for each share held on all matters submitted to a vote of the stockholders. The holders of our common stock do not have any cumulative voting rights. Holders of our common stock are entitled to receive ratably any dividends declared by our board of directors out of funds legally available for that purpose, subject to any preferential dividend rights of any outstanding preferred stock. Our common stock has no preemptive rights, conversion rights or other subscription rights or redemption or sinking fund provisions.

        In the event of our liquidation, dissolution or winding up, holders of our common stock will be entitled to share ratably in all assets remaining after payment of all debts and other liabilities and any liquidation preference of any outstanding preferred stock. The shares to be issued by us in this offering will be, when issued and paid for, validly issued, fully paid and non-assessable.

Preferred Stock

        Upon the completion of this offering, all outstanding shares of our preferred stock will be converted into shares of our common stock. Upon the consummation of this offering, our board of directors will have the authority, without further action by our stockholders, to issue up to                shares of preferred stock in one or more series and to fix the rights, preferences, privileges and restrictions thereof. These rights, preferences and privileges could include dividend rights, conversion rights, voting rights, terms of redemption, liquidation preferences, sinking fund terms and the number of shares constituting, or the designation of, such series, any or all of which may be greater than the rights of common stock. The issuance of our preferred stock could adversely affect the voting power of holders of common stock and the likelihood that such holders will receive dividend payments and payments upon our liquidation. In addition, the issuance of preferred stock could have the effect of delaying, deferring or preventing a change in control of our company or other corporate action. Immediately after consummation of this offering, no shares of preferred stock will be outstanding, and we have no present plan to issue any shares of preferred stock.

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Registration Rights

        Upon the completion of this offering, the holders of                shares of our common stock, including those issuable upon (i) the conversion of preferred stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants, will be entitled to rights with respect to the registration of these securities under the Securities Act. These rights are provided under the terms of an investors' rights agreement between us, holders of our preferred stock. The investors' rights agreement includes demand registration rights, short-form registration rights and piggyback registration rights. All fees, costs and expenses of underwritten registrations under this agreement will be borne by us and all selling expenses, including underwriting discounts and selling commissions, will be borne by the holders of the shares being registered.

Demand Registration Rights

        Beginning 180 days after the effective date of this registration statement, the holders of                shares of our common stock, including those issuable upon (i) the conversion of preferred stock and (ii) the net exercise, in accordance with their terms, of outstanding warrants, in each case upon closing of this offering, are entitled to demand registration rights. Under the terms of the investor rights agreement, we will be required, upon the written request of majority in interest of these holders of these securities that would result in an aggregate offering price of at least $10.0 million, to file a registration statement and use commercially reasonable efforts to effect the registration of all or a portion of these shares for public resale. We are required to effect only three registrations pursuant to this provision of the investor rights agreement.

Short-Form Registration Rights

        Pursuant to the investor rights agreement, if we are eligible to file a registration statement on Form S-3, upon the written request of majority in interest of these holders to sell registrable securities at an aggregate price of at least $1.0 million, we will be required to use commercially reasonable efforts to effect a registration of such shares. We are required to effect only two registrations in any twelve month period pursuant to this provision of the investor rights agreement. The right to have such shares registered on Form S-3 is further subject to other specified conditions and limitations.

Piggyback Registration Rights

        Pursuant to the investor rights agreement, if we register any of our securities either for our own account or for the account of other security holders, the holders of these shares are entitled to include their shares in the registration. Subject to certain exceptions contained in the investor rights agreement, we and the underwriters may limit the number of shares included in the underwritten offering to the number of shares which we and the underwriters determine in our sole discretion will not jeopardize the success of the offering.

Indemnification

        Our investor rights agreement contains customary cross-indemnification provisions, under which we are obligated to indemnify holders of registrable securities in the event of material misstatements or omissions in the registration statement attributable to us, and they are obligated to indemnify us for material misstatements or omissions attributable to them.

Expiration of Registration Rights

        The demand registration rights and short form registration rights granted under the investor rights agreement will terminate on the fifth anniversary of the completion of this offering.

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Anti-Takeover Effects of our Certificate of Incorporation and Bylaws and Delaware Law

        Our certificate of incorporation and bylaws include a number of provisions that may have the effect of delaying, deferring or preventing another party from acquiring control of us and encouraging persons considering unsolicited tender offers or other unilateral takeover proposals to negotiate with our board of directors rather than pursue non-negotiated takeover attempts. These provisions include the items described below.

Board Composition and Filling Vacancies

        Our certificate of incorporation provides for the division of our board of directors into three classes serving staggered three-year terms, with one class being elected each year. Our certificate of incorporation also provides that directors may be removed only for cause and then only by the affirmative vote of the holders of 75% or more of the shares then entitled to vote at an election of directors. Furthermore, any vacancy on our board of directors, however occurring, including a vacancy resulting from an increase in the size of our board, may only be filled by the affirmative vote of a majority of our directors then in office even if less than a quorum. The classification of directors, together with the limitations on removal of directors and treatment of vacancies, has the effect of making it more difficult for stockholders to change the composition of our board of directors.

No Written Consent of Stockholders

        Our certificate of incorporation provides that all stockholder actions are required to be taken by a vote of the stockholders at an annual or special meeting, and that stockholders may not take any action by written consent in lieu of a meeting. This limit may lengthen the amount of time required to take stockholder actions and would prevent the amendment of our bylaws or removal of directors by our stockholders without holding a meeting of stockholders.

Meetings of Stockholders

        Our certificate of incorporation and bylaws provide that only a majority of the members of our board of directors then in office may call special meetings of stockholders and only those matters set forth in the notice of the special meeting may be considered or acted upon at a special meeting of stockholders. Our bylaws limit the business that may be conducted at an annual meeting of stockholders to those matters properly brought before the meeting.

Advance Notice Requirements

        Our bylaws establish advance notice procedures with regard to stockholder proposals relating to the nomination of candidates for election as directors or new business to be brought before meetings of our stockholders. These procedures provide that notice of stockholder proposals must be timely given in writing to our corporate secretary prior to the meeting at which the action is to be taken. Generally, to be timely, notice must be received at our principal executive offices not less than 90 days nor more than 120 days prior to the first anniversary date of the annual meeting for the preceding year. Our bylaws specify the requirements as to form and content of all stockholders' notices. These requirements may preclude stockholders from bringing matters before the stockholders at an annual or special meeting.

Amendment to Certificate of Incorporation and Bylaws

        Any amendment of our certificate of incorporation must first be approved by a majority of our board of directors, and if required by law or our certificate of incorporation, must thereafter be approved by a majority of the outstanding shares entitled to vote on the amendment and a majority of the outstanding shares of each class entitled to vote thereon as a class, except that the amendment of

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the provisions relating to stockholder action, board composition, limitation of liability and the amendment of our bylaws and certificate of incorporation must be approved by not less than 75% of the outstanding shares entitled to vote on the amendment, and not less than 75% of the outstanding shares of each class entitled to vote thereon as a class. Our bylaws may be amended by the affirmative vote of a majority of the directors then in office, subject to any limitations set forth in the bylaws; and may also be amended by the affirmative vote of at least 75% of the outstanding shares entitled to vote on the amendment, or, if our board of directors recommends that the stockholders approve the amendment, by the affirmative vote of the majority of the outstanding shares entitled to vote on the amendment, in each case voting together as a single class.

Undesignated Preferred Stock

        Our certificate of incorporation provides for                authorized shares of preferred stock. The existence of authorized but unissued shares of preferred stock may enable our board of directors to discourage an attempt to obtain control of us by means of a merger, tender offer, proxy contest or otherwise. For example, if in the due exercise of its fiduciary obligations, our board of directors were to determine that a takeover proposal is not in the best interests of our stockholders, our board of directors could cause shares of preferred stock to be issued without stockholder approval in one or more private offerings or other transactions that might dilute the voting or other rights of the proposed acquirer or insurgent stockholder or stockholder group. In this regard, our certificate of incorporation grants our board of directors broad power to establish the rights and preferences of authorized and unissued shares of preferred stock. The issuance of shares of preferred stock could decrease the amount of earnings and assets available for distribution to holders of shares of common stock. The issuance may also adversely affect the rights and powers, including voting rights, of these holders and may have the effect of delaying, deterring or preventing a change in control of us.

Choice of forum

        Our certificate of incorporation provides that, unless we consent in writing to the selection of an alternative form, the Court of Chancery of the State of Delaware will be the sole and exclusive forum for: (1) any derivative action or proceeding brought on our behalf; (2) any action asserting a claim of breach of a fiduciary duty or other wrongdoing by any of our directors, officers, employees or agents to us or our stockholders; (3) any action asserting a claim against us arising pursuant to any provision of the General Corporation Law of the State of Delaware or our certificate of incorporation or bylaws; (4) any action to interpret, apply, enforce or determine the validity of our certificate of incorporation or bylaws; or (5) any action asserting a claim governed by the internal affairs doctrine. Our certificate of incorporation also provides that any person or entity purchasing or otherwise acquiring any interest in shares of our capital stock will be deemed to have notice of and to have consented to this choice of forum provision. It is possible that a court of law could rule that the choice of forum provision contained in our restated certificate of incorporation is inapplicable or unenforceable if it is challenged in a proceeding or otherwise.

Section 203 of the Delaware General Corporation Law

        Upon completion of this offering, we will be subject to the provisions of Section 203 of the Delaware General Corporation Law. In general, Section 203 prohibits a publicly held Delaware corporation from engaging in a "business combination" with an "interested stockholder" for a three-year period following the time that this stockholder becomes an interested stockholder, unless the business combination is approved in a prescribed manner. Under Section 203, a business combination

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between a corporation and an interested stockholder is prohibited unless it satisfies one of the following conditions:

    before the stockholder became interested, our board of directors approved either the business combination or the transaction which resulted in the stockholder becoming an interested stockholder;

    upon consummation of the transaction which resulted in the stockholder becoming an interested stockholder, the interested stockholder owned at least 85% of the voting stock of the corporation outstanding at the time the transaction commenced, excluding for purposes of determining the voting stock outstanding, shares owned by persons who are directors and also officers, and employee stock plans, in some instances, but not the outstanding voting stock owned by the interested stockholder; or

    at or after the time the stockholder became interested, the business combination was approved by our board of directors and authorized at an annual or special meeting of the stockholders by the affirmative vote of at least two-thirds of the outstanding voting stock which is not owned by the interested stockholder.

        Section 203 defines a business combination to include:

    any merger or consolidation involving the corporation and the interested stockholder;

    any sale, transfer, lease, pledge or other disposition involving the interested stockholder of 10% or more of the assets of the corporation;

    subject to exceptions, any transaction that results in the issuance or transfer by the corporation of any stock of the corporation to the interested stockholder;

    subject to exceptions, any transaction involving the corporation that has the effect of increasing the proportionate share of the stock of any class or series of the corporation beneficially owned by the interested stockholder; and

    the receipt by the interested stockholder of the benefit of any loans, advances, guarantees, pledges or other financial benefits provided by or through the corporation.

        In general, Section 203 defines an interested stockholder as any entity or person beneficially owning 15% or more of the outstanding voting stock of the corporation and any entity or person affiliated with or controlling or controlled by the entity or person.

NASDAQ Global Market Listing

        We intend to apply to list our common stock on The NASDAQ Global Market under the trading symbol "RARX."

Transfer Agent and Registrar

        The transfer agent and registrar for our common stock will be                        .

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SHARES ELIGIBLE FOR FUTURE SALE

        Prior to this offering, there has been no public market for our shares. Future sales of our common stock in the public market, or the availability of such shares for sale in the public market, could adversely affect market prices prevailing from time to time. As described below, only a limited number of shares will be available for sale shortly after this offering due to contractual and legal restrictions on resale. Nevertheless, sales of our common stock in the public market after such restrictions lapse, or the perception that those sales may occur, could adversely affect the prevailing market price at such time and our ability to raise equity capital in the future.

        Based on the number of shares outstanding as of August 16, 2016, upon the completion of this offering,                shares of our common stock will be outstanding. Of the outstanding shares, all of the shares sold in this offering will be freely tradable, except that any shares held by our affiliates, as that term is defined in Rule 144 under the Securities Act, may only be sold in compliance with the limitations described below, and                shares of our common stock are restricted shares of common stock subject to time-based vesting terms. All remaining shares of common stock held by existing stockholders immediately prior to the completion of this offering will be "restricted securities" as such term is defined in Rule 144. These restricted securities were issued and sold by us, or will be issued and sold by us, in private transactions and are eligible for public sale only if registered under the Securities Act or if they qualify for an exemption from registration under the Securities Act, including the exemptions provided by Rule 144 or Rule 701, summarized below.

Rule 144

        In general, a person who has beneficially owned restricted stock for at least six months would be entitled to sell their securities provided that (i) such person is not deemed to have been one of our affiliates at the time of, or at any time during the 90 days preceding, a sale and (ii) we are subject to the Securities Exchange Act of 1934, as amended, or the Exchange Act, periodic reporting requirements for at least 90 days before the sale. Persons who have beneficially owned restricted shares for at least six months but who are our affiliates at the time of, or any time during the 90 days preceding, a sale, would be subject to additional restrictions, by which such person would be entitled to sell within any three-month period only a number of securities that does not exceed the greater of either of the following:

provided, in each case, that we are subject to the Exchange Act periodic reporting requirements for at least 90 days before the sale. Such sales both by affiliates and by non-affiliates must also comply with the manner of sale, current public information and notice provisions of Rule 144.

Rule 701

        Rule 701 under the Securities Act, as in effect on the date of this prospectus, permits resales of shares in reliance upon Rule 144 but without compliance with certain restrictions of Rule 144, including the holding period requirement. Most of our employees, executive officers or directors who purchased shares under a written compensatory plan or contract may be entitled to rely on the resale provisions of Rule 701, but all holders of Rule 701 shares are required to wait until 90 days after the date of this prospectus before selling their shares.

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        However, substantially all Rule 701 shares are subject to lock-up agreements as described below and under "Underwriting" included elsewhere in this prospectus and will become eligible for sale upon the expiration of the restrictions set forth in those agreements.

Lock-Up Agreements

        All of our directors, executive officers and stockholders have signed a lock-up agreement that prevents them from selling any of our common stock or any securities convertible into or exercisable or exchangeable for common stock for a period of not less than 180 days from the date of this prospectus without the prior written consent of the representatives, subject to certain exceptions. See the section entitled "Underwriting" appearing elsewhere in this prospectus for more information.

Registration Rights

        Upon completion of this offering, certain holders of our securities will be entitled to various rights with respect to registration of their shares under the Securities Act. Registration of these shares under the Securities Act would result in these shares becoming fully tradable without restriction under the Securities Act immediately upon the effectiveness of the registration. See the section entitled "Description of Capital Stock—Registration Rights" appearing elsewhere in this prospectus for more information.

Equity Incentive Plans

        We intend to file one or more registration statements on Form S-8 under the Securities Act to register our shares issued or reserved for issuance under our equity incentive plans. The first such registration statement is expected to be filed soon after the date of this prospectus and will automatically become effective upon filing with the SEC. Accordingly, shares registered under such registration statement will be available for sale in the open market, unless such shares are subject to vesting restrictions with us or the lock-up restrictions described above. As of                        , 2016, we estimate that such registration statement on Form S-8 will cover approximately                shares.

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MATERIAL U.S. FEDERAL INCOME TAX CONSIDERATIONS FOR
NON-U.S. HOLDERS OF COMMON STOCK

        The following discussion is a summary of the material U.S. federal income tax considerations applicable to non-U.S. holders (as defined below) with respect to their ownership and disposition of shares of our common stock issued pursuant to this offering. For purposes of this discussion, a non-U.S. holder means a beneficial owner of our common stock that is for U.S. federal income tax purposes:

        This discussion does not address the tax treatment of partnerships or other entities that are pass-through entities for U.S. federal income tax purposes or persons that hold their common stock through partnerships or other pass-through entities. A partner in a partnership or other pass-through entity that will hold our common stock should consult his, her or its own tax advisor regarding the tax consequences of acquiring, holding and disposing of our common stock through a partnership or other pass-through entity, as applicable.

        This discussion is based on current provisions of the U.S. Internal Revenue Code of 1986, as amended, which we refer to as the Code, existing and proposed U.S. Treasury Regulations promulgated thereunder, current administrative rulings and judicial decisions, all as in effect as of the date of this prospectus and, all of which are subject to change or to differing interpretation, possibly with retroactive effect. Any such change or differing interpretation could alter the tax consequences to non-U.S. holders described in this prospectus. There can be no assurance that the Internal Revenue Service, which we refer to as the IRS, will not challenge one or more of the tax consequences described herein. We assume in this discussion that a non-U.S. holder holds shares of our common stock as a capital asset, generally property held for investment.

        This discussion does not address all aspects of U.S. federal income that may be relevant to a particular non-U.S. holder in light of that non-U.S. holder's individual circumstances nor does it address any aspects of any U.S. federal tax other than the income tax, U.S. state, local or non-U.S. taxes, the alternative minimum tax, or the Medicare tax on net investment income. This discussion also does not consider any specific facts or circumstances that may apply to a non-U.S. holder and does not address the special tax rules applicable to particular non-U.S. holders, such as:

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        This discussion is for general information only and is not tax advice. Accordingly, all prospective non-U.S. holders of our common stock should consult their own tax advisors with respect to the U.S. federal, state, local and non-U.S. tax consequences of the purchase, ownership and disposition of our common stock.

Distributions on Our Common Stock

        Distributions, if any, on our common stock generally will constitute dividends for U.S. federal income tax purposes to the extent paid from our current or accumulated earnings and profits, as determined under U.S. federal income tax principles. If a distribution exceeds our current and accumulated earnings and profits, the excess will be treated as a tax-free return of the non-U.S. holder's investment, up to such holder's tax basis in the common stock. Any remaining excess will be treated as capital gain, subject to the tax treatment described below in "Gain on sale, exchange or other disposition of our common stock." Any such distributions will also be subject to the discussion below under the section titled "Withholding and Information Reporting Requirements—FATCA."

        Subject to the discussion in the following two paragraphs in this section, dividends paid to a non-U.S. holder generally will be subject to withholding of U.S. federal income tax at a 30% rate or such lower rate as may be specified by an applicable income tax treaty between the United States and such holder's country of residence.

        Dividends that are treated as effectively connected with a trade or business conducted by a non-U.S. holder within the United States and, if an applicable income tax treaty so provides, that are attributable to a permanent establishment or a fixed base maintained by the non-U.S. holder within the United States, are generally exempt from the 30% withholding tax if the non-U.S. holder satisfies applicable certification and disclosure requirements. However, such U.S. effectively connected income, net of specified deductions and credits, is taxed at the same graduated U.S. federal income tax rates applicable to United States persons (as defined in the Code). Any U.S. effectively connected income received by a non-U.S. holder that is a corporation may also, under certain circumstances, be subject to an additional "branch profits tax" at a 30% rate or such lower rate as may be specified by an applicable income tax treaty between the United States and such holder's country of residence.

        A non-U.S. holder of our common stock who claims the benefit of an applicable income tax treaty between the United States and such holder's country of residence generally will be required to provide a properly executed IRS Form W-8BEN or W-8BEN-E (or successor form) and satisfy applicable certification and other requirements. Non-U.S. holders are urged to consult their tax advisors regarding their entitlement to benefits under a relevant income tax treaty. A non-U.S. holder that is eligible for a

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reduced rate of U.S. withholding tax under an income tax treaty may obtain a refund or credit of any excess amounts withheld by timely filing a U.S. tax return with the IRS.

Gain on Sale or Other Taxable Disposition of Our Common Stock

        Subject to the discussion below under "Withholding and Information Reporting Requirements—FATCA," a non-U.S. holder generally will not be subject to any U.S. federal income tax on any gain realized upon such holder's sale or other taxable disposition of shares of our common stock unless:

Backup Withholding and Information Reporting

        We must report annually to the IRS and to each non-U.S. holder the gross amount of the distributions on our common stock paid to such holder and the tax withheld, if any, with respect to such distributions. Non-U.S. holders may have to comply with specific certification procedures to establish that the holder is not a United States person (as defined in the Code) in order to avoid backup withholding at the applicable rate with respect to dividends on our common stock. Dividends

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paid to non-U.S. holders subject to withholding of U.S. federal income tax, as described above in "Distributions on Our Common Stock," generally will be exempt from U.S. backup withholding.

        Information reporting and backup withholding will generally apply to the proceeds of a disposition of our common stock by a non-U.S. holder effected by or through the U.S. office of any broker, U.S. or foreign, unless the holder certifies its status as a non-U.S. holder and satisfies certain other requirements, or otherwise establishes an exemption. Generally, information reporting and backup withholding will not apply to a payment of disposition proceeds to a non-U.S. holder where the transaction is effected outside the United States through a non-U.S. office of a broker. However, for information reporting purposes, dispositions effected through a non-U.S. office of a broker with substantial U.S. ownership or operations generally will be treated in a manner similar to dispositions effected through a U.S. office of a broker. Non-U.S. holders should consult their own tax advisors regarding the application of the information reporting and backup withholding rules to them. Copies of information returns may be made available to the tax authorities of the country in which the non-U.S. holder resides or is incorporated under the provisions of a specific treaty or agreement. Backup withholding is not an additional tax. Any amounts withheld under the backup withholding rules from a payment to a non-U.S. holder can be refunded or credited against the non-U.S. holder's U.S. federal income tax liability, if any, provided that an appropriate claim is filed with the IRS in a timely manner.

Withholding and Information Reporting Requirements—FATCA

        The Foreign Account Tax Compliance Act, or FATCA, generally imposes a U.S. federal withholding tax at a rate of 30% on payments of dividends on, or gross proceeds from the sale or other disposition of, our common stock paid to a foreign entity unless (i) if the foreign entity is a "foreign financial institution," such foreign entity undertakes certain due diligence, reporting, withholding, and certification obligations, (ii) if the foreign entity is not a "foreign financial institution," such foreign entity identifies certain of its U.S. investors, if any, or (iii) the foreign entity is otherwise exempt under FATCA. Under applicable U.S. Treasury regulations, withholding under FATCA currently applies to payments of dividends on our common stock, but will only apply to payments of gross proceeds from a sale or other disposition of our common stock made after December 31, 2018. Under certain circumstances, a non-U.S. holder may be eligible for refunds or credits of this withholding tax. An intergovernmental agreement between the United States and an applicable foreign country may modify the requirements described in this paragraph. Non-U.S. holders should consult their tax advisors regarding the possible implications of this legislation on their investment in our common stock and the entities through which they hold our common stock, including, without limitation, the process and deadlines for meeting the applicable requirements to prevent the imposition of the 30% withholding tax under FATCA.

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UNDERWRITING

        Under the terms and subject to the conditions contained in an underwriting agreement dated                    , 2016, we have agreed to sell to the underwriters named below, for whom Credit Suisse Securities (USA) LLC, Jefferies LLC and BMO Capital Markets Corp. are acting as representatives, the following respective numbers of shares of common stock:

Underwriter
  Number of
Shares
 

Credit Suisse Securities (USA) LLC

       

Jefferies LLC

       

BMO Capital Markets Corp. 

       

SunTrust Robinson Humphrey, Inc. 

       

Total

                  

        The underwriting agreement provides that the underwriters are obligated to purchase all the shares of common stock in the offering if any are purchased, other than those shares covered by the over-allotment option described below. The underwriting agreement also provides that if an underwriter defaults, the purchase commitments of non-defaulting underwriters may be increased or the offering may be terminated.

        We have granted to the underwriters a 30-day option to purchase, in approximately the same proportion as set forth in the table above, up to            additional shares at the initial public offering price less the underwriting discounts and commissions. The option may be exercised only to cover any over-allotments of common stock.

        The underwriters propose to offer the shares of common stock initially at the public offering price on the cover of this prospectus and to selling group members at that price less a selling concession of $             per share. The underwriters may allow a discount of $            per share on sales to other broker-dealers. After the initial public offering the representatives may change the public offering price and concession and discount to other broker-dealers.

        The following table summarizes the compensation we will pay:

 
  Per Share   Total  
 
  Without
Over-allotment
  With
Over-allotment
  Without
Over-allotment
  With
Over-allotment
 

Underwriting discounts and commissions paid by us

  $     $     $     $    

        We estimate that our out-of-pocket expenses for this offering (not including any underwriting discounts and commissions) will be approximately $            . We have agreed to reimburse the underwriters for expenses of approximately $            related to the clearance of this offering with the Financial Industry Regulatory Authority.

        The underwriters have informed us that they do not expect sales to accounts over which the underwriters have discretionary authority to exceed 5% of the shares of common stock being offered.

        We have agreed that we will not offer, sell, contract to sell, pledge or otherwise dispose of, directly or indirectly, or file with the Securities and Exchange Commission a registration statement under the Securities Act relating to, any shares of our common stock or securities convertible into or exchangeable or exercisable for any shares of our common stock, or publicly disclose the intention to make any offer, sale, pledge, disposition or filing, without the prior written consent of Credit Suisse (USA) LLC, Jefferies LLC and BMO Capital Markets Corp. for a period of 180 days after the date of

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this prospectus. The restrictions described in this paragraph do not apply in certain circumstances, including grants of employee stock options pursuant to our existing plans or issuances pursuant to the exercise of such employee options.

        Our officers and directors and other stockholders and optionholders have agreed that they will not offer, sell, contract to sell, pledge or otherwise dispose of, directly or indirectly, any shares of our common stock or securities convertible into or exchangeable or exercisable for any shares of our common stock, enter into a transaction that would have the same effect, or enter into any swap, hedge or other arrangement that transfers, in whole or in part, any of the economic consequences of ownership of our common stock, whether any of these transactions are to be settled by delivery of our common stock or other securities, in cash or otherwise, or publicly disclose the intention to make any offer, sale, pledge or disposition, or to enter into any transaction, swap, hedge or other arrangement, without, in each case, the prior written consent of the representatives for a period of 180 days after the date of this prospectus. The restrictions described in this paragraph do not apply in certain circumstances, including: (i) transfers as a bona fide gift or gifts or for bona fide estate planning purposes; (ii) transfers to a trust or limited family partnership for the direct or indirect benefit of the securityholder or the immediate family of the securityholder; (iii) transfers by will, other testamentary document or intestate succession; (iv) transfers pursuant to a court order in respect of, or by operation of law, as a result of a divorce; (v) transfers to us in connection with the exercise, including any "net" exercise, of any options or warrants or the conversion of any convertible security in accordance with its terms, provided that any securities issued upon such exercise or conversion will be subject to the lock-up restrictions and no filing or public announcement under the Securities Exchange Act of 1934, as amended, or the Exchange Act, is required or is voluntarily made in connection with such transfer, exercise, or conversion, other than a filing on a Form 5 made after the expiration of the lock-up period or, in the case of a "net" exercise, a filing on a Form 4 that reports such "net" exercise under the transaction code "F"); (vi) transfers to wholly-owned and controlled limited liability company or partnership; (vii) with respect to a securityholder that is a trust, transfers to any beneficiary or the estate of any such beneficiary; (viii) transfers or distributions to members, limited partners, stockholders or affiliates of, or any investment fund or other entity that controls or manages, the securityholder; (ix) transfers or distributions in connection with a merger or sale of all or substantially all of our voting securities or assets; (x) the entering into of a written trading plan pursuant to Rule 10b5-1 of the Exchange Act during the lock-up period, provided that no sales of the securities are made pursuant to such plan, and no public disclosures are made regarding such plan, prior to the expiration of the lock-up period; and; (xi) securities purchased in the open market or in this offering so long as no filing or public announcement by any party under Section 16 of the Exchange Act is required or will be voluntarily made, other than a filing on a Form 5 made after the expiration of the lock-up period.

        We have agreed to indemnify the underwriters against liabilities under the Securities Act, or contribute to payments that the underwriters may be required to make in that respect.

        We intend to apply to list the shares of our common stock on The NASDAQ Global Market under the symbol "RARX."

        Prior to the offering, there has been no public market for our common stock. The initial public offering price will be determined through negotiations between us and the representatives. In determining the initial public offering price, we and the representatives expect to consider a number of factors including:

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        Neither we nor the underwriters can assure investors that an active trading market will develop for our common stock, or that shares of our common stock will trade in the public market at or above the initial public offering price.

        In connection with the offering the underwriters may engage in stabilizing transactions, over-allotment transactions, syndicate covering transactions, penalty bids and passive market making in accordance with Regulation M under the Exchange Act.

        These stabilizing transactions, syndicate covering transactions and penalty bids may have the effect of raising or maintaining the market price of our common stock or preventing or retarding a decline in the market price of the common stock. As a result the price of our common stock may be higher than the price that might otherwise exist in the open market. These transactions may be effected on The NASDAQ Global Market or otherwise and, if commenced, may be discontinued at any time.

        A prospectus in electronic format may be made available on the websites maintained by one or more of the underwriters, or selling group members, if any, participating in this offering and one or more of the underwriters participating in this offering may distribute prospectuses electronically. The representatives may agree to allocate a number of shares to underwriters and selling group members

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for sale to their online brokerage account holders. Internet distributions will be allocated by the underwriters and selling group members that will make Internet distributions on the same basis as other allocations.

Other Relationships

        Certain of the underwriters and their affiliates may provide from time to time in the future certain commercial banking, financial advisory, investment banking and other services for us and such affiliates in the ordinary course of their business, for which they may receive customary fees and commissions. In addition, from time to time, certain of the underwriters and their affiliates may effect transactions for their own account or the account of customers, and hold on behalf of themselves or their customers, long or short positions in our debt or equity securities or loans, and may do so in the future. The underwriters are full service financial institutions engaged in various activities, which may include securities trading, commercial and investment banking, financial advisory, investment management, principal investment, hedging, financing and brokerage activities.

Selling Restrictions

Notice to Prospective Investors in Australia

        This prospectus is not a disclosure document for the purposes of Australia's Corporations Act 2001 (Cth) of Australia, or Corporations Act, has not been lodged with the Australian Securities & Investments Commission and is only directed to the categories of exempt persons set out below. Accordingly, if you receive this prospectus in Australia:

Notice to Canadian Residents

Resale Restrictions

        The distribution of shares of common stock in Canada is being made only in the provinces of Ontario, Quebec, Alberta and British Columbia on a private placement basis exempt from the requirement that we prepare and file a prospectus with the securities regulatory authorities in each province where trades of these securities are made. Any resale of the common stock in Canada must be made under applicable securities laws which may vary depending on the relevant jurisdiction, and

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which may require resales to be made under available statutory exemptions or under a discretionary exemption granted by the applicable Canadian securities regulatory authority. Purchasers are advised to seek legal advice prior to any resale of the securities.

Representations of Canadian Purchasers

        By purchasing shares of our common stock in Canada and accepting delivery of a purchase confirmation, a purchaser is representing to us and the dealer from whom the purchase confirmation is received that:

Conflicts of Interest

        Canadian purchasers are hereby notified that the underwriters are relying on the exemption set out in section 3A.3 or 3A.4, if applicable, of National Instrument 33-105— Underwriting Conflicts from having to provide certain conflict of interest disclosure in this document.

Statutory Rights of Action

        Securities legislation in certain provinces or territories of Canada may provide a purchaser with remedies for rescission or damages if the offering memorandum (including any amendment thereto) such as this document contains a misrepresentation, provided that the remedies for rescission or damages are exercised by the purchaser within the time limit prescribed by the securities legislation of the purchaser's province or territory. The purchaser of these securities in Canada should refer to any applicable provisions of the securities legislation of the purchaser's province or territory for particulars of these rights or consult with a legal advisor.

Enforcement of Legal Rights

        All of our directors and officers as well as the experts named herein may be located outside of Canada and, as a result, it may not be possible for Canadian purchasers to effect service of process within Canada upon us or those persons. All or a substantial portion of our assets and the assets of those persons may be located outside of Canada and, as a result, it may not be possible to satisfy a judgment against us or those persons in Canada or to enforce a judgment obtained in Canadian courts against us or those persons outside of Canada.

Taxation and Eligibility for Investment

        Canadian purchasers of our common stock should consult their own legal and tax advisors with respect to the tax consequences of an investment in the shares of common stock in their particular circumstances and about the eligibility of the shares of common stock for investment by the purchaser under relevant Canadian legislation.

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Notice to Prospective Investors in the European Economic Area

        In relation to each Member State of the European Economic Area that has implemented the Prospectus Directive, or each, a Relevant Member State, each underwriter represents and agrees that with effect from and including the date on which the Prospectus Directive is implemented in that Relevant Member State, or the Relevant Implementation Date, it has not made and will not make an offer of our common stock to the public in that Relevant Member State prior to the publication of a prospectus in relation to our common stock that has been approved by the competent authority in that Relevant Member State or, where appropriate, approved in another Relevant Member State and notified to the competent authority in that Relevant Member State, all in accordance with the Prospectus Directive, except that it may, with effect from and including the Relevant Implementation Date, make an offer of our common stock to the public in that Relevant Member State at any time:

provided that no such offer of our common stock shall require the publication by the issuer or any underwriter of a prospectus pursuant to Article 3 of the Prospectus Directive.

        For the purposes of this provision, the expression an "offer to the public" in relation to any shares of our common stock in any Relevant Member State means the communication in any form and by any means of sufficient information on the terms of the offer and our common stock to be offered so as to enable an investor to decide to purchase or subscribe our common stock, as the same may be varied in that Relevant Member State by any measure implementing the Prospectus Directive in that Member State and the expression Prospectus Directive means Directive 2003/71/EC (and amendments thereto, including Directive 2010/73/EU, to the extent implemented in each Relevant Member State) and includes any relevant implementing measure in each Relevant Member State.

Notice to Prospective Investors in Hong Kong

        No securities have been offered or sold, and no securities may be offered or sold, in Hong Kong, by means of any document, other than to persons whose ordinary business is to buy or sell shares or debentures, whether as principal or agent; or to "professional investors" as defined in the Securities and Futures Ordinance (Cap. 571) of Hong Kong ("SFO") and any rules made under that Ordinance; or in other circumstances which do not result in the document being a "prospectus" as defined in the Companies Ordinance (Cap. 32) of Hong Kong ("CO") or which do not constitute an offer or invitation to the public for the purpose of the CO or the SFO. No document, invitation or advertisement relating to the securities has been issued or may be issued or may be in the possession of any person for the purpose of issue (in each case whether in Hong Kong or elsewhere), which is directed at, or the contents of which are likely to be accessed or read by, the public of Hong Kong (except if permitted under the securities laws of Hong Kong) other than with respect to securities which are or are intended to be disposed of only to persons outside Hong Kong or only to "professional investors" as defined in the SFO and any rules made under that Ordinance.

        This prospectus has not been registered with the Registrar of Companies in Hong Kong. Accordingly, this prospectus may not be issued, circulated or distributed in Hong Kong, and the securities may not be offered for subscription to members of the public in Hong Kong. Each person acquiring the securities will be required, and is deemed by the acquisition of the securities, to confirm that he is aware of the restriction on offers of the securities described in this prospectus and the

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relevant offering documents and that he is not acquiring, and has not been offered any securities in circumstances that contravene any such restrictions.

Notice to Prospective Investors in Japan

        The offering has not been and will not be registered under the Financial Instruments and Exchange Law of Japan (Law No. 25 of 1948 of Japan, as amended), or FIEL, and the prospectus will not offer or sell any securities, directly or indirectly, in Japan or to, or for the benefit of, any resident of Japan (which term as used herein means any person resident in Japan, including any corporation or other entity organized under the laws of Japan), or to others for re-offering or resale, directly or indirectly, in Japan or to, or for the benefit of, any resident of Japan, except pursuant to an exemption from the registration requirements of, and otherwise in compliance with, the FIEL and any other applicable laws, regulations and ministerial guidelines of Japan.

Notice to Prospective Investors in Singapore

        This prospectus has not been and will not be lodged or registered as a prospectus with the Monetary Authority of Singapore. Accordingly, this prospectus and any other document or material in connection with the offer or sale, or invitation for subscription or purchase, of the shares of common stock may not be circulated or distributed, nor may the common stock be offered or sold, or be made the subject of an invitation for subscription or purchase, whether directly or indirectly, to persons in Singapore other than (i) to an institutional investor under Section 274 of the Securities and Futures Act, Chapter 289 of Singapore (the "SFA"), (ii) to a relevant person pursuant to Section 275(1), or any person pursuant to Section 275(1A), and in accordance with the conditions specified in Section 275, of the SFA, or (iii) otherwise pursuant to, and in accordance with the conditions of, any other applicable provision of the SFA.

        Where the shares of common stock are subscribed or purchased under Section 275 of the SFA by a relevant person which is:

securities (as defined in Section 239(1) of the SFA) of that corporation or the beneficiaries' rights and interest (howsoever described) in that trust shall not be transferred within six months after that corporation or that trust has acquired the shares of common stock pursuant to an offer made under Section 275 of the SFA except:

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Notice to Prospective Investors in Switzerland

        This document is not intended to constitute an offer or solicitation to purchase or invest in the securities described herein. The securities may not be publicly offered, sold or advertised, directly or indirectly, in, into or from Switzerland and will not be listed on the SIX Swiss Exchange or on any other exchange or regulated trading facility in Switzerland. Neither this document nor any other offering or marketing material relating to the securities constitutes a prospectus as such term is understood pursuant to article 652a or article 1156 of the Swiss Code of Obligations or a listing prospectus within the meaning of the listing rules of the SIX Swiss Exchange or any other regulated trading facility in Switzerland, and neither this document nor any other offering or marketing material relating to the securities may be publicly distributed or otherwise made publicly available in Switzerland.

        Neither this document nor any other offering or marketing material relating to the offering, nor the Company nor the securities have been or will be filed with or approved by any Swiss regulatory authority. The securities are not subject to the supervision by any Swiss regulatory authority, e.g., the Swiss Financial Markets Supervisory Authority FINMA (FINMA), and investors in the securities will not benefit from protection or supervision by such authority.

Notice to Prospective Investors in the United Kingdom

        Each underwriter:

        This prospectus is directed solely at persons who (i) are outside the United Kingdom or (ii) have professional experience in matters relating to investments or (iii) are persons falling within Article 49(2)(a) to (d) of the FSMA (Financial Promotion) Order 2005 (all such persons together being referred to as "relevant persons"). This prospectus must not be acted on or relied on by persons who are not relevant persons. Any investment or investment activity to which this prospectus relates is available only to relevant persons and will be engaged in with relevant persons only.

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LEGAL MATTERS

        The validity of the shares of common stock offered by this prospectus will be passed upon for us by Goodwin Procter LLP, Boston, Massachusetts. Certain legal matters related to this offering will be passed upon for the underwriters by Latham & Watkins LLP.


EXPERTS

        The consolidated financial statements as of December 31, 2014 and 2015 and for the years then ended, included in this prospectus, have been audited by Deloitte & Touche LLP, an independent registered public accounting firm, as stated in their report appearing herein (which report expresses an unqualified opinion on the consolidated financial statements and includes an explanatory paragraph referring to our ability to continue as a going concern). Such consolidated financial statements have been so included in reliance upon the report of such firm given upon their authority as experts in accounting and auditing.


WHERE YOU CAN FIND MORE INFORMATION

        We have filed with the SEC a registration statement on Form S-1 (File Number 333-                ) under the Securities Act with respect to the common stock we are offering by this prospectus. This prospectus does not contain all of the information included in the registration statement. For further information pertaining to us and our common stock, you should refer to the registration statement and to its exhibits. Whenever we make reference in this prospectus to any of our contracts, agreements or other documents, the references are not necessarily complete, and you should refer to the exhibits attached to the registration statement for copies of the actual contract, agreement or other document.

        Upon the completion of the offering, we will be subject to the informational requirements of the Exchange Act and will file annual, quarterly and current reports, proxy statements and other information with the SEC. You can read our SEC filings, including the registration statement, at the SEC's website at www.sec.gov. You may also read and copy any document we file with the SEC at its public reference facility at 100 F Street, N.E., Room 1580, Washington, D.C. 20549. We also maintain a website at www.rapharma.com. Upon completion of the offering, you may access, free of charge, our annual reports on Form 10-K, quarterly reports on Form 10-Q, current reports on Form 8-K and amendment to those reported filed or furnished pursuant to Section 13(a) or 15(d) of the Exchange Act as soon as reasonably practicable after such material is electronically filed with, or furnished to, the SEC.

        You may also obtain copies of the documents at prescribed rates by writing to the Public Reference Section of the SEC at 100 F Street, N.E., Washington, D.C. 20549. Please call the SEC at 1-800-SEC-0330 for further information on the operation of the public reference facilities.

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RA PHARMACEUTICALS, INC.

INDEX TO CONSOLIDATED FINANCIAL STATEMENTS

 
  Pages  

Report of Independent Registered Public Accounting Firm

    F-2  

Consolidated Balance Sheets as of December 31, 2014, December 31, 2015 and June 30, 2016 (unaudited) and June 30, 2016 Pro Forma (unaudited)

   
F-3
 

Consolidated Statements of Operations for the years ended December 31, 2014, December 31, 2015 and for the six months ended June 30, 2015 (unaudited) and June 30, 2016 (unaudited)

   
F-4
 

Consolidated Statements of Redeemable Convertible Preferred Stock and Stockholders' Deficit for the years ended December 31, 2014, December 31, 2015 and June 30, 2016 (unaudited)

   
F-5
 

Consolidated Statements of Cash Flows for the years ended December 31, 2014, December 31, 2015 and for the six months ended June 30, 2015 (unaudited) and June 30, 2016 (unaudited)

   
F-6
 

Notes to Consolidated Financial Statements

   
F-7
 

F-1


Table of Contents


REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM

To the Board of Directors and Stockholders of
Ra Pharmaceuticals, Inc.
Cambridge, Massachusetts

        We have audited the accompanying consolidated balance sheets of Ra Pharmaceuticals, Inc. and subsidiaries (the "Company") as of December 31, 2014 and 2015, and the related consolidated statements of operations, redeemable convertible preferred stock and stockholders' deficit, and cash flows for the years then ended. These financial statements are the responsibility of the Company's management. Our responsibility is to express an opinion on these financial statements based on our audits.

        We conducted our audits in accordance with the standards of the Public Company Accounting Oversight Board (United States). Those standards require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. The Company is not required to have, nor were we engaged to perform, an audit of its internal control over financial reporting. Our audits included consideration of internal control over financial reporting as a basis for designing audit procedures that are appropriate in the circumstances, but not for the purpose of expressing an opinion on the effectiveness of the Company's internal control over financial reporting. Accordingly, we express no such opinion. An audit also includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements, assessing the accounting principles used and significant estimates made by management, as well as evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion.

        In our opinion, such consolidated financial statements present fairly, in all material respects, the financial position of the Company as of December 31, 2014 and 2015, and the results of its operations and its cash flows for the years then ended, in conformity with accounting principles generally accepted in the United States of America.

        The accompanying consolidated financial statements have been prepared assuming that the Company will continue as a going concern. As discussed in Note 1 to the consolidated financial statements, the Company's recurring losses from operations, cash used in operations, and accumulated stockholders' deficit raise substantial doubt about its ability to continue as a going concern. Management's plans concerning these matters are also discussed in Note 1 to the consolidated financial statements. The financial statements do not include any adjustments that might result from the outcome of this uncertainty.

/s/ Deloitte & Touche LLP

Boston, Massachusetts
August 17, 2016

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RA PHARMACEUTICALS, INC.

CONSOLIDATED BALANCE SHEETS

(In thousands, except share and per share data)

 
  December 31,   June 30, 2016  
 
  2014   2015   Actual   Pro Forma  
 
   
   
  (Unaudited)
  (Unaudited)
 

Assets

                         

Current assets:

                         

Cash and cash equivalents

  $ 4,039   $ 19,386   $ 40,246   $ 40,246  

Accounts receivable

    70     6     7     7  

Prepaid expenses and other current assets

    338     794     1,212     1,212  

Total current assets

    4,447     20,186     41,465     41,465  

Property and equipment, net

    2,163     2,143     5,968     5,968  

Intangible assets, net

    393     327     295     295  

Goodwill

    183     183     183     183  

Restricted cash

    129     1,463     1,334     1,334  

Other non-current assets

        40     67      

Total assets

  $ 7,315   $ 24,342   $ 49,312   $ 49,245  

Liabilities, redeemable convertible preferred stock and stockholders' (deficit) equity

                         

Current liabilities:

                         

Accounts payable

  $ 563   $ 1,319   $ 3,037   $ 3,037  

Accrued expenses

    444     1,274     3,319     3,319  

Deferred rent

    17     104     134     134  

Deferred revenue

    1,781     1,621          

Preferred stock tranche rights

        2,620          

Total current liabilities

    2,805     6,938     6,490     6,490  

Non-current liabilities:

                         

Deferred rent, net of current portion

    180     610     3,008     3,008  

Deferred tax liabilities

    96     77     77     77  

Deferred revenue, net of current portion

    964     241          

Total liabilities

    4,045     7,866     9,575     9,575  

Commitments and contingencies (Note 8)

                         

Redeemable convertible preferred stock:

                         

Series A redeemable convertible preferred stock, $0.001 par value, 34,440,565 shares authorized, issued, and outstanding at December 31, 2014 and 2015, and June 30, 2016 (unaudited); no shares issued and outstanding pro forma (unaudited); aggregate liquidation preference of $27,613 at December 31, 2014 and 2015, and June 30, 2016 (unaudited) and none pro forma (unaudited)

    28,984     27,311     27,311      

Series B-1 redeemable convertible preferred stock, $0.001 par value, 0, 31,564,630 and 31,564,630 shares authorized, issued, and outstanding at December 31, 2014 and 2015, and June 30, 2016 (unaudited); no shares issued and outstanding pro forma (unaudited); aggregate liquidation preference of $0 and, $29,250, $29,250 at December 31, 2014 and 2015, and June 30, 2016 (unaudited) and none pro forma (unaudited)

        26,364     26,364      

Series B-2 redeemable convertible preferred stock, $0.001 par value, 0, 29,362,452 and 29,362,452 shares authorized at December 31, 2014 and 2015, and June 30, 2016 (unaudited); 0, 0 and 29,362,452 shares issued and outstanding at December 31, 2014 and 2015, and June 30, 2016 (unaudited); no shares issued and outstanding pro forma (unaudited); aggregate liquidation preference of $0, $0 and $29,250 at December 31, 2014 and 2015, and June 30, 2016 (unaudited) and none pro forma (unaudited)

            32,809      

Stockholders' (deficit) equity:

                         

Common stock, $0.001 par value, 42,000,000 shares authorized at December 31, 2014 and 125,000,000 shares authorized at December 31, 2015, and June 30, 2016 (unaudited) and pro forma (unaudited); 3,316,409, 3,756,982 and 3,883,492 shares issued and outstanding at December 31, 2014 and 2015, and June 30, 2016 (unaudited); 100,810,583 shares issued and outstanding pro forma (unaudited)

    3     4     4     101  

Additional paid-in capital

    240     2,697     3,011     89,331  

Accumulated deficit

    (25,957 )   (39,900 )   (49,762 )   (49,762 )

Total stockholders' (deficit) equity

    (25,714 )   (37,199 )   (46,747 )   39,670  

Total liabilities, redeemable convertible preferred stock and stockholders' (deficit) equity

  $ 7,315   $ 24,342   $ 49,312   $ 49,245  

   

See accompanying notes to these consolidated financial statements.

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RA PHARMACEUTICALS, INC.

CONSOLIDATED STATEMENTS OF OPERATIONS

(in thousands, except share and per share data)

 
  Years Ended December 31,   Six Months Ended June 30,  
 
  2014   2015   2015   2016  
 
   
   
  (Unaudited)
  (Unaudited)
 

Revenue

  $ 4,830   $ 4,094   $ 2,177   $ 4,928  

Operating expenses:

                         

Research & development

    10,016     15,217     6,566     11,462  

General & administrative

    1,924     2,233     1,010     2,376  

Total operating expenses

    11,940     17,450     7,576     13,838  

Loss from operations

    (7,110 )   (13,356 )   (5,399 )   (8,910 )

Other income (expense):

                         

Interest expense with shareholders          

        (159 )   (145 )    

Loss on debt extinguishment

        (602 )        

Other income (expense), net

    1,607     155     96     (952 )

Total other income (expense), net

    1,607     (606 )   (49 )   (952 )

Loss from operations before benefit from income taxes

    (5,503 )   (13,962 )   (5,448 )   (9,862 )

Benefit from income taxes

    27     19          

Net loss

  $ (5,476 ) $ (13,943 ) $ (5,448 ) $ (9,862 )

Reconciliation of net loss to net loss attributable to common shareholders:

                         

Net loss

  $ (5,476 ) $ (13,943 ) $ (5,448 ) $ (9,862 )

Gain on extinguishment of redeemable convertible preferred shares

        1,673          

Net loss attributable to common shareholders

  $ (5,476 ) $ (12,270 ) $ (5,448 ) $ (9,862 )

Net loss per share attributable to common stockholders—basic and diluted

  $ (1.78 ) $ (3.53 ) $ (1.61 ) $ (2.62 )

Weighted-average common shares used in net loss per share attributable to common stockholders—basic and diluted

    3,077,293     3,479,651     3,377,647     3,768,332  

Pro forma net loss per share attributable to common stockholders—basic and diluted (unaudited)

        $ (0.20 )       $ (0.12 )

Pro forma weighted-average common shares used in net loss per share attributable to common stockholders—basic and diluted (unaudited)

          54,043,850           73,543,051  

   

See accompanying notes to these consolidated financial statements

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RA PHARMACEUTICALS, INC.

CONSOLIDATED STATEMENTS OF REDEEMABLE CONVERTIBLE PREFERRED STOCK AND STOCKHOLDERS' DEFICIT

(in thousands, except share and per share data)

 
  Series A
Redeemable
Convertible
Preferred Stock
  Series B-1
Redeemable
Convertible
Preferred Stock
  Series B-2
Redeemable
Convertible
Preferred Stock
   
   
   
   
   
   
   
 
 
   
  Common Stock    
   
   
   
 
 
   
   
   
  Accumulated
Other
Comprehensive
Income (Loss)
   
 
 
   
   
  $0.001
Par
Value
  Additional
Paid-in
Capital
  Accumulated
Deficit
  Total
Stockholders'
Deficit
 
 
  Shares   Amount   Shares   Amount   Shares   Amount    
  Shares  
 
   
 

Balance at January 1, 2014

    23,664,282   $ 16,923       $       $         2,899,388   $ 3   $ 139   $ (20,481 ) $ (17 ) $ (20,356 )

Sale of Series A Convertible Preferred Stock at $0.80176 per share, net of issuance costs of $9

    10,776,283     12,061                                              

Stock based compensation expense

                                        88             88  

Exercise of common stock options

                                417,021         13             13  

Amounts reclassified from accumulated other comprehensive loss

                                                17     17  

Net loss

                                            (5,476 )       (5,476 )

Balance at December 31, 2014

    34,440,565   $ 28,984       $       $         3,316,409   $ 3   $ 240   $ (25,957 ) $   $ (25,714 )

Sale of Series B-1 Convertible Preferred Stock at $0.92667 per share, net of $2,694 discount associated with preferred stock tranche rights, issuance costs of $193 and the conversion of convertible notes into Series B-1 Convertible Preferred Stock. 

            31,564,630     26,364                                        

Extinguishment of Series A Convertible Preferred Stock

        (1,673 )                               1,673             1,673  

Issuance of common stock warrants

                                        548             548  

Exercise of common stock warrants

                                80,000         1             1  

Stock based compensation expense

                                        152             152  

Exercise of common stock options

                                360,573     1     83             84  

Net loss

                                              (13,943 )       (13,943 )

Balance at December 31, 2015

    34,440,565   $ 27,311     31,564,630   $ 26,364       $         3,756,982   $ 4   $ 2,697   $ (39,900 ) $   $ (37,199 )

Sale of Series B-2 Convertible Preferred Stock at $0.99617 per share, net of issuance costs of $21 (unaudited)

                    29,362,452     32,809                              

Stock based compensation expense (unaudited)

                                        271             271  

Exercise of common stock options (unaudited)

                                126,510         43             43  

Net loss (unaudited)

                                            (9,862 )       (9,862 )

Balance at June 30, 2016 (unaudited)

    34,440,565   $ 27,311     31,564,630   $ 26,364     29,362,452   $ 32,809         3,883,492   $ 4   $ 3,011   $ (49,762 ) $   $ (46,747 )

See accompanying notes to these consolidated financial statements

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RA PHARMACEUTICALS, INC.

CONSOLIDATED STATEMENTS OF CASH FLOWS

(in thousands)

 
  Years Ended
December 31,
  Six Months Ended
June 30,
 
 
  2014   2015   2015   2016  
 
   
   
  (Unaudited)
  (Unaudited)
 

Cash flows from operating activities:

                         

Net loss

  $ (5,476 ) $ (13,943 ) $ (5,448 ) $ (9,862 )

Adjustments to reconcile net loss to net cash used in operating activities:

                         

Depreciation and amortization

    714     897     396     669  

Accretion of discount and debt issuance costs of convertible notes with shareholders            

        50     45      

Non-cash interest expense with shareholders

        109     99      

Loss on debt extinguishment with shareholders

        602          

Stock-based compensation

    88     152     91     271  

Change in fair value of preferred stock tranche rights

    (1,635 )   (74 )       960  

Change in fair value of derivative liability

        (98 )   (98 )    

Other non-cash operating activities

    34     3         19  

Changes in operating assets and liabilities:

                         

Prepaid expenses and other current assets

    (149 )   (456 )   (272 )   (418 )

Accounts receivable

    (30 )   64     (11 )   (1 )

Other non-current assets

        (40 )       (27 )

Accounts payable and accrued expenses

    525     1,102     525     2,499  

Deferred rent and other non current liabilities

    (93 )   498     (71 )   2,428  

Deferred revenue

    (1,529 )   (883 )   (513 )   (1,862 )

Net cash used in operating activities

    (7,551 )   (12,017 )   (5,257 )   (5,324 )

Cash flows from investing activities:

                         

Purchase of property and equipment

    (834 )   (331 )   (22 )   (3,221 )

Proceeds from sale of property and equipment

    9     1         4  

(Increase) decrease in restricted cash

        (1,334 )       129  

Net cash used in investing activities

    (825 )   (1,664 )   (22 )   (3,088 )

Cash flows from financing activities:

                         

Proceeds from issuance of preferred stock

    8,640     24,142         29,250  

Payment of preferred stock issuance costs

    (9 )   (193 )   (102 )   (21 )

Proceeds from issuance of convertible notes with shareholders

        5,000     5,000      

Payment of debt issuance costs

        (6 )   (5 )    

Proceeds from exercise of common stock warrants

        1     1      

Proceeds from exercise of stock options

    13     84         43  

Net cash provided by financing activities

    8,644     29,028     4,894     29,272  

Net increase (decrease) in cash and cash equivalents

    268     15,347     (385 )   20,860  

Cash and cash equivalents, beginning of period

    3,771     4,039     4,039     19,386  

Cash and cash equivalents, end of period

  $ 4,039   $ 19,386   $ 3,654   $ 40,246  

Supplemental disclosure of noncash investing and financing activity:

                         

Reclassification of Series A tranche right liability to the balance of Series A redeemable convertible preferred stock

  $ 3,430   $   $   $  

Reclassification of Series B-2 tranche right liability to the balance of Series B-2 redeemable convertible preferred stock

  $   $   $   $ 3,580  

Gain on extinguishment of Series A redeemable convertible preferred stock

  $   $ 1,673   $   $  

Conversion of convertible notes with shareholders into Series B-1 redeemable convertible preferred stock

  $   $ 5,109   $   $  

Changes in accounts payable and accrued expenses related to fixed asset additions

  $   $ 484   $   $ 1,264  

   

See accompanying notes to these consolidated financial statements.

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Table of Contents


RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

1. Organization and Operations

    The Company

        Ra Pharmaceuticals, Inc. (the "Company") is a clinical-stage biopharmaceutical company using its proprietary peptide chemistry platform to create novel therapeutics to treat life-threatening diseases that are caused by excessive or uncontrolled activation of the complement system, an essential component of the body's innate immune system. The Company's lead product candidate, RA101495, is being developed as a convenient self-administered subcutaneous, or SC, injection, which is an injection into the tissue under the skin for the treatment of paroxysmal nocturnal hemoglobinuria, or PNH, a rare, chronic, life-threatening, blood disorder where red blood cells are mistakenly attacked and destroyed by the complement system. The Company is also developing RA101495, administered SC, to treat other debilitating complement-mediated diseases such as myasthenia gravis, or MG, and lupus nephritis, or LN. The Company is also pursuing discovery and preclinical programs targeting selective inhibition of other uncontrolled complement pathway factors to treat a variety of ophthalmologic, renal and inflammatory diseases. In addition to its focus on developing novel therapeutics to treat complement-mediated diseases, the Company has a collaboration with Merck & Co., Inc., or Merck, for a non-complement cardiovascular target.

        The Company was incorporated in Delaware on June 27, 2008 and is located in Cambridge, Massachusetts. During 2011, the Company acquired Cosmix Verwaltungs GmbH ("Cosmix"), organized in Germany. The consolidated financial statements include the assets and liabilities and operating results of the Company and its wholly-owned subsidiary, Cosmix. In January 2016, the Company formed a wholly-owned subsidiary organized in the United Kingdom ("UK"), Ra Europe Limited for the purpose of conducting clinical trials in Europe and the UK. Since inception, the Company has devoted substantially all of its efforts to research and development, business planning, acquiring operating assets, seeking protection for its technology and product candidates, and raising capital.

        Since inception, the Company has incurred net losses and negative cash flows from operations, and has an accumulated deficit of $39.9 million and $49.8 million as of December 31, 2015 and June 30, 2016, respectively. The Company has financed its operations to date from preferred stock and convertible debt financings and funding from its collaboration and license agreement (the "Merck Agreement") with Merck.

    Liquidity and Going Concern

        The accompanying consolidated financial statements have been prepared on a going concern basis, which contemplates the realization of assets and the satisfaction of liabilities and commitments in the normal course of business. The Company believes that its existing cash and cash equivalents of $19.4 million as of December 31, 2015, as well as net proceeds of $29.2 million received in connection with the Series B-2 Preferred Stock issued in June 2016 (Note 9) and $3.0 million received in connection with the achievement of a milestone from the Merck Agreement in June 2016 (Note 11), offset by cash used for continued capital expenditures and operating expenses, will be sufficient to allow the Company to fund its current operating plan through the first half of 2017. There can be no assurance, however, that the current operating plan will be achieved in the timeframe anticipated by the Company, or that its cash resources will fund the Company's operating plan for the period

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

1. Organization and Operations (Continued)

anticipated by the Company, or that additional funding will be available on terms acceptable to the Company, or at all.

        The Company is subject to risks common to other life science companies in the development stage including, but not limited to, uncertainty of product development and commercialization, lack of marketing and sales history, development by its competitors of new technological innovations, dependence on key personnel, market acceptance of products, product liability, protection of proprietary technology, ability to raise additional financing, and compliance with FDA and other government regulations. If the Company does not successfully commercialize any of its product candidates, it will be unable to generate recurring product revenue or achieve profitability. Management's plans in order to meet its short-term and longer term operating cash flow requirements include obtaining additional funding from a planned initial public offering ("IPO") of its common stock.

        The uncertainties associated with the Company's ability to (1) obtain additional debt or equity financing on terms that are favorable to the Company, (2) enter into collaborative agreements with strategic partners, and (3) succeed in its future operations, raise substantial doubt about the Company's ability to continue as a going concern. The consolidated financial statements do not include any adjustments relating to the recoverability and classification of recorded asset amounts or amounts of liabilities that might be necessary should the Company be unable to continue its operations. If the Company is not able to obtain the required funding in the near future, through an IPO or other means, or is not able to obtain funding on terms that are favorable to the Company, it will have a material adverse effect on its operations and strategic development plan for future growth. If the Company cannot successfully raise additional funding and implement its strategic development plan, then its liquidity, financial condition and business prospects will be materially and adversely affected, and the Company may have to cease operations.

2. Summary of Significant Accounting Policies

    Basis of Presentation and Use of Estimates

        The accompanying consolidated financial statements have been prepared in conformity with accounting principles generally accepted in the United States of America ("GAAP"). Any reference in these notes to applicable guidance is meant to refer to the authoritative United States generally accepted accounting principles as found in the Accounting Standards Codification ("ASC") and Accounting Standards Update ("ASU") of the Financial Accounting Standards Board ("FASB"). The preparation of financial statements in conformity with GAAP requires management to make estimates and assumptions that affect the amounts reported in the financial statements and accompanying notes. On an ongoing basis, the Company's management evaluates its estimates related to, but not limited to, estimates related to convertible notes ("Convertible Notes"), bifurcated features embedded in the Convertible Notes, preferred stock tranche rights, stock-based compensation expense, clinical and pre-clinical trial accruals, and reported amounts of revenues and expenses during the period. The Company bases its estimates on historical experience and other market-specific or other relevant assumptions that it believes to be reasonable under the circumstances. Actual results may differ from those estimates or assumptions.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

        The Company utilizes significant estimates and assumptions in determining the fair value of its common stock ("Common Stock"). The Company utilized various valuation methodologies in accordance with the framework of the 2004 and 2013 American Institute of Certified Public Accountants Technical Practice Aids, Valuation of Privately-Held Company Equity Securities Issued as Compensation , to estimate the fair value of its Common Stock. Each valuation methodology includes estimates and assumptions that require the Company's judgment. These estimates and assumptions include a number of objective and subjective factors, including external market conditions affecting the biotechnology industry sector, the prices at which the Company sold shares of preferred stock, the superior rights and preferences of securities senior to the Company's Common Stock at the time and the likelihood of achieving a liquidity event, such as an initial public offering or a sale of the Company. Significant changes to the key assumptions used in the valuations could result in different fair values of Common Stock at each valuation date and materially affect the financial statements.

        All intercompany accounts and transactions with consolidated subsidiaries have been eliminated in the periods presented.

    Unaudited Interim Financial Information

        The accompanying balance sheet as of June 30, 2016, the statements of operations and cash flows for the six months ended June 30, 2015 and 2016, and the statement of convertible preferred stock and stockholders' deficit for the six months ended June 30, 2016 are unaudited. The unaudited interim financial statements have been prepared on the same basis as the audited annual financial statements and, in the opinion of management, reflect all adjustments, which include only normal recurring adjustments, necessary for a fair statement of the Company's financial position as of June 30, 2016 and the results of its operations and its cash flows for the six months ended June 30, 2015 and 2016. The financial data and other information disclosed in these notes related to the six months ended June 30, 2015 and 2016 are unaudited. The results for the six months ended June 30, 2016 are not necessarily indicative of results to be expected for the year ending December 31, 2016, any other interim periods, or any future year or period.

    Unaudited Pro Forma Financial Information

        On August 16, 2016, the Company's Board of Directors authorized the Company to file a registration statement with the Securities and Exchange Commission ("SEC") permitting the Company to sell shares of its Common Stock to the public. Upon the closing of a qualified (as defined in the Company's Articles of Incorporation) initial public offering ("IPO") or otherwise upon the election of the holders of the specified percentage of preferred stock, the outstanding redeemable convertible preferred stock will automatically convert into Common Stock. The unaudited consolidated pro forma balance sheet as of June 30, 2016 reflects the assumed conversion of all of the outstanding shares of Series A Redeemable Convertible Preferred Stock ("Series A Preferred Stock"), Series B-1 Redeemable Convertible Preferred Stock ("Series B-1 Preferred Stock") and Series B-2 Redeemable Convertible Preferred Stock ("Series B-2 Preferred Stock") (collectively "Preferred Stock") into shares of Common Stock and the net exercise of all outstanding warrants.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

        Unaudited pro forma net loss per share attributable to common stockholders is computed using the weighted-average number of common shares outstanding after giving effect to the conversion of all Preferred Stock and Convertible Notes and associated accrued interest into shares of Common Stock and the net exercise of all outstanding warrants as if such conversion and exercise had occurred at the beginning of the period presented, or the date of original issuance, if later, and excludes the interest expense, accretion of discounts, loss on debt extinguishment and change in fair value of the derivative liability related to the Convertible Notes. As the year ended December 31, 2015 and six months ended June 30, 2016 resulted in net losses, there is no income allocation required under the two-class method or dilution attributed to pro forma weighted average shares outstanding in the calculation of pro forma diluted loss per share attributable to common stockholders.

        As noted above, the unaudited pro forma information reflects the automatic conversion, at the closing of an IPO of the Company's Preferred Stock into shares of Common Stock. The conversion of Preferred Stock has been reflected assuming shares of Series B-2 Preferred Stock, Series B-1 Preferred Stock and Series A Preferred Stock convert into shares of fully paid Common Stock at the applicable conversion ratios. The unaudited pro forma information also assumes the extinguishment of any liability related to the Series B-2 Preferred Stock ("Series B-2 Preferred Stock") tranche rights ("Preferred Stock Tranche Rights") upon the closing of an IPO of the Company's Common Stock for any periods presented in which the Preferred Stock Tranche Rights were outstanding. The Preferred Stock Tranche Rights were exercised and Series B-2 Preferred Stock issued in June 2016. See Note 9 for further discussion of the Preferred Stock conversion features, as well as a discussion of the rights and preferences of the Preferred Stock. The unaudited pro forma information also reflects the net exercise of all outstanding warrants for any periods presented in which these warrants were outstanding.

    Segment Information

        Operating segments are defined as components of an enterprise about which separate discrete information is available for evaluation by the chief operating decision maker, or decision-making group, in deciding how to allocate resources and in assessing performance. The Company operates and manages its business in one operating segment, which is the business of developing peptide-based drugs for a variety of therapeutic uses.

    Foreign Currency Remeasurement

        The functional currency of the Company's wholly-owned subsidiaries, Cosmix, (based in Germany) and Ra Europe Limited (based in the UK), is the United States Dollar. Accordingly, historical exchange rates are used to remeasure nonmonetary assets and liabilities and current exchange rates are used to remeasure monetary assets and liabilities at each reporting date. For transactions not denominated in the United States Dollar, net sales, costs and expenses are recorded at exchange rates that approximate the rates in effect on the transaction date. Transaction gains and losses generated from the remeasurement of monetary assets and liabilities denominated in currencies other than the functional currency of the subsidiary are included in "other income (expense)" in the consolidated statements of operations.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

    Cash Equivalents

        Cash equivalents consist primarily of money market funds and are reported at fair value. The Company considers all highly liquid investment instruments with a maturity when purchased of three months or less to be cash equivalents.

    Fair Value

        The Company's financial instruments consist of cash equivalents, billed and unbilled accounts receivable, accounts payable, accrued expenses, Preferred Stock Tranche Rights, Convertible Notes and features embedded in the Convertible Notes (Note 7). The carrying amount of billed and unbilled accounts receivable, accounts payable and accrued expenses are considered a reasonable estimate of their fair value, due to the short-term duration of these instruments.

        The Company is required to disclose information regarding all assets and liabilities reported at fair value that enables an assessment of the inputs used in determining the reported fair values. FASB ASC Topic 820, Fair Value Measurement and Disclosures ("ASC 820"), established a hierarchy of inputs used in measuring fair value that maximizes the use of observable inputs and minimizes the use of unobservable inputs by requiring that the observable inputs be used when available. Observable inputs are inputs that market participants would use in pricing the financial instrument based on market data obtained from sources independent of the Company. Unobservable inputs are inputs that reflect the Company's assumptions about the inputs that market participants would use in pricing the financial instrument and are developed based on the best information available in the circumstances.

        The accounting standard describes a fair value hierarchy based on three levels of inputs, of which the first two are considered observable and the last unobservable, that may be used to measure fair value, which are the following:

    Level 1 —Quoted prices in active markets that are accessible at the market date for identical unrestricted assets or liabilities.

    Level 2 —Inputs other than Level 1 that are observable, either directly or indirectly, such as quoted prices for similar assets or liabilities; quoted prices in markets that are not active; or other inputs for which all significant inputs are observable or can be corroborated by observable market data for substantially the full term of the assets or liabilities.

    Level 3 —Unobservable inputs that are supported by little or no market activity and that are significant to the fair value of the assets or liabilities.

        To the extent that valuation is based on models or inputs that are less observable or unobservable in the market, the determination of fair value requires more judgment. Accordingly, the degree of judgment exercised by the Company in determining fair value is greatest for instruments categorized in Level 3. A financial instrument's level within the fair value hierarchy is based on the lowest level of any input that is significant to the fair value measurement.

        Financial instruments measured at fair value on a recurring basis include cash equivalents, Preferred Stock Tranche Rights and bifurcated features embedded in the Convertible Notes (Note 7).

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

The fair value of Preferred Stock Tranche Rights and bifurcated features embedded in the Convertible Notes were determined based on Level 3 inputs as described in Note 3 and Note 7. An entity may elect to measure many financial instruments and certain other items at fair value at specified election dates. The Company did not elect to measure any additional financial instruments or other items at fair value.

        There have been no changes to the valuation methods utilized by the Company during the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016. The Company evaluates transfers between levels at the end of each reporting period. There were no transfers of financial instruments between levels during the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016.

    Concentrations of Credit Risk

        Financial instruments, which potentially subject the Company to concentrations of credit risk, consist principally of money market funds. The Company places these investments in highly rated financial institutions, and, by policy, limits the amounts of credit exposure to any one financial institution. These amounts at times may exceed federally insured limits. The Company has not experienced any credit losses in such accounts, and does not believe it is exposed to any significant credit risk on these funds.

        During the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016, the Company had one counterparty account for all of the Company's revenue and billed and unbilled receivables. There was no allowance for doubtful accounts in any periods presented.

    Accounts Receivable

        Accounts receivable as of December 31, 2014 and 2015, and as of June 30, 2016, represent amounts due from Merck under the terms of the Merck Agreement (Note 11). Reimbursable out-of-pocket expenses directly associated with the Company's research and development activities under the Merck Agreement that have been accrued at the end of the reporting period are not billed to Merck until third party invoices have been received. Unbilled accounts receivable were $48,000, $0 and $0 as of December 31, 2014 and 2015, and as of June 30, 2016, respectively, and are recorded as a component of prepaid expenses and other current assets on the accompanying consolidated balance sheets.

    Prepaid Expenses

        Prepaid expenses are valued at cost, and written down to net realizable value, when applicable.

    Property and Equipment

        Property and equipment is stated at cost, less accumulated depreciation. Major additions and betterments are capitalized; maintenance and repairs, which do not improve or extend the life of the

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

respective assets, are charged to operations as incurred. Depreciation is recorded using the straight line method over the estimated useful lives of the respective assets, which are as follows:

Asset
  Estimated useful life
Computer equipment and software   3 years
Furniture, fixtures, and other   5 years
Laboratory equipment   5 years
Leasehold improvements   Shorter of useful life or term of lease

    Deferred Public Offering Costs

        Deferred public offering costs, which primarily consist of consulting fees relating to the IPO, are capitalized within other non-current assets. The deferred offering costs will be offset against IPO proceeds upon the consummation of the offering. In the event that the offering is terminated, the deferred offering costs would be expensed immediately as a charge to operating expenses in the statement of operations. The Company has incurred $40,000 and $0.1 million in IPO costs as of December 31, 2015 and June 30, 2016, respectively, which are classified as a component of other non-current assets on the accompanying consolidated balance sheets.

    Deferred Financing Costs

        Deferred financing costs related to the issuance of Convertible Notes were amortized over the life of the related debt using the effective interest method. Unamortized deferred financing costs of $6,000 were recorded as a component of the loss upon extinguishment in the consolidated statement of operations when the Convertible Notes were settled in connection with the issuance of the Series B-1 Redeemable Convertible Preferred Stock ("Series B-1 Preferred Stock") in July 2015.

    Impairment of Long-lived Assets

        The Company reviews long-lived assets for impairment whenever events or changes in circumstances indicate that the carrying amount of the asset may not be recoverable. When such events occur, the Company compares the carrying amounts of the assets to their undiscounted expected future cash flows the assets are expected to generate and recognize an impairment loss equal to the excess of the carrying value over the fair value of the related asset. For the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016, no impairments have been recorded.

    Goodwill and Other Intangible Assets

        Goodwill is an asset representing the future economic benefits arising from other assets acquired in a business combination that are not individually identified and separately recognized. The Company allocates the cost of an acquired entity to the assets acquired and liabilities assumed based on their estimated fair values at the date of acquisition. The excess of the purchase price for acquisitions over the fair value of the net assets acquired, including other intangible assets, is recorded as goodwill. Goodwill is not amortized but is tested for impairment at least annually or more frequently when

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

events or circumstances occur that indicate that it is more likely than not that an impairment has occurred.

        In February 2011, the Company recorded goodwill of $0.2 million upon the acquisition of Cosmix. The Company's annual impairment testing date is December 31. The Company performed an assessment of the impairment of goodwill as of December 31, 2014 and 2015. In accordance with FASB ASU 2011-08, Intangibles—Goodwill and Other (Topic 350): Testing Goodwill for Impairment ("ASU 2011-08"), the Company assessed qualitative factors to determine whether it is more likely than not that the fair value of a reporting unit is less than its carrying amount which includes goodwill. There has been no impairment of goodwill for any periods presented.

        Other intangible assets acquired in a business combination were recognized at fair value using generally accepted valuation methods appropriate for the type of intangible asset and reported separately from goodwill. Intangible assets with definite lives are amortized over the estimated useful lives and are tested for impairment when events or circumstances occur that indicate that it is more likely than not that an impairment has occurred. The Company tests other intangible assets with definite lives for impairment by comparing the carrying amount to the sum of the net undiscounted cash flows expected to be generated by the asset whenever events or changes in circumstances indicate that the carrying amount of the asset may not be recoverable. If the carrying amount of the asset exceeds its net undiscounted cash flows, then an impairment loss is recognized for the amount by which the carrying amount exceeds its fair value. There has been no impairment of other intangible assets for any periods presented.

    Operating Leases

        The Company leases office facilities under various non-cancelable operating lease agreements. Certain lease agreements contain free or escalating rent payment provisions. The Company recognizes rent expense under such leases on a straight-line basis over the term of the lease with the difference between the expense and the payments recorded as deferred rent on the consolidated balance sheets. Any reimbursements by the landlord for tenant improvements are considered lease incentives, the balance of which is recorded as a lease incentive obligation within deferred rent on the consolidated balance sheets, and amortized over the life of the lease. Lease renewal periods are considered on a lease-by-lease basis in determining the lease term.

    Redeemable Convertible Preferred Stock

        The Company has classified convertible preferred stock as temporary equity in the consolidated balance sheets due to certain change in control clauses that are outside of the Company's control, including liquidation, sale, or transfer of control of the Company, as holders of the convertible preferred stock could cause redemption of the shares in these situations. The Company does not accrete the carrying values of the convertible preferred stock to the redemption values as such liquidation events are not considered probable of occurrence. Subsequent adjustments of the carrying values to the ultimate redemption values will be made only if and when it becomes probable that such a liquidation event will occur. Upon completion of a qualified IPO, as defined in the Company's certificate of incorporation, the convertible preferred stock will automatically convert to common stock.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

    Derivative Instruments

        Upon issuing financial instruments, the Company assesses whether the economic characteristics of embedded derivatives are clearly and closely related to the economic characteristics of the remaining component of the financial instruments (i.e., the host contracts) and whether a separate, non-embedded instrument with the same terms as the embedded instruments would meet the definition of a derivative instrument. When it is determined that (1) the embedded derivative possesses economic characteristics that are not clearly and closely related to the economic characteristics of the host contract and (2) a separate, stand-alone instrument with the same terms would qualify as a derivative instrument, the embedded derivative is separated from the host contract and carried at fair value with any changes in fair value recorded in current period earnings. In connection with the issuance of the Convertible Notes in April 2015, the Company identified certain embedded features which required separation under FASB ASC Topic 815, Derivatives and Hedging ("ASC 815"). See Note 7 for further discussion of these features embedded in the Convertible Notes.

    Revenue Recognition

        In general, the Company recognizes revenue when all of the following criteria are met: persuasive evidence of an arrangement exists; delivery has occurred or services have been rendered; the Company's price to the customer is fixed or determinable and collectability is reasonably assured.

        In April 2013, the Company has entered into a multi-target collaboration and license agreement with Merck Sharp & Dohme Corp. (Note 11), the Merck Agreement, to collaborate with Merck and use its proprietary drug discovery technology platform to identify certain peptides for targets nominated by Merck. The terms of this agreement contain multiple elements, including licenses and research and development services. Payments to the Company under this agreement include nonrefundable license fees, payments for research activities, payments based upon the achievement of certain milestones and royalties on any resulting net product sales. There are no performance, cancellation, termination or refund provisions in the arrangement that contain material financial consequences to the Company.

        In order to determine the accounting for such agreements, the Company identifies the deliverables included within the arrangement and evaluates which deliverables represent separate units of accounting based on whether certain criteria are met, including whether the delivered element has stand-alone value to the counterparty. The consideration received is then allocated among the separate units of accounting based on each unit's relative selling price. The identification of individual elements in a multiple-element arrangement and the estimation of the selling price of each element involve significant judgment, including consideration as to whether each delivered element has stand-alone value.

        Arrangement consideration allocated to license deliverables that represent separate units of accounting are recognized as revenue at the outset of the agreement assuming the general criteria for revenue recognition noted above have been met. Arrangement consideration allocated to license deliverables that do not represent separate units of accounting are deferred. Arrangement consideration allocated to research and development services that represent separate units of accounting are

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

recognized as the services are performed, assuming the general criteria for revenue recognition noted above have been met.

        The Merck Agreement includes contingent milestone payments related to specified preclinical and clinical development milestones and regulatory and commercialization/sales milestones. The Company generally considers non-refundable development, regulatory and commercialization/sales milestones that the Company expects to be achieved as a result of the Company's efforts during the period of the Company's performance obligations under the license and research agreements to be substantive and recognizes them as revenue upon the achievement of the milestone, assuming all other revenue recognition criteria are met. If such milestones are considered not to be substantive because the Company does not contribute effort to their achievement, the Company initially defers those milestone payments, allocates them to the units of accounting and recognizes them as revenue over the remaining term of those performance obligations. If no such performance obligation exists, milestone payments that are considered not to be substantive are generally recognized as revenue upon achievement, assuming all other revenue recognition criteria are met.

        The Company's license agreement includes a provision for the reimbursement of certain out-of-pocket expenses incurred in the performance of research and development services. The Company classifies reimbursements received for out-of-pocket expenses as revenue.

        Amounts received prior to satisfying the revenue recognition criteria are recorded as deferred revenue in the consolidated balance sheets.

    Research and Development Costs

        Costs incurred in the research and development of the Company's products are expensed to operations as incurred. Research and development expenses comprise costs incurred in performing research and development activities, including salaries and benefits, facilities cost, overhead costs, contract services including services provided by contract research organizations, and other outside costs.

        Non-refundable advance payments for goods or services to be received in the future for use in research and development activities are capitalized. The capitalized amounts are expensed as the related goods are delivered or the services are performed. If expectations change such that the Company does not expect it will need the goods to be delivered or the services to be rendered, capitalized non-refundable advance payments would be charged to expense.

        The Company bases its expense accruals related to research and development activities on estimates of the services received and efforts expended pursuant to the terms of its contractual arrangements. The financial terms of these agreements are subject to negotiation, vary from contract to contract and may result in uneven payment flows and expense recognition. Payments under some of these contracts depend on trial milestones. There may be instances in which payments made to vendors will exceed the level of services provided and result in a prepayment of the expense. In accruing service fees, the Company estimates the time period over which services will be performed and the level of effort to be expended in each period. If the actual timing of the performance of services or the level of effort varies from the estimate, the Company adjusts the accrual or prepaid expense accordingly.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

    Stock-Based Compensation

        The Company accounts for its stock-based compensation awards to employees and directors in accordance with FASB ASC Topic 718, Compensation-Stock Compensation ("ASC 718"). ASC 718 requires all stock-based payments to employees, including grants of employee stock options and restricted stock, to be recognized in the statements of operations based on their grant date fair values. For stock-based awards granted to employees, the Company allocates stock-based compensation expense on a straight-line basis based on the grant date fair value over the associated service period. Stock-based compensation is classified in the accompanying consolidated statements of operations in the department where the related services are provided. Stock-based awards to non-employees are recorded at their fair values, and are revalued at the end of each reporting period until the stock-based awards vest. Stock-based compensation expense related to non-employee stock-based awards is recognized over the related service period using an accelerated recognition model in accordance with the provisions of ASC 718 and FASB ASC Topic 505, Equity ("ASC 505").

        The Company estimates the fair value of its stock options using the Black-Scholes option pricing model, which requires the input of subjective assumptions, including (a) the expected stock price volatility, (b) the expected term of the award, (c) the risk-free interest rate, (d) expected dividends and (e) the estimated fair value of its Common Stock on the measurement date. Due to the lack of a public market for the trading of its Common Stock and a lack of Company specific historical and implied volatility data, the Company has based its estimate of expected volatility on the historical volatility of a group of similar companies that are publicly traded. When selecting these public companies on which it has based its expected stock price volatility, the Company selected companies with comparable characteristics to it, including enterprise value, risk profiles, position within the industry and with historical share price information sufficient to meet the expected term of the stock based awards. The Company computes historical volatility data using the daily closing prices for the selected companies' shares during the equivalent period of the calculated expected term of the stock-based awards. The Company will continue to apply this process until a sufficient amount of historical information regarding the volatility of its own stock price becomes available. Due to the lack of Company specific historical option activity, the Company has estimated the expected term of its employee stock options using the "simplified" method, whereby the expected term equals the arithmetic average of the vesting term and the original contractual term of the option. The expected term for nonemployee awards is the remaining contractual term of the option. The risk-free interest rates are based on the U.S. Treasury securities with a maturity date commensurate with the expected term of the associated award. The Company has never paid, and does not expect to pay dividends in the foreseeable future. Refer to Note 2, " Basis of Presentation and Use of Estimates ," for a discussion of the Company's estimated fair value of its Common Stock.

        The Company is also required to estimate forfeitures at the time of grant and revise those estimates in subsequent periods if actual forfeitures differ from its estimates. The Company uses historical data to estimate forfeitures and records stock-based compensation expense only for those awards that are expected to vest. To the extent that actual forfeitures differ from the Company's estimates, the differences are recorded as a cumulative adjustment in the period the estimates were revised. Stock-based compensation expense recognized in the financial statements is based on awards

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

that are ultimately expected to vest. Stock-based compensation expense associated with performance-based stock options is recognized if the achievement of the performance condition is considered probable using management's best estimates. See Note 12 for further details.

    Income Taxes

        Income taxes are recorded in accordance with FASB ASC Topic 740, Income Taxes ("ASC 740"), which provides for deferred taxes using an asset and liability approach. The Company records deferred tax assets and liabilities based on differences between financial reporting and tax bases of assets and liabilities which are measured using the enacted tax rates and laws that will be in effect when the differences are expected to reverse. Deferred tax assets are reduced by a valuation allowance if it is more likely than not that some portion or all of the deferred tax asset will not be realized.

        The Company accounts for uncertain tax positions in accordance with the provisions of ASC 740. When uncertain tax positions exist, the Company recognizes the tax benefit of tax positions to the extent that the benefit will more likely than not be realized. The determination as to whether the tax benefit will more likely than not be realized is based upon the technical merits of the tax position as well as consideration of the available facts and circumstances. As of December 31, 2014 and 2015, and June 30, 2016, the Company does not have any material uncertain tax positions. The Company's practice is to recognize interest and/or penalties related to uncertain tax positions in income tax expense. See Note 15 for further details.

    Tax Incentives

        The Company recognizes tax incentives when there is reasonable assurance that the Company will comply with the conditions attached to the tax incentive agreement and the tax incentive will be received. The Company evaluates the conditions of each individual tax incentive as of each reporting period to ensure that the Company has reached reasonable assurance of meeting the conditions of each tax incentive agreement and that it is expected that the tax incentive will be received as a result of meeting the necessary conditions. When tax incentives are related to reimbursements for cost of revenues or operating expenses, the tax incentives are recognized as a reduction of the related expense in the consolidated statements of operations when the related expense has been incurred.

        The Company records tax incentive receivables in the consolidated balance sheets in prepaid expenses and other current assets or long-term tax incentive receivable, depending on when the amounts are expected to be received from the funding agency.

    Comprehensive Income (Loss)

        Comprehensive income (loss) is defined as the change in equity of a business enterprise during a period from transactions and other events and circumstances from non-owner sources. Comprehensive loss was equal to net loss for all periods presented.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

    Net Loss Per Share Attributable to Common Stockholders

        Basic net loss per share attributable to common stockholders is calculated by dividing net loss attributable to common stockholders by the weighted average shares outstanding during the period, without consideration for Common Stock equivalents. During periods of income, the Company allocates participating securities a proportional share of income determined by dividing total weighted average participating securities by the sum of the total weighted average common shares and participating securities (the "two class method"). The Company's redeemable convertible preferred stock participates in any dividends declared by the Company and are therefore considered to be participating securities. Participating securities have the effect of diluting both basic and diluted earnings per share during periods of income. During periods of loss, the Company allocates no loss to participating securities because they have no contractual obligation to share in the losses of the Company. Diluted net loss per share attributable to common stockholders is calculated by adjusting weighted average shares outstanding for the dilutive effect of Common Stock equivalents outstanding for the period, determined using the treasury-stock and if-converted methods. For purposes of the diluted net loss per share attributable to common stockholders' calculation, Preferred Stock, stock options, warrants and the Convertible Notes are considered to be Common Stock equivalents but have been excluded from the calculation of diluted net loss per share attributable to common stockholders, as their effect would be anti-dilutive for all periods presented. Therefore, basic and diluted net loss per share were the same for all periods presented.

    Recent Accounting Pronouncements

        In May 2014, FASB issued ASU No. 2014-09, Revenue from Contracts with Customers ("ASU 2014-09"). ASU 2014-09 will replace existing revenue guidelines with a new model, in which revenue is recognized upon transfer of control over goods or services to a customer. In April 2015, the FASB proposed a deferral of the effective date of the new revenue recognition standard by one year, which would result in ASU 2014-09 becoming effective retrospectively for annual reporting periods beginning after December 15, 2017, and interim periods therein. At this time, the Company is currently evaluating the potential impact of ASU 2014-09 on its financial statements.

        In August 2014, the FASB issued ASU 2014-15, Presentation of Financial Statements—Going Concern (Subtopic 205-40): Disclosure of Uncertainties about an Entity's ability to Continue as a Going Concern ("ASU 2014-15"), which provides guidance in GAAP about management's responsibility to evaluate whether there is substantial doubt about an entity's ability to continue as a going concern and to provide related footnote disclosures. The amendments in ASU 2014-15 are effective for the annual reporting period ending after December 15, 2016 and for annual and interim periods thereafter. Early adoption is permitted. The Company is currently evaluating the potential impact of ASU 2014-15 on its financial statements.

        In April 2015, the FASB issued ASU 2015-03, Interest—Imputation of Interest (Subtopic 835-30): Simplifying the Presentation of Debt Issuance Costs ("ASU 2015-03"), which changes the presentation of debt issuance costs in financial statements. Under this authoritative guidance, an entity presents such costs in the balance sheet as a direct deduction from the related debt liability rather than as an asset.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

2. Summary of Significant Accounting Policies (Continued)

Amortization of the costs is reported as interest expense. The new guidance was effective for the Company beginning January 1, 2016 and applied on a retrospective basis. The adoption of ASU 2015-03 did not have a material impact on the Company's financial statements.

        In November 2015, the FASB issued ASU 2015-17, Income Taxes (Topic 740): Balance Sheet Classification of Deferred Taxes ("ASU 2015-17"), which changes the classification of deferred taxes in financial statements. This update requires that deferred tax liabilities and assets be classified as noncurrent on the balance sheet. The current requirement that deferred tax liabilities and assets of each jurisdiction of an entity be offset and presented as a single amount is not affected by the amendments in this update. The amendments in ASU 2015-17 are effective for annual periods beginning after December 15, 2016, and interim periods within those annual periods. Early adoption is permitted. The Company does not expect ASU 2015-17 to have an impact on its financial statements.

        On February 25, 2016, the FASB issued ASU 2016-02, Leases (Topic 842 ) ("ASU 2016-02"), which changes the presentation of assets and liabilities relating to leases. The core principle of Topic 842 is that a lessee should recognize the assets and liabilities that arise from leases. All leases create an asset and a liability for the lessee in accordance with FASB Concepts Statement No. 6, Elements of Financial Statements , and, therefore, recognition of those lease assets and lease liabilities represents an improvement over previous GAAP, which did not require lease assets and lease liabilities to be recognized for most leases. The provisions of this guidance are effective for annual periods beginning after December 15, 2018, and for interim periods therein. The Company has not yet assessed the impact of this new standard on its financial statements.

        In March 2016, the FASB issued ASU 2016-09, Stock Compensation (Topic 718) ("ASU 2016-09"), which is intended to simplify several aspects of the accounting for share-based payment award transactions. The guidance will be effective for the fiscal year beginning after December 15, 2016, including interim periods within that year. The Company has not yet assessed the impact of this new standard on its financial statements.

    Subsequent Events

        The Company considers events or transactions that occur after the balance sheet date but prior to the date the financial statements are available to be issued for potential recognition or disclosure in the financial statements. The Company has completed an evaluation of all subsequent events after the audited balance sheet date of December 31, 2015 through August 17, 2016, and after the unaudited balance sheet date of June 30, 2016 through August 17, 2016, the dates the financial statements were available to be issued, to ensure that this filing includes appropriate disclosure of events recognized in the financial statements as of December 31, 2015 and June 30, 2016, and events which occurred subsequently but were not recognized in the financial statements. See Note 17 for further details concerning events subsequent to the balance sheet date.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

3. Fair Value Measurements

        Below is a summary of assets and liabilities measured at fair value as of December 31, 2014 and 2015, and June 30, 2016, (in thousands):

 
  As of December 31, 2014  
 
  Quoted Prices
in Active
Markets
(Level 1)
  Significant
Observable
Inputs
(Level 2)
  Significant
Unobservable
Inputs
(Level 3)
  Total  

Financial Assets

                         

Cash equivalents—Money market funds

  $ 3,840   $   $   $ 3,840  

Total

  $ 3,840   $   $   $ 3,840  

 

 
  As of December 31, 2015  
 
  Quoted Prices
in Active
Markets
(Level 1)
  Significant
Observable
Inputs
(Level 2)
  Significant
Unobservable
Inputs
(Level 3)
  Total  

Financial Assets

                         

Cash equivalents—Money market funds

  $ 19,049   $   $   $ 19,049  

Total

  $ 19,049   $   $   $ 19,049  

Financial Liabilities

                         

Preferred stock tranche rights

  $   $   $ 2,620   $ 2,620  

Total

  $   $   $ 2,620   $ 2,620  

 

 
  As of June 30, 2016  
 
  Quoted Prices
in Active
Markets
(Level 1)
  Significant
Observable
Inputs
(Level 2)
  Significant
Unobservable
Inputs
(Level 3)
  Total  
 
  (Unaudited)
 

Financial Assets

                         

Cash equivalents—Money market funds

  $ 37,176   $   $   $ 37,176  

Total

  $ 37,176   $   $   $ 37,176  

        The Company's cash equivalents consist principally of money market funds. Cash equivalents are stated at fair value and consist of Level 1 financial instruments in the fair value hierarchy.

        Preferred Stock Tranche Rights are stated at fair value and are considered Level 3 inputs because their fair value measurement is based, in part, on significant inputs not observed in the market. The Company determined the fair value of Preferred Stock Tranche Rights as described in Note 9.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

4. Property and Equipment, net

        Property and equipment, net, consists of the following (in thousands):

 
  As of December 31,    
 
 
  As of
June 30,
2016
 
 
  2014   2015  
 
   
   
  (Unaudited)
 

Computer equipment and software

  $ 59   $ 71   $ 42  

Furniture, fixtures, and other

    62     62     361  

Laboratory equipment

    2,681     2,941     3,558  

Construction in progress

        535      

Leasehold improvements

    793     793     3,727  

    3,595     4,402     7,688  

Accumulated depreciation

    (1,432 )   (2,259 )   (1,720 )

Property and equipment, net

  $ 2,163   $ 2,143   $ 5,968  

        Depreciation expense for the years ended December 31, 2014 and 2015, and for the six months ended June 30, 2015 and 2016 was $0.6 million, $0.8 million, $0.4 million and $0.6 million, respectively.

5. Goodwill and Other Intangible Assets

        In February 2011, the Company recorded goodwill of $0.2 million upon the acquisition of Cosmix and its wholly-owned subsidiaries. Goodwill was $0.2 million as of December 31, 2014 and 2015, and June 30, 2016. There were no impairments recorded against goodwill in the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016. As of December 31, 2014 and 2015, the Company had one reporting unit consisting of Ra Pharmaceuticals, Inc. and Cosmix Verwaltungs GmbH. Based upon relevant qualitative considerations, the Company concluded that it was not more likely than not that the fair value of the Ra Pharmaceuticals, Inc. and Cosmix Verwaltungs GmbH reporting unit was less than its carrying amount, including goodwill. Accordingly, the Company determined that it was unnecessary to perform the two-step goodwill impairment test as of December 31, 2014 and 2015, and June 30, 2016.

        Intangible assets of $0.7 million arising from the acquisition of Cosmix in February 2011 are amortized and recorded as a component of research and development expense in the accompanying consolidated statements of operations on a straight-line basis over an estimated useful life of approximately nine years for acquired intellectual property. Amortization expense for each of the years ended December 31, 2014 and 2015 was $0.1 million, and for each of the six months ended June 30, 2015 and 2016 was $33,000.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

5. Goodwill and Other Intangible Assets (Continued)

        Estimated future amortization expense for intangible assets recorded by the Company as of December 31, 2015 is as follows (in thousands):

Years ending December 31,
  Amortization
Expense
 

2016

  $ 66  

2017

    66  

2018

    66  

2019

    66  

2020

    63  

Total amortization expense

  $ 327  

6. Accrued Expenses

        Accrued expenses consist of the following (in thousands):

 
  As of
December 31,
   
 
 
  As of
June 30,
2016
 
 
  2014   2015  
 
   
   
  (Unaudited)
 

Payroll and employee-related costs

  $ 71   $ 60   $ 560  

Research and development costs

    77     545     1,608  

Consulting costs

    174     122     253  

Professional fees

    84     62     112  

Other

    38     485     786  

Total

  $ 444   $ 1,274   $ 3,319  

7. Convertible Notes

        On April 1, 2015, the Company entered into a Convertible Note Purchase Agreement (the "Note Agreement") with the holders of its existing Series A Preferred Stock. Upon entering the Note Agreement, the Company issued Convertible Notes and warrants to purchase 1,559,070 shares of the Company's common shares. In connection with the issuance, the Company received gross proceeds of $5.0 million and incurred issuance costs of $6,000. The Convertible Notes bore interest at a rate of 8% per annum and were payable in full at the earliest of March 2018 ("Maturity Date"), an event of default as defined in the Note Agreement, or the sale of the Company. As discussed in more detail below, the notes and accrued interest thereon converted into shares of Series B-1 Preferred Stock on July 10, 2015.

        The Convertible Notes included certain features resulting in automatic conversion or possible early redemption. In the event the Company sold or issued shares ("Equity Securities") resulting in cash proceeds to the Company of no less than $5.0 million ("Qualified Financing"), the Convertible Notes would automatically convert into the Equity Securities at a conversion price equal to the price per

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

7. Convertible Notes (Continued)

share paid by the investors purchasing the Equity Securities. In the event of the Company undergoing a change in control prior to the Maturity Date, the Convertible Notes would automatically convert into the right to receive three times the outstanding principal, plus accrued interest. Lastly, the Convertible Notes included a put feature, at the option of the holders, whereby upon an event of default, repayment of the Convertible Notes could be accelerated in the amount of outstanding principal, plus accrued interest. Each of these three features were embedded derivatives that required bifurcation and accounting as liabilities to be measured at fair value at each reporting date.

        The embedded features requiring separate accounting were combined and valued upon issuance using a single income valuation approach. The Company estimated the fair value of the combined embedded derivative identified above using a "with and without" income valuation approach. Under this approach, the Company estimated the present value of the fixed interest rate debt based on the fair value of similar debt instruments excluding the embedded features. This amount was then compared to the fair value of the debt instrument including the embedded features using a probability weighted approach by assigning each embedded derivative feature a probability of occurrence, with consideration provided for the settlement amount including conversion terms, prepayment penalties, the expected life of the liability and the applicable discount rate.

        The Company recorded approximately $0.1 million as the fair value of the combined embedded derivative liability on April 1, 2015, resulting in a debt discount. The debt discount was being amortized as interest expense over the life of the Convertible Notes under the effective interest method prior to conversion. Changes in the estimated fair value of the embedded features were recorded as a component of other income (expense) in the consolidated statement of operations.

        As of April 1, 2015 and July 10, 2015, the Company ascribed a probability to the mandatory conversion feature upon a Qualified Financing of approximately 98% and 100%, respectively. As of April 1, 2015 and July 10, 2015 the Company ascribed a probability to the redemption feature upon a change in control of approximately 1% and 0%, respectively. For all other features included in the combined embedded derivative, the Company estimated a 1% and 0% probability of occurrence as of April 1, 2015 and July 10, 2015, respectively. The Company classified the liability within Level 3 of the fair value hierarchy as the probability factors are unobservable inputs and significant to the valuation model.

        On July 10, 2015, the Company received gross proceeds of approximately $24.1 million from the issuance of Series B-1 Preferred Stock to new and existing investors at a price per share of $0.92667. This transaction was a Qualified Financing and resulted in the automatic conversion of the notes into 5,512,743 shares of Series B-1 Preferred Stock at a conversion price of $0.92667 per share. Upon conversion, the Company recorded the difference between the fair value of the Series B-1 Preferred Stock issued and the carrying value of the Convertible Notes plus accrued interest as a $0.6 million loss on debt extinguishment in its consolidated statement of operations.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

7. Convertible Notes (Continued)

        The warrants issued in connection with the Convertible Notes may be exercised at any time for shares of common stock at an exercise price of $0.01 per share. The warrants expire in March 2022 and terminate automatically if not exercised prior to an IPO or other sale event. The Company estimated the fair value of these warrants as of the issuance date using a Black-Scholes option pricing model with the following assumptions:

 
  As of
April 1, 2015
 

Risk-free interest rate

    1.65 %

Expected dividend yield

    0 %

Expected term (in years)

    7.0  

Expected volatility

    86.0 %

        The proceeds from the Convertible Notes and warrants issuance were allocated between the notes and the warrants on a relative fair value basis. The Company allocated $0.5 million of the proceeds from the Convertible Notes to the common stock warrants and recognized this amount as additional paid-in capital with a corresponding debt discount upon issuance. As of June 30, 2016, the common stock warrants issued in connection with the Convertible Notes had not been exercised and remained outstanding.

8. Commitments and Contingencies

    Significant contracts and agreements

        In July 2009, the Company entered into an option agreement to acquire a license with an individual. The Company paid the individual $40,000 in cash upon signing the agreement. In July 2010, the Company extended the option agreement and paid the individual $30,000 in cash. In December 2010, the Company exercised its option and entered into an exclusive license agreement with the individual. The amount due upon signing of the exclusive license agreement was $0.2 million. After receiving credit for the previous option payments, the Company paid $0.1 million in connection with this license and is required to pay annual license payments of $15,000 per year until the expiration or abandonment of all related issued patents and pending patent applications. The Company is also obligated to pay royalties of 0.25% on net sales of licensed products sold or transferred by the Company. The Company paid annual license payments of $15,000, $15,000, $0 and $0 during the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016, under the terms of the exclusive license agreement.

        In April 2013, the Company entered into a multi-target collaboration and license agreement with Merck. Under the Merck Agreement, the Company will use its proprietary drug discovery technology platform to identify certain orally available cyclic peptides candidates for targets nominated by Merck. In addition, the Company will provide specific research and development services. See Note 11 for further details.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

8. Commitments and Contingencies (Continued)

    Lease commitments

        In September 2010, the Company entered into a lease for approximately 6,500 square feet of research and development laboratories and general office space in One Kendall Square, Cambridge, Massachusetts. In September 2012, the Company amended the original lease to provide for additional space of approximately 4,000 square feet in the same facility. The Company's lease expired on April 30, 2016.

        In September 2015, the Company entered into a new lease for approximately 27,000 square feet of research and development laboratories and general office space in 87 Cambridgepark Drive, Cambridge, Massachusetts. The lease commenced in September 2015 and expires in April 2023. The Company moved its operations to the space in April 2016.

        In connection with the new lease, the Company recorded a lease incentive obligation for reimbursable costs under a tenant improvement allowance provided by the landlord. As of December 31, 2015 and June 30, 2016, the Company has recorded a lease incentive obligation of $0.4 million and $2.7 million in deferred rent in the consolidated balance sheet.

        The Company has accounted for all facility leases as operating leases. Rent expense was $0.4 million and $0.6 million for the years ended December 31, 2014 and 2015, and $0.2 million and $0.6 million for the six months ended June 30, 2015 and 2016.

        Future minimum commitments due under these non-cancelable operating lease agreements as of December 31, 2015 are as follows (in thousands):

 
  Operating
Leases
 

Years ending December 31,

       

2016

  $ 868  

2017

    1,222  

2018

    1,358  

2019

    1,396  

2020

    1,435  

Thereafter

    3,502  

Total minimum lease payments

  $ 9,781  

    Restricted cash

        As of December 31, 2014 and 2015, and June 30, 2016, the Company had restricted cash of $0.1 million, $1.5 million and $1.3 million, respectively. As of December 31, 2014, restricted cash represented a letter of credit of $0.1 million for the Company's facility lease at One Kendall Square in Cambridge, Massachusetts. During the year ended December 31, 2015, restricted cash increased pursuant to a letter of credit of $1.4 million for the Company's facility lease at 87 Cambridgepark Drive in Cambridge, Massachusetts. During the six months ended June 30, 2016, restricted cash decreased pursuant to the return of $0.1 million letter of credit for the Company's facility lease at One

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

8. Commitments and Contingencies (Continued)

Kendall Square that expired during the period. Letters of credit are secured by cash equivalents held in a money market fund.

    Litigation

        The Company is not a party to any litigation and does not have contingency reserves established for any litigation liabilities.

9. Redeemable Convertible Preferred Stock

    Series A Preferred Stock

        In February 2010, the Company issued 12,887,999 shares of Series A Preferred Stock pursuant to the Series A Preferred Stock agreement at a price of $0.80176 per share, for gross proceeds of $9.7 million, and the conversion of the principal and accrued interest totaling $0.6 million related to convertible notes and incurred issuance costs of $0.2 million, (the "First Tranche"). Additionally, in accordance with the terms of the Series A Preferred Stock agreement, investors were granted the right to purchase up to an additional 21,552,566 shares of the Company's Series A Preferred Stock at a price of $0.80176, in two subsequent closings (the "Second Tranche" and "Third Tranche," respectively), upon the Company meeting certain milestone criteria by approval of the Board of Directors and approval of investors holding a majority of the Series A Preferred Stock (the "Series A Preferred Stock Tranche Rights").

        In February 2012, the Board of Directors waived certain Second Tranche milestone events provided for in the Series A Preferred Stock agreement and the Company issued 10,776,283 shares of Series A Preferred Stock at a price of $0.80176 for gross proceeds of $8.6 million and incurred issuance costs of $6,000.

        In March 2014, the Board of Directors waived certain Third Tranche milestone events provided for in the Series A Preferred Stock agreement and the Company issued 10,776,283 shares of Series A Preferred Stock at a price of $0.80176 for gross proceeds of $8.6 million and incurred issuance costs of $9,000.

        As of December 31, 2014 and 2015, and June 30, 2016, the total authorized, outstanding and issued Series A Preferred Stock of the Company was 34,440,565 shares.

    Series A Preferred Stock Tranche Rights

        The Company determined the right of the investors to purchase shares of Series A Preferred Stock in two future tranches met the definition of a freestanding financial instrument and was recognized as a liability at fair value upon the initial issuance of the First Tranche of Series A Preferred Stock in February 2010. The Company adjusted the carrying value of the Series A Preferred Stock Tranche Rights liability to its estimated fair value at each subsequent reporting date and immediately prior to the issuance of the Second and Third Tranche of Series A Preferred Stock through charges to other income (expense) in the consolidated statement of operations. Upon the closing of each tranche, the

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

9. Redeemable Convertible Preferred Stock (Continued)

marked-to-market fair value of the liability was included in the carrying value of Series A Preferred Stock issued.

        Immediately prior to the issuance of the Third Tranche of Series A Preferred Stock in March 2014, the Company adjusted the carrying value of the liability to its estimated fair value of $3.4 million and recorded the adjustment of $1.6 million within other income on the consolidated statements of operations. The fair value of the Third Tranche obligation was determined using the fair value of the Series A Preferred Stock under the guideline public company option-pricing method on the date of the issuance.

        During the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016 the Company recognized total other income of $1.6 million, $0, $0 and $0, respectively, related to changes in the fair value of the Series A Preferred Stock Tranche Rights.

    Series B Preferred Stock

        In July 2015, the Company issued 31,564,630 shares of Series B-1 Preferred Stock pursuant to the Series B Preferred Stock agreement at a price of $0.92667 per share for gross proceeds of $24.1 million and the conversion of the principal and accrued interest totaling $5.1 million related to the April 2015 Convertible Notes (Note 7) and incurred issuance costs of $0.2 million (the "Series B-1 Closing").

        Additionally, in accordance with the terms of the Series B Preferred Stock agreement, investors were granted the right to purchase up to an additional 29,362,452 shares of the Company's Series B-2 Preferred Stock ("Series B-2 Preferred Stock") at a price of $0.99617 (the "Series B-2 Preferred Stock Tranche Rights"), in any number of subsequent closings upon the request of each investor (the "Subsequent Closings") or in a mandatory closing upon the Company meeting certain milestone criteria by approval of the Board of Directors and certain investors (the "Mandatory Closing"). Upon consummation of a Mandatory Closing, if an investor fails to purchase the full amount of Series B-2 Preferred Stock allocated to the investor in the Series B Preferred Stock agreement at the Mandatory Closing, then all shares of Series A Preferred Stock and Series B Preferred Stock held by such investor will automatically be converted into shares of common stock of the Company initially on a one for one basis. In June 2016, the Board of Directors and required certain investors waived the milestone criteria and triggered the Mandatory Closing of the Series B-2 Preferred Stock.

        In June 2016, the Company issued 29,362,452 shares of Series B-2 Preferred Stock pursuant to the Series B Preferred Stock Agreement at a price of $0.99617 per share, for gross proceeds of $29.2 million and incurred issuance costs of $21,000 ("the Series B-2 Closing").

        The Company incurred $0.2 million of costs related to the issuance of the Series B-1 Preferred Stock. $17,000 of the Series B-1 Preferred Stock issuance costs were allocated to Preferred Stock Tranche Rights relating to the Series B-2 Preferred Stock upon issuance. The amount allocated to the Series B-1 Preferred Stock was offset against the proceeds upon closing of the issuance of the first tranche of Series B Preferred Stock. The amount allocated to the future tranche rights was recorded as an offset to the tranche right liability at issuance. The Company incurred $21,000 of costs related to the issuance of the Series B-2 Preferred Stock.

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Table of Contents


RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

9. Redeemable Convertible Preferred Stock (Continued)

        As of December 31, 2015 and June 30, 2016, the total authorized, outstanding and issued Series B-1 Preferred Stock of the Company was 31,564,630 shares. As of December 31, 2015, the total authorized Series B-2 Preferred Stock of the Company was 29,362,452 shares, and no shares were outstanding and issued. As of June 30, 2016, the total authorized, outstanding and issued Series B-2 Preferred Stock of the Company was 29,362,452 shares.

    Series B-2 Preferred Stock Tranche Rights

        The Company determined the right of the investors to purchase shares of Series B-2 Preferred Stock in a Subsequent Closing or in a Mandatory Closing met the definition of a freestanding financial instrument and was recognized as a liability at fair value upon the initial issuance of the Series B-1 Preferred Stock in July 2015.

        As of July 10, 2015 and December 31, 2015 and June 14, 2016, the Series B-2 Preferred Stock Tranche Rights liability had a fair value of $2.7 million, $2.6 million and $3.6 million, respectively. The fair value of the Series B-2 Preferred Stock Tranche Rights liability was determined using the probability-weighted present value of the benefit of the investment with the following assumptions:

 
  As of
July 10, 2015
  As of
December 31, 2015
  As of
June 14, 2016
 
 
   
   
  (Unaudited)
 

Probability of Series B-2 Preferred Stock closing

    85 %   80 %   100 %

Expected years until Series B-2 Preferred Stock closing

    0.7     0.5      

Discount rate

    18 %   19 %   0 %

Risk-free interest rate

    2.9 %   2.7 %   0.0 %

Expected dividend yield

    0 %   0 %   0 %

        The Company adjusted the carrying value of the Series B-2 Preferred Stock Tranche Rights liability to its estimated fair value at each reporting date subsequent to issuance and immediately prior to the issuance of the Series B-2 Preferred Stock on June 14, 2016 through charges to other income (expense) in the consolidated statement of operations. During the year ended December 31, 2015 and the six months ended June 30, 2016, the Company recognized total other income $0.1 million and total other expense of $1.0 million, respectively, related to changes in the fair value of the Series B-2 Preferred Stock Tranche Rights.

        The change in the carrying value of the Series A Preferred Stock Tranche Rights liability and the Series B-2 Preferred Stock Tranche Rights liability (collectively, the "Preferred Stock Tranche Rights")

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

9. Redeemable Convertible Preferred Stock (Continued)

on the consolidated balance sheets during the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016 was as follows:

 
  Year Ended
December 31,
  Six Months Ended
June 30,
 
 
  2014   2015   2015   2016  
 
   
   
  (Unaudited)
  (Unaudited)
 

Beginning Balance

    5,065             2,620  

Issuance of Series A Preferred Stock

    (3,430 )            

Issuance of Series B-2 Preferred Stock Tranche Rights

          2,694          

Change in Fair Value

    (1,635 )   (74 )       960  

Issuance of Series B-2 Preferred Stock

                (3,580 )

Ending Balance

        2,620          

        The Series B-2 Preferred Stock Tranche Rights liability was extinguished in June 2016 upon the issuance of the Series B-2 Preferred Stock. Immediately prior to the issuance of the Series B-2 Preferred Stock in June 2016, the Company adjusted the carrying value of the liability to its estimated fair value of $3.6 million.

    Series A Preferred Stock Amendment

        In July 2015, pursuant to the Series B Preferred Stock agreement, the Company's Series A Preferred Stockholders agreed to amend the terms of the Series A Preferred Stock such that the Series A Preferred Stock became subject to conversion in any event that such holder did not purchase 100% of their pro rata share of Series B-2 Preferred Stock in the Mandatory Closing of the Series B-2 Preferred Stock. Under the terms of the Mandatory Closing, holders of Series B-1 Preferred Stock were obligated to purchase 100% of their pro rata share of Series B-2 Preferred Stock after the applicable Mandatory Closing conditions were satisfied. In any event that such holder did not purchase 100% of their pro rata share of Series B-2 Preferred Stock, each share of Series A and Series B-1 Preferred Stock held by such holder was to be automatically be converted into shares of Common Stock at the applicable conversion price in effect. The Company determined that this amendment added a substantive contractual term to the Series A Preferred Stock and represented an extinguishment. Accordingly, the Company recorded an adjustment of $1.7 million to the carrying value of the Series A Preferred Stock to adjust the carrying value of the Series A Preferred Stock to its fair value on the date of the amendment through additional paid-in capital. All the Series A Preferred Stockholders purchased 100% of their pro rata share of Series B-2 Preferred Stock upon the Series B-2 Closing in June 2016 as such no conversions of Series A Preferred Stock occurred under the terms of this amendment.

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Table of Contents


RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

9. Redeemable Convertible Preferred Stock (Continued)

    General

        The Company's shares of Preferred Stock have the following rights, preferences, privileges, and restrictions:

    Dividends

        The holders of Series A and Series B Preferred Stock are entitled to receive non-cumulative dividends at the rate of $0.0641408 per share of Series A Preferred Stock, $0.0741336 per share of Series B-1 Preferred Stock, and $0.0796936 per share of Series B-2 Preferred Stock (subject to appropriate adjustment in the event of any stock dividend, stock split, combination or other similar recapitalization affecting such shares) per year of the base liquidation price in preference to any dividends on common stock, when, as, and if declared by the Board of Directors. No dividends have been declared through June 30, 2016.

    Voting

        The holders of Series A and Series B Preferred Stock are entitled to the number of votes equal to the number of common shares into which they are convertible.

    Liquidation

        In the event of any voluntary or involuntary liquidation, dissolution, or winding-up of the Company, the holders of shares of Series A, Series B-1, and Series B-2 Preferred Stock are entitled to receive, prior to and in preference to all common stockholders, an amount equal to $0.80176 per share, $0.92667 per share, and $0.99617 per share, respectively, plus any declared cumulative, unpaid dividends on such shares. After the payment of all preferential amounts, the remaining assets shall be distributed among the holders of the shares of Series A and Series B Preferred Stock and common stock pro rata based on the number of shares of common stock held by each, assuming conversion of the preferred stock into common stock. The holders of Series A, Series B-1 and Series B-2 preferred stock shall be entitled to receive, upon liquidation, the greater of (i) that amount per share, subject to a participation cap of $2.40528 per share, $2.78001 per share, and $2.98851 per share, respectively, or (ii) the amount such holder would receive if all shares of Preferred Stock had been converted to Common Stock immediately prior to such liquidation. A deemed liquidation event will occur if the Company enters into a merger or consolidation with another company, or sells substantially all of its assets.

    Conversion

        Each share of Series A and Series B Preferred Stock is initially convertible on a one for one basis into common stock. The conversion ratio is subject to adjustment for certain dilutive events, such as, but not limited to, stock splits and dividends. Conversion of Series A and Series B Preferred Stock is at the option of the holder; however, it is automatic upon the closing of an initial public offering, resulting in at least $40 million of gross proceeds, respectively, received by the Company, or at a date

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Table of Contents


RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

9. Redeemable Convertible Preferred Stock (Continued)

agreed to in writing by the holders of a majority of the outstanding shares of Series A and Series B Preferred Stock, at the then-effective conversion rates.

        Any holder of Series B-1 Preferred Stock was obligated to purchase 100% of the holder's allocated Series B-2 Preferred Stock at any Mandatory Closing after the applicable tranche closing conditions were satisfied and, if applicable, the tranche completion certificate had been delivered. In any event that such holder did not purchase 100% of their allocated Series B-2 Preferred Stock, each share of Series A and Series B Preferred Stock held by such holder would automatically be converted into shares of Common Stock at the applicable conversion price. Upon the Series B-2 Closing in June 2016, all holders of Series B-1 Preferred Stock purchased 100% of their allocated Series B-2 Preferred Stock.

10. Common Stock

        The Company was authorized to issue up to 42,000,000, as of December 31, 2014 and 125,000,000 as of December 31, 2015 and June 30, 2016, of common stock with a $0.001 par value per share. As of December 31, 2014 and 2015, and June 30, 2016, the Company had 3,316,409, 3,756,982 and 3,883,492 shares, respectively, of common stock issued and outstanding.

General

        The voting, dividend and liquidation rights of the holders of shares of Common Stock are subject to and qualified by the rights, powers and preferences of the holders of shares of Preferred Stock. The Common Stock has the following characteristics:

    Voting

        The holders of shares of Common stock are entitled to one vote for each share of Common Stock held at all meetings of stockholders and written action in lieu of meetings; there is no cumulative voting.

    Dividends

        The holders of shares of Common Stock are entitled to receive dividends, if and when declared by the Board of Directors. Cash dividends may not be declared or paid to holders of shares of Common Stock until paid on each series of outstanding Preferred Stock in accordance with their respective terms. As of December 31, 2015 and June 30, 2016, no dividends have been declared or paid since the Company's inception.

    Liquidation

        After payment to the holders of shares of Preferred Stock of their liquidation preferences, the holders of the Common Stock are entitled to share ratably in the Company's assets available for distribution to stockholders, in the event of any voluntary or involuntary liquidation, dissolution or winding up of the Company or upon the occurrence of a deemed liquidation event.

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

10. Common Stock (Continued)

Warrants

        In consideration of management services performed during the initial stages of the Company's formation, during 2010 the Company issued a warrant to purchase 80,000 shares of common stock at a price of $0.01 to a venture capital firm that is also a holder of Series A Preferred Stock. The warrant, which was fully exercisable upon issuance, was determined to have a fair value of $497 and was recorded as a component of the consolidated statement of stockholders' deficit. The warrant was fully exercised in February 2015.

        In addition, the Company issued a warrant to purchase 498 shares of common stock to an individual at a price of $0.01 in 2010. The fair value of the warrant was not material. The warrant expires on December 1, 2020. In December 2010, this warrant was partially exercised to purchase 124 shares of common stock. As of December 31, 2015 and June 30, 2016 the warrant to purchase 374 shares of common stock remained outstanding.

        On April 1, 2015, the Company issued warrants to purchase 1,559,070 shares of the Company's common shares in connection with the issuance of convertible notes. See Note 7 for further details. As of December 31, 2015 and June 30, 2016, all of the warrants remained outstanding.

Reserve for future issuance

        The Company has reserved for future issuances the following number of shares of Common Stock:

 
  As of December 31,    
 
 
  As of
June 30,
2016
 
 
  2014   2015  
 
   
   
  (Unaudited)
 

Conversion of Series A Preferred Stock

    34,440,565     34,440,565     34,440,565  

Conversion of Series B-1 Preferred Stock

        31,564,630     31,564,630  

Conversion of Series B-2 Preferred Stock

            29,362,452  

Stock-based compensation awards

    3,768,913     10,595,979     15,651,078  

Warrants to purchase Common Stock

    80,374     1,559,444     1,559,444  

Total

    38,289,852     78,160,618     112,578,169  

11. Revenue Recognition

    Merck Collaboration and License Agreement

        In April 2013, the Company entered into a multi-target collaboration and license agreement with Merck to use its proprietary drug discovery technology platform to identify orally available cyclic peptides for non-complement program targets nominated by Merck and provide specific research and development services. Under the agreement, the Company granted Merck licenses under certain of its intellectual property rights to manufacture, develop and commercialize compounds and products directed to selected program targets. The agreement consists of a research phase, where the Company and Merck collaborated on identifying and pre-clinically developing orally available cyclic peptides suitable for further development by Merck, and a development and commercialization phase pursuant

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

11. Revenue Recognition (Continued)

to which Merck has sole discretion and responsibility, including financial responsibility, for further development and commercialization of these peptides, on a program-by-program basis, from the collaboration. In April 2015, the Merck Agreement was amended to extend the research term of the collaboration to April 2016.

        At the signing of the Merck Agreement, Merck made an upfront non-refundable, technology license fee of $4.5 million to the Company. In addition, during the research term, which ended in April 2016, the Merck Agreement provided for reimbursement of research and development services provided by the Company in accordance with pre-specified limits for the number of the Company's full-time equivalent employees ("FTEs") working under the Merck Agreement. At the conclusion of the research term, Merck elected to continue the development of a non-complement cardiovascular target, for which the Company had received $3.5 million in preclinical milestone payments as of June 30, 2016.

        The Company has identified two deliverables in connection with the Merck Agreement: (1) rights to access the Company's technology platform for each program target, and (2) the research & development services provided during the research term. The Company has determined that none of the deliverables have standalone value. Since the separability criteria have not been met for any of the deliverables, the deliverables are being accounted for as a single combined unit of accounting at the outset of the arrangement.

        The Company has recognized revenue in connection with the upfront non-refundable license fee ratably over the research term of the Merck Agreement. Payments for research and development services and reimbursement for certain lab supplies and reagents have been recognized as services are performed, and milestone payments are recognized as these milestones are achieved, assuming all other revenue recognition criteria are met.

        The Company has determined that the $3.5 million in milestone payments received through June 30, 2016 were substantive in nature as they were commensurate with the enhancement of value under the Merck Agreement and because the Company concluded at the start of the collaboration that there was no certainty that these milestones would be successful. Accordingly, the Company has accounted for these milestone payments under the milestone method. The Company is entitled to receive future aggregate milestone payments of up to $61.5 million for the non-complement cardiovascular target selected, consisting of remaining preclinical and clinical milestones of $16.5 million, regulatory milestones of $19.0 million, and commercial milestones of $26.0 million, and low-to-mid single digit percentage royalties on future sales, if any. Following the end of the research term, any future milestone payments will be recognized as revenue upon achievement as no further performance obligations exist for the Company under the Merck Agreement.

        During the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016, the Company recognized revenue of $1.3 million, $1.0 million, $0.6 million and $1.2 million, respectively, related to upfront, non-refundable payments, and $3.2 million, $2.8 million, $1.5 million and $0.7 million, respectively, related to research and development services performed under the agreement. In addition, the Company also recognized approximately $0.4 million, $0.2 million, $0.1 million and $0.1 million in revenue related to reimbursable expenses under the terms of the Merck

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

11. Revenue Recognition (Continued)

Agreement during the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016, respectively. During the years ended December 31, 2014 and 2015 and the six months ended June 30, 2015 and 2016, we recognized $0, $0, $0 and $3.0 million, respectively, of revenue related to milestone payments.

        As of December 31, 2014 and 2015, and June 30, 2016, the Company had $2.7 million, $1.9 million and $0, respectively, of deferred revenue, and $0.1 million, $6,000 and $7,000, respectively, of billed and unbilled accounts receivable pursuant to the agreement with Merck. The Company concluded the billed and unbilled accounts receivable were fully recoverable as of December 31, 2014 and 2015, and June 30, 2016.

12. Stock Incentive Plan

        The Company maintains the 2010 Stock Incentive Plan (the "Plan") for employees, consultants, advisors, and directors. The Plan provides for the grant of incentive, non-qualified stock options and restricted stock grants as determined by the Board of Directors. The Company has reserved 17,469,249 shares of common stock under the Plan. As of December 31, 2015 and June 30, 2016, the Company has 4,751,082 and 5,887,181, respectively, of shares available for future issuance under the Plan. Shares of common stock issued upon exercise of stock options are generally issued from new shares of the Company. The Plan provides that the exercise price of incentive stock options cannot be less than 100% of the fair market value of the common stock on the date of the award for participants who own less than 10% of the total combined voting power of stock of the Company, and not less than 110% for participants who own more than 10% of the Company's voting power. Options and restricted stock granted under the Plan vest over periods as determined by the Board of Directors, which generally are equal to four years. Options generally expire ten years from the date of grant.

        Total stock-based compensation expense recorded in research and development and general and administrative expenses, respectively, for employees, directors and non-employees during the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016 is as follows (in thousands):

 
  Year Ended
December 31,
  Six Months Ended
June 30,
 
 
  2014   2015   2015   2016  
 
   
   
  (Unaudited)
  (Unaudited)
 

Research & development

  $ 58   $ 58   $ 49   $ 161  

General & administrative

    30     94     42     110  

Total

  $ 88   $ 152   $ 91   $ 271  

        As of December 31, 2014 and 2015, and June 30, 2016, the total unrecognized compensation expense related to non-vested, employee and non-employee director stock options, net of related forfeiture estimates, was $0.2 million, $1.2 million and $2.0 million, respectively. As of December 31, 2014 and 2015, and June 30, 2016, the total unrecognized compensation cost related to non-vested, non-employee stock options, net of related forfeiture estimates, was $21,000, $0, and $44,000,

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

12. Stock Incentive Plan (Continued)

respectively. The Company expects to recognize its remaining unrecognized stock-based compensation expense over a weighted-average period of approximately three years. The weighted-average grant date fair value per share for awards granted during the years ended December 31, 2014 and 2015, and six months ended June 30, 2015 and 2016, was $0.28, $0.27, $0.28 and $0.30, respectively.

        The fair value of each stock option granted to employees and directors was estimated on the date of grant using the Black-Scholes option-pricing model, with the following range of assumptions for the years ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016:

 
  Year ended December 31,   Six Months Ended June 30,
 
  2014   2015   2015   2016
 
   
   
  (Unaudited)
  (Unaudited)

Risk free interest rate

  1.76% - 1.88%   1.76% - 1.86%     1.76 % 1.23% - 1.59%

Expected dividend yield

         

Expected term (in years)

  5.9 - 6.1   5.9 - 6.1     6.0   6.0 - 6.4

Expected volatility

  76.4% - 79.9%   72.3% - 74.7%     72.3 % 74.1% - 77.3%

        The following table summarizes the activity of the Company's stock option plan for the years ended December 31, 2014 and 2015, and six months ended June 30, 2016, (intrinsic values in thousands):

 
  Number of
Shares
  Weighted-
Average
Exercise Price
  Average
Remaining
Contractual
Life (in years)
  Aggregate
Intrinsic Value
 

Outstanding at December 31, 2014

    2,036,824   $ 0.26     8.8   $ 306  

Granted

    4,594,168   $ 0.41              

Exercised

    (360,573 ) $ 0.23              

Cancelled or forfeited

    (425,522 ) $ 0.25              

Outstanding at December 31, 2015

    5,844,897   $ 0.38     9.1   $ 174  

Granted

    4,075,000   $ 0.41              

Exercised

    (126,510 ) $ 0.34              

Cancelled or forfeited

    (29,490 ) $ 0.41              

Outstanding at June 30, 2016 (Unaudited)

    9,763,897   $ 0.39     9.1   $ 1,629  

Exercisable at December 31, 2015

    857,368   $ 0.25     5.4   $ 141  

Vested or expected to vest at December 31, 2015

    5,351,651   $ 0.38     9.1   $ 172  

Exercisable at June 30, 2016 (Unaudited)

    1,481,940   $ 0.31     6.7   $ 366  

Vested or expected to vest at June 30, 2016 (Unaudited)

    9,059,641   $ 0.39     9.1   $ 1,523  

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

12. Stock Incentive Plan (Continued)

        The total intrinsic value of options exercised during the years ended December 31, 2014 and 2015 and the six months ended June 30, 2015 and 2016 was $0.1 million, $0.1 million, $0 and $9,000, respectively.

    Stock Option Grants to Non-Employees

        During the year ended December 31, 2014 and 2015, and the six months ended June 30, 2015 and 2016, the Company granted 160,000, 140,000, 100,000 and 200,000, respectively of non-qualified stock options to non-employees, excluding grants to non-employee directors. The unvested shares held by non-employees are revalued using the Company's estimate of fair value at each reporting period through the remaining vesting period. Stock-based compensation expense related to stock option grants to non-employees during the years ended December 31, 2014 and 2015, and six months ended June 30, 2015 and 2016 was $30,000, $0.1 million, $45,000 and $42,000, respectively. The fair value of each non-qualified stock option granted to non-employees was estimated on the date of grant and at each revaluation date using the Black-Scholes option-pricing model, with the following range of assumptions, excluding performance-based awards, during the years ended December 31, 2014 and 2015, and six months ended June 30, 2015 and 2016:

 
  Year Ended December 31,   Six Months Ended June 30,
 
  2014   2015   2015   2016
 
   
   
  (Unaudited)
  (Unaudited)

Risk free interest rate

  2.15% - 2.18%   1.93% - 2.31%   1.93% - 2.31%   1.46% - 1.76%

Expected dividend yield

       

Expected term (in years)

  9.9 - 10.0   9.2 - 10.0   9.2 - 10.0   9.7 - 10.0

Expected volatility

  75.1% - 75.3%   75.1% - 79.9%   75.3% - 79.9%   78.4% - 81.0%

    Performance-based Stock Options

        In December 2015, the Company granted 40,000 non-qualified stock options to a non-employee consultant of the Company, which contain performance-based vesting criteria. Milestone events are specific to the Company's development and progression in clinical trial studies. Stock-based compensation expense associated with these performance-based stock options is recognized if the achievement of the performance condition is considered probable using management's best estimates. As of December 31, 2015, management determined that it was not probable these conditions would be met, and therefore no stock-based compensation expense relating to performance-based awards was recorded. As of June 30, 2016, management determined these conditions were met, and therefore stock-based compensation expense relating to this performance-based award was recorded during the six months ended June 30, 2016.

        In February 2016, the Company granted 205,000 shares of qualified stock options to an employee of the Company. Vesting of the stock option award only commences upon the occurrence of a Trigger Event, which is defined in the employee's equity agreement as the consummation of either (i) an initial public offering of the Company's common stock and (ii) a private placement financing, in one or a series of related closings, resulting in gross proceeds to the Company of at least $20 million (the

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

12. Stock Incentive Plan (Continued)

"Trigger Event"). Stock-based compensation expense associated with these performance-based stock options is recognized if the achievement of the performance condition is considered probable using management's best estimates. As of June 30 2016, management determined that it was not probable the Trigger Event would be met, and therefore stock-based compensation expense relating to this performance-based award was not recorded during the six months ended June 30, 2016.

13. 401(k) Savings Plan

        In 2010, the Company adopted a tax-qualified employee savings and retirement 401(k) Plan, covering all qualified employees. Eligible employees may make pretax contributions to the 401(k) Plan up to statutory limits. At the election of its Board, the Company may elect to match employee contributions, but has not done so since inception through June 30, 2016.

14. Changes in Accumulated Other Comprehensive Income (Loss)

        During the year ended December 31, 2014, the Company reclassified $17,000 of accumulated other comprehensive income (loss) to net loss. This reclassification adjustment related to translation losses realized upon the complete liquidation of Cosmix Molecular Biologicals GmbH on March 18, 2014.

        The $17,000 of translation losses realized upon the liquidation of Cosmix Molecular Biologicals GmbH during the year ended December 31, 2014 were recorded to "Other income (expense)" in the consolidated statement of operations.

15. Income Taxes

        The following table presents domestic and foreign components of loss before income taxes for the periods presented (in thousands):

 
  Year Ended
December 31,
 
 
  2014   2015  

Domestic

  $ (5,478 ) $ (13,961 )

Foreign

    (25 )   (1 )

Loss from operations before benefits from income taxes

  $ (5,503 ) $ (13,962 )

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

15. Income Taxes (Continued)

        The benefit from income taxes consists of the following components:

 
  Year Ended
December 31
 
 
  2014   2015  

Current income tax benefit:

             

Federal

  $   $  

State

         

Foreign

         

Total current income tax benefit

         

Deferred income tax benefit:

             

Federal

         

State

         

Foreign

    27     19  

Total income tax benefit

  $ 27   $ 19  

        A reconciliation setting forth the differences between the effective tax rate of the Company for the periods ended December 31, 2014 and 2015 and the U.S. federal statutory tax rate is as follows:

 
  Year Ended
December 31
 
 
  2014   2015  

Income tax benefit at federal statutory rate

  $ (1,872 ) $ (4,749 )

State and local income taxes net of federal tax benefit

    (289 )   (737 )

Foreign tax rate differential

    1      

Nondeductible / nontaxable permanent items

    (595 )   272  

Tax credits

    (546 )   (857 )

Other

    (234 )   7  

Change in valuation allowance

    3,508     6,045  

Income tax benefit

  $ (27 ) $ (19 )

Effective tax rate

    0.49 %   0.14 %

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

15. Income Taxes (Continued)

        The significant components of the Company's deferred tax assets are as follows (in thousands):

 
  Year Ended
December 31
 
 
  2014   2015  

Deferred tax assets:

             

Federal net operating losses

  $ 5,412   $ 8,844  

R&D credits

    1,380     2,237  

License payments book expense

    244     225  

Intangible assets and amortization

    26     23  

Accrued expense & other

    65     326  

Equity compensation

    4     26  

Capitalized R&D costs

    3,132     4,819  

Deferred revenue

    379     95  

Foreign net operating losses

    18     18  

Total deferred tax assets

    10,660     16,613  

Deferred tax liabilities:

             

Depreciation

    (73 )   19  

Purchased intangibles

    (114 )   (95 )

Total deferred tax liabilities

    (187 )   (76 )

Valuation allowance

    (10,569 )   (16,614 )

Net deferred tax liability

  $ (96 ) $ (77 )

        As of December 31, 2014 and 2015, the Company had federal net operating loss carryforwards of $14.0 million and $22.8 million, respectively, and state net operating loss carryforwards of $12.2 million and $20.5 million, respectively. The net operating loss carryforwards expire at various dates beginning in 2029 through 2035 for United States federal and state purposes. As of December 31, 2014 and 2015, respectively, the Company has trade net operating loss carryforwards of $0.1 million and $0.1 million, at the Cosmix Verwaltungs GmbH subsidiary in Germany. There is no expiration of the German net operating loss carryforwards.

        Management assesses the available positive and negative evidence to estimate whether sufficient future taxable income will be generated to permit use of the existing deferred tax assets. A significant piece of objective negative evidence evaluated was the cumulative losses incurred over the three-year period ended December 31, 2015. Such objective evidence limits the ability to consider other subjective evidence, such as our projections for future growth.

        On the basis of this evaluation, as of December 31, 2014 and December 31, 2015, a valuation allowance of $10.6 million and $16.6 million has been recorded to recognize only the portion of the deferred tax asset that is more likely than not to be realized. The amount of the deferred tax asset considered realizable, however, could be adjusted if estimates of future taxable income during the carryforward period are reduced or increased or if objective negative evidence in the form of

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

15. Income Taxes (Continued)

cumulative losses is no longer present and additional weight is given to subjective evidence such as our projections for growth.

        As of December 31, 2014 and 2015, the Company also had available research and development credits for federal income tax purposes of $1.0 million and $1.5 million, respectively, and available research and development credits for state income tax purposes of $0.6 million and $1.0 million, respectively. If not utilized, the available research and development credits for federal and state income tax purposes expire at various dates through 2034 and 2030, respectively.

        The Company has not, as yet, conducted a study of its research and development credit carryforwards. This study may result in an adjustment to the Company's research and development credit carryforwards; however, until a study is completed and any adjustment is known, no amounts are being presented as an uncertain tax position. A full valuation allowance has been provided against the Company's research and development credits and, if an adjustment is required, this adjustment would be offset by an adjustment to the valuation allowance.

        Under the provisions of Section 382 of the Internal Revenue Code of 1986, certain substantial changes in the Company's ownership, including a sale of the Company, or significant changes in ownership due to sales of equity, may have limited, or may limit in the future, the amount of net operating loss carryforwards and tax credits, which could be used annually to offset future taxable income.

        With the exception of the deferred tax assets recorded at Cosmix Verwaltungs GmbH, a full valuation allowance for the net deferred tax asset has been recorded in the accompanying consolidated financial statements to offset the deferred tax assets because it is more likely than not that all of the deferred tax asset will not be realized. This determination is based primarily on historical losses, without considering the impact of any potential upturn in the Company's business. Accordingly, future favorable adjustments to the valuation allowance may be required, if and when circumstances change.

        The Company's reserves related to taxes are based on a determination of whether and how much of a tax benefit taken by the Company in its tax filings or positions is more likely than not to be realized following resolution of any potential contingencies present related to the tax benefit. The Company recognized no material adjustment for unrecognized income tax benefits. The Company will recognize interest and penalties related to uncertain tax positions in income tax expense. As of December 31, 2015, the Company had no unrecognized tax benefits and no accrued interest or penalties related to uncertain tax positions.

        The Company files income tax returns in the U.S. federal, Massachusetts and foreign jurisdictions. The statute of limitations for assessment by the Internal Revenue Service and state tax authorities remains open for all years since the Company's inception.

16. Net loss Per Share Attributable to Common Stockholders

        As described in Note 2, the Company computes basic and diluted earnings (loss) per share using a methodology that gives effect to the impact of outstanding participating securities (the "two-class method"). As each of the years ended December 31, 2014 and 2015, and the six months ended June 30,

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

16. Net loss Per Share Attributable to Common Stockholders (Continued)

2015 and 2016 resulted in net losses, there is no income allocation required under the two-class method or dilution attributed to weighted average shares outstanding in the calculation of diluted loss per share.

        Basic and diluted net loss per common share are calculated as follows:

 
  Year Ended
December 31,
  Six Months Ended
June 30,
 
 
  2014   2015   2015   2016  
 
   
   
  (Unaudited)
  (Unaudited)
 

Numerator:

                         

Net loss

  $ (5,476 ) $ (13,943 ) $ (5,448 ) $ (9,862 )

Net loss attributable to participating preferred stock

                 

Gain on extinguishment of redeemable convertible preferred shares

        1,673          

Net loss attributable to common stockholders—basic and diluted

  $ (5,476 ) $ (12,270 ) $ (5,448 ) $ (9,862 )

Denominator:

                         

Weighted-average common shares used in net loss per share attributable to common stockholders—basic and diluted

    3,077,293     3,479,651     3,377,647     3,768,332  

Net loss per share attributable to common stockholders—basic and diluted

  $ (1.78 ) $ (3.53 ) $ (1.61 ) $ (2.62 )

        The following Common Stock equivalents, presented on an as converted basis, were excluded from the calculation of net loss per share for the periods presented, due to their anti-dilutive effect:

 
  Year Ended
December 31,
  Six Months Ended
June 30,
 
 
  2014   2015   2015   2016  
 
   
   
  (Unaudited)
  (Unaudited)
 

Convertible preferred stock

    34,440,565     66,005,195     34,440,565     95,367,647  

Common stock warrants

    80,374     1,559,444     1,559,444     1,559,444  

Outstanding stock options

    2,036,824     5,844,897     2,367,729     9,763,897  

Total

    36,557,763     73,409,536     38,367,738     106,690,988  

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RA PHARMACEUTICALS, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Information as of June 30, 2016 and for the six
months ended June 30, 2015 and 2016 is unaudited)

16. Net loss Per Share Attributable to Common Stockholders (Continued)

        A reconciliation of the numerator and denominator used in the calculation of unaudited pro forma basic and diluted net loss income per share is as follows:

 
  Year Ended
December 31, 2015
  Six Months Ended
June 30, 2016
 
 
   
  (Unaudited)
 

Numerator:

             

Net loss attributable to common stockholders

  $ (12,270 ) $ (9,862 )

Add: Interest and accretion of discount on convertible notes

    159      

Add: Loss on debt extinguishment

    602      

Add: Extinguishment of Preferred Stock Tranche Rights liability

    2,620      

Less: Gain on extinguishment of redeemable convertible preferred shares

    (1,673 )    

Add: Loss on change in fair value of Preferred Stock Tranche Rights liability

        960  

Less: Gain on change in fair value of Preferred Stock Tranche Rights liability

    (74 )    

Less: Gain on change in fair value of derivative liability

    (98 )    

Pro forma net loss attributable to common stockholders—basic and diluted

  $ (10,734 ) $ (8,902 )

Denominator:

             

Weighted-average number of common shares used in earnings (loss) per share—basic & diluted

    3,479,651     3,768,332  

Add: adjustment to reflect assumed effect of conversion of convertible preferred stock and exercise of warrants

    50,564,199     69,774,719  

Pro forma weighted-average number of common shares used in earnings (loss) per share—basic & diluted

    54,043,850     73,543,051  

Pro forma net loss per share attributable to common stockholders—basic and diluted

  $ (0.20 ) $ (0.12 )

17. Subsequent Events:

        The Company evaluated subsequent events for financial statement purposes through August 17, 2016, the date on which the consolidated December 31, 2015 financial statements were originally issued. For the six months ended June 30, 2016, the Company evaluated subsequent events through August 17, 2016, the date on which the interim financial statements were issued.

        In August 2016, the Company granted 6,020,000 stock options to employees at an exercise price of $0.80 per award under the 2010 Stock Option and Grant Plan.

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LOGO

        Through and including                    , 2016 (25 days after the commencement of this offering), all dealers effecting transactions in these securities, whether or not participating in this offering, may be required to deliver a prospectus. This delivery requirement is in addition to the obligation of dealers to deliver a prospectus when acting as underwriters and with respect to their unsold allotments or subscriptions.


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PART II

Information Not Required in Prospectus

Item 13.    Other Expenses of Issuance and Distribution.

        The following table sets forth the fees and expenses, other than underwriting discounts and commissions, payable in connection with the registration of the common stock hereunder. All amounts are estimates except the SEC registration fee.

 
  Amount
to be Paid
 

SEC registration fee

  $ 8,686  

FINRA filing fee

      *

NASDAQ Global Market listing fee

      *

Printing and mailing

      *

Legal fees and expenses

      *

Accounting fees and expenses

      *

Transfer agent and registrar fees and expenses

      *

Miscellaneous

      *

Total

  $   *

*
To be completed by amendment.

Item 14.    Indemnification of Directors and Officers.

        Section 145 of the Delaware General Corporation Law (the "DGCL") authorizes a corporation to indemnify its directors and officers against liabilities arising out of actions, suits and proceedings to which they are made or threatened to be made a party by reason of the fact that they have served or are currently serving as a director or officer to a corporation. The indemnity may cover expenses (including attorneys' fees) judgments, fines and amounts paid in settlement actually and reasonably incurred by the director or officer in connection with any such action, suit or proceeding. Section 145 permits corporations to pay expenses (including attorneys' fees) incurred by directors and officers in advance of the final disposition of such action, suit or proceeding. In addition, Section 145 provides that a corporation has the power to purchase and maintain insurance on behalf of its directors and officers against any liability asserted against them and incurred by them in their capacity as a director or officer, or arising out of their status as such, whether or not the corporation would have the power to indemnify the director or officer against such liability under Section 145.

        We have adopted provisions in our certificate of incorporation to be in effect upon the closing of this offering and bylaws to be in effect upon the effectiveness of this registration statement that limit or eliminate the personal liability of our directors to the fullest extent permitted by the DGCL, as it now exists or may in the future be amended. Consequently, a director will not be personally liable to us or our stockholders for monetary damages or breach of fiduciary duty as a director, except for liability for:

    any breach of the director's duty of loyalty to us or our stockholders;

    any act or omission not in good faith or that involves intentional misconduct or a knowing violation of law;

    any unlawful payments related to dividends or unlawful stock purchases, redemptions or other distributions; or

    any transaction from which the director derived an improper personal benefit.

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        These limitations of liability do not alter director liability under the federal securities laws and do not affect the availability of equitable remedies such as an injunction or rescission.

        In addition, our bylaws provide that:

    we will indemnify our directors, officers and, in the discretion of our board of directors, certain employees to the fullest extent permitted by the DGCL, as it now exists or may in the future be amended; and

    we will advance reasonable expenses, including attorneys' fees, to our directors and, in the discretion of our board of directors, to our officers and certain employees, in connection with legal proceedings relating to their service for or on behalf of us, subject to limited exceptions.

        We have entered into indemnification agreements with each of our directors and intend to enter into such agreements with certain of our executive officers. These agreements provide that we will indemnify each of our directors, certain of our executive officers and, at times, their affiliates to the fullest extent permitted by Delaware law. We will advance expenses, including attorneys' fees (but excluding judgments, fines and settlement amounts), to each indemnified director, executive officer or affiliate in connection with any proceeding in which indemnification is available and we will indemnify our directors and officers for any action or proceeding arising out of that person's services as a director or officer brought on behalf of us or in furtherance of our rights. Additionally, certain of our directors or officers may have certain rights to indemnification, advancement of expenses or insurance provided by their affiliates or other third parties, which indemnification relates to and might apply to the same proceedings arising out of such director's or officer's services as a director referenced herein. Nonetheless, we have agreed in the indemnification agreements that our obligations to those same directors or officers are primary and any obligation of such affiliates or other third parties to advance expenses or to provide indemnification for the expenses or liabilities incurred by those directors are secondary.

        We also maintain general liability insurance which covers certain liabilities of our directors and officers arising out of claims based on acts or omissions in their capacities as directors or officers, including liabilities under the Securities Act of 1933, as amended (the "Securities Act").

        The underwriting agreement filed as Exhibit 1.1 to this registration statement provides for indemnification of us and our directors and officers by the underwriters against certain liabilities under the Securities Act and the Securities Exchange Act of 1934.

Item 15.    Recent Sales of Unregistered Securities.

        In the three years preceding the filing of this registration statement, we have issued the following securities that were not registered under the Securities Act:

    (a)
    Issuances of Capital Stock

        In April 2015, we entered into a convertible note purchase agreement, pursuant to which we issued and sold to four investors an aggregate principal amount of $5.0 million of convertible promissory notes, or the 2015 notes, and warrants to purchase an aggregated of 1,559,070 shares of our common stock at an exercise price of $0.01 per share. All of the convertible promissory notes have been used as consideration by the investors to purchase our Series B-1 convertible preferred stock in July 2015.

        In July 2015, we issued an aggregate of 31,564,630 shares of our Series B-1 convertible preferred stock to 11 investors for aggregate consideration of approximately $29.2 million.

        In June 2016, we issued an aggregate of 29,362,452 shares of our Series B-2 convertible preferred stock to 11 investors for aggregate consideration of approximately $29.2 million.

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        No underwriters were involved in the foregoing sales of securities. Unless otherwise stated, the sales of securities described above were deemed to be exempt from registration pursuant to Section 4(a)(2) of the Securities Act, including Regulation D and Rule 506 promulgated thereunder, as transactions by an issuer not involving a public offering. All of the purchasers in these transactions represented to us in connection with their purchase that they were acquiring the securities for investment and not distribution, that they could bear the risks of the investment and could hold the securities for an indefinite period of time. Such purchasers received written disclosures that the securities had not been registered under the Securities Act and that any resale must be made pursuant to a registration or an available exemption from such registration. All of the foregoing securities are deemed restricted securities for the purposes of the Securities Act.

    (b)
    Grants and Exercises of Stock Options

        We have granted stock options to purchase an aggregate of 16,223,368 shares of our common stock, with exercise prices ranging from $0.24 to $0.80 per share, to employees, directors and consultants pursuant to the 2010 Plan. Since June 30, 2013, 935,369 shares of common stock have been issued upon the exercise of stock options pursuant to the 2010 Plan.

        The issuances of the securities described above were deemed to be exempt from registration pursuant to Section 4(a)(2) of the Securities Act or Rule 701 promulgated under the Securities Act as transactions pursuant to compensatory benefit plans. The shares of common stock issued upon the exercise of options are deemed to be restricted securities for purposes of the Securities Act.

Item 16.    Exhibits and Financial Statement Schedules.

        The exhibits to the registration statement are listed in the Exhibit Index to this registration statement and are incorporated herein by reference.

Item 17.    Undertakings.

        Insofar as indemnification for liabilities arising under the Securities Act of 1933, as amended, or the Act, may be permitted to directors, officers and controlling persons of the Registrant pursuant to the foregoing provisions, or otherwise, the Registrant has been advised that in the opinion of the Securities and Exchange Commission such indemnification is against public policy as expressed in the Act and is therefore unenforceable. In the event that a claim for indemnification against such liabilities (other than the payment by the Registrant of expenses incurred or paid by a director, officer or controlling person of the Registrant in the successful defense of any action, suit or proceeding) is asserted by such director, officer or controlling person in connection with the securities being registered, the Registrant will, unless in the opinion of its counsel the matter has been settled by controlling precedent, submit to a court of appropriate jurisdiction the question whether such indemnification by it is against public policy as expressed in the Act and will be governed by the final adjudication of such issue.

        The Registrant hereby undertakes that:

    (a)
    The Registrant will provide to the underwriter at the closing as specified in the underwriting agreement, certificates in such denominations and registered in such names as required by the underwriter to permit prompt delivery to each purchaser.

    (b)
    For purposes of determining any liability under the Securities Act of 1933, as amended, the information omitted from a form of prospectus filed as part of this registration statement in reliance upon Rule 430A and contained in the form of prospectus filed by the Registrant pursuant to Rule 424(b)(1) or (4) or 497(h) under the Securities Act of 1933, as amended,

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      shall be deemed to be part of this registration statement as of the time it was declared effective.

    (c)
    For the purpose of determining any liability under the Securities Act of 1933, as amended, each post-effective amendment that contains a form of prospectus shall be deemed to be a new registration statement relating to the securities offered therein, and the offering of such securities at that time shall be deemed to be the initial bona fide offering thereof.

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SIGNATURES

        Pursuant to the requirements of the Securities Act of 1933, the registrant has duly caused this Registration Statement on Form S-1 to be signed on its behalf by the undersigned, thereunto duly authorized, in the City of Cambridge, Commonwealth of Massachusetts, on the 13th day of October, 2016.

    RA PHARMACEUTICALS, INC.

 

 

By:

 

/s/ DOUGLAS A. TRECO

Douglas A. Treco, Ph.D.
President, Chief Executive Officer and Principal Executive Officer

        Pursuant to the requirements of the Securities Act of 1933, as amended, this Registration Statement and Power of Attorney has been signed by the following person in the capacities and on the date indicated.

Name
 
Title
 
Date

 

 

 

 

 
/s/ DOUGLAS A. TRECO

Douglas A. Treco, Ph.D.
  Director, President, Chief Executive Officer and Principal Executive Officer   October 13, 2016

*

David C. Lubner

 

Executive Vice President of Operations, Chief Financial Officer and Principal Financial and Accounting Officer

 

October 13, 2016

*

Peter Tuxen Bisgaard

 

Director

 

October 13, 2016

*

Markus Goebel, M.D., Ph.D.

 

Director

 

October 13, 2016

*

Robert Heft, Ph.D.

 

Director

 

October 13, 2016

*

Jason Lettmann

 

Director

 

October 13, 2016

*

Edward T. Mathers

 

Director

 

October 13, 2016

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Name
 
Title
 
Date

 

 

 

 

 
*

Timothy R. Pearson
  Director   October 13, 2016

*

Rajeev Shah

 

Director

 

October 13, 2016

* Pursuant to Power of Attorney

By:   /s/ DOUGLAS A TRECO

Douglas A. Treco, Ph.D.
       

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EXHIBIT INDEX

Exhibit
No.
  Exhibit Index
  1.1 * Form of Underwriting Agreement
        
  3.1 ** Amended and Restated Certificate of Incorporation of the Registrant, as currently in effect
        
  3.2   Form of Amended and Restated Certificate of Incorporation of the Registrant (to be effective upon the closing of this offering)
        
  3.3 ** Amended and Restated By-laws of the Registrant, as currently in effect
        
  3.4   Form of Amended and Restated By-laws (to be effective upon the closing of this offering)
        
  4.1 ** Investors' Rights Agreement among the Registrant and certain of its stockholders, dated July 10, 2015
        
  4.2 ** Form of Warrant to Purchase Common Stock, issued by the Registrant to the holders thereof, on April 1, 2015
        
  4.3 ** Warrant to Purchase Common Stock, issued by the Registrant to Steven C. Blacklow, on December 1, 2010
        
  5.1 * Opinion of Goodwin Procter LLP
        
  10.1 #** 2010 Stock Option and Grant Plan and forms of award agreements thereunder
        
  10.2 # 2016 Stock Option and Incentive Plan and forms of award agreements thereunder
        
  10.3 # Senior Executive Cash Incentive Bonus Plan
        
  10.4 # Employee Stock Purchase Plan
        
  10.5 # Form of Indemnification Agreement
        
  10.6 Collaboration and License Agreement, dated as of April 1, 2013, by and between the Registrant and Merck Sharp & Dohme Corp., as amended on November 25, 2013, October 3, 2014, October 24, 2014 and April 21, 2015
        
  10.7 ** Indenture of Lease, dated as of September 15, 2015, between the Registrant and King 87 CPD LLC, as amended on March 29, 2016
        
  10.8 #* Employment Agreement, by and between the Registrant and Douglas A. Treco (to be entered into in connection with this offering)
        
  10.9 #* Employment Agreement, by and between the Registrant and David C. Lubner (to be entered into in connection with this offering)
        
  10.10 #* Employment Agreement, by and between the Registrant and Simon Read (to be entered into in connection with this offering)
        
  10.11 #* Employment Agreement, by and between the Registrant and Ramin Farzaneh-Far (to be entered into in connection with this offering)
        
  10.12   Exclusive License Agreement, effective as of November 29, 2010, between the Registrant and Anthony C. Forster, M.D., Ph.D.
        
  10.13   Research and Development Collaboration and License Agreement, dated as of August 28, 2003 between Gryphon Therapeutics Inc. and Phylos, Inc.
        
  21.1 ** Subsidiaries of the Registrant
 
   

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Exhibit
No.
  Exhibit Index
  23.1   Consent of Deloitte & Touche LLP, Independent Registered Public Accounting Firm
        
  23.2 * Consent of Goodwin Procter LLP (included in Exhibit 5.1)
        
  24.1   Power of Attorney (included in page II-5)

*
To be included by amendment.

**
Previously filed.

Application has been made to the Securities and Exchange Commission for confidential treatment of certain provisions. Omitted material for which confidential treatment has been requested has been filed separately with the Securities and Exchange Commission.

#
Indicates a management contract or any compensatory plan, contract or arrangement.

II-8




Exhibit 3.2

 

THIRD AMENDED AND RESTATED

 

CERTIFICATE OF INCORPORATION

 

OF

 

RA PHARMACEUTICALS, INC.

 

Ra Pharmaceuticals , Inc., a corporation organized and existing under the laws of the State of Delaware (the “ Corporation ”), hereby certifies as follows:

 

1.                                       The name of the Corporation is Ra Pharmaceuticals, Inc.  The date of the filing of its original Certificate of Incorporation with the Secretary of State of the State of Delaware was June 27, 2008 (the “ Original Certificate ”).

 

2.                                       This Third Amended and Restated Certificate of Incorporation (this “ Certificate ”) amends, restates and integrates the provisions of the Second Amended and Restated Certificate of Incorporation that was filed with the Secretary of State of the State of Delaware on July 9, 2015, and as amended from time to time (the “ Amended and Restated Certificate ”), and was duly adopted in accordance with the provisions of Sections 228, 242 and 245 of the General Corporation Law of the State of Delaware (the “ DGCL ”).

 

3.                                       The text of the Amended and Restated Certificate is hereby amended and restated in its entirety to provide as herein set forth in full.

 

ARTICLE I

 

The name of the Corporation is Ra Pharmaceuticals, Inc.

 

ARTICLE II

 

The address of the Corporation’s registered office in the State of Delaware is c/o The Corporation Trust Company, 1209 Orange Street in the City of Wilmington, County of New Castle, 19801.  The name of its registered agent at such address is The Corporation Trust Company.

 

ARTICLE III

 

The purpose of the Corporation is to engage in any lawful act or activity for which corporations may be organized under the DGCL.

 

1



 

ARTICLE IV

 

CAPITAL STOCK

 

The total number of shares of capital stock which the Corporation shall have authority to issue is one hundred fifty-five million (155,000,000), of which (i) one hundred fifty million (150,000,000) shares shall be a class designated as common stock, par value $0.001 per share (the “Common Stock”), and (ii) five million (5,000,000) shares shall be a class designated as undesignated preferred stock, par value $0.001 per share (the “Undesignated Preferred Stock”).

 

Except as otherwise provided in any certificate of designations of any series of Undesignated Preferred Stock, the number of authorized shares of the class of Common Stock or Undesignated Preferred Stock may from time to time be increased or decreased (but not below the number of shares of such class outstanding) by the affirmative vote of the holders of a majority in voting power of the outstanding shares of capital stock of the Corporation irrespective of the provisions of Section 242(b)(2) of the DGCL.

 

The powers, preferences and rights of, and the qualifications, limitations and restrictions upon, each class or series of stock shall be determined in accordance with, or as set forth below in, this Article IV.

 

A.  COMMON STOCK

 

Subject to all the rights, powers and preferences of the Undesignated Preferred Stock and except as provided by law or in this Certificate (or in any certificate of designations of any series of Undesignated Preferred Stock):

 

(a)                                  the holders of the Common Stock shall have the exclusive right to vote for the election of directors of the Corporation (the “Directors”) and on all other matters requiring stockholder action, each outstanding share entitling the holder thereof to one vote on each matter properly submitted to the stockholders of the Corporation for their vote; provided , however , that, except as otherwise required by law, holders of Common Stock, as such, shall not be entitled to vote on any amendment to this Certificate (or on any amendment to a certificate of designations of any series of Undesignated Preferred Stock) that alters or changes the powers, preferences, rights or other terms of one or more outstanding series of Undesignated Preferred Stock if the holders of such affected series of Undesignated Preferred Stock are entitled to vote, either separately or together with the holders of one or more other such series, on such amendment pursuant to this Certificate (or pursuant to a certificate of designations of any series of Undesignated Preferred Stock) or pursuant to the DGCL;

 

(b)                                  dividends may be declared and paid or set apart for payment upon the Common Stock out of any assets or funds of the Corporation legally available for the payment of dividends, but only when and as declared by the Board of Directors or any authorized committee thereof; and

 

2



 

(c)                                   upon the voluntary or involuntary liquidation, dissolution or winding up of the Corporation, the net assets of the Corporation shall be distributed pro rata to the holders of the Common Stock.

 

B.  UNDESIGNATED PREFERRED STOCK

 

The Board of Directors or any authorized committee thereof is expressly authorized, to the fullest extent permitted by law, to provide by resolution or resolutions for, out of the unissued shares of Undesignated Preferred Stock, the issuance of the shares of Undesignated Preferred Stock in one or more series of such stock, and by filing a certificate of designations pursuant to applicable law of the State of Delaware, to establish or change from time to time the number of shares of each such series, and to fix the designations, powers, including voting powers, full or limited, or no voting powers, preferences and the relative, participating, optional or other special rights of the shares of each series and any qualifications, limitations and restrictions thereof.

 

ARTICLE V

 

STOCKHOLDER ACTION

 

1.                                       Action without Meeting .  Any action required or permitted to be taken by the stockholders of the Corporation at any annual or special meeting of stockholders of the Corporation must be effected at a duly called annual or special meeting of stockholders and may not be taken or effected by a written consent of stockholders in lieu thereof.

 

2.                                       Special Meetings .  Except as otherwise required by statute and subject to the rights, if any, of the holders of any series of Undesignated Preferred Stock, special meetings of the stockholders of the Corporation may be called only by the Board of Directors acting pursuant to a resolution approved by the affirmative vote of a majority of the Directors then in office, and special meetings of stockholders may not be called by any other person or persons.  Only those matters set forth in the notice of the special meeting may be considered or acted upon at a special meeting of stockholders of the Corporation.

 

ARTICLE VI

 

DIRECTORS

 

1.                                       General .  The business and affairs of the Corporation shall be managed by or under the direction of the Board of Directors except as otherwise provided herein or required by law.

 

2.                                       Election of Directors .  Election of Directors need not be by written ballot unless the By-laws of the Corporation (the “By-laws”) shall so provide.

 

3



 

3.                                       Number of Directors; Term of Office .  The number of Directors of the Corporation shall be fixed solely and exclusively by resolution duly adopted from time to time by the Board of Directors.  The Directors, other than those who may be elected by the holders of any series of Undesignated Preferred Stock, shall be classified, with respect to the term for which they severally hold office, into three classes.  The initial Class I Directors of the Corporation shall be Douglas A. Treco and Edward T. Mathers; the initial Class II Directors of the Corporation shall be Robert Heft, Jason Lettmann and Rajeev Shah; and the initial Class III Directors of the Corporation shall be Timothy Pearson and Peter Tuxen Bisgaard. The initial Class I Directors shall serve for a term expiring at the annual meeting of stockholders to be held in 2017, the initial Class II Directors shall serve for a term expiring at the annual meeting of stockholders to be held in 2018, and the initial Class III Directors shall serve for a term expiring at the annual meeting of stockholders to be held in 2019.  At each annual meeting of stockholders, Directors elected to succeed those Directors whose terms expire shall be elected for a term of office to expire at the third succeeding annual meeting of stockholders after their election.  Notwithstanding the foregoing, the Directors elected to each class shall hold office until their successors are duly elected and qualified or until their earlier resignation, death or removal.

 

Notwithstanding the foregoing, whenever, pursuant to the provisions of Article IV of this Certificate, the holders of any one or more series of Undesignated Preferred Stock shall have the right, voting separately as a series or together with holders of other such series, to elect Directors at an annual or special meeting of stockholders, the election, term of office, filling of vacancies and other features of such directorships shall be governed by the terms of this Certificate and any certificate of designations applicable to such series.

 

4.                                       Vacancies .  Subject to the rights, if any, of the holders of any series of Undesignated Preferred Stock to elect Directors and to fill vacancies in the Board of Directors relating thereto, any and all vacancies and newly created directorships in the Board of Directors, however occurring, including, without limitation, by reason of an increase in the size of the Board of Directors, or the death, resignation, disqualification or removal of a Director, shall be filled solely and exclusively by the affirmative vote of a majority of the remaining Directors then in office, even if less than a quorum of the Board of Directors, and not by the stockholders.  Any Director appointed in accordance with the preceding sentence shall hold office for the remainder of the full term of the class of Directors in which the new directorship was created or the vacancy occurred and until such Director’s successor shall have been duly elected and qualified or until his or her earlier resignation, death or removal.  Subject to the rights, if any, of the holders of any series of Undesignated Preferred Stock to elect Directors, when the number of Directors is increased or decreased, the Board of Directors shall, subject to Article VI.3 hereof, determine the class or classes to which the increased or decreased number of Directors shall be apportioned; provided , however , that no decrease in the number of Directors shall shorten the term of any incumbent Director.

 

5.                                       Removal .  Subject to the rights, if any, of any series of Undesignated Preferred Stock to elect Directors and to remove any Director whom the holders of any such series have the right to elect, any Director (including persons elected by Directors to fill vacancies in the

 

4


 

Board of Directors) may be removed from office (i) only with cause and (ii) only by the affirmative vote of the holders of 75% or more of the voting power of the outstanding shares of capital stock then entitled to vote at an election of Directors.  At least forty-five (45) days prior to any annual or special meeting of stockholders at which it is proposed that any Director be removed from office, written notice of such proposed removal and the alleged grounds thereof shall be sent to the Director whose removal will be considered at the meeting.

 

ARTICLE VII

 

LIMITATION OF LIABILITY

 

A Director of the Corporation shall not be personally liable to the Corporation or its stockholders for monetary damages for breach of fiduciary duty as a Director, except for liability (a) for any breach of the Director’s duty of loyalty to the Corporation or its stockholders, (b) for acts or omissions not in good faith or which involve intentional misconduct or a knowing violation of law, (c) under Section 174 of the DGCL or (d) for any transaction from which the Director derived an improper personal benefit.  If the DGCL is amended after the effective date of this Certificate to authorize corporate action further eliminating or limiting the personal liability of Directors, then the liability of a Director of the Corporation shall be eliminated or limited to the fullest extent permitted by the DGCL, as so amended.

 

Any amendment, repeal or modification of this Article VII by either of (i) the stockholders of the Corporation or (ii) an amendment to the DGCL, shall not adversely affect any right or protection existing at the time of such amendment, repeal or modification with respect to any acts or omissions occurring before such amendment, repeal or modification of a person serving as a Director at the time of such amendment, repeal or modification.

 

ARTICLE VIII

 

AMENDMENT OF BY-LAWS

 

1.                                       Amendment by Directors .  Except as otherwise provided by law, the By-laws of the Corporation may be amended or repealed by the Board of Directors by the affirmative vote of a majority of the Directors then in office.

 

2.                                       Amendment by Stockholders .  The By-laws of the Corporation may be amended or repealed at any annual meeting of stockholders, or special meeting of stockholders called for such purpose, by the affirmative vote of at least 75% of the voting power of the outstanding shares of capital stock entitled to vote on such amendment or repeal, voting together as a single class; provided , however , that if the Board of Directors recommends that stockholders approve such amendment or repeal at such meeting of stockholders, such amendment or repeal shall only require the affirmative vote of the majority of the voting power of the outstanding shares of capital stock entitled to vote on such amendment or repeal, voting together as a single class.

 

5



 

ARTICLE IX

 

AMENDMENT OF CERTIFICATE OF INCORPORATION

 

The Corporation reserves the right to amend or repeal this Certificate in the manner now or hereafter prescribed by statute and this Certificate, and all rights conferred upon stockholders herein are granted subject to this reservation.  Whenever any vote of the holders of capital stock of the Corporation is required to amend or repeal any provision of this Certificate, and in addition to any other vote of holders of capital stock that is required by this Certificate or by law, such amendment or repeal shall require the affirmative vote of the majority of the voting power of the outstanding shares of capital stock entitled to vote on such amendment or repeal, and the affirmative vote of the majority of the voting power of the outstanding shares of each class entitled to vote thereon as a class, at a duly constituted meeting of stockholders called expressly for such purpose; provided , however , that the affirmative vote of not less than 75% of the voting power of the outstanding shares of capital stock entitled to vote on such amendment or repeal, and the affirmative vote of not less than 75% of the voting power of the outstanding shares of each class entitled to vote thereon as a class, shall be required to amend or repeal any provision of Article V, Article VI, Article VII, Article VIII or Article IX of this Certificate.

 

[End of Text]

 

6



 

THIS THIRD AMENDED AND RESTATED CERTIFICATE OF INCORPORATION is executed as of this     day of         , 2016.

 

 

RA PHARMACEUTICALS, INC.

 

 

 

By:

/s/

 

Name:

Douglas A. Treco, Ph.D.

 

Title:

President and Chief Executive Officer

 

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Exhibit 3.4

 

AMENDED AND RESTATED

 

BY-LAWS

 

OF

 

RA PHARMACEUTICALS, INC.

 

(the “Corporation”)

 

ARTICLE I

 

Stockholders

 

SECTION 1.                             Annual Meeting .  The annual meeting of stockholders (any such meeting being referred to in these By-laws as an “Annual Meeting”) shall be held at the hour, date and place within or without the United States which is fixed by the Board of Directors, which time, date and place may subsequently be changed at any time by vote of the Board of Directors.

 

SECTION 2.                             Notice of Stockholder Business and Nominations .

 

(a)                                  Annual Meetings of Stockholders .

 

(1)                                  Nominations of persons for election to the Board of Directors of the Corporation and the proposal of other business to be considered by the stockholders may be brought before an Annual Meeting (i) by or at the direction of the Board of Directors or (ii) by any stockholder of the Corporation who was a stockholder of record at the time of giving of notice provided for in this By-law, who is entitled to vote at the meeting, who is present (in person or by proxy) at the meeting and who complies with the notice procedures set forth in this By-law as to such nomination or business.  For the avoidance of doubt, the foregoing clause (ii) shall be the exclusive means for a stockholder to bring nominations or business properly before an Annual Meeting (other than matters properly brought under Rule 14a-8 (or any successor rule) under the Securities Exchange Act of 1934, as amended (the “Exchange Act”)), and such stockholder must comply with the notice and other procedures set forth in Article I, Section 2(a)(2) and (3) of this By-law to bring such nominations or business properly before an Annual Meeting.  In addition to the other requirements set forth in this By-law, for any proposal of business to be considered at an Annual Meeting, it must be a proper subject for action by stockholders of the Corporation under Delaware law.

 

(2)                                  For nominations or other business to be properly brought before an Annual Meeting by a stockholder pursuant to clause (ii) of Article I, Section 2(a)(1) of this By-law, the stockholder must (i) have given Timely Notice (as defined below) thereof in writing to the Secretary of the Corporation, (ii) have provided any updates or supplements to such notice at the times and in the forms required by this By-law and (iii) together with the beneficial owner(s), if any, on whose behalf the nomination or

 



 

business proposal is made, have acted in accordance with the representations set forth in the Solicitation Statement (as defined below) required by this By-law.  To be timely, a stockholder’s written notice shall be received by the Secretary at the principal executive offices of the Corporation not later than the close of business on the ninetieth (90th) day nor earlier than the close of business on the one hundred twentieth (120th) day prior to the one-year anniversary of the preceding year’s Annual Meeting; provided , however , that in the event the Annual Meeting is first convened more than thirty (30) days before or more than sixty (60) days after such anniversary date, or if no Annual Meeting were held in the preceding year, notice by the stockholder to be timely must be received by the Secretary of the Corporation not later than the close of business on the later of the ninetieth (90th) day prior to the scheduled date of such Annual Meeting or the tenth (10th) day following the day on which public announcement of the date of such meeting is first made (such notice within such time periods shall be referred to as “Timely Notice”).  Notwithstanding anything to the contrary provided herein, for the first Annual Meeting following the initial public offering of common stock of the Corporation, a stockholder’s notice shall be timely if received by the Secretary at the principal executive offices of the Corporation not later than the close of business on the later of the ninetieth (90th) day prior to the scheduled date of such Annual Meeting or the tenth (10th) day following the day on which public announcement of the date of such Annual Meeting is first made or sent by the Corporation.  Such stockholder’s Timely Notice shall set forth:

 

(A)                                as to each person whom the stockholder proposes to nominate for election or reelection as a director, (i) the name, age, business address and residence address of the nominee, (ii) the principal occupation or employment of the nominee, (iii) the class and number of shares of the corporation that are held of record or are beneficially owned by the nominee and any derivative positions held or beneficially held by the nominee, (iv) whether and the extent to which any hedging or other transaction or series of transactions has been entered into by or on behalf of the nominee with respect to any securities of the corporation, and a description of any other agreement, arrangement or understanding (including any short position or any borrowing or lending of shares), the effect or intent of which is to mitigate loss to, or to manage the risk or benefit of share price changes for, or to increase or decrease the voting power of the nominee, (v) a description of all arrangements or understandings between or among the stockholder and each nominee and any other person or persons (naming such person or persons) pursuant to which the nominations are to be made by the stockholder or concerning the nominee’s potential service on the Board of Directors, (vi) a written statement executed by the nominee acknowledging that as a director of the corporation, the nominee will owe fiduciary duties under Delaware law with respect to the corporation and its stockholders, and (vii) all information relating to such person that is required to be disclosed in solicitations of proxies for election of directors in an election contest, or is otherwise required, in each case pursuant to Regulation 14A under the Exchange Act (including such person’s written consent to being named in the proxy statement as a nominee and to serving as a director if elected);

 

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(B)                                as to any other business that the stockholder proposes to bring before the meeting, a brief description of the business desired to be brought before the meeting, the reasons for conducting such business at the meeting, the text, if any, of any resolutions or By-law amendment proposed for adoption, and any material interest in such business of each Proposing Person (as defined below);

 

(C)                                (i) the name and address of the stockholder giving the notice, as they appear on the Corporation’s books, and the names and addresses of the other Proposing Persons (if any) and (ii) as to each Proposing Person, the following information: (a) the class or series and number of all shares of capital stock of the Corporation which are, directly or indirectly, owned beneficially or of record by such Proposing Person or any of its affiliates or associates (as such terms are defined in Rule 12b-2 promulgated under the Exchange Act), including any shares of any class or series of capital stock of the Corporation as to which such Proposing Person or any of its affiliates or associates has a right to acquire beneficial ownership at any time in the future, (b) all Synthetic Equity Interests (as defined below) in which such Proposing Person or any of its affiliates or associates, directly or indirectly, holds an interest including a description of the material terms of each such Synthetic Equity Interest, including without limitation, identification of the counterparty to each such Synthetic Equity Interest and disclosure, for each such Synthetic Equity Interest, as to (x) whether or not such Synthetic Equity Interest conveys any voting rights, directly or indirectly, in such shares to such Proposing Person, (y) whether or not such Synthetic Equity Interest is required to be, or is capable of being, settled through delivery of such shares and (z) whether or not such Proposing Person and/or, to the extent known, the counterparty to such Synthetic Equity Interest has entered into other transactions that hedge or mitigate the economic effect of such Synthetic Equity Interest, (c) any proxy (other than a revocable proxy given in response to a public proxy solicitation made pursuant to, and in accordance with, the Exchange Act), agreement, arrangement, understanding or relationship pursuant to which such Proposing Person has or shares a right to, directly or indirectly, vote any shares of any class or series of capital stock of the Corporation, (d) any rights to dividends or other distributions on the shares of any class or series of capital stock of the Corporation, directly or indirectly, owned beneficially by such Proposing Person that are separated or separable from the underlying shares of the Corporation, and (e) any performance-related fees (other than an asset based fee) that such Proposing Person, directly or indirectly, is entitled to based on any increase or decrease in the value of shares of any class or series of capital stock of the Corporation or any Synthetic Equity Interests (the disclosures to be made pursuant to the foregoing clauses (a) through (e) are referred to, collectively, as “Material Ownership Interests”) and (iii) a description of the material terms of all agreements, arrangements or understandings (whether or not in writing) entered into by any Proposing Person or any of its affiliates or associates with any other person for the purpose of acquiring, holding, disposing or voting of any shares of any class or series of capital stock of the Corporation;

 

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(D)                                (i) a description of all agreements, arrangements or understandings by and among any of the Proposing Persons, or by and among any Proposing Persons and any other person (including with any proposed nominee(s)), pertaining to the nomination(s), the nominee’s service on the Board of Directors, or other business proposed to be brought before the meeting of stockholders (which description shall identify the name of each other person who is party to such an agreement, arrangement or understanding), and (ii) identification of the names and addresses of other stockholders (including beneficial owners) known by any of the Proposing Persons to support such nominations or other business proposal(s), and to the extent known the class and number of all shares of the Corporation’s capital stock owned beneficially or of record by such other stockholder(s) or other beneficial owner(s); and

 

(E)                                 a statement whether or not the stockholder giving the notice and/or the other Proposing Person(s), if any, will deliver a proxy statement and form of proxy to holders of, in the case of a business proposal, at least the percentage of voting power of all of the shares of capital stock of the Corporation required under applicable law to approve the proposal or, in the case of a nomination or nominations, at least the percentage of voting power of all of the shares of capital stock of the Corporation reasonably believed by such Proposing Person to be sufficient to elect the nominee or nominees proposed to be nominated by such stockholder (such statement, the “Solicitation Statement”).

 

For purposes of this Article I of these By-laws, the term “Proposing Person” shall mean the following persons: (i) the stockholder of record providing the notice of nominations or business proposed to be brought before a stockholders’ meeting, and (ii) the beneficial owner(s), if different, on whose behalf the nominations or business proposed to be brought before a stockholders’ meeting is made.  For purposes of this Section 2 of Article I of these By-laws, the term “Synthetic Equity Interest” shall mean any transaction, agreement or arrangement (or series of transactions, agreements or arrangements), including, without limitation, any derivative, swap, hedge, repurchase or so-called “stock borrowing” agreement or arrangement, the purpose or effect of which is to, directly or indirectly:  (a) give a person or entity economic benefit and/or risk similar to ownership of shares of any class or series of capital stock of the Corporation, in whole or in part, including due to the fact that such transaction, agreement or arrangement provides, directly or indirectly, the opportunity to profit or avoid a loss from any increase or decrease in the value of any shares of any class or series of capital stock of the Corporation, (b) mitigate loss to, reduce the economic risk of or manage the risk of share price changes for, any person or entity with respect to any shares of any class or series of capital stock of the Corporation, (c) otherwise provide in any manner the opportunity to profit or avoid a loss from any decrease in the value of any shares of any class or series of capital stock of the Corporation, or (d) increase or decrease the voting power of any person or entity with respect to any shares of any class or series of capital stock of the Corporation.

 

(3)                                  A stockholder providing Timely Notice of nominations or business proposed to be brought before an Annual Meeting shall further update and supplement

 

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such notice, if necessary, so that the information (including, without limitation, the Material Ownership Interests information) provided or required to be provided in such notice pursuant to this By-law shall be true and correct as of the record date for the meeting and as of the date that is ten (10) business days prior to such Annual Meeting, and such update and supplement shall be received by the Secretary at the principal executive offices of the Corporation not later than the close of business on the fifth (5th) business day after the record date for the Annual Meeting (in the case of the update and supplement required to be made as of the record date), and not later than the close of business on the eighth (8th) business day prior to the date of the Annual Meeting (in the case of the update and supplement required to be made as of ten (10) business days prior to the meeting).

 

(4)                                  Notwithstanding anything in the second sentence of Article I, Section 2(a)(2) of this By-law to the contrary, in the event that the number of directors to be elected to the Board of Directors of the Corporation is increased and there is no public announcement naming all of the nominees for director or specifying the size of the increased Board of Directors made by the Corporation at least ten (10) days before the last day a stockholder may deliver a notice of nomination in accordance with the second sentence of Article I, Section 2(a)(2), a stockholder’s notice required by this By-law shall also be considered timely, but only with respect to nominees for any new positions created by such increase, if it shall be received by the Secretary of the Corporation not later than the close of business on the tenth (10th) day following the day on which such public announcement is first made by the Corporation.

 

(b)                                  General .

 

(1)                                  Only such persons who are nominated in accordance with the provisions of this By-law shall be eligible for election and to serve as directors and only such business shall be conducted at an Annual Meeting as shall have been brought before the meeting in accordance with the provisions of this By-law or in accordance with Rule 14a-8 under the Exchange Act.  The Board of Directors or a designated committee thereof shall have the power to determine whether a nomination or any business proposed to be brought before the meeting was made in accordance with the provisions of this By-law.  If neither the Board of Directors nor such designated committee makes a determination as to whether any stockholder proposal or nomination was made in accordance with the provisions of this By-law, the presiding officer of the Annual Meeting shall have the power and duty to determine whether the stockholder proposal or nomination was made in accordance with the provisions of this By-law.  If the Board of Directors or a designated committee thereof or the presiding officer, as applicable, determines that any stockholder proposal or nomination was not made in accordance with the provisions of this By-law, such proposal or nomination shall be disregarded and shall not be presented for action at the Annual Meeting.

 

(2)                                  Except as otherwise required by law, nothing in this Article I, Section 2 shall obligate the Corporation or the Board of Directors to include in any proxy statement or other stockholder communication distributed on behalf of the Corporation or the Board

 

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of Directors information with respect to any nominee for director or any other matter of business submitted by a stockholder.

 

(3)                                  Notwithstanding the foregoing provisions of this Article I, Section 2, if the nominating or proposing stockholder (or a qualified representative of the stockholder) does not appear at the Annual Meeting to present a nomination or any business, such nomination or business shall be disregarded, notwithstanding that proxies in respect of such vote may have been received by the Corporation.  For purposes of this Article I, Section 2, to be considered a qualified representative of the proposing stockholder, a person must be authorized by a written instrument executed by such stockholder or an electronic transmission delivered by such stockholder to act for such stockholder as proxy at the meeting of stockholders and such person must produce such written instrument or electronic transmission, or a reliable reproduction of the written instrument or electronic transmission, to the presiding officer at the meeting of stockholders.

 

(4)                                  For purposes of this By-law, “public announcement” shall mean disclosure in a press release reported by the Dow Jones News Service, Associated Press or comparable national news service or in a document publicly filed by the Corporation with the Securities and Exchange Commission pursuant to Section 13, 14 or 15(d) of the Exchange Act.

 

(5)                                  Notwithstanding the foregoing provisions of this By-law, a stockholder shall also comply with all applicable requirements of the Exchange Act and the rules and regulations thereunder with respect to the matters set forth in this By-law.  Nothing in this By-law shall be deemed to affect any rights of (i) stockholders to have proposals included in the Corporation’s proxy statement pursuant to Rule 14a-8 (or any successor rule), as applicable, under the Exchange Act and, to the extent required by such rule, have such proposals considered and voted on at an Annual Meeting or (ii) the holders of any series of Undesignated Preferred Stock to elect directors under specified circumstances.

 

SECTION 3.                             Special Meetings .  Except as otherwise required by statute and subject to the rights, if any, of the holders of any series of Undesignated Preferred Stock, special meetings of the stockholders of the Corporation may be called only by the Board of Directors acting pursuant to a resolution approved by the affirmative vote of a majority of the Directors then in office.  The Board of Directors may postpone or reschedule any previously scheduled special meeting of stockholders. Only those matters set forth in the notice of the special meeting may be considered or acted upon at a special meeting of stockholders of the Corporation.  Nominations of persons for election to the Board of Directors of the Corporation and stockholder proposals of other business shall not be brought before a special meeting of stockholders to be considered by the stockholders.

 

SECTION 4.                             Notice of Meetings; Adjournments .

 

(a)                                  A notice of each Annual Meeting stating the hour, date and place, if any, of such Annual Meeting and the means of remote communication, if any, by which stockholders and proxyholders may be deemed to be present in person and vote at such meeting, shall be given not

 

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less than ten (10) days nor more than sixty (60) days before the Annual Meeting, to each stockholder entitled to vote thereat by delivering such notice to such stockholder or by mailing it, postage prepaid, addressed to such stockholder at the address of such stockholder as it appears on the Corporation’s stock transfer books.  Without limiting the manner by which notice may otherwise be given to stockholders, any notice to stockholders may be given by electronic transmission in the manner provided in Section 232 of the Delaware General Corporation Law (“DGCL”).

 

(b)                                  Unless otherwise required by the DGCL, notice of all special meetings of stockholders shall be given in the same manner as provided for Annual Meetings, except that the notice of all special meetings shall state the purpose or purposes for which the meeting has been called.

 

(c)                                   Notice of an Annual Meeting or special meeting of stockholders need not be given to a stockholder if a waiver of notice is executed, or waiver of notice by electronic transmission is provided, before or after such meeting by such stockholder or if such stockholder attends such meeting, unless such attendance is for the express purpose of objecting at the beginning of the meeting to the transaction of any business because the meeting was not lawfully called or convened.

 

(d)                                  The Board of Directors may postpone and reschedule any previously scheduled Annual Meeting or special meeting of stockholders and any record date with respect thereto, regardless of whether any notice or public disclosure with respect to any such meeting has been sent or made pursuant to Section 2 of this Article I of these By-laws or otherwise.  In no event shall the public announcement of an adjournment, postponement or rescheduling of any previously scheduled meeting of stockholders commence a new time period for the giving of a stockholder’s notice under this Article I of these By-laws.

 

(e)                                   The presiding officer may adjourn any meeting of stockholders whether or not a quorum is present.  When any Annual Meeting or special meeting of stockholders is adjourned to another hour, date or place, notice need not be given of the adjourned meeting other than an announcement at the meeting at which the adjournment is taken of the hour, date and place, if any, to which the meeting is adjourned and the means of remote communications, if any, by which stockholders and proxyholders may be deemed to be present in person and vote at such adjourned meeting; provided, however, that if the adjournment is for more than thirty (30) days from the meeting date, or if after the adjournment a new record date is fixed for the adjourned meeting, notice of the adjourned meeting and the means of remote communications, if any, by which stockholders and proxyholders may be deemed to be present in person and vote at such adjourned meeting shall be given to each stockholder of record entitled to vote thereat and each stockholder who, by law or under the Certificate of Incorporation of the Corporation (as the same may hereafter be amended and/or restated, the “Certificate”) or these By-laws, is entitled to such notice.

 

SECTION 5.                             Quorum .  A majority of the voting power of the outstanding shares entitled to vote, present in person or represented by proxy, shall constitute a quorum at any meeting of stockholders.  If less than a quorum is present at a meeting, the holders of voting stock representing a majority of the voting power present at the meeting or the presiding officer

 

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may adjourn the meeting from time to time, and the meeting may be held as adjourned without further notice, except as provided in Section 4 of this Article I.  At such adjourned meeting at which a quorum is present, any business may be transacted which might have been transacted at the original meeting.  The stockholders present at a duly constituted meeting may continue to transact business until adjournment, notwithstanding the withdrawal of enough stockholders to leave less than a quorum.

 

SECTION 6.                             Voting and Proxies .  Stockholders shall have one vote for each share of stock entitled to vote owned by them of record according to the stock ledger of the Corporation as of the record date, unless otherwise provided by law or by the Certificate.  Stockholders may vote either (i) in person, (ii) by written proxy or (iii) by a transmission permitted by Section 212(c) of the DGCL.  Any copy, facsimile telecommunication or other reliable reproduction of the writing or transmission permitted by Section 212(c) of the DGCL may be substituted for or used in lieu of the original writing or transmission for any and all purposes for which the original writing or transmission could be used, provided that such copy, facsimile telecommunication or other reproduction shall be a complete reproduction of the entire original writing or transmission.  Proxies shall be filed in accordance with the procedures established for the meeting of stockholders.  A proxy with respect to stock held in the name of two or more persons shall be valid if executed by or on behalf of any one of them unless at or prior to the exercise of the proxy the Corporation receives a specific written notice to the contrary from any one of them.

 

SECTION 7.                             Action at Meeting .  When a quorum is present at any meeting of stockholders, any matter before any such meeting (other than an election of a director or directors) shall be decided by a majority of the votes properly cast for and against such matter, except where a larger vote is required by law, by the Certificate or by these By-laws.  Any election of directors by stockholders shall be determined by a plurality of the votes properly cast on the election of directors.

 

SECTION 8.                             Stockholder Lists .  The Secretary or an Assistant Secretary (or the Corporation’s transfer agent or other person authorized by these By-laws or by law) shall prepare and make, at least ten (10) days before every Annual Meeting or special meeting of stockholders, a complete list of the stockholders entitled to vote at the meeting, arranged in alphabetical order, and showing the address of each stockholder and the number of shares registered in the name of each stockholder.  Such list shall be open to the examination of any stockholder, for a period of at least ten (10) days prior to the meeting as provided in the manner, and subject to the terms, set forth in Section 219 of the DGCL (or any successor provision).  The list shall also be open to the examination of any stockholder.

 

SECTION 9.                             Presiding Officer .  The Board of Directors shall designate a representative to preside over all Annual Meetings or special meetings of stockholders, provided that if the Board of Directors does not so designate such a presiding officer, then the Chairman of the Board, if one is elected, shall preside over such meetings.  If the Board of Directors does not so designate such a presiding officer and there is no Chairman of the Board or the Chairman of the Board is unable to so preside or is absent, then the Chief Executive Officer, if one is elected,

 

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shall preside over such meetings, provided further that if there is no Chief Executive Officer or the Chief Executive Officer is unable to so preside or is absent, then the President shall preside over such meetings.  The presiding officer at any Annual Meeting or special meeting of stockholders shall have the power, among other things, to adjourn such meeting at any time and from time to time, subject to Sections 4 and 5 of this Article I.  The order of business and all other matters of procedure at any meeting of the stockholders shall be determined by the presiding officer.

 

SECTION 10.                      Inspectors of Elections .  The Corporation shall, in advance of any meeting of stockholders, appoint one or more inspectors to act at the meeting and make a written report thereof.  The Corporation may designate one or more persons as alternate inspectors to replace any inspector who fails to act.  If no inspector or alternate is able to act at a meeting of stockholders, the presiding officer shall appoint one or more inspectors to act at the meeting.  Any inspector may, but need not, be an officer, employee or agent of the Corporation.  Each inspector, before entering upon the discharge of his or her duties, shall take and sign an oath faithfully to execute the duties of inspector with strict impartiality and according to the best of his or her ability.  The inspectors shall perform such duties as are required by the DGCL, including the counting of all votes and ballots.  The inspectors may appoint or retain other persons or entities to assist the inspectors in the performance of the duties of the inspectors.  The presiding officer may review all determinations made by the inspectors, and in so doing the presiding officer shall be entitled to exercise his or her sole judgment and discretion and he or she shall not be bound by any determinations made by the inspectors.  All determinations by the inspectors and, if applicable, the presiding officer, shall be subject to further review by any court of competent jurisdiction.

 

ARTICLE II

 

Directors

 

SECTION 1.                             Powers .  The business and affairs of the Corporation shall be managed by or under the direction of the Board of Directors except as otherwise provided by the Certificate or required by law.

 

SECTION 2.                             Number and Terms .  The number of directors of the Corporation shall be fixed solely and exclusively by resolution duly adopted from time to time by the Board of Directors.  The directors shall hold office in the manner provided in the Certificate.

 

SECTION 3.                             Qualification .  No director need be a stockholder of the Corporation.

 

SECTION 4.                             Vacancies .  Vacancies in the Board of Directors shall be filled in the manner provided in the Certificate.

 

SECTION 5.                             Removal .  Directors may be removed from office only in the manner provided in the Certificate.

 

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SECTION 6.                             Resignation .  A director may resign at any time by electronic transmission or by giving written notice to the Chairman of the Board, if one is elected, the President or the Secretary.  A resignation shall be effective upon receipt, unless the resignation otherwise provides.

 

SECTION 7.                             Regular Meetings .  The regular annual meeting of the Board of Directors shall be held, without notice other than this Section 7, on the same date and at the same place as the Annual Meeting following the close of such meeting of stockholders.  Other regular meetings of the Board of Directors may be held at such hour, date and place as the Board of Directors may by resolution from time to time determine.

 

SECTION 8.                             Special Meetings .  Special meetings of the Board of Directors may be called, orally or in writing, by or at the request of a majority of the directors, the Chairman of the Board, if one is elected, or the President.  The person calling any such special meeting of the Board of Directors may fix the hour, date and place thereof.

 

SECTION 9.                             Notice of Meetings .  Notice of the hour, date and place of all special meetings of the Board of Directors shall be given to each director by the Secretary or an Assistant Secretary, or in case of the death, absence, incapacity or refusal of such persons, by the Chairman of the Board, if one is elected, or the President or such other officer designated by the Chairman of the Board, if one is elected, or the President.  Notice of any special meeting of the Board of Directors shall be given to each director in person, by telephone, or by facsimile, electronic mail or other form of electronic communication, sent to his or her business or home address, at least twenty-four (24) hours in advance of the meeting, or by written notice mailed to his or her business or home address, at least forty-eight (48) hours in advance of the meeting.  Such notice shall be deemed to be delivered when hand-delivered to such address, read to such director by telephone, deposited in the mail so addressed, with postage thereon prepaid if mailed, dispatched or transmitted if sent by facsimile transmission or by electronic mail or other form of electronic communications.  A written waiver of notice signed or electronically transmitted before or after a meeting by a director and filed with the records of the meeting shall be deemed to be equivalent to notice of the meeting.  The attendance of a director at a meeting shall constitute a waiver of notice of such meeting, except where a director attends a meeting for the express purpose of objecting at the beginning of the meeting to the transaction of any business because such meeting is not lawfully called or convened.  Except as otherwise required by law, by the Certificate or by these By-laws, neither the business to be transacted at, nor the purpose of, any meeting of the Board of Directors need be specified in the notice or waiver of notice of such meeting.

 

SECTION 10.                      Quorum .  At any meeting of the Board of Directors, a majority of the total number of directors shall constitute a quorum for the transaction of business, but if less than a quorum is present at a meeting, a majority of the directors present may adjourn the meeting from time to time, and the meeting may be held as adjourned without further notice.  Any business which might have been transacted at the meeting as originally noticed may be transacted at such adjourned meeting at which a quorum is present.  For purposes of this section, the total number

 

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of directors includes any unfilled vacancies or newly created directorships on the Board of Directors.

 

SECTION 11.                      Action at Meeting .  At any meeting of the Board of Directors at which a quorum is present, the vote of a majority of the directors present shall constitute action by the Board of Directors, unless otherwise required by law, by the Certificate or by these By-laws.

 

SECTION 12.                      Action by Consent .  Any action required or permitted to be taken at any meeting of the Board of Directors may be taken without a meeting if all members of the Board of Directors consent thereto in writing or by electronic transmission and the writing or writings or electronic transmission or transmissions are filed with the records of the meetings of the Board of Directors.  Such filing shall be in paper form if the minutes are maintained in paper form and shall be in electronic form if the minutes are maintained in electronic form.  Such consent shall be treated as a resolution of the Board of Directors for all purposes.

 

SECTION 13.                      Manner of Participation .  Directors may participate in meetings of the Board of Directors by means of conference telephone or other communications equipment by means of which all directors participating in the meeting can hear each other, and participation in a meeting in accordance herewith shall constitute presence in person at such meeting for purposes of these By-laws.

 

SECTION 14.                      Presiding Director .  The Board of Directors shall designate a representative to preside over all meetings of the Board of Directors, provided that if the Board of Directors does not so designate such a presiding director or such designated presiding director is unable to so preside or is absent, then the Chairman of the Board, if one is elected, shall preside over all meetings of the Board of Directors.  If both the designated presiding director, if one is so designated, and the Chairman of the Board, if one is elected, are unable to preside or are absent, the Board of Directors shall designate an alternate representative to preside over a meeting of the Board of Directors.

 

SECTION 15.                      Committees .  The Board of Directors, by vote of a majority of the directors then in office, may elect one or more committees, including, without limitation, a Compensation Committee, a Nominating & Corporate Governance Committee and an Audit Committee, and may delegate thereto some or all of its powers except those which by law, by the Certificate or by these By-laws may not be delegated.  Except as the Board of Directors may otherwise determine, any such committee may make rules for the conduct of its business, but unless otherwise provided by the Board of Directors or in such rules, its business shall be conducted so far as possible in the same manner as is provided by these By-laws for the Board of Directors.  All members of such committees shall hold such offices at the pleasure of the Board of Directors.  The Board of Directors may abolish any such committee at any time.  Any committee to which the Board of Directors delegates any of its powers or duties shall keep records of its meetings and shall report its action to the Board of Directors.

 

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ARTICLE III

 

Officers

 

SECTION 1.                             Enumeration .  The officers of the Corporation shall consist of a President, a Treasurer, a Secretary and such other officers, including, without limitation, a Chairman of the Board of Directors, a Chief Executive Officer and one or more Vice Presidents (including Executive Vice Presidents or Senior Vice Presidents), Assistant Vice Presidents, Assistant Treasurers and Assistant Secretaries, as the Board of Directors may determine.

 

SECTION 2.                             Election .  At the regular annual meeting of the Board of Directors following the Annual Meeting, the Board of Directors shall elect the President, the Treasurer and the Secretary.  Other officers may be elected by the Board of Directors at such regular annual meeting of the Board of Directors or at any other regular or special meeting.

 

SECTION 3.                             Qualification .  No officer need be a stockholder or a director.  Any person may occupy more than one office of the Corporation at any time.

 

SECTION 4.                             Tenure .  Except as otherwise provided by the Certificate or by these By-laws, each of the officers of the Corporation shall hold office until the regular annual meeting of the Board of Directors following the next Annual Meeting and until his or her successor is elected and qualified or until his or her earlier resignation or removal.

 

SECTION 5.                             Resignation .  Any officer may resign by delivering his or her written or electronically transmitted resignation to the Corporation addressed to the President or the Secretary, and such resignation shall be effective upon receipt, unless the resignation otherwise provides.

 

SECTION 6.                             Removal .  Except as otherwise provided by law or by resolution of the Board of Directors, the Board of Directors may remove any officer with or without cause by the affirmative vote of a majority of the directors then in office.

 

SECTION 7.                             Absence or Disability .  In the event of the absence or disability of any officer, the Board of Directors may designate another officer to act temporarily in place of such absent or disabled officer.

 

SECTION 8.                             Vacancies .  Any vacancy in any office may be filled for the unexpired portion of the term by the Board of Directors.

 

SECTION 9.                             President .  The President shall, subject to the direction of the Board of Directors, have such powers and shall perform such duties as the Board of Directors may from time to time designate.

 

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SECTION 10.                      Chairman of the Board .  The Chairman of the Board, if one is elected, shall have such powers and shall perform such duties as the Board of Directors may from time to time designate.

 

SECTION 11.                      Chief Executive Officer .  The Chief Executive Officer, if one is elected, shall have such powers and shall perform such duties as the Board of Directors may from time to time designate.

 

SECTION 12.                      Vice Presidents and Assistant Vice Presidents .  Any Vice President (including any Executive Vice President or Senior Vice President) and any Assistant Vice President shall have such powers and shall perform such duties as the Board of Directors or the Chief Executive Officer may from time to time designate.

 

SECTION 13.                      Treasurer and Assistant Treasurers .  The Treasurer shall, subject to the direction of the Board of Directors and except as the Board of Directors or the Chief Executive Officer may otherwise provide, have general charge of the financial affairs of the Corporation and shall cause to be kept accurate books of account.  The Treasurer shall have custody of all funds, securities, and valuable documents of the Corporation.  He or she shall have such other duties and powers as may be designated from time to time by the Board of Directors or the Chief Executive Officer.  Any Assistant Treasurer shall have such powers and perform such duties as the Board of Directors or the Chief Executive Officer may from time to time designate.

 

SECTION 14.                      Secretary and Assistant Secretaries .  The Secretary shall record all the proceedings of the meetings of the stockholders and the Board of Directors (including committees of the Board of Directors) in books kept for that purpose.  In his or her absence from any such meeting, a temporary secretary chosen at the meeting shall record the proceedings thereof.  The Secretary shall have charge of the stock ledger (which may, however, be kept by any transfer or other agent of the Corporation).  The Secretary shall have custody of the seal of the Corporation, and the Secretary, or an Assistant Secretary shall have authority to affix it to any instrument requiring it, and, when so affixed, the seal may be attested by his or her signature or that of an Assistant Secretary.  The Secretary shall have such other duties and powers as may be designated from time to time by the Board of Directors or the Chief Executive Officer.  In the absence of the Secretary, any Assistant Secretary may perform his or her duties and responsibilities.  Any Assistant Secretary shall have such powers and perform such duties as the Board of Directors or the Chief Executive Officer may from time to time designate.

 

SECTION 15.                      Other Powers and Duties .  Subject to these By-laws and to such limitations as the Board of Directors may from time to time prescribe, the officers of the Corporation shall each have such powers and duties as generally pertain to their respective offices, as well as such powers and duties as from time to time may be conferred by the Board of Directors or the Chief Executive Officer.

 

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ARTICLE IV

 

Capital Stock

 

SECTION 1.                             Certificates of Stock .  Each stockholder shall be entitled to a certificate of the capital stock of the Corporation in such form as may from time to time be prescribed by the Board of Directors.  Such certificate shall be signed by any two authorized officers of the Corporation.  The Corporation seal and the signatures by the Corporation’s officers, the transfer agent or the registrar may be facsimiles.  In case any officer, transfer agent or registrar who has signed or whose facsimile signature has been placed on such certificate shall have ceased to be such officer, transfer agent or registrar before such certificate is issued, it may be issued by the Corporation with the same effect as if he or she were such officer, transfer agent or registrar at the time of its issue.  Every certificate for shares of stock which are subject to any restriction on transfer and every certificate issued when the Corporation is authorized to issue more than one class or series of stock shall contain such legend with respect thereto as is required by law.  Notwithstanding anything to the contrary provided in these Bylaws, the Board of Directors of the Corporation may provide by resolution or resolutions that some or all of any or all classes or series of its stock shall be uncertificated shares (except that the foregoing shall not apply to shares represented by a certificate until such certificate is surrendered to the Corporation), and by the approval and adoption of these Bylaws the Board of Directors has determined that all classes or series of the Corporation’s stock may be uncertificated, whether upon original issuance, re-issuance, or subsequent transfer.

 

SECTION 2.                             Transfers .  Subject to any restrictions on transfer and unless otherwise provided by the Board of Directors, shares of stock that are represented by a certificate may be transferred on the books of the Corporation by the surrender to the Corporation or its transfer agent of the certificate theretofore properly endorsed or accompanied by a written assignment or power of attorney properly executed, with transfer stamps (if necessary) affixed, and with such proof of the authenticity of signature as the Corporation or its transfer agent may reasonably require.  Shares of stock that are not represented by a certificate may be transferred on the books of the Corporation by submitting to the Corporation or its transfer agent such evidence of transfer and following such other procedures as the Corporation or its transfer agent may require.

 

SECTION 3.                             Record Holders .  Except as may otherwise be required by law, by the Certificate or by these By-laws, the Corporation shall be entitled to treat the record holder of stock as shown on its books as the owner of such stock for all purposes, including the payment of dividends and the right to vote with respect thereto, regardless of any transfer, pledge or other disposition of such stock, until the shares have been transferred on the books of the Corporation in accordance with the requirements of these By-laws.

 

SECTION 4.                             Record Date .  In order that the Corporation may determine the stockholders entitled to notice of or to vote at any meeting of stockholders or any adjournment thereof or entitled to receive payment of any dividend or other distribution or allotment of any rights, or entitled to exercise any rights in respect of any change, conversion or exchange of stock or for the purpose of any other lawful action, the Board of Directors may fix a record date,

 

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which record date shall not precede the date upon which the resolution fixing the record date is adopted by the Board of Directors, and which record date: (a) in the case of determination of stockholders entitled to vote at any meeting of stockholders, shall, unless otherwise required by law, not be more than sixty (60) nor less than ten (10) days before the date of such meeting and (b) in the case of any other action, shall not be more than sixty (60) days prior to such other action.  If no record date is fixed: (i) the record date for determining stockholders entitled to notice of or to vote at a meeting of stockholders shall be at the close of business on the day next preceding the day on which notice is given, or, if notice is waived, at the close of business on the day next preceding the day on which the meeting is held; and (ii) the record date for determining stockholders for any other purpose shall be at the close of business on the day on which the Board of Directors adopts the resolution relating thereto.

 

SECTION 5.                             Replacement of Certificates .  In case of the alleged loss, destruction or mutilation of a certificate of stock of the Corporation, a duplicate certificate may be issued in place thereof, upon such terms as the Board of Directors may prescribe.

 

ARTICLE V

 

Indemnification

 

SECTION 1.                             Definitions .  For purposes of this Article:

 

(a)                                  “Corporate Status” describes the status of a person who is serving or has served (i) as a Director of the Corporation, (ii) as an Officer of the Corporation, (iii) as a Non-Officer Employee of the Corporation, or (iv) as a director, partner, trustee, officer, employee or agent of any other corporation, partnership, limited liability company, joint venture, trust, employee benefit plan, foundation, association, organization or other legal entity which such person is or was serving at the request of the Corporation.  For purposes of this Section 1(a), a Director, Officer or Non-Officer Employee of the Corporation who is serving or has served as a director, partner, trustee, officer, employee or agent of a Subsidiary shall be deemed to be serving at the request of the Corporation.  Notwithstanding the foregoing, “Corporate Status” shall not include the status of a person who is serving or has served as a director, officer, employee or agent of a constituent corporation absorbed in a merger or consolidation transaction with the Corporation with respect to such person’s activities prior to said transaction, unless specifically authorized by the Board of Directors or the stockholders of the Corporation;

 

(b)                                  “Director” means any person who serves or has served the Corporation as a director on the Board of Directors of the Corporation;

 

(c)                                   “Disinterested Director” means, with respect to each Proceeding in respect of which indemnification is sought hereunder, a Director of the Corporation who is not and was not a party to such Proceeding;

 

(d)                                  “Expenses” means all attorneys’ fees, retainers, court costs, transcript costs, fees of expert witnesses, private investigators and professional advisors (including, without limitation, accountants and investment bankers), travel expenses, duplicating costs, printing and

 

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binding costs, costs of preparation of demonstrative evidence and other courtroom presentation aids and devices, costs incurred in connection with document review, organization, imaging and computerization, telephone charges, postage, delivery service fees, and all other disbursements, costs or expenses of the type customarily incurred in connection with prosecuting, defending, preparing to prosecute or defend, investigating, being or preparing to be a witness in, settling or otherwise participating in, a Proceeding;

 

(e)                                   “Liabilities” means judgments, damages, liabilities, losses, penalties, excise taxes, fines and amounts paid in settlement;

 

(f)                                    “Non-Officer Employee” means any person who serves or has served as an employee or agent of the Corporation, but who is not or was not a Director or Officer;

 

(g)                                   “Officer” means any person who serves or has served the Corporation as an officer of the Corporation appointed by the Board of Directors of the Corporation;

 

(h)                                  “Proceeding” means any threatened, pending or completed action, suit, arbitration, alternate dispute resolution mechanism, inquiry, investigation, administrative hearing or other proceeding, whether civil, criminal, administrative, arbitrative or investigative; and

 

(i)                                      “Subsidiary” shall mean any corporation, partnership, limited liability company, joint venture, trust or other entity of which the Corporation owns (either directly or through or together with another Subsidiary of the Corporation) either (i) a general partner, managing member or other similar interest or (ii) (A) fifty percent (50%) or more of the voting power of the voting capital equity interests of such corporation, partnership, limited liability company, joint venture or other entity, or (B) fifty percent (50%) or more of the outstanding voting capital stock or other voting equity interests of such corporation, partnership, limited liability company, joint venture or other entity.

 

SECTION 2.                             Indemnification of Directors and Officers .

 

(a)                                  Subject to the operation of Section 4 of this Article V of these By-laws, each Director and Officer shall be indemnified and held harmless by the Corporation to the fullest extent authorized by the DGCL, as the same exists or may hereafter be amended (but, in the case of any such amendment, only to the extent that such amendment permits the Corporation to provide broader indemnification rights than such law permitted the Corporation to provide prior to such amendment), and to the extent authorized in this Section 2.

 

(1)                                  Actions, Suits and Proceedings Other than By or In the Right of the Corporation .  Each Director and Officer shall be indemnified and held harmless by the Corporation against any and all Expenses and Liabilities that are incurred or paid by such Director or Officer or on such Director’s or Officer’s behalf in connection with any Proceeding or any claim, issue or matter therein (other than an action by or in the right of the Corporation), which such Director or Officer is, or is threatened to be made, a party to or participant in by reason of such Director’s or Officer’s Corporate Status, if such Director or Officer acted in good faith and in a manner such Director or Officer reasonably believed to be in or not opposed to the best interests of the Corporation and,

 

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with respect to any criminal proceeding, had no reasonable cause to believe his or her conduct was unlawful.

 

(2)                                  Actions, Suits and Proceedings By or In the Right of the Corporation . Each Director and Officer shall be indemnified and held harmless by the Corporation against any and all Expenses that are incurred by such Director or Officer or on such Director’s or Officer’s behalf in connection with any Proceeding or any claim, issue or matter therein by or in the right of the Corporation, which such Director or Officer is, or is threatened to be made, a party to or participant in by reason of such Director’s or Officer’s Corporate Status, if such Director or Officer acted in good faith and in a manner such Director or Officer reasonably believed to be in or not opposed to the best interests of the Corporation; provided, however, that no indemnification shall be made under this Section 2(a)(2) in respect of any claim, issue or matter as to which such Director or Officer shall have been finally adjudged by a court of competent jurisdiction to be liable to the Corporation, unless, and only to the extent that, the Court of Chancery or another court in which such Proceeding was brought shall determine upon application that, despite adjudication of liability, but in view of all the circumstances of the case, such Director or Officer is fairly and reasonably entitled to indemnification for such Expenses that such court deems proper.

 

(3)                                  Survival of Rights .  The rights of indemnification provided by this Section 2 shall continue as to a Director or Officer after he or she has ceased to be a Director or Officer and shall inure to the benefit of his or her heirs, executors, administrators and personal representatives.

 

(4)                                  Actions by Directors or Officers .  Notwithstanding the foregoing, the Corporation shall indemnify any Director or Officer seeking indemnification in connection with a Proceeding initiated by such Director or Officer only if such Proceeding (including any parts of such Proceeding not initiated by such Director or Officer) was authorized in advance by the Board of Directors of the Corporation, unless such Proceeding was brought to enforce such Officer’s or Director’s rights to indemnification or, in the case of Directors, advancement of Expenses under these By-laws in accordance with the provisions set forth herein.

 

SECTION 3.                             Indemnification of Non-Officer Employees .  Subject to the operation of Section 4 of this Article V of these By-laws, each Non-Officer Employee may, in the discretion of the Board of Directors of the Corporation, be indemnified by the Corporation to the fullest extent authorized by the DGCL, as the same exists or may hereafter be amended, against any or all Expenses and Liabilities that are incurred by such Non-Officer Employee or on such Non-Officer Employee’s behalf in connection with any threatened, pending or completed Proceeding, or any claim, issue or matter therein, which such Non-Officer Employee is, or is threatened to be made, a party to or participant in by reason of such Non-Officer Employee’s Corporate Status, if such Non-Officer Employee acted in good faith and in a manner such Non-Officer Employee reasonably believed to be in or not opposed to the best interests of the Corporation and, with respect to any criminal proceeding, had no reasonable cause to believe his or her conduct was unlawful.  The rights of indemnification provided by this Section 3 shall exist as to a Non-

 

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Officer Employee after he or she has ceased to be a Non-Officer Employee and shall inure to the benefit of his or her heirs, personal representatives, executors and administrators.  Notwithstanding the foregoing, the Corporation may indemnify any Non-Officer Employee seeking indemnification in connection with a Proceeding initiated by such Non-Officer Employee only if such Proceeding was authorized in advance by the Board of Directors of the Corporation.

 

SECTION 4.                             Determination .  Unless ordered by a court, no indemnification shall be provided pursuant to this Article V to a Director, to an Officer or to a Non-Officer Employee unless a determination shall have been made that such person acted in good faith and in a manner such person reasonably believed to be in or not opposed to the best interests of the Corporation and, with respect to any criminal Proceeding, such person had no reasonable cause to believe his or her conduct was unlawful.  Such determination shall be made by (a) a majority vote of the Disinterested Directors, even though less than a quorum of the Board of Directors, (b) a committee comprised of Disinterested Directors, such committee having been designated by a majority vote of the Disinterested Directors (even though less than a quorum), (c) if there are no such Disinterested Directors, or if a majority of Disinterested Directors so directs, by independent legal counsel in a written opinion, or (d) by the stockholders of the Corporation.

 

SECTION 5.                             Advancement of Expenses to Directors Prior to Final Disposition .

 

(a)                                  The Corporation shall advance all Expenses incurred by or on behalf of any Director in connection with any Proceeding in which such Director is involved by reason of such Director’s Corporate Status within thirty (30) days after the receipt by the Corporation of a written statement from such Director requesting such advance or advances from time to time, whether prior to or after final disposition of such Proceeding.  Such statement or statements shall reasonably evidence the Expenses incurred by such Director and shall be preceded or accompanied by an undertaking by or on behalf of such Director to repay any Expenses so advanced if it shall ultimately be determined that such Director is not entitled to be indemnified against such Expenses.  Notwithstanding the foregoing, the Corporation shall advance all Expenses incurred by or on behalf of any Director seeking advancement of expenses hereunder in connection with a Proceeding initiated by such Director only if such Proceeding (including any parts of such Proceeding not initiated by such Director) was (i) authorized by the Board of Directors of the Corporation, or (ii) brought to enforce such Director’s rights to indemnification or advancement of Expenses under these By-laws.

 

(b)                                  If a claim for advancement of Expenses hereunder by a Director is not paid in full by the Corporation within thirty (30) days after receipt by the Corporation of documentation of Expenses and the required undertaking, such Director may at any time thereafter bring suit against the Corporation to recover the unpaid amount of the claim and if successful in whole or in part, such Director shall also be entitled to be paid the expenses of prosecuting such claim.  The failure of the Corporation (including its Board of Directors or any committee thereof, independent legal counsel, or stockholders) to make a determination concerning the permissibility of such advancement of Expenses under this Article V shall not be a defense to an action brought by a Director for recovery of the unpaid amount of an advancement claim and

 

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shall not create a presumption that such advancement is not permissible. The burden of proving that a Director is not entitled to an advancement of expenses shall be on the Corporation.

 

(c)                                   In any suit brought by the Corporation to recover an advancement of expenses pursuant to the terms of an undertaking, the Corporation shall be entitled to recover such expenses upon a final adjudication that the Director has not met any applicable standard for indemnification set forth in the DGCL.

 

SECTION 6.                             Advancement of Expenses to Officers and Non-Officer Employees Prior to Final Disposition .

 

(a)                                  The Corporation may, at the discretion of the Board of Directors of the Corporation, advance any or all Expenses incurred by or on behalf of any Officer or any Non-Officer Employee in connection with any Proceeding in which such person is involved by reason of his or her Corporate Status as an Officer or Non-Officer Employee upon the receipt by the Corporation of a statement or statements from such Officer or Non-Officer Employee requesting such advance or advances from time to time, whether prior to or after final disposition of such Proceeding.  Such statement or statements shall reasonably evidence the Expenses incurred by such Officer or Non-Officer Employee and shall be preceded or accompanied by an undertaking by or on behalf of such person to repay any Expenses so advanced if it shall ultimately be determined that such Officer or Non-Officer Employee is not entitled to be indemnified against such Expenses.

 

(b)                                  In any suit brought by the Corporation to recover an advancement of expenses pursuant to the terms of an undertaking, the Corporation shall be entitled to recover such expenses upon a final adjudication that the Officer or Non-Officer Employee has not met any applicable standard for indemnification set forth in the DGCL.

 

SECTION 7.                             Contractual Nature of Rights .

 

(a)                                  The provisions of this Article V shall be deemed to be a contract between the Corporation and each Director and Officer entitled to the benefits hereof at any time while this Article V is in effect, in consideration of such person’s past or current and any future performance of services for the Corporation.  Neither amendment, repeal or modification of any provision of this Article V nor the adoption of any provision of the Certificate of Incorporation inconsistent with this Article V shall eliminate or reduce any right conferred by this Article V in respect of any act or omission occurring, or any cause of action or claim that accrues or arises or any state of facts existing, at the time of or before such amendment, repeal, modification or adoption of an inconsistent provision (even in the case of a proceeding based on such a state of facts that is commenced after such time), and all rights to indemnification and advancement of Expenses granted herein or arising out of any act or omission shall vest at the time of the act or omission in question, regardless of when or if any proceeding with respect to such act or omission is commenced.  The rights to indemnification and to advancement of expenses provided by, or granted pursuant to, this Article V shall continue notwithstanding that the person has ceased to be a director or officer of the Corporation and shall inure to the benefit of the estate, heirs, executors, administrators, legatees and distributes of such person.

 

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(b)                                  If a claim for indemnification hereunder by a Director or Officer is not paid in full by the Corporation within sixty (60) days after receipt by the Corporation of a written claim for indemnification, such Director or Officer may at any time thereafter bring suit against the Corporation to recover the unpaid amount of the claim, and if successful in whole or in part, such Director or Officer shall also be entitled to be paid the expenses of prosecuting such claim.  The failure of the Corporation (including its Board of Directors or any committee thereof, independent legal counsel, or stockholders) to make a determination concerning the permissibility of such indemnification under this Article V shall not be a defense to an action brought by a Director or Officer for recovery of the unpaid amount of an indemnification claim and shall not create a presumption that such indemnification is not permissible.  The burden of proving that a Director or Officer is not entitled to indemnification shall be on the Corporation.

 

(c)                                   In any suit brought by a Director or Officer to enforce a right to indemnification hereunder, it shall be a defense that such Director or Officer has not met any applicable standard for indemnification set forth in the DGCL.

 

SECTION 8.                             Non-Exclusivity of Rights .  The rights to indemnification and to advancement of Expenses set forth in this Article V shall not be exclusive of any other right which any Director, Officer, or Non-Officer Employee may have or hereafter acquire under any statute, provision of the Certificate or these By-laws, agreement, vote of stockholders or Disinterested Directors or otherwise.

 

SECTION 9.                             Insurance .  The Corporation may maintain insurance, at its expense, to protect itself and any Director, Officer or Non-Officer Employee against any liability of any character asserted against or incurred by the Corporation or any such Director, Officer or Non-Officer Employee, or arising out of any such person’s Corporate Status, whether or not the Corporation would have the power to indemnify such person against such liability under the DGCL or the provisions of this Article V.

 

SECTION 10.                      Other Indemnification .  The Corporation’s obligation, if any, to indemnify or provide advancement of Expenses to any person under this Article V as a result of such person serving, at the request of the Corporation, as a director, partner, trustee, officer, employee or agent of another corporation, partnership, joint venture, trust, employee benefit plan or other enterprise shall be reduced by any amount such person may collect as indemnification or advancement of Expenses from such other corporation, partnership, joint venture, trust, employee benefit plan or enterprise (the “Primary Indemnitor”).  Any indemnification or advancement of Expenses under this Article V owed by the Corporation as a result of a person serving, at the request of the Corporation, as a director, partner, trustee, officer, employee or agent of another corporation, partnership, joint venture, trust, employee benefit plan or other enterprise shall only be in excess of, and shall be secondary to, the indemnification or advancement of Expenses available from the applicable Primary Indemnitor(s) and any applicable insurance policies.

 

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ARTICLE VI

 

Miscellaneous Provisions

 

SECTION 1.                             Fiscal Year .  The fiscal year of the Corporation shall be determined by the Board of Directors.

 

SECTION 2.                             Seal .  The Board of Directors shall have power to adopt and alter the seal of the Corporation.

 

SECTION 3.                             Execution of Instruments .  All deeds, leases, transfers, contracts, bonds, notes and other obligations to be entered into by the Corporation in the ordinary course of its business without director action may be executed on behalf of the Corporation by the Chairman of the Board, if one is elected, the President or the Treasurer or any other officer, employee or agent of the Corporation as the Board of Directors or the executive committee of the Board may authorize.

 

SECTION 4.                             Voting of Securities .  Unless the Board of Directors otherwise provides, the Chairman of the Board, if one is elected, the President or the Treasurer may waive notice of and act on behalf of the Corporation (including with regard to voting and actions by written consent), or appoint another person or persons to act as proxy or attorney in fact for the Corporation with or without discretionary power and/or power of substitution, at any meeting of stockholders or shareholders of any other corporation or organization, any of whose securities are held by the Corporation.

 

SECTION 5.                             Resident Agent .  The Board of Directors may appoint a resident agent upon whom legal process may be served in any action or proceeding against the Corporation.

 

SECTION 6.                             Corporate Records .  The original or attested copies of the Certificate, By-laws and records of all meetings of the incorporators, stockholders and the Board of Directors and the stock transfer books, which shall contain the names of all stockholders, their record addresses and the amount of stock held by each, may be kept outside the State of Delaware and shall be kept at the principal office of the Corporation, at an office of its counsel, at an office of its transfer agent or at such other place or places as may be designated from time to time by the Board of Directors.

 

SECTION 7.                             Certificate .  All references in these By-laws to the Certificate shall be deemed to refer to the Amended and Restated Certificate of Incorporation of the Corporation, as amended and/or restated and in effect from time to time.

 

SECTION 8.                             Exclusive Jurisdiction of Delaware Courts .  Unless the Corporation consents in writing to the selection of an alternative forum, the Court of Chancery of the State of Delaware shall be the sole and exclusive forum for (i) any derivative action or proceeding brought on behalf of the Corporation, (ii) any action asserting a claim of breach of a fiduciary

 

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duty owed by any director, officer, stockholder or other employee of the Corporation to the Corporation or the Corporation’s stockholders, (iii) any action asserting a claim arising pursuant to any provision of the Delaware General Corporation Law or the Certificate or By-laws, or (iv) any action asserting a claim against the Corporation governed by the internal affairs doctrine.  Any person or entity purchasing or otherwise acquiring any interest in shares of capital stock of the Corporation shall be deemed to have notice of and consented to the provisions of this Section 8.

 

SECTION 9.                             Amendment of By-laws .

 

(a)                                  Amendment by Directors .  Except as provided otherwise by law, these By-laws may be amended or repealed by the Board of Directors by the affirmative vote of a majority of the directors then in office.

 

(b)                                  Amendment by Stockholders .  These By-laws may be amended or repealed at any Annual Meeting, or special meeting of stockholders called for such purpose in accordance with these By-Laws, by the affirmative vote of at least seventy-five percent (75%) of the voting power of the outstanding shares entitled to vote on such amendment or repeal, voting together as a single class; provided, however, that if the Board of Directors recommends that stockholders approve such amendment or repeal at such meeting of stockholders, such amendment or repeal shall only require the affirmative vote of the majority of the voting power of the outstanding shares entitled to vote on such amendment or repeal, voting together as a single class.  Notwithstanding the foregoing, stockholder approval shall not be required unless mandated by the Certificate, these By-laws, or other applicable law.

 

SECTION 10.                      Notices .  If mailed, notice to stockholders shall be deemed given when deposited in the mail, postage prepaid, directed to the stockholder at such stockholder’s address as it appears on the records of the Corporation.  Without limiting the manner by which notice otherwise may be given to stockholders, any notice to stockholders may be given by electronic transmission in the manner provided in Section 232 of the DGCL.

 

SECTION 11.                      Waivers .  A written waiver of any notice, signed by a stockholder or director, or waiver by electronic transmission by such person, whether given before or after the time of the event for which notice is to be given, shall be deemed equivalent to the notice required to be given to such person.  Neither the business to be transacted at, nor the purpose of, any meeting need be specified in such a waiver.

 

Adopted October 5, 2016, subject to and effective upon the closing of the Corporation’s initial public offering on its Registration Statement on Form S-1.

 

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Exhibit 10.2

RA PHARMACEUTICALS, INC.

 

2016 STOCK AWARD AND INCENTIVE PLAN

 

SECTION 1.  GENERAL PURPOSE OF THE PLAN; DEFINITIONS

 

The name of the plan is the Ra Pharmaceuticals, Inc. 2016 Stock Option and Incentive Plan (the “Plan”).  The purpose of the Plan is to encourage and enable the officers, employees, Non-Employee Directors and Consultants of Ra Pharmaceuticals, Inc. (the “Company”) and its Subsidiaries upon whose judgment, initiative and efforts the Company largely depends for the successful conduct of its business to acquire a proprietary interest in the Company.  It is anticipated that providing such persons with a direct stake in the Company’s welfare will assure a closer identification of their interests with those of the Company and its stockholders, thereby stimulating their efforts on the Company’s behalf and strengthening their desire to remain with the Company.

 

The following terms shall be defined as set forth below:

 

“Act” means the Securities Act of 1933, as amended, and the rules and regulations thereunder.

 

“Administrator” means either the Board or the compensation committee of the Board or a similar committee performing the functions of the compensation committee and which is comprised of not less than two Non-Employee Directors who are independent.

 

“Award” or “Awards,” except where referring to a particular category of grant under the Plan, shall include Incentive Stock Options, Non-Qualified Stock Options, Stock Appreciation Rights, Restricted Stock Units, Restricted Stock Awards, Unrestricted Stock Awards, Cash-Based Awards, Performance Share Awards and Dividend Equivalent Rights.

 

“Award Certificate” means a written or electronic document setting forth the terms and provisions applicable to an Award granted under the Plan.  Each Award Certificate is subject to the terms and conditions of the Plan.

 

“Board” means the Board of Directors of the Company.

 

“Cash-Based Award” means an Award entitling the recipient to receive a cash-denominated payment.

 

“Code” means the Internal Revenue Code of 1986, as amended, and any successor Code, and related rules, regulations and interpretations.

 

“Consultant” means any natural person that provides bona fide services to the Company, and such services are not in connection with the offer or sale of securities in a capital-raising transaction and do not directly or indirectly promote or maintain a market for the Company’s securities.

 



 

“Covered Employee” means an employee who is a “Covered Employee” within the meaning of Section 162(m) of the Code.

 

“Dividend Equivalent Right” means an Award entitling the grantee to receive credits based on cash dividends that would have been paid on the shares of Stock specified in the Dividend Equivalent Right (or other award to which it relates) if such shares had been issued to and held by the grantee.

 

“Effective Date” means the date on which the Plan becomes effective as set forth in Section 22.

 

“Exchange Act” means the Securities Exchange Act of 1934, as amended, and the rules and regulations thereunder.

 

“Fair Market Value” of the Stock on any given date means the fair market value of the Stock determined in good faith by the Administrator; provided, however, that if the Stock is admitted to quotation on the National Association of Securities Dealers Automated Quotation System (“NASDAQ”), NASDAQ Global Market or another national securities exchange, the determination shall be made by reference to market quotations.  If there are no market quotations for such date, the determination shall be made by reference to the last date preceding such date for which there are market quotations; provided further, however, that if the date for which Fair Market Value is determined is the first day when trading prices for the Stock are reported on a national securities exchange, the Fair Market Value shall be the “Price to the Public” (or equivalent) set forth on the cover page for the final prospectus relating to the Company’s Initial Public Offering.

 

“Incentive Stock Option” means any Stock Option designated and qualified as an “incentive stock option” as defined in Section 422 of the Code.

 

“Initial Public Offering” means the first underwritten, firm commitment public offering pursuant to an effective registration statement under the Act covering the offer and sale by the Company of its equity securities, or such other event as a result of or following which the Stock shall be publicly held.

 

“Non-Employee Director” means a member of the Board who is not also an employee of the Company or any Subsidiary.

 

“Non-Qualified Stock Option” means any Stock Option that is not an Incentive Stock Option.

 

“Option” or “Stock Option” means any option to purchase shares of Stock granted pursuant to Section 6.

 

“Performance-Based Award” means any Restricted Stock Award, Restricted Stock Units, Performance Share Award or Cash-Based Award granted to a Covered Employee that is intended to qualify as “performance-based compensation” under Section 162(m) of the Code and the regulations promulgated thereunder.

 

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“Performance Criteria” means the criteria that the Administrator selects for purposes of establishing the Performance Goal or Performance Goals for an individual for a Performance Cycle.  The Performance Criteria (which shall be applicable to the organizational level specified by the Administrator, including, but not limited to, the Company or a unit, division, group, or Subsidiary of the Company) that will be used to establish Performance Goals are limited to the following:  total shareholder return; earnings before interest, taxes, depreciation and amortization; net income (loss) (either before or after interest, taxes, depreciation and/or amortization); changes in the market price of the Stock; economic value-added; development, clinical, regulatory or commercial milestones; funds from operations or similar measure; sales or revenue; acquisitions or strategic transactions; operating income (loss); cash flow (including, but not limited to, operating cash flow and free cash flow); return on capital, assets, equity, or investment; return on sales; gross or net profit levels; productivity; expense; margins; operating efficiency; customer satisfaction; working capital; earnings (loss) per share of Stock; sales or market shares and number of customers, any of which may be measured either in absolute terms or as compared to any incremental increase or as compared to results of a peer group.  The Committee may appropriately adjust any evaluation performance under a Performance Criterion to exclude any of the following events that occurs during a Performance Cycle: (i) asset write-downs or impairments, (ii) litigation or claim judgments or settlements, (iii) the effect of changes in tax law, accounting principles or other such laws or provisions affecting reporting results, (iv) accruals for reorganizations and restructuring programs, and (v) any item of an unusual nature or of a type that indicates infrequency of occurrence, or both, including those described in the Financial Accounting Standards Board’s authoritative guidance and/or in management’s discussion and analysis of financial condition of operations appearing the Company’s annual report to stockholders for the applicable year.

 

“Performance Cycle” means one or more periods of time, which may be of varying and overlapping durations, as the Administrator may select, over which the attainment of one or more Performance Criteria will be measured for the purpose of determining a grantee’s right to and the payment of a Restricted Stock Award, Restricted Stock Units, Performance Share Award or Cash-Based Award, the vesting and/or payment of which is subject to the attainment of one or more Performance Goals.  Each such period shall not be less than 12 months.

 

“Performance Goals” means, for a Performance Cycle, the specific goals established in writing by the Administrator for a Performance Cycle based upon the Performance Criteria.

 

“Performance Share Award” means an Award entitling the recipient to acquire shares of Stock upon the attainment of specified performance goals.

 

“Restricted Shares” means the shares of Stock underlying a Restricted Stock Award that remain subject to a risk of forfeiture or the Company’s right of repurchase.

 

“Restricted Stock Award” means an Award of Restricted Shares subject to such restrictions and conditions as the Administrator may determine at the time of grant.

 

“Restricted Stock Units” means an Award of stock units subject to such restrictions and conditions as the Administrator may determine at the time of grant.

 

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“Sale Event” means (i) the sale of all or substantially all of the assets of the Company on a consolidated basis to an unrelated person or entity, (ii) a merger, reorganization or consolidation pursuant to which the holders of the Company’s outstanding voting power and outstanding stock immediately prior to such transaction do not own a majority of the outstanding voting power and outstanding stock or other equity interests of the resulting or successor entity (or its ultimate parent, if applicable) immediately upon completion of such transaction, (iii) the sale of all of the Stock of the Company to an unrelated person, entity or group thereof acting in concert, or (iv) any other transaction in which the owners of the Company’s outstanding voting power immediately prior to such transaction do not own at least a majority of the outstanding voting power of the Company or any successor entity immediately upon completion of the transaction other than as a result of the acquisition of securities directly from the Company.

 

Sale Price ” means the value as determined by the Administrator of the consideration payable, or otherwise to be received by stockholders, per share of Stock pursuant to a Sale Event.

 

“Section 409A” means Section 409A of the Code and the regulations and other guidance promulgated thereunder.

 

“Stock” means the Common Stock, par value $0.001 per share, of the Company, subject to adjustments pursuant to Section 3.

 

“Stock Appreciation Right” means an Award entitling the recipient to receive shares of Stock having a value equal to the excess of the Fair Market Value of the Stock on the date of exercise over the exercise price of the Stock Appreciation Right multiplied by the number of shares of Stock with respect to which the Stock Appreciation Right shall have been exercised.

 

“Subsidiary” means any corporation or other entity (other than the Company) in which the Company has at least a 50 percent interest, either directly or indirectly.

 

“Ten Percent Owner” means an employee who owns or is deemed to own (by reason of the attribution rules of Section 424(d) of the Code) more than 10 percent of the combined voting power of all classes of stock of the Company or any parent or subsidiary corporation.

 

“Unrestricted Stock Award” means an Award of shares of Stock free of any restrictions.

 

SECTION 2.  ADMINISTRATION OF PLAN; ADMINISTRATOR AUTHORITY TO SELECT GRANTEES AND DETERMINE AWARDS

 

(a)                                  Administration of Plan .  The Plan shall be administered by the Administrator.

 

(b)                                  Powers of Administrator .  The Administrator shall have the power and authority to grant Awards consistent with the terms of the Plan, including the power and authority:

 

(i)                                      to select the individuals to whom Awards may from time to time be granted;

 

(ii)                                   to determine the time or times of grant, and the extent, if any, of Incentive Stock Options, Non-Qualified Stock Options, Stock Appreciation Rights, Restricted Stock

 

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Awards, Restricted Stock Units, Unrestricted Stock Awards, Cash-Based Awards, Performance Share Awards and Dividend Equivalent Rights, or any combination of the foregoing, granted to any one or more grantees;

 

(iii)                                to determine the number of shares of Stock to be covered by any Award;

 

(iv)                               to determine and modify from time to time the terms and conditions, including restrictions, not inconsistent with the terms of the Plan, of any Award, which terms and conditions may differ among individual Awards and grantees, and to approve the forms of Award Certificates;

 

(v)                                  to accelerate at any time the exercisability or vesting of all or any portion of any Award;

 

(vi)                               subject to the provisions of Section 6(c), to extend at any time the period in which Stock Options may be exercised; and

 

(vii)                            at any time to adopt, alter and repeal such rules, guidelines and practices for administration of the Plan and for its own acts and proceedings as it shall deem advisable;

 

(viii)                         to interpret the terms and provisions of the Plan and any Award (including related written instruments);

 

(ix)                               to make all determinations it deems advisable for the administration of the Plan; to decide all disputes arising in connection with the Plan; and

 

(x)                                  to otherwise supervise the administration of the Plan.

 

All decisions and interpretations of the Administrator shall be binding on all persons, including the Company and Plan grantees.

 

(c)                                   Delegation of Authority to Grant Awards .  Subject to applicable law, the Administrator, in its discretion, may delegate to the Chief Executive Officer of the Company, or to a committee consisting of the Chief Executive Officer of the Company and one or more other officers of the Company, all or part of the Administrator’s authority and duties with respect to the granting of Awards to individuals who are (i) not subject to the reporting and other provisions of Section 16 of the Exchange Act and (ii) not Covered Employees.  Any such delegation by the Administrator shall include a limitation as to the amount of Stock underlying Awards that may be granted during the period of the delegation and shall contain guidelines as to the determination of the exercise price and the vesting criteria.  The Administrator may revoke or amend the terms of a delegation at any time but such action shall not invalidate any prior actions of the Administrator’s delegate or delegates that were consistent with the terms of the Plan.

 

(d)                                  Award Certificate .  Awards under the Plan shall be evidenced by Award Certificates that set forth the terms, conditions and limitations for each Award which may include, without limitation, the term of an Award and the provisions applicable in the event employment or service terminates.

 

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(e)                                   Indemnification .  Neither the Board nor the Administrator, nor any member of either or any delegate thereof, shall be liable for any act, omission, interpretation, construction or determination made in good faith in connection with the Plan, and the members of the Board and the Administrator (and any delegate thereof) shall be entitled in all cases to indemnification and reimbursement by the Company in respect of any claim, loss, damage or expense (including, without limitation, reasonable attorneys’ fees) arising or resulting therefrom to the fullest extent permitted by law and/or under the Company’s articles or bylaws or any directors’ and officers’ liability insurance coverage which may be in effect from time to time and/or any indemnification agreement between such individual and the Company.

 

(f)                                    Foreign Award Recipients .  Notwithstanding any provision of the Plan to the contrary, in order to comply with the laws in other countries in which the Company and its Subsidiaries operate or have employees or other individuals eligible for Awards, the Administrator, in its sole discretion, shall have the power and authority to:  (i) determine which Subsidiaries shall be covered by the Plan; (ii) determine which individuals outside the United States are eligible to participate in the Plan; (iii) modify the terms and conditions of any Award granted to individuals outside the United States to comply with applicable foreign laws; (iv) establish subplans and modify exercise procedures and other terms and procedures, to the extent the Administrator determines such actions to be necessary or advisable (and such subplans and/or modifications shall be attached to this Plan as appendices); provided, however, that no such subplans and/or modifications shall increase the share limitations contained in Section 3(a) hereof; and (v) take any action, before or after an Award is made, that the Administrator determines to be necessary or advisable to obtain approval or comply with any local governmental regulatory exemptions or approvals.  Notwithstanding the foregoing, the Administrator may not take any actions hereunder, and no Awards shall be granted, that would violate the Exchange Act or any other applicable United States securities law, the Code, or any other applicable United States governing statute or law.

 

SECTION 3.  STOCK ISSUABLE UNDER THE PLAN; MERGERS; SUBSTITUTION

 

(a)                                  Stock Issuable .  The maximum number of shares of Stock reserved and available for issuance under the Plan shall be 1,300,000 shares (the “Initial Limit”), subject to adjustment as provided in Section 3(b), plus on January 1, 2017 and each January 1 thereafter through the tenth anniversary of the Effective Date, the number of shares of Stock reserved and available for issuance under the Plan shall be cumulatively increased by the least of (i) four percent (4%) of the number of shares of Stock issued and outstanding on the immediately preceding December 31, (ii) 2,000,000 shares, and (iii) such lesser amount determined by the Administrator (the “Annual Increase”).  Subject to such overall limitation, the maximum aggregate number of shares of Stock that may be issued in the form of Incentive Stock Options shall not exceed the Initial Limit cumulatively increased on January 1, 2017 and on each January 1 thereafter by the lesser of the Annual Increase for such year or 1,300,000 shares of Stock, subject in all cases to adjustment as provided in Section 3(b).  For purposes of this limitation, the shares of Stock underlying any Awards that are forfeited, canceled, held back upon exercise of an Option or settlement of an Award to cover the exercise price or tax withholding, reacquired by the Company prior to vesting, satisfied without the issuance of Stock or otherwise terminated under this Plan or the Company’s 2010 Stock Option and Grant Plan, as amended (other than by exercise) shall be added back to the shares of Stock available for issuance under the Plan.  In the

 

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event the Company repurchases shares of Stock on the open market, such shares shall not be added to the shares of Stock available for issuance under the Plan.  Subject to such overall limitations, shares of Stock may be issued up to such maximum number pursuant to any type or types of Award; provided, however, that Stock Options or Stock Appreciation Rights with respect to no more than 1,300,000 shares of Stock may be granted to any one individual grantee (other than a Non-Employee Director) during any one calendar year period and the maximum Performance-Based Award payable to any one Covered Employee under the Plan for a Performance Cycle is no more than 1,300,000 shares of Stock (subject to adjustment as provided in Section 3(b) hereof) or $2,000,000 in the case of a Performance-Based Award that is a Cash-Based Award.  The shares available for issuance under the Plan may be authorized but unissued shares of Stock or shares of Stock reacquired by the Company.

 

(b)                                  Changes in Stock .  Subject to Section 3(c) hereof, if, as a result of any reorganization, recapitalization, reclassification, stock dividend, stock split, reverse stock split or other similar change in the Company’s capital stock, the outstanding shares of Stock are increased or decreased or are exchanged for a different number or kind of shares or other securities of the Company, or additional shares or new or different shares or other securities of the Company or other non-cash assets are distributed with respect to such shares of Stock or other securities, or, if, as a result of any merger or consolidation, sale of all or substantially all of the assets of the Company, the outstanding shares of Stock are converted into or exchanged for securities of the Company or any successor entity (or a parent or subsidiary thereof), the Administrator shall make an appropriate or proportionate adjustment in (i) the maximum number of shares reserved for issuance under the Plan, including the maximum number of shares that may be issued in the form of Incentive Stock Options, (ii) the number of Stock Options or Stock Appreciation Rights that can be granted to any one individual grantee and the maximum number of shares that may be granted under a Performance-Based Award, (iii) the number and kind of shares or other securities subject to any then outstanding Awards under the Plan, (iv) the repurchase price, if any, per share subject to each outstanding Restricted Stock Award, and (v) the exercise price for each share subject to any then outstanding Stock Options and Stock Appreciation Rights under the Plan, without changing the aggregate exercise price (i.e., the exercise price multiplied by the number of Stock Options and Stock Appreciation Rights) as to which such Stock Options and Stock Appreciation Rights remain exercisable.  The Administrator shall also make equitable or proportionate adjustments in the number of shares subject to outstanding Awards and the exercise price and the terms of outstanding Awards to take into consideration cash dividends paid other than in the ordinary course or any other extraordinary corporate event.  The adjustment by the Administrator shall be final, binding and conclusive.  No fractional shares of Stock shall be issued under the Plan resulting from any such adjustment, but the Administrator in its discretion may make a cash payment in lieu of fractional shares.

 

(c)                                   Mergers and Other Transactions .  In the case of and subject to the consummation of a Sale Event, the parties thereto may cause the assumption or continuation of Awards theretofore granted by the successor entity, or the substitution of such Awards with new Awards of the successor entity or parent thereof, with appropriate adjustment as to the number and kind of shares and, if appropriate, the per share exercise prices, as such parties shall agree.  To the extent the parties to such Sale Event do not provide for the assumption, continuation or substitution of Awards, upon the effective time of the Sale Event, the Plan and all outstanding Awards granted hereunder shall terminate.  In such case, except as may be otherwise provided in

 

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the relevant Award Certificate, all Options and Stock Appreciation Rights that are not exercisable immediately prior to the effective time of the Sale Event shall become fully exercisable as of the effective time of the Sale Event, all other Awards with time-based vesting, conditions or restrictions shall become fully vested and nonforfeitable as of the effective time of the Sale Event, and all Awards with conditions and restrictions relating to the attainment of performance goals may become vested and nonforfeitable in connection with a Sale Event in the Administrator’s discretion or to the extent specified in the relevant Award Certificate.  In the event of such termination, (i) the Company shall have the option (in its sole discretion) to make or provide for a payment, in cash or in kind, to the grantees holding Options and Stock Appreciation Rights, in exchange for the cancellation thereof, in an amount equal to the difference between (A) the Sale Price multiplied by the number of shares of Stock subject to outstanding Options and Stock Appreciation Rights (to the extent then exercisable  at prices not in excess of the Sale Price) and (B) the aggregate exercise price of all such outstanding Options and Stock Appreciation Rights; or (ii) each grantee shall be permitted, within a specified period of time prior to the consummation of the Sale Event as determined by the Administrator, to exercise all outstanding Options and Stock Appreciation Rights (to the extent then exercisable) held by such grantee.  The Company shall also have the option (in its sole discretion) to make or provide for a payment, in cash or in kind, to the grantees holding other Awards in an amount equal to the Sale Price multiplied by the number of vested shares of Stock under such Awards.

 

SECTION 4.  MAXIMUM AWARDS TO NON-EMPLOYEE DIRECTORS

 

Notwithstanding anything to the contrary in this Plan, the maximum Award that may be issued under this Plan to any Non-Employee Director in any calendar year shall not exceed 100,000 shares.

 

SECTION 5.  ELIGIBILITY

 

Grantees under the Plan will be such full or part-time officers and other employees, Non-Employee Directors and Consultants of the Company and its Subsidiaries as are selected from time to time by the Administrator in its sole discretion.

 

SECTION 6.  STOCK OPTIONS

 

(a)                                  Award of Stock Options .  The Administrator may grant Stock Options under the Plan.  Any Stock Option granted under the Plan shall be in such form as the Administrator may from time to time approve.

 

Stock Options granted under the Plan may be either Incentive Stock Options or Non-Qualified Stock Options.  Incentive Stock Options may be granted only to employees of the Company or any Subsidiary that is a “subsidiary corporation” within the meaning of Section 424(f) of the Code.  To the extent that any Option does not qualify as an Incentive Stock Option, it shall be deemed a Non-Qualified Stock Option.

 

Stock Options granted pursuant to this Section 6 shall be subject to the following terms and conditions and shall contain such additional terms and conditions, not inconsistent with the terms of the Plan, as the Administrator shall deem desirable.  If the Administrator so determines,

 

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Stock Options may be granted in lieu of cash compensation at the optionee’s election, subject to such terms and conditions as the Administrator may establish.

 

(b)                                  Exercise Price .  The exercise price per share for the Stock covered by a Stock Option granted pursuant to this Section 6 shall be determined by the Administrator at the time of grant but shall not be less than 100 percent of the Fair Market Value on the date of grant.  In the case of an Incentive Stock Option that is granted to a Ten Percent Owner, the option price of such Incentive Stock Option shall be not less than 110 percent of the Fair Market Value on the grant date.

 

(c)                                   Option Term .  The term of each Stock Option shall be fixed by the Administrator, but no Stock Option shall be exercisable more than ten years after the date the Stock Option is granted.  In the case of an Incentive Stock Option that is granted to a Ten Percent Owner, the term of such Stock Option shall be no more than five years from the date of grant.

 

(d)                                  Exercisability; Rights of a Stockholder .  Stock Options shall become exercisable at such time or times, whether or not in installments, as shall be determined by the Administrator at or after the grant date.  The Administrator may at any time accelerate the exercisability of all or any portion of any Stock Option.  An optionee shall have the rights of a stockholder only as to shares acquired upon the exercise of a Stock Option and not as to unexercised Stock Options.

 

(e)                                   Method of Exercise .  Stock Options may be exercised in whole or in part, by giving written or electronic notice of exercise to the Company, specifying the number of shares to be purchased.  Payment of the purchase price may be made by one or more of the following methods except to the extent otherwise provided in the Option Award Certificate:

 

(i)                                      In cash, by certified or bank check or other instrument acceptable to the Administrator;

 

(ii)                                   Through the delivery (or attestation to the ownership following such procedures as the Company may prescribe) of shares of Stock that are not then subject to restrictions under any Company plan.  Such surrendered shares shall be valued at Fair Market Value on the exercise date;

 

(iii)                                By the optionee delivering to the Company a properly executed exercise notice together with irrevocable instructions to a broker to promptly deliver to the Company cash or a check payable and acceptable to the Company for the purchase price; provided that in the event the optionee chooses to pay the purchase price as so provided, the optionee and the broker shall comply with such procedures and enter into such agreements of indemnity and other agreements as the Company shall prescribe as a condition of such payment procedure; or

 

(iv)                               With respect to Stock Options that are not Incentive Stock Options, by a “net exercise” arrangement pursuant to which the Company will reduce the number of shares of Stock issuable upon exercise by the largest whole number of shares with a Fair Market Value that does not exceed the aggregate exercise price.

 

Payment instruments will be received subject to collection.  The transfer to the optionee on the records of the Company or of the transfer agent of the shares of Stock to be purchased pursuant

 

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to the exercise of a Stock Option will be contingent upon receipt from the optionee (or a purchaser acting in his stead in accordance with the provisions of the Stock Option) by the Company of the full purchase price for such shares and the fulfillment of any other requirements contained in the Option Award Certificate or applicable provisions of laws (including the satisfaction of any withholding taxes that the Company is obligated to withhold with respect to the optionee).  In the event an optionee chooses to pay the purchase price by previously-owned shares of Stock through the attestation method, the number of shares of Stock transferred to the optionee upon the exercise of the Stock Option shall be net of the number of attested shares.  In the event that the Company establishes, for itself or using the services of a third party, an automated system for the exercise of Stock Options, such as a system using an internet website or interactive voice response, then the paperless exercise of Stock Options may be permitted through the use of such an automated system.

 

(f)                                    Annual Limit on Incentive Stock Options .  To the extent required for “incentive stock option” treatment under Section 422 of the Code, the aggregate Fair Market Value (determined as of the time of grant) of the shares of Stock with respect to which Incentive Stock Options granted under this Plan and any other plan of the Company or its parent and subsidiary corporations become exercisable for the first time by an optionee during any calendar year shall not exceed $100,000.  To the extent that any Stock Option exceeds this limit, it shall constitute a Non-Qualified Stock Option.

 

SECTION 7.  STOCK APPRECIATION RIGHTS

 

(a)                                  Award of Stock Appreciation Rights .  The Administrator may grant Stock Appreciation Rights under the Plan.  A Stock Appreciation Right is an Award entitling the recipient to receive shares of Stock having a value equal to the excess of the Fair Market Value of a share of Stock on the date of exercise over the exercise price of the Stock Appreciation Right multiplied by the number of shares of Stock with respect to which the Stock Appreciation Right shall have been exercised.

 

(b)                                  Exercise Price of Stock Appreciation Rights .  The exercise price of a Stock Appreciation Right shall not be less than 100 percent of the Fair Market Value of the Stock on the date of grant.

 

(c)                                   Grant and Exercise of Stock Appreciation Rights .  Stock Appreciation Rights may be granted by the Administrator independently of any Stock Option granted pursuant to Section 6 of the Plan.

 

(d)                                  Terms and Conditions of Stock Appreciation Rights .  Stock Appreciation Rights shall be subject to such terms and conditions as shall be determined from time to time by the Administrator.  The term of a Stock Appreciation Right may not exceed ten years.  The terms and conditions of each such Award shall be determined by the Administrator, and such terms and conditions may differ among individual Awards and grantees.

 

SECTION 8.  RESTRICTED STOCK AWARDS

 

(a)                                  Nature of Restricted Stock Awards .  The Administrator may grant Restricted Stock Awards under the Plan.  A Restricted Stock Award is any Award of Restricted Shares

 

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subject to such restrictions and conditions as the Administrator may determine at the time of grant.  Conditions may be based on continuing employment (or other service relationship) and/or achievement of pre-established performance goals and objectives.  The terms and conditions of each such Award shall be determined by the Administrator, and such terms and conditions may differ among individual Awards and grantees.

 

(b)                                  Rights as a Stockholder .  Upon the grant of the Restricted Stock Award and payment of any applicable purchase price, a grantee shall have the rights of a stockholder with respect to the voting of the Restricted Shares and receipt of dividends; provided that if the lapse of restrictions with respect to the Restricted Stock Award is tied to the attainment of performance goals, any dividends paid by the Company during the performance period shall accrue and shall not be paid to the grantee until and to the extent the performance goals are met with respect to the Restricted Stock Award.  Unless the Administrator shall otherwise determine, (i) uncertificated Restricted Shares shall be accompanied by a notation on the records of the Company or the transfer agent to the effect that they are subject to forfeiture until such Restricted Shares are vested as provided in Section 8(d) below, and (ii) certificated Restricted Shares shall remain in the possession of the Company until such Restricted Shares are vested as provided in Section 8(d) below, and the grantee shall be required, as a condition of the grant, to deliver to the Company such instruments of transfer as the Administrator may prescribe.

 

(c)                                   Restrictions .  Restricted Shares may not be sold, assigned, transferred, pledged or otherwise encumbered or disposed of except as specifically provided herein or in the Restricted Stock Award Certificate.  Except as may otherwise be provided by the Administrator either in the Award Certificate or, subject to Section 19 below, in writing after the Award is issued, if a grantee’s employment (or other service relationship) with the Company and its Subsidiaries terminates for any reason, any Restricted Shares that have not vested at the time of termination shall automatically and without any requirement of notice to such grantee from or other action by or on behalf of, the Company be deemed to have been reacquired by the Company at its original purchase price (if any) from such grantee or such grantee’s legal representative simultaneously with such termination of employment (or other service relationship), and thereafter shall cease to represent any ownership of the Company by the grantee or rights of the grantee as a stockholder.  Following such deemed reacquisition of Restricted Shares that are represented by physical certificates, a grantee shall surrender such certificates to the Company upon request without consideration.

 

(d)                                  Vesting of Restricted Shares .  The Administrator at the time of grant shall specify the date or dates and/or the attainment of pre-established performance goals, objectives and other conditions on which the non-transferability of the Restricted Shares and the Company’s right of repurchase or forfeiture shall lapse.  Subsequent to such date or dates and/or the attainment of such pre-established performance goals, objectives and other conditions, the shares on which all restrictions have lapsed shall no longer be Restricted Shares and shall be deemed “vested.”

 

SECTION 9.  RESTRICTED STOCK UNITS

 

(a)                                  Nature of Restricted Stock Units .  The Administrator may grant Restricted Stock Units under the Plan.  A Restricted Stock Unit is an Award of stock units that may be settled in shares of Stock upon the satisfaction of such restrictions and conditions at the time of grant.

 

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Conditions may be based on continuing employment (or other service relationship) and/or achievement of pre-established performance goals and objectives.  The terms and conditions of each such Award shall be determined by the Administrator, and such terms and conditions may differ among individual Awards and grantees.  Except in the case of Restricted Stock Units with a deferred settlement date that complies with Section 409A, at the end of the vesting period, the Restricted Stock Units, to the extent vested, shall be settled in the form of shares of Stock.  Restricted Stock Units with deferred settlement dates are subject to Section 409A and shall contain such additional terms and conditions as the Administrator shall determine in its sole discretion in order to comply with the requirements of Section 409A.

 

(b)                                  Election to Receive Restricted Stock Units in Lieu of Compensation .  The Administrator may, in its sole discretion, permit a grantee to elect to receive a portion of future cash compensation otherwise due to such grantee in the form of an award of Restricted Stock Units.  Any such election shall be made in writing and shall be delivered to the Company no later than the date specified by the Administrator and in accordance with Section 409A and such other rules and procedures established by the Administrator.  Any such future cash compensation that the grantee elects to defer shall be converted to a fixed number of Restricted Stock Units based on the Fair Market Value of Stock on the date the compensation would otherwise have been paid to the grantee if such payment had not been deferred as provided herein.  The Administrator shall have the sole right to determine whether and under what circumstances to permit such elections and to impose such limitations and other terms and conditions thereon as the Administrator deems appropriate.  Any Restricted Stock Units that are elected to be received in lieu of cash compensation shall be fully vested, unless otherwise provided in the Award Certificate.

 

(c)                                   Rights as a Stockholder .  A grantee shall have the rights as a stockholder only as to shares of Stock acquired by the grantee upon settlement of Restricted Stock Units; provided, however, that the grantee may be credited with Dividend Equivalent Rights with respect to the stock units underlying his Restricted Stock Units, subject to the provisions of Section 14 and such terms and conditions as the Administrator may determine.

 

(d)                                  Termination .  Except as may otherwise be provided by the Administrator either in the Award Certificate or, subject to Section 19 below, in writing after the Award is issued, a grantee’s right in all Restricted Stock Units that have not vested shall automatically terminate upon the grantee’s termination of employment (or cessation of service relationship) with the Company and its Subsidiaries for any reason.

 

SECTION 10.  UNRESTRICTED STOCK AWARDS

 

Grant or Sale of Unrestricted Stock .  The Administrator may grant (or sell at par value or such higher purchase price determined by the Administrator) an Unrestricted Stock Award under the Plan.  An Unrestricted Stock Award is an Award pursuant to which the grantee may receive shares of Stock free of any restrictions under the Plan.  Unrestricted Stock Awards may be granted in respect of past services or other valid consideration, or in lieu of cash compensation due to such grantee.

 

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SECTION 11.  CASH-BASED AWARDS

 

Grant of Cash-Based Awards .  The Administrator may grant Cash-Based Awards under the Plan.  A Cash-Based Award is an Award that entitles the grantee to a payment in cash upon the attainment of specified Performance Goals.  The Administrator shall determine the maximum duration of the Cash-Based Award, the amount of cash to which the Cash-Based Award pertains, the conditions upon which the Cash-Based Award shall become vested or payable, and such other provisions as the Administrator shall determine.  Each Cash-Based Award shall specify a cash-denominated payment amount, formula or payment ranges as determined by the Administrator.  Payment, if any, with respect to a Cash-Based Award shall be made in accordance with the terms of the Award and may be made in cash.

 

SECTION 12.  PERFORMANCE SHARE AWARDS

 

(a)                                  Nature of Performance Share Awards .  The Administrator may grant Performance Share Awards under the Plan.  A Performance Share Award is an Award entitling the grantee to receive shares of Stock upon the attainment of performance goals.  The Administrator shall determine whether and to whom Performance Share Awards shall be granted, the performance goals, the periods during which performance is to be measured, which may not be less than one year except in the case of a Sale Event, and such other limitations and conditions as the Administrator shall determine.

 

(b)                                  Rights as a Stockholder .  A grantee receiving a Performance Share Award shall have the rights of a stockholder only as to shares of Stock actually received by the grantee under the Plan and not with respect to shares subject to the Award but not actually received by the grantee.  A grantee shall be entitled to receive shares of Stock under a Performance Share Award only upon satisfaction of all conditions specified in the Performance Share Award Certificate (or in a performance plan adopted by the Administrator).

 

(c)                                   Termination .  Except as may otherwise be provided by the Administrator either in the Award agreement or, subject to Section 19 below, in writing after the Award is issued, a grantee’s rights in all Performance Share Awards shall automatically terminate upon the grantee’s termination of employment (or cessation of service relationship) with the Company and its Subsidiaries for any reason.

 

SECTION 13.  PERFORMANCE-BASED AWARDS TO COVERED EMPLOYEES

 

(a)                                  Performance-Based Awards .  The Administrator may grant one or more Performance-Based Awards in the form of a Restricted Stock Award, Restricted Stock Units, Performance Share Awards or Cash-Based Award payable upon the attainment of Performance Goals that are established by the Administrator and relate to one or more of the Performance Criteria, in each case on a specified date or dates or over any period or periods determined by the Administrator.  The Administrator shall define in an objective fashion the manner of calculating the Performance Criteria it selects to use for any Performance Cycle.  Depending on the Performance Criteria used to establish such Performance Goals, the Performance Goals may be expressed in terms of overall Company performance or the performance of a division, business

 

13



 

unit, or an individual.  Each Performance-Based Award shall comply with the provisions set forth below.

 

(b)                                  Grant of Performance-Based Awards .  With respect to each Performance-Based Award granted to a Covered Employee, the Administrator shall select, within the first 90 days of a Performance Cycle (or, if shorter, within the maximum period allowed under Section 162(m) of the Code) the Performance Criteria for such grant, and the Performance Goals with respect to each Performance Criterion (including a threshold level of performance below which no amount will become payable with respect to such Award).  Each Performance-Based Award will specify the amount payable, or the formula for determining the amount payable, upon achievement of the various applicable performance targets.  The Performance Criteria established by the Administrator may be (but need not be) different for each Performance Cycle and different Performance Goals may be applicable to Performance-Based Awards to different Covered Employees.

 

(c)                                   Payment of Performance-Based Awards .  Following the completion of a Performance Cycle, the Administrator shall meet to review and certify in writing whether, and to what extent, the Performance Goals for the Performance Cycle have been achieved and, if so, to also calculate and certify in writing the amount of the Performance-Based Awards earned for the Performance Cycle.  The Administrator shall then determine the actual size of each Covered Employee’s Performance-Based Award.

 

(d)                                  Maximum Award Payable .  The maximum Performance-Based Award payable to any one Covered Employee under the Plan for a Performance Cycle is 1,300,000 shares of Stock (subject to adjustment as provided in Section 3(b) hereof) or $2,000,000 in the case of a Performance-Based Award that is a Cash-Based Award.

 

SECTION 14.  DIVIDEND EQUIVALENT RIGHTS

 

(a)                                  Dividend Equivalent Rights .  The Administrator may grant Dividend Equivalent Rights under the Plan.  A Dividend Equivalent Right is an Award entitling the grantee to receive credits based on cash dividends that would have been paid on the shares of Stock specified in the Dividend Equivalent Right (or other Award to which it relates) if such shares had been issued to the grantee.  A Dividend Equivalent Right may be granted hereunder to any grantee as a component of an award of Restricted Stock Units or Performance Share Award or as a freestanding award.  The terms and conditions of Dividend Equivalent Rights shall be specified in the Award Certificate.  Dividend equivalents credited to the holder of a Dividend Equivalent Right may be paid currently or may be deemed to be reinvested in additional shares of Stock, which may thereafter accrue additional equivalents.  Any such reinvestment shall be at Fair Market Value on the date of reinvestment or such other price as may then apply under a dividend reinvestment plan sponsored by the Company, if any.  Dividend Equivalent Rights may be settled in cash or shares of Stock or a combination thereof, in a single installment or installments.  A Dividend Equivalent Right granted as a component of an Award of Restricted Stock Units or Performance Share Award shall provide that such Dividend Equivalent Right shall be settled only upon settlement or payment of, or lapse of restrictions on, such other Award, and that such Dividend Equivalent Right shall expire or be forfeited or annulled under the same conditions as such other Award.

 

14



 

(b)                                  Termination .  Except as may otherwise be provided by the Administrator either in the Award Certificate or, subject to Section 19 below, in writing after the Award is issued, a grantee’s rights in all Dividend Equivalent Rights shall automatically terminate upon the grantee’s termination of employment (or cessation of service relationship) with the Company and its Subsidiaries for any reason.

 

SECTION 15.  TRANSFERABILITY OF AWARDS

 

(a)                                  Transferability .  Except as provided in Section 15(b) below, during a grantee’s lifetime, his or her Awards shall be exercisable only by the grantee, or by the grantee’s legal representative or guardian in the event of the grantee’s incapacity.  No Awards shall be sold, assigned, transferred or otherwise encumbered or disposed of by a grantee other than by will or by the laws of descent and distribution or pursuant to a domestic relations order.  No Awards shall be subject, in whole or in part, to attachment, execution, or levy of any kind, and any purported transfer in violation hereof shall be null and void.

 

(b)                                  Administrator Action .  Notwithstanding Section 15(a), the Administrator, in its discretion, may provide either in the Award Certificate regarding a given Award or by subsequent written approval that the grantee (who is an employee or director) may transfer his or her Non-Qualified Stock Options to his or her immediate family members, to trusts for the benefit of such family members, or to partnerships in which such family members are the only partners, provided that the transferee agrees in writing with the Company to be bound by all of the terms and conditions of this Plan and the applicable Award.  In no event may an Award be transferred by a grantee for value.

 

(c)                                   Family Member .  For purposes of Section 15(b), “family member” shall mean a grantee’s child, stepchild, grandchild, parent, stepparent, grandparent, spouse, former spouse, sibling, niece, nephew, mother-in-law, father-in-law, son-in-law, daughter-in-law, brother-in-law, or sister-in-law, including adoptive relationships, any person sharing the grantee’s household (other than a tenant of the grantee), a trust in which these persons (or the grantee) have more than 50 percent of the beneficial interest, a foundation in which these persons (or the grantee) control the management of assets, and any other entity in which these persons (or the grantee) own more than 50 percent of the voting interests.

 

(d)                                  Designation of Beneficiary .  To the extent permitted by the Company, each grantee to whom an Award has been made under the Plan may designate a beneficiary or beneficiaries to exercise any Award or receive any payment under any Award payable on or after the grantee’s death.  Any such designation shall be on a form provided for that purpose by the Administrator and shall not be effective until received by the Administrator.  If no beneficiary has been designated by a deceased grantee, or if the designated beneficiaries have predeceased the grantee, the beneficiary shall be the grantee’s estate.

 

SECTION 16.  TAX WITHHOLDING

 

(a)                                  Payment by Grantee .  Each grantee shall, no later than the date as of which the value of an Award or of any Stock or other amounts received thereunder first becomes includable in the gross income of the grantee for Federal income tax purposes, pay to the

 

15



 

Company, or make arrangements satisfactory to the Administrator regarding payment of, any Federal, state, or local taxes of any kind required by law to be withheld by the Company with respect to such income.  The Company and its Subsidiaries shall, to the extent permitted by law, have the right to deduct any such taxes from any payment of any kind otherwise due to the grantee.  The Company’s obligation to deliver evidence of book entry (or stock certificates) to any grantee is subject to and conditioned on tax withholding obligations being satisfied by the grantee.

 

(b)                                  Payment in Stock .  Subject to approval by the Administrator, a grantee may elect to have the Company’s minimum required tax withholding obligation satisfied, in whole or in part, by authorizing the Company to withhold from shares of Stock to be issued pursuant to any Award a number of shares with an aggregate Fair Market Value (as of the date the withholding is effected) that would satisfy the withholding amount due.  The Administrator may also require Awards to be subject to mandatory share withholding up to the required withholding amount.  For purposes of share withholding, the Fair Market Value of withheld shares shall be determined in the same manner as the value of Stock includible in income of the Participants.

 

SECTION 17.  SECTION 409A AWARDS

 

To the extent that any Award is determined to constitute “nonqualified deferred compensation” within the meaning of Section 409A (a “409A Award”), the Award shall be subject to such additional rules and requirements as specified by the Administrator from time to time in order to comply with Section 409A.  In this regard, if any amount under a 409A Award is payable upon a “separation from service” (within the meaning of Section 409A) to a grantee who is then considered a “specified employee” (within the meaning of Section 409A), then no such payment shall be made prior to the date that is the earlier of (i) six months and one day after the grantee’s separation from service, or (ii) the grantee’s death, but only to the extent such delay is necessary to prevent such payment from being subject to interest, penalties and/or additional tax imposed pursuant to Section 409A.  Further, the settlement of any such Award may not be accelerated except to the extent permitted by Section 409A.

 

SECTION 18.  TERMINATION OF EMPLOYMENT, TRANSFER, LEAVE OF ABSENCE, ETC.

 

(a)                                  Termination of Employment .  If the grantee’s employer ceases to be a Subsidiary, the grantee shall be deemed to have terminated employment for purposes of the Plan.

 

(b)                                  For purposes of the Plan, the following events shall not be deemed a termination of employment:

 

(i)                                      a transfer to the employment of the Company from a Subsidiary or from the Company to a Subsidiary, or from one Subsidiary to another; or

 

(ii)                                   an approved leave of absence for military service or sickness, or for any other purpose approved by the Company, if the employee’s right to re-employment is guaranteed either by a statute or by contract or under the policy pursuant to which the leave of absence was granted or if the Administrator otherwise so provides in writing.

 

16



 

SECTION 19.  AMENDMENTS AND TERMINATION

 

The Board may, at any time, amend or discontinue the Plan and the Administrator may, at any time, amend or cancel any outstanding Award for the purpose of satisfying changes in law or for any other lawful purpose, but no such action shall adversely affect rights under any outstanding Award without the holder’s consent.  The Administrator is specifically authorized to exercise its discretion to reduce the exercise price of outstanding Stock Options or Stock Appreciation Rights or effect the repricing of such Awards through cancellation and re-grants.  To the extent required under the rules of any securities exchange or market system on which the Stock is listed, to the extent determined by the Administrator to be required by the Code to ensure that Incentive Stock Options granted under the Plan are qualified under Section 422 of the Code, or to ensure that compensation earned under Awards qualifies as performance-based compensation under Section 162(m) of the Code, Plan amendments shall be subject to approval by the Company stockholders entitled to vote at a meeting of stockholders.  Nothing in this Section 19 shall limit the Administrator’s authority to take any action permitted pursuant to Section 3(b) or 3(c).

 

SECTION 20.  STATUS OF PLAN

 

With respect to the portion of any Award that has not been exercised and any payments in cash, Stock or other consideration not received by a grantee, a grantee shall have no rights greater than those of a general creditor of the Company unless the Administrator shall otherwise expressly determine in connection with any Award or Awards.  In its sole discretion, the Administrator may authorize the creation of trusts or other arrangements to meet the Company’s obligations to deliver Stock or make payments with respect to Awards hereunder, provided that the existence of such trusts or other arrangements is consistent with the foregoing sentence.

 

SECTION 21.  GENERAL PROVISIONS

 

(a)                                  No Distribution .  The Administrator may require each person acquiring Stock pursuant to an Award to represent to and agree with the Company in writing that such person is acquiring the shares without a view to distribution thereof.

 

(b)                                  Delivery of Stock Certificates .  Stock certificates to grantees under this Plan shall be deemed delivered for all purposes when the Company or a stock transfer agent of the Company shall have mailed such certificates in the United States mail, addressed to the grantee, at the grantee’s last known address on file with the Company.  Uncertificated Stock shall be deemed delivered for all purposes when the Company or a Stock transfer agent of the Company shall have given to the grantee by electronic mail (with proof of receipt) or by United States mail, addressed to the grantee, at the grantee’s last known address on file with the Company, notice of issuance and recorded the issuance in its records (which may include electronic “book entry” records).  Notwithstanding anything herein to the contrary, the Company shall not be required to issue or deliver any certificates evidencing shares of Stock pursuant to the exercise of any Award, unless and until the Administrator has determined, with advice of counsel (to the extent the Administrator deems such advice necessary or advisable), that the issuance and delivery of such certificates is in compliance with all applicable laws, regulations of governmental authorities and, if applicable, the requirements of any exchange on which the

 

17



 

shares of Stock are listed, quoted or traded.  All Stock certificates delivered pursuant to the Plan shall be subject to any stop-transfer orders and other restrictions as the Administrator deems necessary or advisable to comply with federal, state or foreign jurisdiction, securities or other laws, rules and quotation system on which the Stock is listed, quoted or traded.  The Administrator may place legends on any Stock certificate to reference restrictions applicable to the Stock.  In addition to the terms and conditions provided herein, the Administrator may require that an individual make such reasonable covenants, agreements, and representations as the Administrator, in its discretion, deems necessary or advisable in order to comply with any such laws, regulations, or requirements.  The Administrator shall have the right to require any individual to comply with any timing or other restrictions with respect to the settlement or exercise of any Award, including a window-period limitation, as may be imposed in the discretion of the Administrator.

 

(c)                                   Stockholder Rights .  Until Stock is deemed delivered in accordance with Section 21(b), no right to vote or receive dividends or any other rights of a stockholder will exist with respect to shares of Stock to be issued in connection with an Award, notwithstanding the exercise of a Stock Option or any other action by the grantee with respect to an Award.

 

(d)                                  Other Compensation Arrangements; No Employment Rights .  Nothing contained in this Plan shall prevent the Board from adopting other or additional compensation arrangements, including trusts, and such arrangements may be either generally applicable or applicable only in specific cases.  The adoption of this Plan and the grant of Awards do not confer upon any employee any right to continued employment with the Company or any Subsidiary.

 

(e)                                   Trading Policy Restrictions .  Option exercises and other Awards under the Plan shall be subject to the Company’s insider trading policies and procedures, as in effect from time to time.

 

(f)                                    Clawback Policy .  Awards under the Plan shall be subject to the Company’s clawback policy, as in effect from time to time.

 

SECTION 22.  EFFECTIVE DATE OF PLAN

 

This Plan shall become effective on the date of the effectiveness of the Company’s Registration Statement on Form S-1 in connection with the Company’s Initial Public Offering following stockholder approval in accordance with applicable state law, the Company’s bylaws and articles of incorporation, and applicable stock exchange rules or pursuant to written consent.  No grants of Stock Options and other Awards may be made hereunder after the tenth anniversary of the Effective Date and no grants of Incentive Stock Options may be made hereunder after the tenth anniversary of the date the Plan is approved by the Board.

 

18



 

SECTION 23.  GOVERNING LAW

 

This Plan and all Awards and actions taken thereunder shall be governed by, and construed in accordance with, the laws of the State of Delaware, applied without regard to conflict of law principles.

 

DATE APPROVED BY BOARD OF DIRECTORS:

October 5, 2016

 

 

DATE APPROVED BY STOCKHOLDERS:

 

 

19


 

INCENTIVE STOCK OPTION AGREEMENT
UNDER THE RA PHARMACEUTICALS, INC.
2016 STOCK OPTION AND INCENTIVE PLAN

 

Name of Optionee:

 

 

 

No. of Option Shares:

 

 

 

Option Exercise Price per Share:

$

 

 

Grant Date:

 

 

 

Expiration Date:

 

 

Pursuant to the Ra Pharmaceuticals, Inc. 2016 Stock Option and Incentive Plan as amended through the date hereof (the “Plan”), Ra Pharmaceuticals, Inc. (the “Company”) hereby grants to the Optionee named above an option (the “Stock Option”) to purchase on or prior to the Expiration Date specified above all or part of the number of shares of Common Stock, par value $0.001 per share (the “Stock”), of the Company specified above at the Option Exercise Price per Share specified above subject to the terms and conditions set forth herein and in the Plan.

 

1.                                       Exercisability Schedule .  No portion of this Stock Option may be exercised until such portion shall have become exercisable.  Except as set forth below, and subject to the discretion of the Administrator (as defined in Section 2 of the Plan) to accelerate the exercisability schedule hereunder, this Stock Option shall be exercisable with respect to the following number of Option Shares on the dates indicated so long as the Optionee remains an employee of the Company or a Subsidiary on such dates:

 

Incremental Number of
Option Shares Exercisable*

 

Exercisability Date

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

 


* Max. of $100,000 per yr.

 

Once exercisable, this Stock Option shall continue to be exercisable at any time or times prior to the close of business on the Expiration Date, subject to the provisions hereof and of the Plan.

 



 

2.                                       Manner of Exercise .

 

(a)                                  The Optionee may exercise this Stock Option only in the following manner:  from time to time on or prior to the Expiration Date of this Stock Option, the Optionee may give written notice to the Administrator of his or her election to purchase some or all of the Option Shares purchasable at the time of such notice.  This notice shall specify the number of Option Shares to be purchased.

 

Payment of the purchase price for the Option Shares may be made by one or more of the following methods:  (i) in cash, by certified or bank check or other instrument acceptable to the Administrator; (ii) through the delivery (or attestation to the ownership) of shares of Stock that have been purchased by the Optionee on the open market or that are beneficially owned by the Optionee and are not then subject to any restrictions under any Company plan and that otherwise satisfy any holding periods as may be required by the Administrator; or (iii) by the Optionee delivering to the Company a properly executed exercise notice together with irrevocable instructions to a broker to promptly deliver to the Company cash or a check payable and acceptable to the Company to pay the option purchase price, provided that in the event the Optionee chooses to pay the option purchase price as so provided, the Optionee and the broker shall comply with such procedures and enter into such agreements of indemnity and other agreements as the Administrator shall prescribe as a condition of such payment procedure; or (iv) a combination of (i), (ii) and (iii) above.  Payment instruments will be received subject to collection.

 

The transfer to the Optionee on the records of the Company or of the transfer agent of the Option Shares will be contingent upon (i) the Company’s receipt from the Optionee of the full purchase price for the Option Shares, as set forth above, (ii) the fulfillment of any other requirements contained herein or in the Plan or in any other agreement or provision of laws, and (iii) the receipt by the Company of any agreement, statement or other evidence that the Company may require to satisfy itself that the issuance of Stock to be purchased pursuant to the exercise of Stock Options under the Plan and any subsequent resale of the shares of Stock will be in compliance with applicable laws and regulations.  In the event the Optionee chooses to pay the purchase price by previously-owned shares of Stock through the attestation method, the number of shares of Stock transferred to the Optionee upon the exercise of the Stock Option shall be net of the shares attested to.

 

(b)                                  The shares of Stock purchased upon exercise of this Stock Option shall be transferred to the Optionee on the records of the Company or of the transfer agent upon compliance to the satisfaction of the Administrator with all requirements under applicable laws or regulations in connection with such transfer and with the requirements hereof and of the Plan.  The determination of the Administrator as to such compliance shall be final and binding on the Optionee.  The Optionee shall not be deemed to be the holder of, or to have any of the rights of a holder with respect to, any shares of Stock subject to this Stock Option unless and until this Stock Option shall have been exercised pursuant to the terms hereof, the Company or the transfer agent shall have transferred the shares to the Optionee, and the Optionee’s name shall have been entered as the stockholder of record on the books of the Company.  Thereupon, the Optionee shall have full voting, dividend and other ownership rights with respect to such shares of Stock.

 

2



 

(c)                                   The minimum number of shares with respect to which this Stock Option may be exercised at any one time shall be [100] shares, unless the number of shares with respect to which this Stock Option is being exercised is the total number of shares subject to exercise under this Stock Option at the time.

 

(d)                                  Notwithstanding any other provision hereof or of the Plan, no portion of this Stock Option shall be exercisable after the Expiration Date hereof.

 

3.                                       Termination of Employment .  If the Optionee’s employment by the Company or a Subsidiary (as defined in the Plan) is terminated, the period within which to exercise the Stock Option may be subject to earlier termination as set forth below.

 

(a)                                  Termination Due to Death .  If the Optionee’s employment terminates by reason of the Optionee’s death, any portion of this Stock Option outstanding on such date, to the extent exercisable on the date of death, may thereafter be exercised by the Optionee’s legal representative or legatee for a period of 12 months from the date of death or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date of death shall terminate immediately and be of no further force or effect.

 

(b)                                  Termination Due to Disability .  If the Optionee’s employment terminates by reason of the Optionee’s disability (as determined by the Administrator), any portion of this Stock Option outstanding on such date, to the extent exercisable on the date of such termination of employment, may thereafter be exercised by the Optionee for a period of 12 months from the date of disability or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date of disability shall terminate immediately and be of no further force or effect.

 

(c)                                   Termination for Cause .  If the Optionee’s employment terminates for Cause, any portion of this Stock Option outstanding on such date shall terminate immediately and be of no further force and effect.  For purposes hereof, “Cause” shall mean, unless otherwise provided in an employment agreement between the Company and the Optionee, a determination by the Administrator that the Optionee shall be dismissed as a result of (i) any material breach by the Optionee of any agreement between the Optionee and the Company; (ii) the conviction of, indictment for or plea of nolo contendere by the Optionee to a felony or a crime involving moral turpitude; or (iii) any material misconduct or willful and deliberate non-performance (other than by reason of disability) by the Optionee of the Optionee’s duties to the Company.

 

(d)                                  Other Termination .  If the Optionee’s employment terminates for any reason other than the Optionee’s death, the Optionee’s disability, or Cause, and unless otherwise determined by the Administrator, any portion of this Stock Option outstanding on such date may be exercised, to the extent exercisable on the date of termination, for a period of three months from the date of termination or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date of termination shall terminate immediately and be of no further force or effect.

 

3



 

The Administrator’s determination of the reason for termination of the Optionee’s employment shall be conclusive and binding on the Optionee and his or her representatives or legatees.

 

4.                                       Incorporation of Plan .  Notwithstanding anything herein to the contrary, this Stock Option shall be subject to and governed by all the terms and conditions of the Plan, including the powers of the Administrator set forth in Section 2(b) of the Plan.  Capitalized terms in this Agreement shall have the meaning specified in the Plan, unless a different meaning is specified herein.

 

5.                                       Transferability .  This Agreement is personal to the Optionee, is non-assignable and is not transferable in any manner, by operation of law or otherwise, other than by will or the laws of descent and distribution.  This Stock Option is exercisable, during the Optionee’s lifetime, only by the Optionee, and thereafter, only by the Optionee’s legal representative or legatee.

 

6.                                       Status of the Stock Option .  This Stock Option is intended to qualify as an “incentive stock option” under Section 422 of the Internal Revenue Code of 1986, as amended (the “Code”), but the Company does not represent or warrant that this Stock Option qualifies as such.  The Optionee should consult with his or her own tax advisors regarding the tax effects of this Stock Option and the requirements necessary to obtain favorable income tax treatment under Section 422 of the Code, including, but not limited to, holding period requirements.  To the extent any portion of this Stock Option does not so qualify as an “incentive stock option,” such portion shall be deemed to be a non-qualified stock option.  If the Optionee intends to dispose or does dispose (whether by sale, gift, transfer or otherwise) of any Option Shares within the one-year period beginning on the date after the transfer of such shares to him or her, or within the two-year period beginning on the day after the grant of this Stock Option, he or she will so notify the Company within 30 days after such disposition.

 

7.                                       Tax Withholding .  The Optionee shall, not later than the date as of which the exercise of this Stock Option becomes a taxable event for Federal income tax purposes, pay to the Company or make arrangements satisfactory to the Administrator for payment of any Federal, state, and local taxes required by law to be withheld on account of such taxable event.  The Company shall have the authority to cause the minimum required tax withholding obligation to be satisfied, in whole or in part, by withholding from shares of Stock to be issued to the Optionee a number of shares of Stock with an aggregate Fair Market Value that would satisfy the minimum withholding amount due.

 

8.                                       No Obligation to Continue Employment .  Neither the Company nor any Subsidiary is obligated by or as a result of the Plan or this Agreement to continue the Optionee in employment and neither the Plan nor this Agreement shall interfere in any way with the right of the Company or any Subsidiary to terminate the employment of the Optionee at any time.

 

9.                                       Integration .  This Agreement constitutes the entire agreement between the parties with respect to this Stock Option and supersedes all prior agreements and discussions between the parties concerning such subject matter.

 

4



 

10.                                Data Privacy Consent .  In order to administer the Plan and this Agreement and to implement or structure future equity grants, the Company, its subsidiaries and affiliates and certain agents thereof (together, the “Relevant Companies”) may process any and all personal or professional data, including but not limited to Social Security or other identification number, home address and telephone number, date of birth and other information that is necessary or desirable for the administration of the Plan and/or this Agreement (the “Relevant Information”).  By entering into this Agreement, the Optionee (i) authorizes the Company to collect, process, register and transfer to the Relevant Companies all Relevant Information; (ii) waives any privacy rights the Optionee may have with respect to the Relevant Information; (iii) authorizes the Relevant Companies to store and transmit such information in electronic form; and (iv) authorizes the transfer of the Relevant Information to any jurisdiction in which the Relevant Companies consider appropriate.  The Optionee shall have access to, and the right to change, the Relevant Information.  Relevant Information will only be used in accordance with applicable law.

 

11.                                Notices .  Notices hereunder shall be mailed or delivered to the Company at its principal place of business and shall be mailed or delivered to the Optionee at the address on file with the Company or, in either case, at such other address as one party may subsequently furnish to the other party in writing.

 

5



 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

 

By:

 

 

 

Title:

 

The foregoing Agreement is hereby accepted and the terms and conditions thereof hereby agreed to by the undersigned.  Electronic acceptance of this Agreement pursuant to the Company’s instructions to the Optionee (including through an online acceptance process) is acceptable.

 

Dated:

 

 

 

 

 

Optionee’s Signature

 

 

 

 

 

 

 

 

Optionee’s name and address:

 

 

 

 

 

 

 

6


 

NON-QUALIFIED STOCK OPTION AGREEMENT
FOR COMPANY EMPLOYEES
UNDER THE
RA PHARMACEUTICALS , INC.
2016 STOCK OPTION AND INCENTIVE PLAN

 

Name of Optionee:

 

 

 

 

 

No. of Option Shares:

 

 

 

 

 

Option Exercise Price per Share:

 

$

 

 

 

Grant Date:

 

 

 

 

 

Expiration Date:

 

 

 

Pursuant to the Ra Pharmaceuticals, Inc. 2016 Stock Option and Incentive Plan as amended through the date hereof (the “Plan”), Ra Pharmaceuticals, Inc. (the “Company”) hereby grants to the Optionee named above an option (the “Stock Option”) to purchase on or prior to the Expiration Date specified above all or part of the number of shares of Common Stock, par value $0.001 per share (the “Stock”), of the Company specified above at the Option Exercise Price per Share specified above subject to the terms and conditions set forth herein and in the Plan.  This Stock Option is not intended to be an “incentive stock option” under Section 422 of the Internal Revenue Code of 1986, as amended.

 

1.                                       Exercisability Schedule .  No portion of this Stock Option may be exercised until such portion shall have become exercisable.  Except as set forth below, and subject to the discretion of the Administrator (as defined in Section 2 of the Plan) to accelerate the exercisability schedule hereunder, this Stock Option shall be exercisable with respect to the following number of Option Shares on the dates indicated so long as Optionee remains an employee of the Company or a Subsidiary on such dates:

 

Incremental Number of
Option Shares Exercisable

 

Exercisability Date

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

 

Once exercisable, this Stock Option shall continue to be exercisable at any time or times prior to the close of business on the Expiration Date, subject to the provisions hereof and of the Plan.

 



 

2.                                       Manner of Exercise .

 

(a)                                  The Optionee may exercise this Stock Option only in the following manner:  from time to time on or prior to the Expiration Date of this Stock Option, the Optionee may give written notice to the Administrator of his or her election to purchase some or all of the Option Shares purchasable at the time of such notice.  This notice shall specify the number of Option Shares to be purchased.

 

Payment of the purchase price for the Option Shares may be made by one or more of the following methods:  (i) in cash, by certified or bank check or other instrument acceptable to the Administrator; (ii) through the delivery (or attestation to the ownership) of shares of Stock that have been purchased by the Optionee on the open market or that are beneficially owned by the Optionee and are not then subject to any restrictions under any Company plan and that otherwise satisfy any holding periods as may be required by the Administrator; (iii) by the Optionee delivering to the Company a properly executed exercise notice together with irrevocable instructions to a broker to promptly deliver to the Company cash or a check payable and acceptable to the Company to pay the option purchase price, provided that in the event the Optionee chooses to pay the option purchase price as so provided, the Optionee and the broker shall comply with such procedures and enter into such agreements of indemnity and other agreements as the Administrator shall prescribe as a condition of such payment procedure; (iv) by a “net exercise” arrangement pursuant to which the Company will reduce the number of shares of Stock issuable upon exercise by the largest whole number of shares with a Fair Market Value that does not exceed the aggregate exercise price; or (v) a combination of (i), (ii), (iii) and (iv) above.  Payment instruments will be received subject to collection.

 

The transfer to the Optionee on the records of the Company or of the transfer agent of the Option Shares will be contingent upon (i) the Company’s receipt from the Optionee of the full purchase price for the Option Shares, as set forth above, (ii) the fulfillment of any other requirements contained herein or in the Plan or in any other agreement or provision of laws, and (iii) the receipt by the Company of any agreement, statement or other evidence that the Company may require to satisfy itself that the issuance of Stock to be purchased pursuant to the exercise of Stock Options under the Plan and any subsequent resale of the shares of Stock will be in compliance with applicable laws and regulations.  In the event the Optionee chooses to pay the purchase price by previously-owned shares of Stock through the attestation method, the number of shares of Stock transferred to the Optionee upon the exercise of the Stock Option shall be net of the shares attested to.

 

(b)                                  The shares of Stock purchased upon exercise of this Stock Option shall be transferred to the Optionee on the records of the Company or of the transfer agent upon compliance to the satisfaction of the Administrator with all requirements under applicable laws or regulations in connection with such transfer and with the requirements hereof and of the Plan.  The determination of the Administrator as to such compliance shall be final and binding on the Optionee.  The Optionee shall not be deemed to be the holder of, or to have any of the rights of a holder with respect to, any shares of Stock subject to this Stock Option unless and until this Stock Option shall have been exercised pursuant to the terms hereof, the Company or the transfer agent shall have transferred the shares to the Optionee, and the Optionee’s name shall have been

 

2



 

entered as the stockholder of record on the books of the Company.  Thereupon, the Optionee shall have full voting, dividend and other ownership rights with respect to such shares of Stock.

 

(c)                                   The minimum number of shares with respect to which this Stock Option may be exercised at any one time shall be [100] shares, unless the number of shares with respect to which this Stock Option is being exercised is the total number of shares subject to exercise under this Stock Option at the time.

 

(d)                                  Notwithstanding any other provision hereof or of the Plan, no portion of this Stock Option shall be exercisable after the Expiration Date hereof.

 

3.                                       Termination of Employment .  If the Optionee’s employment by the Company or a Subsidiary (as defined in the Plan) is terminated, the period within which to exercise the Stock Option may be subject to earlier termination as set forth below.

 

(a)                                  Termination Due to Death .  If the Optionee’s employment terminates by reason of the Optionee’s death, any portion of this Stock Option outstanding on such date, to the extent exercisable on the date of death, may thereafter be exercised by the Optionee’s legal representative or legatee for a period of 12 months from the date of death or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date of death shall terminate immediately and be of no further force or effect.

 

(b)                                  Termination Due to Disability .  If the Optionee’s employment terminates by reason of the Optionee’s disability (as determined by the Administrator), any portion of this Stock Option outstanding on such date, to the extent exercisable on the date of such termination of employment, may thereafter be exercised by the Optionee for a period of 12 months from the date of disability or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date of disability shall terminate immediately and be of no further force or effect.

 

(c)                                   Termination for Cause .  If the Optionee’s employment terminates for Cause, any portion of this Stock Option outstanding on such date shall terminate immediately and be of no further force and effect.  For purposes hereof, “Cause” shall mean, unless otherwise provided in an employment agreement between the Company and the Optionee, a determination by the Administrator that the Optionee shall be dismissed as a result of (i) any material breach by the Optionee of any agreement between the Optionee and the Company; (ii) the conviction of, indictment for or plea of nolo contendere by the Optionee to a felony or a crime involving moral turpitude; or (iii) any material misconduct or willful and deliberate non-performance (other than by reason of disability) by the Optionee of the Optionee’s duties to the Company.

 

(d)                                  Other Termination .  If the Optionee’s employment terminates for any reason other than the Optionee’s death, the Optionee’s disability or Cause, and unless otherwise determined by the Administrator, any portion of this Stock Option outstanding on such date may be exercised, to the extent exercisable on the date of termination, for a period of three months from the date of termination or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date of termination shall terminate immediately and be of no further force or effect.

 

3



 

The Administrator’s determination of the reason for termination of the Optionee’s employment shall be conclusive and binding on the Optionee and his or her representatives or legatees.

 

4.                                       Incorporation of Plan .  Notwithstanding anything herein to the contrary, this Stock Option shall be subject to and governed by all the terms and conditions of the Plan, including the powers of the Administrator set forth in  Section 2(b) of the Plan.  Capitalized terms in this Agreement shall have the meaning specified in the Plan, unless a different meaning is specified herein.

 

5.                                       Transferability .  This Agreement is personal to the Optionee, is non-assignable and is not transferable in any manner, by operation of law or otherwise, other than by will or the laws of descent and distribution.  This Stock Option is exercisable, during the Optionee’s lifetime, only by the Optionee, and thereafter, only by the Optionee’s legal representative or legatee.

 

6.                                       Tax Withholding .  The Optionee shall, not later than the date as of which the exercise of this Stock Option becomes a taxable event for Federal income tax purposes, pay to the Company or make arrangements satisfactory to the Administrator for payment of any Federal, state, and local taxes required by law to be withheld on account of such taxable event.  The Company shall have the authority to cause the minimum required tax withholding obligation to be satisfied, in whole or in part, by withholding from shares of Stock to be issued to the Optionee a number of shares of Stock with an aggregate Fair Market Value that would satisfy the minimum withholding amount due.

 

7.                                       No Obligation to Continue Employment .  Neither the Company nor any Subsidiary is obligated by or as a result of the Plan or this Agreement to continue the Optionee in employment and neither the Plan nor this Agreement shall interfere in any way with the right of the Company or any Subsidiary to terminate the employment of the Optionee at any time.

 

8.                                       Integration .  This Agreement constitutes the entire agreement between the parties with respect to this Stock Option and supersedes all prior agreements and discussions between the parties concerning such subject matter.

 

9.                                       Data Privacy Consent .  In order to administer the Plan and this Agreement and to implement or structure future equity grants, the Company, its subsidiaries and affiliates and certain agents thereof (together, the “Relevant Companies”) may process any and all personal or professional data, including but not limited to Social Security or other identification number, home address and telephone number, date of birth and other information that is necessary or desirable for the administration of the Plan and/or this Agreement (the “Relevant Information”).  By entering into this Agreement, the Optionee (i) authorizes the Company to collect, process, register and transfer to the Relevant Companies all Relevant Information; (ii) waives any privacy rights the Optionee may have with respect to the Relevant Information; (iii) authorizes the Relevant Companies to store and transmit such information in electronic form; and (iv) authorizes the transfer of the Relevant Information to any jurisdiction in which the Relevant Companies consider appropriate.  The Optionee shall have access to, and the right to change, the

 

4



 

Relevant Information.  Relevant Information will only be used in accordance with applicable law.

 

10.                                Notices .  Notices hereunder shall be mailed or delivered to the Company at its principal place of business and shall be mailed or delivered to the Optionee at the address on file with the Company or, in either case, at such other address as one party may subsequently furnish to the other party in writing.

 

5



 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

By:

 

 

 

Title:

 

The foregoing Agreement is hereby accepted and the terms and conditions thereof hereby agreed to by the undersigned.  Electronic acceptance of this Agreement pursuant to the Company’s instructions to the Optionee (including through an online acceptance process) is acceptable.

 

Dated:

 

 

 

 

 

 

Optionee’s Signature

 

 

 

 

 

 

 

 

 

 

 

Optionee’s name and address:

 

 

6



 

 

NON-QUALIFIED STOCK OPTION AGREEMENT
FOR NON-EMPLOYEE DIRECTORS
UNDER THE
RA PHARMACEUTICALS , INC.
2016 STOCK OPTION AND INCENTIVE PLAN

 

 

Name of Optionee:

 

 

 

No. of Option Shares:

 

 

 

Option Exercise Price per Share:

$

 

 

Grant Date:

 

 

 

Expiration Date:

 

 

Pursuant to the Ra Pharmaceuticals, Inc. 2016 Stock Option and Incentive Plan as amended through the date hereof (the “Plan”), Ra Pharmaceuticals, Inc. (the “Company”) hereby grants to the Optionee named above, who is a member of the Board (a “Director”) but is not an employee of the Company, an option (the “Stock Option”) to purchase on or prior to the Expiration Date specified above all or part of the number of shares of Common Stock, par value $0.001 per share (the “Stock”), of the Company specified above at the Option Exercise Price per Share specified above subject to the terms and conditions set forth herein and in the Plan.  This Stock Option is not intended to be an “incentive stock option” under Section 422 of the Internal Revenue Code of 1986, as amended.

 

1.                                       Exercisability Schedule .  No portion of this Stock Option may be exercised until such portion shall have become exercisable.  Except as set forth below, and subject to the discretion of the Administrator (as defined in Section 2 of the Plan) to accelerate the exercisability schedule hereunder, this Stock Option shall be exercisable with respect to the following number of Option Shares on the dates indicated so long as the Optionee remains in service as a member of the Board on such dates:

 

Incremental Number of
Option Shares Exercisable

 

Exercisability Date

 

 

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

 



 

Once exercisable, this Stock Option shall continue to be exercisable at any time or times prior to the close of business on the Expiration Date, subject to the provisions hereof and of the Plan.

 

2.                                       Manner of Exercise .

 

(a)                                  The Optionee may exercise this Stock Option only in the following manner:  from time to time on or prior to the Expiration Date of this Stock Option, the Optionee may give written notice to the Administrator of his or her election to purchase some or all of the Option Shares purchasable at the time of such notice.  This notice shall specify the number of Option Shares to be purchased.

 

Payment of the purchase price for the Option Shares may be made by one or more of the following methods:  (i) in cash, by certified or bank check or other instrument acceptable to the Administrator; (ii) through the delivery (or attestation to the ownership) of shares of Stock that have been purchased by the Optionee on the open market or that are beneficially owned by the Optionee and are not then subject to any restrictions under any Company plan and that otherwise satisfy any holding periods as may be required by the Administrator; (iii) by the Optionee delivering to the Company a properly executed exercise notice together with irrevocable instructions to a broker to promptly deliver to the Company cash or a check payable and acceptable to the Company to pay the option purchase price, provided that in the event the Optionee chooses to pay the option purchase price as so provided, the Optionee and the broker shall comply with such procedures and enter into such agreements of indemnity and other agreements as the Administrator shall prescribe as a condition of such payment procedure; (iv) by a “net exercise” arrangement pursuant to which the Company will reduce the number of shares of Stock issuable upon exercise by the largest whole number of shares with a Fair Market Value that does not exceed the aggregate exercise price; or (v) a combination of (i), (ii), (iii) and (iv) above.  Payment instruments will be received subject to collection.

 

The transfer to the Optionee on the records of the Company or of the transfer agent of the Option Shares will be contingent upon (i) the Company’s receipt from the Optionee of the full purchase price for the Option Shares, as set forth above, (ii) the fulfillment of any other requirements contained herein or in the Plan or in any other agreement or provision of laws, and (iii) the receipt by the Company of any agreement, statement or other evidence that the Company may require to satisfy itself that the issuance of Stock to be purchased pursuant to the exercise of Stock Options under the Plan and any subsequent resale of the shares of Stock will be in compliance with applicable laws and regulations.  In the event the Optionee chooses to pay the purchase price by previously-owned shares of Stock through the attestation method, the number of shares of Stock transferred to the Optionee upon the exercise of the Stock Option shall be net of the shares attested to.

 

(b)                                  The shares of Stock purchased upon exercise of this Stock Option shall be transferred to the Optionee on the records of the Company or of the transfer agent upon compliance to the satisfaction of the Administrator with all requirements under applicable laws or regulations in connection with such transfer and with the requirements hereof and of the Plan.  The determination of the Administrator as to such compliance shall be final and binding on the Optionee.  The Optionee shall not be deemed to be the holder of, or to have any of the rights of a

 

2



 

holder with respect to, any shares of Stock subject to this Stock Option unless and until this Stock Option shall have been exercised pursuant to the terms hereof, the Company or the transfer agent shall have transferred the shares to the Optionee, and the Optionee’s name shall have been entered as the stockholder of record on the books of the Company.  Thereupon, the Optionee shall have full voting, dividend and other ownership rights with respect to such shares of Stock.

 

(c)                                   The minimum number of shares with respect to which this Stock Option may be exercised at any one time shall be 100 shares, unless the number of shares with respect to which this Stock Option is being exercised is the total number of shares subject to exercise under this Stock Option at the time.

 

(d)                                  Notwithstanding any other provision hereof or of the Plan, no portion of this Stock Option shall be exercisable after the Expiration Date hereof.

 

3.                                       Termination as Director . If the Optionee ceases to be a Director of the Company, the period within which to exercise the Stock Option may be subject to earlier termination as set forth below.

 

(a)                                  Termination Due to Death .  If the Optionee’s service as a Director terminates by reason of the Optionee’s death, any portion of this Stock Option outstanding on such date, to the extent exercisable on the date of death, may thereafter be exercised by the Optionee’s legal representative or legatee for a period of 12 months from the date of death or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date of death shall terminate immediately and be of no further force or effect.

 

(b)                                  Other Termination .  If the Optionee ceases to be a Director for any reason other than the Optionee’s death, any portion of this Stock Option outstanding on such date may be exercised, to the extent exercisable on the date the Optionee ceased to be a Director, for a period of six months from the date the Optionee ceased to be a Director or until the Expiration Date, if earlier.  Any portion of this Stock Option that is not exercisable on the date the Optionee ceases to be a Director shall terminate immediately and be of no further force or effect.

 

4.                                       Incorporation of Plan .  Notwithstanding anything herein to the contrary, this Stock Option shall be subject to and governed by all the terms and conditions of the Plan, including the powers of the Administrator set forth in Section 2(b) of the Plan.  Capitalized terms in this Agreement shall have the meaning specified in the Plan, unless a different meaning is specified herein.

 

5.                                       Transferability .  This Agreement is personal to the Optionee, is non-assignable and is not transferable in any manner, by operation of law or otherwise, other than by will or the laws of descent and distribution.  This Stock Option is exercisable, during the Optionee’s lifetime, only by the Optionee, and thereafter, only by the Optionee’s legal representative or legatee.

 

6.                                       No Obligation to Continue as a Director .  Neither the Plan nor this Stock Option confers upon the Optionee any rights with respect to continuance as a Director.

 

3



 

7.                                       Integration .  This Agreement constitutes the entire agreement between the parties with respect to this Stock Option and supersedes all prior agreements and discussions between the parties concerning such subject matter.

 

8.                                       Data Privacy Consent .  In order to administer the Plan and this Agreement and to implement or structure future equity grants, the Company, its subsidiaries and affiliates and certain agents thereof (together, the “Relevant Companies”) may process any and all personal or professional data, including but not limited to Social Security or other identification number, home address and telephone number, date of birth and other information that is necessary or desirable for the administration of the Plan and/or this Agreement (the “Relevant Information”).  By entering into this Agreement, the Optionee (i) authorizes the Company to collect, process, register and transfer to the Relevant Companies all Relevant Information; (ii) waives any privacy rights the Optionee may have with respect to the Relevant Information; (iii) authorizes the Relevant Companies to store and transmit such information in electronic form; and (iv) authorizes the transfer of the Relevant Information to any jurisdiction in which the Relevant Companies consider appropriate.  The Optionee shall have access to, and the right to change, the Relevant Information.  Relevant Information will only be used in accordance with applicable law.

 

9.                                       Notices .  Notices hereunder shall be mailed or delivered to the Company at its principal place of business and shall be mailed or delivered to the Optionee at the address on file with the Company or, in either case, at such other address as one party may subsequently furnish to the other party in writing.

 

4



 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

By:

 

 

 

Title:

 

The foregoing Agreement is hereby accepted and the terms and conditions thereof hereby agreed to by the undersigned.  Electronic acceptance of this Agreement pursuant to the Company’s instructions to the Optionee (including through an online acceptance process) is acceptable.

 

Dated:

 

 

 

 

 

 

Optionee’s Signature

 

 

 

 

 

 

 

 

 

 

 

Optionee’s name and address:

 

 

 

5


 

RESTRICTED STOCK AWARD AGREEMENT
UNDER THE
RA PHARMACEUTICALS , INC.
2016 STOCK OPTION AND INCENTIVE PLAN

 

Name of Grantee:

 

 

 

No. of Shares:

 

 

 

Grant Date:

 

 

Pursuant to the Ra Pharmaceuticals, Inc. 2016 Stock Option and Incentive Plan (the “Plan”) as amended through the date hereof, Ra Pharmaceuticals, Inc. (the “Company”) hereby grants a Restricted Stock Award (an “Award”) to the Grantee named above.  Upon acceptance of this Award, the Grantee shall receive the number of shares of Common Stock, par value $0.001 per share (the “Stock”), of the Company specified above, subject to the restrictions and conditions set forth herein and in the Plan.  The Company acknowledges the receipt from the Grantee of consideration with respect to the par value of the Stock in the form of cash, past or future services rendered to the Company by the Grantee or such other form of consideration as is acceptable to the Administrator.

 

1.                                       Award .  The shares of Restricted Stock awarded hereunder shall be issued and held by the Company’s transfer agent in book entry form, and the Grantee’s name shall be entered as the stockholder of record on the books of the Company.  Thereupon, the Grantee shall have all the rights of a stockholder with respect to such shares, including voting and dividend rights, subject, however, to the restrictions and conditions specified in Paragraph 2 below.  The Grantee shall (i) sign and deliver to the Company a copy of this Award Agreement and (ii) deliver to the Company a stock power endorsed in blank.

 

2.                                       Restrictions and Conditions .

 

(a)                                  Any book entries for the shares of Restricted Stock granted herein shall bear an appropriate legend, as determined by the Administrator in its sole discretion, to the effect that such shares are subject to restrictions as set forth herein and in the Plan.

 

(b)                                  Shares of Restricted Stock granted herein may not be sold, assigned, transferred, pledged or otherwise encumbered or disposed of by the Grantee prior to vesting.

 

(c)                                   If the Grantee’s employment with the Company and its Subsidiaries is voluntarily or involuntarily terminated for any reason (including death) prior to vesting of shares of Restricted Stock granted herein, all shares of Restricted Stock shall immediately and automatically be forfeited and returned to the Company.

 

3.                                       Vesting of Restricted Stock .  The restrictions and conditions in Paragraph 2 of this Agreement shall lapse on the Vesting Date or Dates specified in the following schedule so long as the Grantee remains an employee of the Company or a Subsidiary on such Dates.  If a series

 



 

of Vesting Dates is specified, then the restrictions and conditions in Paragraph 2 shall lapse only with respect to the number of shares of Restricted Stock specified as vested on such date.

 

Incremental Number
of Shares Vested

 

Vesting Date

 

 

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

 

Subsequent to such Vesting Date or Dates, the shares of Stock on which all restrictions and conditions have lapsed shall no longer be deemed Restricted Stock.  The Administrator may at any time accelerate the vesting schedule specified in this Paragraph 3.

 

4.                                       Dividends .  Dividends on shares of Restricted Stock shall be paid currently to the Grantee.

 

5.                                       Incorporation of Plan .  Notwithstanding anything herein to the contrary, this Award shall be subject to and governed by all the terms and conditions of the Plan, including the powers of the Administrator set forth in Section 2(b) of the Plan.  Capitalized terms in this Agreement shall have the meaning specified in the Plan, unless a different meaning is specified herein.

 

6.                                       Transferability .  This Agreement is personal to the Grantee, is non-assignable and is not transferable in any manner, by operation of law or otherwise, other than by will or the laws of descent and distribution.

 

7.                                       Tax Withholding .  The Grantee shall, not later than the date as of which the receipt of this Award becomes a taxable event for Federal income tax purposes, pay to the Company or make arrangements satisfactory to the Administrator for payment of any Federal, state, and local taxes required by law to be withheld on account of such taxable event.  Except in the case where an election is made pursuant to Paragraph 8 below, the Company shall have the authority to cause the required minimum tax withholding obligation to be satisfied, in whole or in part, by withholding from shares of Stock to be issued or released by the transfer agent a number of shares of Stock with an aggregate Fair Market Value that would satisfy the minimum withholding amount due.

 

8.                                       Election Under Section 83(b) .  The Grantee and the Company hereby agree that the Grantee may, within 30 days following the Grant Date of this Award, file with the Internal Revenue Service and the Company an election under Section 83(b) of the Internal Revenue Code.  In the event the Grantee makes such an election, he or she agrees to provide a copy of the election to the Company.  The Grantee acknowledges that he or she is responsible for obtaining the advice of his or her tax advisors with regard to the Section 83(b) election and that he or she is relying solely on such advisors and not on any statements or representations of the Company or any of its agents with regard to such election.

 

2



 

9.                                       No Obligation to Continue Employment .  Neither the Company nor any Subsidiary is obligated by or as a result of the Plan or this Agreement to continue the Grantee in employment and neither the Plan nor this Agreement shall interfere in any way with the right of the Company or any Subsidiary to terminate the employment of the Grantee at any time.

 

10.                                Integration .  This Agreement constitutes the entire agreement between the parties with respect to this Award and supersedes all prior agreements and discussions between the parties concerning such subject matter.

 

11.                                Data Privacy Consent .  In order to administer the Plan and this Agreement and to implement or structure future equity grants, the Company, its subsidiaries and affiliates and certain agents thereof (together, the “Relevant Companies”) may process any and all personal or professional data, including but not limited to Social Security or other identification number, home address and telephone number, date of birth and other information that is necessary or desirable for the administration of the Plan and/or this Agreement (the “Relevant Information”).  By entering into this Agreement, the Grantee (i) authorizes the Company to collect, process, register and transfer to the Relevant Companies all Relevant Information; (ii) waives any privacy rights the Grantee may have with respect to the Relevant Information; (iii) authorizes the Relevant Companies to store and transmit such information in electronic form; and (iv) authorizes the transfer of the Relevant Information to any jurisdiction in which the Relevant Companies consider appropriate.  The Grantee shall have access to, and the right to change, the Relevant Information.  Relevant Information will only be used in accordance with applicable law.

 

12.                                Notices .  Notices hereunder shall be mailed or delivered to the Company at its principal place of business and shall be mailed or delivered to the Grantee at the address on file with the Company or, in either case, at such other address as one party may subsequently furnish to the other party in writing.

 

3



 

 

RA PHARMACEUTICALS, INC.

 

 

 

By:

 

 

 

Title:

 

The foregoing Agreement is hereby accepted and the terms and conditions thereof hereby agreed to by the undersigned.  Electronic acceptance of this Agreement pursuant to the Company’s instructions to the Grantee (including through an online acceptance process) is acceptable.

 

Dated:

 

 

 

 

 

 

Grantee’s Signature

 

 

 

 

 

 

 

 

 

 

 

Grantee’s name and address:

 

 

 

4


 

RESTRICTED STOCK UNIT AWARD AGREEMENT
FOR COMPANY EMPLOYEES
UNDER THE
RA PHARMACEUTICALS , INC.
2016 STOCK OPTION AND INCENTIVE PLAN

 

Name of Grantee:

 

No. of Restricted Stock Units:

 

Grant Date:

 

Pursuant to the Ra Pharmaceuticals, Inc. 2016 Stock Option and Incentive Plan as amended through the date hereof (the “Plan”), Ra Pharmaceuticals, Inc. (the “Company”) hereby grants an award of the number of Restricted Stock Units listed above (an “Award”) to the Grantee named above.  Each Restricted Stock Unit shall relate to one share of Common Stock, par value $0.001 per share (the “Stock”), of the Company.

 

1.                                       Restrictions on Transfer of Award .  This Award may not be sold, transferred, pledged, assigned or otherwise encumbered or disposed of by the Grantee, and any shares of Stock issuable with respect to the Award may not be sold, transferred, pledged, assigned or otherwise encumbered or disposed of until (i) the Restricted Stock Units have vested as provided in Paragraph 2 of this Agreement and (ii) shares of Stock have been issued to the Grantee in accordance with the terms of the Plan and this Agreement.

 

2.                                       Vesting of Restricted Stock Units .  The restrictions and conditions of Paragraph 1 of this Agreement shall lapse on the Vesting Date or Dates specified in the following schedule so long as the Grantee remains an employee of the Company or a Subsidiary on such Dates.  If a series of Vesting Dates is specified, then the restrictions and conditions in Paragraph 1 shall lapse only with respect to the number of Restricted Stock Units specified as vested on such date.

 

Incremental Number of
Restricted Stock Units Vested

 

Vesting Date

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

 

The Administrator may at any time accelerate the vesting schedule specified in this Paragraph 2.

 

3.                                       Termination of Employment .  If the Grantee’s employment with the Company and its Subsidiaries terminates for any reason (including death or disability) prior to the satisfaction of the vesting conditions set forth in Paragraph 2 above, any Restricted Stock Units that have not vested as of such date shall automatically and without notice terminate and be forfeited, and neither the Grantee nor any of his or her successors, heirs, assigns, or personal

 



 

representatives will thereafter have any further rights or interests in such unvested Restricted Stock Units.

 

4.                                       Issuance of Shares of Stock .  As soon as practicable following each Vesting Date (but in no event later than two and one-half months after the end of the year in which the Vesting Date occurs), the Company shall issue to the Grantee the number of shares of Stock equal to the aggregate number of Restricted Stock Units that have vested pursuant to Paragraph 2 of this Agreement on such date and the Grantee shall thereafter have all the rights of a stockholder of the Company with respect to such shares.

 

5.                                       Incorporation of Plan .  Notwithstanding anything herein to the contrary, this Agreement shall be subject to and governed by all the terms and conditions of the Plan, including the powers of the Administrator set forth in Section 2(b) of the Plan.  Capitalized terms in this Agreement shall have the meaning specified in the Plan, unless a different meaning is specified herein.

 

6.                                       Tax Withholding .   The Grantee shall, not later than the date as of which the receipt of this Award becomes a taxable event for Federal income tax purposes, pay to the Company or make arrangements satisfactory to the Administrator for payment of any Federal, state, and local taxes required by law to be withheld on account of such taxable event.  The Company shall have the authority to cause the required minimum tax withholding obligation to be satisfied, in whole or in part, by withholding from shares of Stock to be issued to the Grantee a number of shares of Stock with an aggregate Fair Market Value that would satisfy the withholding amount due.

 

7.                                       Section 409A of the Code.   This Agreement shall be interpreted in such a manner that all provisions relating to the settlement of the Award are exempt from the requirements of Section 409A of the Code as “short-term deferrals” as described in Section 409A of the Code.

 

8.                                       No Obligation to Continue Employment .  Neither the Company nor any Subsidiary is obligated by or as a result of the Plan or this Agreement to continue the Grantee in employment and neither the Plan nor this Agreement shall interfere in any way with the right of the Company or any Subsidiary to terminate the employment of the Grantee at any time.

 

9.                                       Integration .  This Agreement constitutes the entire agreement between the parties with respect to this Award and supersedes all prior agreements and discussions between the parties concerning such subject matter.

 

10.                                Data Privacy Consent .  In order to administer the Plan and this Agreement and to implement or structure future equity grants, the Company, its subsidiaries and affiliates and certain agents thereof (together, the “Relevant Companies”) may process any and all personal or professional data, including but not limited to Social Security or other identification number, home address and telephone number, date of birth and other information that is necessary or desirable for the administration of the Plan and/or this Agreement (the “Relevant Information”).  By entering into this Agreement, the Grantee (i) authorizes the Company to collect, process, register and transfer to the Relevant Companies all Relevant Information; (ii) waives any privacy rights the Grantee may have with respect to the Relevant Information; (iii) authorizes the Relevant Companies to store and transmit such information in electronic form; and (iv)

 

2



 

authorizes the transfer of the Relevant Information to any jurisdiction in which the Relevant Companies consider appropriate.  The Grantee shall have access to, and the right to change, the Relevant Information.  Relevant Information will only be used in accordance with applicable law.

 

11.                                Notices .  Notices hereunder shall be mailed or delivered to the Company at its principal place of business and shall be mailed or delivered to the Grantee at the address on file with the Company or, in either case, at such other address as one party may subsequently furnish to the other party in writing.

 

3



 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

By:

 

 

 

Title:

 

The foregoing Agreement is hereby accepted and the terms and conditions thereof hereby agreed to by the undersigned.  Electronic acceptance of this Agreement pursuant to the Company’s instructions to the Grantee (including through an online acceptance process) is acceptable.

 

Dated:

 

 

 

 

Grantee’s Signature

 

 

 

 

 

Grantee’s name and address:

 

 

 

 

 

4


 

RESTRICTED STOCK UNIT AWARD AGREEMENT
FOR NON-EMPLOYEE DIRECTORS
UNDER THE
RA PHARMACEUTICALS , INC.
2016 STOCK OPTION AND INCENTIVE PLAN

 

Name of Grantee:

 

No. of Restricted Stock Units:

 

Grant Date:

 

Pursuant to the Ra Pharmaceuticals, Inc. 2016 Stock Option and Incentive Plan as amended through the date hereof (the “Plan”), Ra Pharmaceuticals, Inc. (the “Company”) hereby grants an award of the number of Restricted Stock Units listed above (an “Award”) to the Grantee named above.  Each Restricted Stock Unit shall relate to one share of Common Stock, par value $0.001 per share (the “Stock”), of the Company.

 

1.                                       Restrictions on Transfer of Award .  This Award may not be sold, transferred, pledged, assigned or otherwise encumbered or disposed of by the Grantee, and any shares of Stock issuable with respect to the Award may not be sold, transferred, pledged, assigned or otherwise encumbered or disposed of until (i) the Restricted Stock Units have vested as provided in Paragraph 2 of this Agreement and (ii) shares of Stock have been issued to the Grantee in accordance with the terms of the Plan and this Agreement.

 

2.                                       Vesting of Restricted Stock Units .  The restrictions and conditions of Paragraph 1 of this Agreement shall lapse on the Vesting Date or Dates specified in the following schedule so long as the Grantee remains in service as a member of the Board on such Dates.  If a series of Vesting Dates is specified, then the restrictions and conditions in Paragraph 1 shall lapse only with respect to the number of Restricted Stock Units specified as vested on such date.

 

Incremental Number of
Restricted Stock Units Vested

 

Vesting Date

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

              (   %)

 

 

 

 

The Administrator may at any time accelerate the vesting schedule specified in this Paragraph 2.

 

3.                                       Termination of Service .  If the Grantee’s service as a member of the Board terminates for any reason (including death or disability) prior to the satisfaction of the vesting conditions set forth in Paragraph 2 above, any Restricted Stock Units that have not vested as of such date shall automatically and without notice terminate and be forfeited, and neither the

 



 

Grantee nor any of his or her successors, heirs, assigns, or personal representatives will thereafter have any further rights or interests in such unvested Restricted Stock Units.

 

4.                                       Issuance of Shares of Stock .  As soon as practicable following each Vesting Date (but in no event later than two and one-half months after the end of the year in which the Vesting Date occurs), the Company shall issue to the Grantee the number of shares of Stock equal to the aggregate number of Restricted Stock Units that have vested pursuant to Paragraph 2 of this Agreement on such date and the Grantee shall thereafter have all the rights of a stockholder of the Company with respect to such shares.

 

5.                                       Incorporation of Plan .  Notwithstanding anything herein to the contrary, this Agreement shall be subject to and governed by all the terms and conditions of the Plan, including the powers of the Administrator set forth in Section 2(b) of the Plan.  Capitalized terms in this Agreement shall have the meaning specified in the Plan, unless a different meaning is specified herein.

 

6.                                       Section 409A of the Code.   This Agreement shall be interpreted in such a manner that all provisions relating to the settlement of the Award are exempt from the requirements of Section 409A of the Code as “short-term deferrals” as described in Section 409A of the Code.

 

7.                                       No Obligation to Continue as a Director .  Neither the Plan nor this Award confers upon the Grantee any rights with respect to continuance as a member of the Board.

 

8.                                       Integration .  This Agreement constitutes the entire agreement between the parties with respect to this Award and supersedes all prior agreements and discussions between the parties concerning such subject matter.

 

9.                                       Data Privacy Consent .  In order to administer the Plan and this Agreement and to implement or structure future equity grants, the Company, its subsidiaries and affiliates and certain agents thereof (together, the “Relevant Companies”) may process any and all personal or professional data, including but not limited to Social Security or other identification number, home address and telephone number, date of birth and other information that is necessary or desirable for the administration of the Plan and/or this Agreement (the “Relevant Information”).  By entering into this Agreement, the Grantee (i) authorizes the Company to collect, process, register and transfer to the Relevant Companies all Relevant Information; (ii) waives any privacy rights the Grantee may have with respect to the Relevant Information; (iii) authorizes the Relevant Companies to store and transmit such information in electronic form; and (iv) authorizes the transfer of the Relevant Information to any jurisdiction in which the Relevant Companies consider appropriate.  The Grantee shall have access to, and the right to change, the Relevant Information.  Relevant Information will only be used in accordance with applicable law.

 

2



 

10.                                Notices .  Notices hereunder shall be mailed or delivered to the Company at its principal place of business and shall be mailed or delivered to the Grantee at the address on file with the Company or, in either case, at such other address as one party may subsequently furnish to the other party in writing.

 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

 

By:

 

 

 

Title:

 

The foregoing Agreement is hereby accepted and the terms and conditions thereof hereby agreed to by the undersigned.  Electronic acceptance of this Agreement pursuant to the Company’s instructions to the Grantee (including through an online acceptance process) is acceptable.

 

Dated:

 

 

 

 

Grantee’s Signature

 

 

 

 

 

Grantee’s name and address:

 

 

 

 

 

3




Exhibit 10.3

 

RA PHARMACEUTICALS, INC.
SENIOR EXECUTIVE CASH INCENTIVE BONUS PLAN

 

1.                                       Purpose

 

This Senior Executive Cash Incentive Bonus Plan (the “ Incentive Plan ”) is intended to provide an incentive for superior work and to motivate eligible executives of Ra Pharmaceuticals, Inc. (the “ Company ”) and its subsidiaries toward even higher achievement and business results, to tie their goals and interests to those of the Company and its stockholders and to enable the Company to attract and retain highly qualified executives.  The Incentive Plan is for the benefit of Participants (as defined below).

 

2.                                       Participants

 

From time to time, the Compensation Committee of the Board of Directors of the Company (the “ Compensation Committee ”) may select certain key executives (the “ Participants ”) to be eligible to receive bonuses hereunder.  Participation in this Plan does not change the “at will” nature of a Participant’s employment with the Company.

 

3.                                       Administration

 

The Compensation Committee shall have the sole discretion and authority to administer and interpret the Incentive Plan.

 

4.                                       Bonus Determinations

 

(a)                                  Corporate Performance Goals .  A Participant may receive a bonus payment under the Incentive Plan based upon the attainment of one or more performance objectives that are established by the Compensation Committee and relate to financial and operational metrics with respect to the Company or any of its subsidiaries (the “ Corporate Performance Goals ”), including the following:  cash flow (including, but not limited to, operating cash flow and free cash flow); revenue; corporate revenue; earnings before interest, taxes, depreciation and amortization; net income (loss) (either before or after interest, taxes, depreciation and/or amortization); changes in the market price of the Company’s common stock; economic value-added; development, clinical, regulatory or commercial milestones; acquisitions or strategic transactions; operating income (loss); return on capital, assets, equity, or investment; stockholder returns; return on sales; gross or net profit levels; productivity; expense efficiency; margins; operating efficiency; customer satisfaction; working capital; earnings (loss) per share of the Company’s common stock; bookings, new bookings or renewals; sales or market shares; number of customers, number of new customers or customer references; operating income and/or net annual recurring revenue, any of which may be (A) measured in absolute terms or compared to any incremental increase, (B) measured in terms of growth, (C) compared to another company or companies or to results of a peer group, (D) measured against the market as a whole and/or as compared to applicable market indices and/or (E) measured on a pre-tax or post-tax basis (if applicable).  Further, any Corporate Performance Goals may be used to measure the performance of the Company as a whole or a business unit or other segment of the Company, or one or more

 



 

product lines or specific markets.  The Corporate Performance Goals may differ from Participant to Participant.

 

(b)                                  Calculation of Corporate Performance Goals .  At the beginning of each applicable performance period, the Compensation Committee will determine whether any significant element(s) will be included in or excluded from the calculation of any Corporate Performance Goal with respect to any Participant.  In all other respects, Corporate Performance Goals will be calculated in accordance with the Company’s financial statements, generally accepted accounting principles, or under a methodology established by the Compensation Committee at the beginning of the performance period and which is consistently applied with respect to a Corporate Performance Goal in the relevant performance period.

 

(c)                                   Target; Minimum; Maximum .  Each Corporate Performance Goal shall have a “target” (100 percent attainment of the Corporate Performance Goal) and may also have a “minimum” hurdle and/or a “maximum” amount.

 

(d)                                  Bonus Requirements; Individual Goals .  Except as otherwise set forth in this Section 4(d):  (i) any bonuses paid to Participants under the Incentive Plan shall be based upon objectively determinable bonus formulas that tie such bonuses to one or more performance targets relating to the Corporate Performance Goals, (ii) bonus formulas for Participants shall be adopted in each performance period by the Compensation Committee and communicated to each Participant at the beginning of each performance period and (iii) no bonuses shall be paid to Participants unless and until the Compensation Committee makes a determination with respect to the attainment of the performance targets relating to the Corporate Performance Goals.  Notwithstanding the foregoing, the Compensation Committee may adjust bonuses payable under the Incentive Plan based on achievement of one or more individual performance objectives or pay bonuses (including, without limitation, discretionary bonuses) to Participants under the Incentive Plan based on individual performance goals and/or upon such other terms and conditions as the Compensation Committee may in its discretion determine.

 

(e)                                   Individual Target, Minimum and Maximum Bonuses .  The Compensation Committee shall establish a target bonus opportunity for each Participant for each performance period.  For each Participant, the Compensation Committee shall have the authority to apportion the target award so that a portion of the target award shall be tied to attainment of Corporate Performance Goals and a portion of the target award shall be tied to attainment of individual performance objectives. The Compensation Committee may also establish award payouts below or above a Participant’s target bonus opportunity for attainment of Corporate Performance Goals at Minimum or Maximum amounts defined in Section 4(c) above.

 

(f)                                    Employment Requirement .  Subject to any additional terms contained in a written agreement between the Participant and the Company, the payment of a bonus to a Participant with respect to a performance period shall be conditioned upon the Participant’s employment by the Company on the bonus payment date.  If a Participant was not employed for an entire performance period, the Compensation Committee may pro rate the bonus based on the number of days employed during such period.

 



 

5.                                       Timing of Payment

 

(a)                                  With respect to Corporate Performance Goals established and measured on a basis more frequently than annually (e.g., quarterly or semi-annually), the Corporate Performance Goals will be measured at the end of each performance period after the Company’s financial reports with respect to such period(s) have been published.  If the Corporate Performance Goals and/or individual goals for such period are met, payments will be made as soon as practicable following the end of such period, but not later 74 days after the end of the fiscal year in which such performance period ends.

 

(b)                                  With respect to Corporate Performance Goals established and measured on an annual or multi-year basis, Corporate Performance Goals will be measured as of the end of each such performance period (e.g., the end of each fiscal year) after the Company’s financial reports with respect to such period(s) have been published.  If the Corporate Performance Goals and/or individual goals for any such period are met, bonus payments will be made as soon as practicable, but not later than 74 days after the end of the relevant fiscal year.

 

(c)                                   For the avoidance of doubt, bonuses earned at any time in a fiscal year must be paid no later than 74 days after the last day of such fiscal year.

 

6.                                       Amendment and Termination

 

The Company reserves the right to amend or terminate the Incentive Plan at any time in its sole discretion.

 

* * * * *

 

Adopted October 5, 2016, subject to effectiveness of the Company’s Registration Statement on Form S-1.

 




Exhibit 10.4

 

RA PHARMACEUTICALS, INC.

 

2016 EMPLOYEE STOCK PURCHASE PLAN

 

The purpose of the Ra Pharmaceuticals, Inc. 2016 Employee Stock Purchase Plan (“the Plan”) is to provide eligible employees of Ra Pharmaceuticals, Inc. (the “Company”) and each Designated Subsidiary (as defined in Section 11) with opportunities to purchase shares of the Company’s common stock, par value $0.001 per share (the “Common Stock”).  175,000 shares of Common Stock have been approved and reserved for this purpose, plus on January 1, 2017, and each January 1 thereafter through the tenth anniversary of the Effective Date, the number of shares of Common Stock reserved and available for issuance under the Plan shall be cumulatively increased by the least of (i) 300,000 shares of Common Stock, (ii) one percent (1%) of the number of shares of Common Stock issued and outstanding on the immediately preceding December 31st, or (iii) such number of shares of Common Stock as determined by the Administrator. The Plan is intended to constitute an “employee stock purchase plan” within the meaning of Section 423(b) of the Internal Revenue Code of 1986, as amended (the “Code”), and shall be interpreted in accordance with that intent.

 

1.                                       Administration .  The Plan will be administered by the person or persons (the “Administrator”) appointed by the Company’s Board of Directors (the “Board”) for such purpose.  The Administrator has authority at any time to: (i) adopt, alter and repeal such rules, guidelines and practices for the administration of the Plan and for its own acts and proceedings as it shall deem advisable; (ii) interpret the terms and provisions of the Plan; (iii) make all determinations it deems advisable for the administration of the Plan; (iv) decide all disputes arising in connection with the Plan; and (v) otherwise supervise the administration of the Plan.  All interpretations and decisions of the Administrator shall be binding on all persons, including the Company and the Participants.  No member of the Board or individual exercising administrative authority with respect to the Plan shall be liable for any action or determination made in good faith with respect to the Plan or any option granted hereunder.

 

2.                                       Offerings .  The Company will make one or more offerings to eligible employees to purchase Common Stock under the Plan (“Offerings”).  Unless otherwise determined by the Administrator, an Offering will begin on the first business day occurring on or after each January 1 and July 1 and will end on the last business day occurring on or before the following June 30 and December 31, respectively.  The Administrator may, in its discretion, designate a different period for any Offering, provided that no Offering shall exceed six months in duration or overlap any other Offering.

 

3.                                       Eligibility .  All individuals classified as employees on the payroll records of the Company and each Designated Subsidiary are eligible to participate in any one or more of the Offerings under the Plan, provided that as of the first day of the applicable Offering (the “Offering Date”) they are customarily employed by the Company or a Designated Subsidiary for more than 20 hours a week and have completed at least 30 days of employment.  Notwithstanding any other provision herein, individuals who are not contemporaneously classified as employees of the Company or a Designated Subsidiary for purposes of the

 



 

Company’s or applicable Designated Subsidiary’s payroll system are not considered to be eligible employees of the Company or any Designated Subsidiary and shall not be eligible to participate in the Plan.  In the event any such individuals are reclassified as employees of the Company or a Designated Subsidiary for any purpose, including, without limitation, common law or statutory employees, by any action of any third party, including, without limitation, any government agency, or as a result of any private lawsuit, action or administrative proceeding, such individuals shall, notwithstanding such reclassification, remain ineligible for participation.  Notwithstanding the foregoing, the exclusive means for individuals who are not contemporaneously classified as employees of the Company or a Designated Subsidiary on the Company’s or Designated Subsidiary’s payroll system to become eligible to participate in this Plan is through an amendment to this Plan, duly executed by the Company, which specifically renders such individuals eligible to participate herein.

 

4.                                       Participation .

 

(a)                                  Participants .  An eligible employee who is not a Participant in a current Offering may participate in a subsequent Offering by submitting an enrollment form to his or her appropriate payroll location at least 15 business days before the Offering Date (or by such other deadline as shall be established by the Administrator for the Offering).

 

(b)                                  Enrollment .  The enrollment form will (a) state a whole percentage to be deducted from an eligible employee’s Compensation (as defined in Section 11) per pay period, (b) authorize the purchase of Common Stock in each Offering in accordance with the terms of the Plan and (c) specify the exact name or names in which shares of Common Stock purchased for such individual are to be issued pursuant to Section 10.  An employee who does not enroll in accordance with these procedures will be deemed to have waived the right to participate.  Unless a Participant files a new enrollment form or withdraws from the Plan, such Participant’s deductions and purchases will continue at the same percentage of Compensation for future Offerings, provided he or she remains eligible.

 

(c)                                   Notwithstanding the foregoing, participation in the Plan will neither be permitted nor be denied contrary to the requirements of the Code.

 

5.                                       Employee Contributions .  Each eligible employee may authorize payroll deductions at a minimum of one percent up to a maximum of ten percent of such employee’s Compensation for each pay period.  The Company will maintain book accounts showing the amount of payroll deductions made by each Participant for each Offering.  No interest will accrue or be paid on payroll deductions.

 

6.                                       Deduction Changes .  Except as may be determined by the Administrator in advance of an Offering, a Participant may not increase or decrease his or her payroll deduction during any Offering, but may increase or decrease his or her payroll deduction with respect to the next Offering (subject to the limitations of Section 5) by filing a new enrollment form at least 15 business days before the next Offering Date (or by such other deadline as shall be established by the Administrator for the Offering).  The Administrator may, in advance of any Offering,

 



 

establish rules permitting a Participant to increase, decrease or terminate his or her payroll deduction during an Offering.

 

7.                                       Withdrawal .  A Participant may withdraw from participation in the Plan by delivering a written notice of withdrawal to his or her appropriate payroll location.  The Participant’s withdrawal will be effective as of the next business day.  Following a Participant’s withdrawal, the Company will promptly refund such individual’s entire account balance under the Plan to him or her (after payment for any Common Stock purchased before the effective date of withdrawal).  Partial withdrawals are not permitted.  Such an employee may not begin participation again during the remainder of the Offering, but may enroll in a subsequent Offering in accordance with Section 4.

 

8.                                       Grant of Options .  On each Offering Date, the Company will grant to each eligible employee who is then a Participant in the Plan an option (“Option”) to purchase on the last day of such Offering (the “Exercise Date”), at the Option Price hereinafter provided for, the lowest of (a) a number of shares of Common Stock determined by dividing such Participant’s accumulated payroll deductions on such Exercise Date by the Option Price (as defined herein), (b) a number of shares of Common Stock determined by multiplying $2,083 by the number of full months in such Offering and dividing the result by the Fair Market Value of the Common Stock on the Offering Date, or (c) such other lesser maximum number of shares as shall have been established by the Administrator in advance of the Offering; provided, however, that such Option shall be subject to the limitations set forth below.  Each Participant’s Option shall be exercisable only to the extent of such Participant’s accumulated payroll deductions on the Exercise Date.  The purchase price for each share purchased under each Option (the “Option Price”) will be 85 percent of the Fair Market Value of the Common Stock on the Offering Date or the Exercise Date, whichever is less.

 

Notwithstanding the foregoing, no Participant may be granted an option hereunder if such Participant, immediately after the option was granted, would be treated as owning stock possessing 5 percent or more of the total combined voting power or value of all classes of stock of the Company or any Parent or Subsidiary (as defined in Section 11).  For purposes of the preceding sentence, the attribution rules of Section 424(d) of the Code shall apply in determining the stock ownership of a Participant, and all stock which the Participant has a contractual right to purchase shall be treated as stock owned by the Participant.  In addition, no Participant may be granted an Option which permits his or her rights to purchase stock under the Plan, and any other employee stock purchase plan of the Company and its Parents and Subsidiaries, to accrue at a rate which exceeds $25,000 of the fair market value of such stock (determined on the option grant date or dates) for each calendar year in which the Option is outstanding at any time.  The purpose of the limitation in the preceding sentence is to comply with Section 423(b)(8) of the Code and shall be applied taking Options into account in the order in which they were granted.

 

9.                                       Exercise of Option and Purchase of Shares .  Each employee who continues to be a Participant in the Plan on the Exercise Date shall be deemed to have exercised his or her Option on such date and shall acquire from the Company such number of whole shares of Common Stock reserved for the purpose of the Plan as his or her accumulated payroll deductions on such date will purchase at the Option Price, subject to any other limitations contained in the Plan.

 



 

Any amount remaining in a Participant’s account at the end of an Offering solely by reason of the inability to purchase a fractional share will be carried forward to the next Offering; any other balance remaining in a Participant’s account at the end of an Offering will be refunded to the Participant promptly.

 

10.                                Issuance of Certificates .  Certificates representing shares of Common Stock purchased under the Plan may be issued only in the name of the employee, in the name of the employee and another person of legal age as joint tenants with rights of survivorship, or in the name of a broker authorized by the employee to be his, her or their, nominee for such purpose.

 

11.                                Definitions .

 

The term “Compensation” means the amount of base pay, prior to salary reduction pursuant to Sections 125, 132(f) or 401(k) of the Code, but excluding overtime, commissions, incentive or bonus awards, allowances and reimbursements for expenses such as relocation allowances or travel expenses, income or gains on the exercise of Company stock options, and similar items.

 

The term “Designated Subsidiary” means any present or future Subsidiary (as defined below) that has been designated by the Board to participate in the Plan.  The Board may so designate any Subsidiary, or revoke any such designation, at any time and from time to time, either before or after the Plan is approved by the stockholders.

 

The term “Fair Market Value of the Common Stock” on any given date means the fair market value of the Common Stock determined in good faith by the Administrator; provided, however, that if the Common Stock is admitted to quotation on the National Association of Securities Dealers Automated Quotation System (“NASDAQ”), NASDAQ Global Market or another national securities exchange, the determination shall be made by reference to the closing price on such date.  If there is no closing price for such date, the determination shall be made by reference to the last date preceding such date for which there is a closing price.

 

The term “Initial Public Offering” means the first underwritten, firm commitment public offering pursuant to an effective registration statement under the Securities Act of 1933, as amended, covering the offer and sale by the Company of its equity securities, or such other event as a result of or following which the Company’s Common Stock shall be publicly held.

 

The term “Parent” means a “parent corporation” with respect to the Company, as defined in Section 424(e) of the Code.

 

The term “Participant” means an individual who is eligible as determined in Section 3 and who has complied with the provisions of Section 4.

 

The term “Subsidiary” means a “subsidiary corporation” with respect to the Company, as defined in Section 424(f) of the Code.

 



 

12.                                Rights on Termination of Employment .  If a Participant’s employment terminates for any reason before the Exercise Date for any Offering, no payroll deduction will be taken from any pay due and owing to the Participant and the balance in the Participant’s account will be paid to such Participant or, in the case of such Participant’s death, to his or her designated beneficiary as if such Participant had withdrawn from the Plan under Section 7.  An employee will be deemed to have terminated employment, for this purpose, if the corporation that employs him or her, having been a Designated Subsidiary, ceases to be a Subsidiary, or if the employee is transferred to any corporation other than the Company or a Designated Subsidiary.  An employee will not be deemed to have terminated employment for this purpose, if the employee is on an approved leave of absence for military service or sickness or for any other purpose approved by the Company, if the employee’s right to reemployment is guaranteed either by a statute or by contract or under the policy pursuant to which the leave of absence was granted or if the Administrator otherwise provides in writing.

 

13.                                Special Rules .  Notwithstanding anything herein to the contrary, the Administrator may adopt special rules applicable to the employees of a particular Designated Subsidiary, whenever the Administrator determines that such rules are necessary or appropriate for the implementation of the Plan in a jurisdiction where such Designated Subsidiary has employees; provided that such rules are consistent with the requirements of Section 423(b) of the Code.  Any special rules established pursuant to this Section 13 shall, to the extent possible, result in the employees subject to such rules having substantially the same rights as other Participants in the Plan.

 

14.                                Optionees Not Stockholders .  Neither the granting of an Option to a Participant nor the deductions from his or her pay shall constitute such Participant a holder of the shares of Common Stock covered by an Option under the Plan until such shares have been purchased by and issued to him or her.

 

15.                                Rights Not Transferable .  Rights under the Plan are not transferable by a Participant other than by will or the laws of descent and distribution, and are exercisable during the Participant’s lifetime only by the Participant.

 

16.                                Application of Funds .  All funds received or held by the Company under the Plan may be combined with other corporate funds and may be used for any corporate purpose.

 

17.                                Adjustment in Case of Changes Affecting Common Stock .  In the event of a subdivision of outstanding shares of Common Stock, the payment of a dividend in Common Stock or any other change affecting the Common Stock, the number of shares approved for the Plan and the share limitation set forth in Section 8 shall be equitably or proportionately adjusted to give proper effect to such event.

 

18.                                Amendment of the Plan .  The Board may at any time and from time to time amend the Plan in any respect, except that without the approval within 12 months of such Board action by the stockholders, no amendment shall be made increasing the number of shares approved for the Plan or making any other change that would require stockholder approval in

 



 

order for the Plan, as amended, to qualify as an “employee stock purchase plan” under Section 423(b) of the Code.

 

19.                                Insufficient Shares .  If the total number of shares of Common Stock that would otherwise be purchased on any Exercise Date plus the number of shares purchased under previous Offerings under the Plan exceeds the maximum number of shares issuable under the Plan, the shares then available shall be apportioned among Participants in proportion to the amount of payroll deductions accumulated on behalf of each Participant that would otherwise be used to purchase Common Stock on such Exercise Date.

 

20.                                Termination of the Plan .  The Plan may be terminated at any time by the Board.  Upon termination of the Plan, all amounts in the accounts of Participants shall be promptly refunded.

 

21.                                Governmental Regulations .  The Company’s obligation to sell and deliver Common Stock under the Plan is subject to obtaining all governmental approvals required in connection with the authorization, issuance, or sale of such stock.

 

22.                                Governing Law .  This Plan and all Options and actions taken thereunder shall be governed by, and construed in accordance with, the laws of the State of Delaware, applied without regard to conflict of law principles.

 

23.                                Issuance of Shares .  Shares may be issued upon exercise of an Option from authorized but unissued Common Stock, from shares held in the treasury of the Company, or from any other proper source.

 

24.                                Tax Withholding .  Participation in the Plan is subject to any minimum required tax withholding on income of the Participant in connection with the Plan.  Each Participant agrees, by entering the Plan, that the Company and its Subsidiaries shall have the right to deduct any such taxes from any payment of any kind otherwise due to the Participant, including shares issuable under the Plan.

 

25.                                Notification Upon Sale of Shares .  Each Participant agrees, by entering the Plan, to give the Company prompt notice of any disposition of shares purchased under the Plan where such disposition occurs within two years after the date of grant of the Option pursuant to which such shares were purchased.

 

26.                                Effective Date and Approval of Shareholders .  The Plan shall take effect on the date of the effectiveness of the Registration Statement on Form S-1 in connection with the Company’s Initial Public Offering, subject to approval by the holders of a majority of the votes cast at a meeting of stockholders at which a quorum is present or by written consent of the stockholders.

 

DATE APPROVED BY BOARD OF DIRECTORS:

October 5, 2016

 

 

DATE APPROVED BY STOCKHOLDERS:

[ · ], 2016

 




Exhibit 10.5

 

RA PHARMACEUTICALS, INC.

 

FORM OF DIRECTOR INDEMNIFICATION AGREEMENT

 

This Indemnification Agreement (“ Agreement ”) is made as of                         by and between Ra Pharmaceuticals, Inc., a Delaware corporation (the “ Company ”), and [Director] (“ Indemnitee ”).

 

RECITALS

 

WHEREAS, the Company desires to attract and retain the services of highly qualified individuals, such as Indemnitee, to serve the Company;

 

WHEREAS, in order to induce Indemnitee to provide or continue to provide services to the Company, the Company wishes to provide for the indemnification of, and advancement of expenses to, Indemnitee to the maximum extent permitted by law;

 

WHEREAS, the Third Amended and Restated Certificate of Incorporation (as amended and in effect from time to time, the “ Charter ”) and the Amended and Restated Bylaws (as amended and in effect from time to time, the “ Bylaws ”) of the Company require indemnification of the officers and directors of the Company, and Indemnitee may also be entitled to indemnification pursuant to the General Corporation Law of the State of Delaware (the “ DGCL ”);

 

WHEREAS, the Charter, the Bylaws and the DGCL expressly provide that the indemnification provisions set forth therein are not exclusive, and thereby contemplate that contracts may be entered into between the Company and members of the board of directors, officers and other persons with respect to indemnification;

 

WHEREAS, the Board of Directors of the Company (the “ Board ”) has determined that the increased difficulty in attracting and retaining highly qualified persons such as Indemnitee is detrimental to the best interests of the Company’s stockholders;

 

WHEREAS, it is reasonable and prudent for the Company contractually to obligate itself to indemnify, and to advance expenses on behalf of, such persons to the fullest extent permitted by applicable law, regardless of any amendment or revocation of the Charter or the Bylaws, so that they will serve or continue to serve the Company free from undue concern that they will not be so indemnified;

 

WHEREAS, this Agreement is a supplement to and in furtherance of the indemnification provided in the Charter, the Bylaws and any resolutions adopted pursuant thereto, and shall not be deemed a substitute therefor, nor to diminish or abrogate any rights of Indemnitee thereunder; and

 

[WHEREAS, Indemnitee has certain rights to indemnification and/or insurance provided by [  ] (“[ ]”) which Indemnitee and [ ] intend to be secondary to the primary obligation of the

 

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Company to indemnify Indemnitee as provided in this Agreement, with the Company’s acknowledgment and agreement to the foregoing being a material condition to Indemnitee’s willingness to serve or continue to serve on the Board.]

 

NOW, THEREFORE, in consideration of the premises and the covenants contained herein, the Company and Indemnitee do hereby covenant and agree as follows:

 

Section 1.                                            Services to the Company .  Indemnitee agrees to [continue to] serve as a director of the Company.  Indemnitee may at any time and for any reason resign from such position (subject to any other contractual obligation or any obligation imposed by law).  This Agreement shall not be deemed an employment contract between the Company (or any of its subsidiaries or any Enterprise) and Indemnitee.

 

Section 2.                                            Definitions .

 

As used in this Agreement:

 

(a)                                  Change in Control ” shall mean (i) the sale of all or substantially all of the assets of the Company on a consolidated basis to an unrelated person or entity, (ii) a merger, reorganization or consolidation pursuant to which the holders of the Company’s outstanding voting power and outstanding stock immediately prior to such transaction do not own a majority of the outstanding voting power and outstanding stock or other equity interests of the resulting or successor entity (or its ultimate parent, if applicable) immediately upon completion of such transaction, (iii) the sale of all of the Stock of the Company to an unrelated person, entity or group thereof acting in concert, or (iv) any other transaction in which the owners of the Company’s outstanding voting power immediately prior to such transaction do not own at least a majority of the outstanding voting power of the Company or any successor entity immediately upon completion of the transaction other than as a result of the acquisition of securities directly from the Company.

 

(b)                                  Corporate Status ” describes the status of a person as a current or former director of the Company or current or former director, manager, partner, officer, employee, agent or trustee of any other Enterprise which such person is or was serving at the request of the Company.

 

(c)                                   Enforcement Expenses ” shall include all reasonable attorneys’ fees, court costs, transcript costs, fees of experts, travel expenses, duplicating costs, printing and binding costs, telephone charges, postage, delivery service fees, and all other out-of-pocket disbursements or expenses of the types customarily incurred in connection with an action to enforce indemnification or advancement rights, or an appeal from such action.  Expenses, however, shall not include fees, salaries, wages or benefits owed to Indemnitee.

 

(d)                                  Enterprise ” shall mean any corporation (other than the Company), partnership, joint venture, trust, employee benefit plan, limited liability company, or other legal entity of which Indemnitee is or was serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee.

 

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(e)                                   Expenses ” shall include all reasonable attorneys’ fees, court costs, transcript costs, fees of experts, travel expenses, duplicating costs, printing and binding costs, telephone charges, postage, delivery service fees, and all other out-of-pocket disbursements or expenses of the types customarily incurred in connection with prosecuting, defending, preparing to prosecute or defend, investigating, being or preparing to be a witness in, or otherwise participating in, a Proceeding or an appeal resulting from a Proceeding.  Expenses, however, shall not include any judgments, fines or penalties actually levied against Indemnitee for such individual’s violations of law.

 

(f)                                    Independent Counsel ” means a law firm, or a partner (or, if applicable, member or shareholder) of such a law firm, that is experienced in matters of Delaware corporation law and neither presently is, nor in the past five (5) years has been, retained to represent: (i) the Company, any subsidiary of the Company, any Enterprise or Indemnitee in any matter material to any such party; or (ii) any other party to the Proceeding giving rise to a claim for indemnification hereunder.  Notwithstanding the foregoing, the term “Independent Counsel” shall not include any person who, under the applicable standards of professional conduct then prevailing, would have a conflict of interest in representing either the Company or Indemnitee in an action to determine Indemnitee’s rights under this Agreement.  The Company agrees to pay the reasonable fees and expenses of the Independent Counsel referred to above and to fully indemnify such counsel against any and all expenses, claims, liabilities and damages arising out of or relating to this Agreement or its engagement pursuant hereto.

 

(g)                                   The term “ Proceeding ” shall include any threatened, pending or completed action, suit, arbitration, alternate dispute resolution mechanism, investigation, inquiry, administrative hearing or any other actual, threatened or completed proceeding, whether brought in the right of the Company or otherwise and whether of a civil, criminal, administrative, regulatory or investigative nature, and whether formal or informal, in which Indemnitee was, is or will be involved as a party or otherwise by reason of the fact that Indemnitee is or was a director of the Company or is or was serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee of any Enterprise or by reason of any action taken by Indemnitee or of any action taken on his or her part while acting as a director of the Company or while serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee of any Enterprise, in each case whether or not serving in such capacity at the time any liability or expense is incurred for which indemnification, reimbursement or advancement of expenses can be provided under this Agreement; provided , however , that the term “Proceeding” shall not include any action, suit or arbitration, or part thereof, initiated by Indemnitee to enforce Indemnitee’s rights under this Agreement as provided for in Section 12(a) of this Agreement.

 

Section 3.                                            Indemnity in Third-Party Proceedings .  The Company shall indemnify Indemnitee to the extent set forth in this Section 3 if Indemnitee is, or is threatened to be made, a party to or a participant in any Proceeding, other than a Proceeding by or in the right of the Company to procure a judgment in its favor.  Pursuant to this Section 3, Indemnitee shall be indemnified against all Expenses, judgments, fines, penalties, excise taxes, and amounts paid in

 

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settlement actually and reasonably incurred by Indemnitee or on his or her behalf in connection with such Proceeding or any claim, issue or matter therein.

 

Section 4.                                            Indemnity in Proceedings by or in the Right of the Company .  The Company shall indemnify Indemnitee to the extent set forth in this Section 4 if Indemnitee is, or is threatened to be made, a party to or a participant in any Proceeding by or in the right of the Company to procure a judgment in its favor.  Pursuant to this Section 4, Indemnitee shall be indemnified against all Expenses actually and reasonably incurred by Indemnitee or on his or her behalf in connection with such Proceeding or any claim, issue or matter therein.  No indemnification for Expenses shall be made under this Section 4 in respect of any claim, issue or matter as to which Indemnitee shall have been finally adjudged by a court to be liable to the Company, unless and only to the extent that the Delaware Court of Chancery (the “ Delaware Court ”) shall determine upon application that, despite the adjudication of liability but in view of all the circumstances of the case, Indemnitee is fairly and reasonably entitled to indemnification for such expenses as the Delaware Court shall deem proper.

 

Section 5.                                            Indemnification for Expenses of a Party Who is Wholly or Partly Successful .  Notwithstanding any other provisions of this Agreement and except as provided in Section 7, to the extent that Indemnitee is a party to or a participant in any Proceeding and is successful in such Proceeding or in defense of any claim, issue or matter therein, the Company shall indemnify Indemnitee against all Expenses actually and reasonably incurred by him or her in connection therewith.  If Indemnitee is not wholly successful in such Proceeding but is successful as to one or more but less than all claims, issues or matters in such Proceeding, the Company shall indemnify Indemnitee against all Expenses actually and reasonably incurred by Indemnitee or on his or her behalf in connection with each claim, issue or matter for the maximum portion for which the Indemnitee is entitled.  For purposes of this Section and without limitation, the termination of any claim, issue or matter in such a Proceeding by dismissal, with or without prejudice, shall be deemed to be a successful result as to such claim, issue or matter.

 

Section 6.                                            Reimbursement for Expenses of a Witness or in Response to a Subpoena .  Notwithstanding any other provision of this Agreement, to the extent that Indemnitee, by reason of his or her Corporate Status, (i) is a witness in any Proceeding to which Indemnitee is not a party and is not threatened to be made a party or (ii) receives a subpoena with respect to any Proceeding to which Indemnitee is not a party and is not threatened to be made a party, the Company shall reimburse Indemnitee for all Expenses actually and reasonably incurred by him or her or on his or her behalf in connection therewith.

 

Section 7.                                            Exclusions .  Notwithstanding any provision in this Agreement to the contrary, the Company shall not be obligated under this Agreement:

 

(a)                                  to indemnify for amounts otherwise indemnifiable hereunder (or for which advancement is provided hereunder) if and to the extent that Indemnitee has otherwise actually received such amounts under any insurance policy, contract, agreement or otherwise; provided that the foregoing shall not affect the rights of Indemnitee or the Fund Indemnitors as set forth in Section 13(c);

 

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(b)                                  to indemnify for a final judgment rendered against the Indemnitee for an accounting of profits made from the purchase and sale (or sale and purchase) by Indemnitee of securities of the Company within the meaning of Section 16(b) of the Securities Exchange Act of 1934, as amended, or similar provisions of state statutory law or common law;

 

(c)                                   to indemnify with respect to any Proceeding, or part thereof, brought by Indemnitee against the Company, any legal entity which it controls, any director or officer thereof or any third party, unless (i) the Board has consented to the initiation of such Proceeding or part thereof and (ii) the Company provides the indemnification, in its sole discretion, pursuant to the powers vested in the Company under applicable law; provided , however , that this Section 7(d) shall not apply to (A) counterclaims or affirmative defenses asserted by Indemnitee in an action brought against Indemnitee or (B) any action brought by Indemnitee for indemnification or advancement from the Company under this Agreement or under any directors’ and officers’ liability insurance policies maintained by the Company in the suit for which indemnification or advancement is being sought as described in Section 12; or

 

(d)                                  to provide any indemnification or advancement of expenses that is prohibited by applicable law (as such law exists at the time payment would otherwise be required pursuant to this Agreement).

 

Section 8.                                            Advancement of Expenses .  Subject to Section 9(b), the Company shall advance, to the extent not prohibited by law, the Expenses incurred by Indemnitee in connection with any Proceeding, and such advancement shall be made as incurred, and such advancement shall be made within thirty (30) days after the receipt by the Company of a statement or statements requesting such advances (including any invoices received by Indemnitee, which such invoices may be redacted as necessary to avoid the waiver of any privilege accorded by applicable law) from time to time, whether prior to or after final disposition of any Proceeding.  Advances shall be unsecured and interest free.  Advances shall be made without regard to Indemnitee’s ability to repay the expenses and without regard to Indemnitee’s ultimate entitlement to indemnification under the other provisions of this Agreement.  Indemnitee shall qualify for advances upon the execution and delivery to the Company of this Agreement which shall constitute an undertaking providing that Indemnitee undertakes to the fullest extent required by law to repay the advance if and to the extent that it is ultimately determined by a court of competent jurisdiction in a final judgment, not subject to appeal, that Indemnitee is not entitled to be indemnified by the Company.  The right to advances under this paragraph shall in all events continue until final disposition of any Proceeding, including any appeal therein.  Nothing in this Section 8 shall limit Indemnitee’s right to advancement pursuant to Section 12(e) of this Agreement.

 

Section 9.                                          Procedure for Notification and Defense of Claim .

 

(a)                                  To obtain indemnification under this Agreement, Indemnitee shall submit to the Company a written request therefor specifying the basis for the claim, the amounts for which Indemnitee is seeking payment under this Agreement, and all documentation related thereto as reasonably requested by the Company.

 

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(b)                                  In the event that the Company shall be obligated hereunder to provide indemnification for or make any advancement of Expenses with respect to any Proceeding, the Company shall be entitled to assume the defense of such Proceeding, or any claim, issue or matter therein, with counsel approved by Indemnitee (which approval shall not be unreasonably withheld or delayed) upon the delivery to Indemnitee of written notice of the Company’s election to do so.  After delivery of such notice, approval of such counsel by Indemnitee and the retention of such counsel by the Company, the Company will not be liable to Indemnitee under this Agreement for any fees or expenses of separate counsel subsequently employed by or on behalf of Indemnitee with respect to the same Proceeding; provided that (i) Indemnitee shall have the right to employ separate counsel in any such Proceeding at Indemnitee’s expense and (ii) if (A) the employment of separate counsel by Indemnitee has been previously authorized by the Company, (B) Indemnitee shall have reasonably concluded that there may be a conflict of interest between the Company and Indemnitee in the conduct of such defense, or (C) the Company shall not continue to retain such counsel to defend such Proceeding, then the fees and expenses actually and reasonably incurred by Indemnitee with respect to his or her separate counsel shall be Expenses hereunder.

 

(c)                                   In the event that the Company does not assume the defense in a Proceeding pursuant to paragraph (b) above, then the Company will be entitled to participate in the Proceeding at its own expense.

 

(d)                                  The Company shall not be liable to indemnify Indemnitee under this Agreement for any amounts paid in settlement of any Proceeding effected without its prior written consent (which consent shall not be unreasonably withheld or delayed).  The Company shall not, without the prior written consent of Indemnitee (which consent shall not be unreasonably withheld or delayed), enter into any settlement which (i) includes an admission of fault of Indemnitee, any non-monetary remedy imposed on Indemnitee or any monetary damages for which Indemnitee is not wholly and actually indemnified hereunder or (ii) with respect to any Proceeding with respect to which Indemnitee may be or is made a party or may be otherwise entitled to seek indemnification hereunder, does not include the full release of Indemnitee from all liability in respect of such Proceeding.

 

Section 10.                                     Procedure Upon Application for Indemnification .

 

(a)                                  Upon written request by Indemnitee for indemnification pursuant to Section 9(a), a determination, if such determination is required by applicable law, with respect to Indemnitee’s entitlement to indemnification hereunder shall be made in the specific case by one of the following methods:  (x) if a Change in Control shall have occurred, by Independent Counsel in a written opinion to the Board; or (y) if a Change in Control shall not have occurred: (i) by a majority vote of the disinterested directors, even though less than a quorum; (ii) by a committee of disinterested directors designated by a majority vote of the disinterested directors, even though less than a quorum; or (iii) if there are no disinterested directors or if the disinterested directors so direct, by Independent Counsel in a written opinion to the Board.  For purposes hereof, disinterested directors are those members of the Board who are not parties to the action, suit or proceeding in respect of which indemnification is sought.  In the case that such determination is made by Independent Counsel, a copy of Independent Counsel’s written opinion

 

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shall be delivered to Indemnitee and, if it is so determined that Indemnitee is entitled to indemnification, payment to Indemnitee shall be made within thirty (30) days after such determination.  Indemnitee shall cooperate with the Independent Counsel or the Company, as applicable, in making such determination with respect to Indemnitee’s entitlement to indemnification, including providing to such counsel or the Company, upon reasonable advance request, any documentation or information which is not privileged or otherwise protected from disclosure and which is reasonably available to Indemnitee and reasonably necessary to such determination.  Any out-of-pocket costs or expenses (including reasonable attorneys’ fees and disbursements) actually and reasonably incurred by Indemnitee in so cooperating with the Independent Counsel or the Company shall be borne by the Company (irrespective of the determination as to Indemnitee’s entitlement to indemnification) and the Company hereby indemnifies and agrees to hold Indemnitee harmless therefrom.

 

(b)                                  If the determination of entitlement to indemnification is to be made by Independent Counsel pursuant to Section 10(a), the Independent Counsel shall be selected by the Board if a Change in Control shall not have occurred or, if a Change in Control shall have occurred, by Indemnitee.  Indemnitee or the Company, as the case may be, may, within ten (10) days after written notice of such selection, deliver to the Company or Indemnitee, as the case may be, a written objection to such selection; provided , however , that such objection may be asserted only on the ground that the Independent Counsel so selected does not meet the requirements of “Independent Counsel” as defined in Section 2 of this Agreement, and the objection shall set forth with particularity the factual basis of such assertion.  Absent a proper and timely objection, the person so selected shall act as Independent Counsel.  If such written objection is so made and substantiated, the Independent Counsel so selected may not serve as Independent Counsel unless and until such objection is withdrawn or the Delaware Court has determined that such objection is without merit.  If, within twenty (20) days after the later of (i) submission by Indemnitee of a written request for indemnification pursuant to Section 9(a), and (ii) the final disposition of the Proceeding, including any appeal therein, no Independent Counsel shall have been selected without objection, either Indemnitee or the Company may petition the Delaware Court for resolution of any objection which shall have been made by Indemnitee or the Company to the selection of Independent Counsel and/or for the appointment as Independent Counsel of a person selected by the court or by such other person as the court shall designate.  The person with respect to whom all objections are so resolved or the person so appointed shall act as Independent Counsel under Section 10(a) hereof.  Upon the due commencement of any judicial proceeding or arbitration pursuant to Section 12(a) of this Agreement, Independent Counsel shall be discharged and relieved of any further responsibility in such capacity (subject to the applicable standards of professional conduct then prevailing).

 

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Section 11.                                   Presumptions and Effect of Certain Proceedings .

 

(a)                                  To the extent permitted by applicable law, in making a determination with respect to entitlement to indemnification hereunder, it shall be presumed that Indemnitee is entitled to indemnification under this Agreement if Indemnitee has submitted a request for indemnification in accordance with Section 9(a) of this Agreement, and the Company shall have the burden of proof to overcome that presumption in connection with the making of any determination contrary to that presumption.

 

(b)                                  The termination of any Proceeding or of any claim, issue or matter therein, by judgment, order, settlement or conviction, or upon a plea of guilty, nolo contendere or its equivalent, shall not (except as otherwise expressly provided in this Agreement) of itself adversely affect the right of Indemnitee to indemnification or create a presumption that Indemnitee did not act in good faith and in a manner which he or she reasonably believed to be in or not opposed to the best interests of the Company or, with respect to any criminal Proceeding, that Indemnitee had reasonable cause to believe that his or her conduct was unlawful. It shall in any event be presumed that Indemnitee has at all times acted in good faith and in a manner he reasonably believed to be in or not opposed to the best interests of the Company.  Anyone seeking to overcome this presumption shall have the burden of proof and the burden of persuasion by clear and convincing evidence.

 

(c)                                   The knowledge and/or actions, or failure to act, of any director, manager, partner, officer, employee, agent or trustee of the Company, any subsidiary of the Company, or any Enterprise shall not be imputed to Indemnitee for purposes of determining the right to indemnification under this Agreement.

 

Section 12.                                     Remedies of Indemnitee .

 

(a)                                  Subject to Section 12(f), in the event that (i) a determination is made pursuant to Section 10 of this Agreement that Indemnitee is not entitled to indemnification under this Agreement, (ii) advancement of Expenses is not timely made pursuant to Section 8 of this Agreement, (iii) no determination of entitlement to indemnification shall have been made pursuant to Section 10(a) of this Agreement within sixty (60) days after receipt by the Company of the request for indemnification for which a determination is to be made other than by Independent Counsel, (iv) payment of indemnification or reimbursement of expenses is not made pursuant to Section 5 or 6 or the last sentence of Section 10(a) of this Agreement within thirty (30) days after receipt by the Company of a written request therefor (including any invoices received by Indemnitee, which such invoices may be redacted as necessary to avoid the waiver of any privilege accorded by applicable law) or (v) payment of indemnification pursuant to Section 3 or 4 of this Agreement is not made within thirty (30) days after a determination has been made that Indemnitee is entitled to indemnification, Indemnitee shall be entitled to an adjudication by the Delaware Court of his or her entitlement to such indemnification or advancement.  Alternatively, Indemnitee, at his or her option, may seek an award in arbitration to be conducted by a single arbitrator pursuant to the Commercial Arbitration Rules of the American Arbitration Association.  Indemnitee shall commence such proceeding seeking an adjudication or an award in arbitration within 180 days following the date on which Indemnitee first has the right to commence such proceeding pursuant to this Section 12(a); provided ,

 

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however , that the foregoing time limitation shall not apply in respect of a proceeding brought by Indemnitee to enforce his or her rights under Section 5 of this Agreement.  The Company shall not oppose Indemnitee’s right to seek any such adjudication or award in arbitration.

 

(b)                                  In the event that a determination shall have been made pursuant to Section 10(a) of this Agreement that Indemnitee is not entitled to indemnification, any judicial proceeding or arbitration commenced pursuant to this Section 12 shall be conducted in all respects as a de novo trial, or arbitration, on the merits and Indemnitee shall not be prejudiced by reason of that adverse determination.  In any judicial proceeding or arbitration commenced pursuant to this Section 12, the Company shall have the burden of proving Indemnitee is not entitled to indemnification or advancement, as the case may be.

 

(c)                                   If a determination shall have been made pursuant to Section 10(a) of this Agreement that Indemnitee is entitled to indemnification, the Company shall be bound by such determination in any judicial proceeding or arbitration commenced pursuant to this Section 12, absent (i) a misstatement by Indemnitee of a material fact, or an omission of a material fact necessary to make Indemnitee’s statement not materially misleading, in connection with the request for indemnification, or (ii) a prohibition of such indemnification under applicable law.

 

(d)                                  The Company shall be precluded from asserting in any judicial proceeding or arbitration commenced pursuant to this Section 12 that the procedures and presumptions of this Agreement are not valid, binding and enforceable and shall stipulate in any such court or before any such arbitrator that the Company is bound by all the provisions of this Agreement.

 

(e)                                   The Company shall indemnify Indemnitee to the fullest extent permitted by law against any and all Enforcement Expenses and, if requested by Indemnitee, shall (within thirty (30) days after receipt by the Company of a written request therefor) advance, to the extent not prohibited by law, such Enforcement Expenses to Indemnitee, which are incurred by Indemnitee in connection with any action brought by Indemnitee for indemnification or advancement from the Company under this Agreement or under any directors’ and officers’ liability insurance policies maintained by the Company in the suit for which indemnification or advancement is being sought.  Such written request for advancement shall include invoices received by Indemnitee in connection with such Enforcement Expenses but, in the case of invoices in connection with legal services, any references to legal work performed or to expenditures made that would cause Indemnitee to waive any privilege accorded by applicable law need not be included with the invoice.

 

(f)                                    Notwithstanding anything in this Agreement to the contrary, no determination as to entitlement to indemnification under this Agreement shall be required to be made prior to the final disposition of the Proceeding, including any appeal therein.

 

Section 13.                                   Non-exclusivity; Survival of Rights; Insurance; Primacy of Indemnification; Subrogation .

 

(a)                                  The rights of indemnification and to receive advancement as provided by this Agreement shall not be deemed exclusive of any other rights to which Indemnitee may at any time be entitled under applicable law, the Charter, the Bylaws, any agreement, a vote of

 

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stockholders or a resolution of directors, or otherwise.  No amendment, alteration or repeal of this Agreement or of any provision hereof shall limit or restrict any right of Indemnitee under this Agreement in respect of any action taken or omitted by such Indemnitee in his or her Corporate Status prior to such amendment, alteration or repeal.  To the extent that a change in Delaware law, whether by statute or judicial decision, permits greater indemnification or advancement than would be afforded currently under the Charter, Bylaws and this Agreement, it is the intent of the parties hereto that Indemnitee shall enjoy by this Agreement the greater benefits so afforded by such change.  No right or remedy herein conferred is intended to be exclusive of any other right or remedy, and every other right and remedy shall be cumulative and in addition to every other right and remedy given hereunder or now or hereafter existing at law or in equity or otherwise.  The assertion or employment of any right or remedy hereunder, or otherwise, shall not prevent the concurrent assertion or employment of any other right or remedy.

 

(b)                                  To the extent that the Company maintains an insurance policy or policies providing liability insurance for directors, managers, partners, officers, employees, agents or trustees of the Company or of any other Enterprise, Indemnitee shall be covered by such policy or policies in accordance with its or their terms to the maximum extent of the coverage available for any such director, manager, partner, officer, employee, agent or trustee under such policy or policies.  If, at the time of the receipt of a notice of a claim pursuant to the terms hereof, the Company has director and officer liability insurance in effect, the Company shall give prompt notice of the commencement of such proceeding to the insurers in accordance with the procedures set forth in the respective policies.

 

(c)                                   [The Company hereby acknowledges that Indemnitee has certain rights to indemnification, advancement of expenses and/or insurance provided by [   ] and certain of its affiliates (collectively, the “ Fund Indemnitors ”).  The Company hereby agrees (i) that it is the indemnitor of first resort ( i.e. , its obligations to Indemnitee are primary and any obligation of the Fund Indemnitors to advance expenses or to provide indemnification for the same expenses or liabilities incurred by Indemnitee are secondary), (ii) that it shall be required to advance the full amount of expenses incurred by Indemnitee and shall be liable for the full amount of all Expenses, judgments, penalties, fines and amounts paid in settlement to the extent legally permitted and as required by the terms of this Agreement and the Charter and/or Bylaws (or any other agreement between the Company and Indemnitee), without regard to any rights Indemnitee may have against the Fund Indemnitors, and (iii) that it irrevocably waives, relinquishes and releases the Fund Indemnitors from any and all claims against the Fund Indemnitors for contribution, subrogation or any other recovery of any kind in respect thereof.  The Company further agrees that no advancement or payment by the Fund Indemnitors on behalf of Indemnitee with respect to any claim for which Indemnitee has sought indemnification from the Company shall affect the foregoing and the Fund Indemnitors shall have a right of contribution and/or be subrogated to the extent of such advancement or payment to all of the rights of recovery of Indemnitee against the Company.  The Company and Indemnitee agree that the Fund Indemnitors are express third party beneficiaries of the terms of this Section 13(c).]

 

(d)                                  [Except as provided in paragraph (c) above,] in the event of any payment under this Agreement, the Company shall be subrogated to the extent of such payment to all of the rights of recovery of Indemnitee [(other than against the Fund Indemnitors)], who shall execute all papers required and take all action necessary to secure such rights, including

 

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execution of such documents as are necessary to enable the Company to bring suit to enforce such rights.

 

(e)                                   [Except as provided in paragraph (c) above,] the Company’s obligation to provide indemnification or advancement hereunder to Indemnitee who is or was serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee of any other Enterprise shall be reduced by any amount Indemnitee has actually received as indemnification or advancement from such other Enterprise.

 

Section 14.                                     Duration of Agreement .  This Agreement shall continue until and terminate upon the later of: (a) ten (10) years after the date that Indemnitee shall have ceased to serve as a director of the Company or (b) one (1) year after the final termination of any Proceeding, including any appeal, then pending in respect of which Indemnitee is granted rights of indemnification or advancement hereunder and of any proceeding commenced by Indemnitee pursuant to Section 12 of this Agreement relating thereto.  This Agreement shall be binding upon the Company and its successors and assigns and shall inure to the benefit of Indemnitee and his or her heirs, executors and administrators.  The Company shall require and cause any successor (whether direct or indirect by purchase, merger, consolidation or otherwise) to all, substantially all or a substantial part, of the business and/or assets of the Company, by written agreement in form and substance satisfactory to Indemnitee, expressly to assume and agree to perform this Agreement in the same manner and to the same extent that the Company would be required to perform if no such succession had taken place.

 

Section 15.                                     Severability .  If any provision or provisions of this Agreement shall be held to be invalid, illegal or unenforceable for any reason whatsoever: (a) the validity, legality and enforceability of the remaining provisions of this Agreement (including, without limitation, each portion of any section of this Agreement containing any such provision held to be invalid, illegal or unenforceable, that is not itself invalid, illegal or unenforceable) shall not in any way be affected or impaired thereby and shall remain enforceable to the fullest extent permitted by law; (b) such provision or provisions shall be deemed reformed to the extent necessary to conform to applicable law and to give the maximum effect to the intent of the parties hereto; and (c) to the fullest extent possible, the provisions of this Agreement (including, without limitation, each portion of any section of this Agreement containing any such provision held to be invalid, illegal or unenforceable, that is not itself invalid, illegal or unenforceable) shall be construed so as to give effect to the intent manifested thereby.

 

Section 16.                                     Enforcement .

 

(a)                                  The Company expressly confirms and agrees that it has entered into this Agreement and assumed the obligations imposed on it hereby in order to induce Indemnitee to serve or continue to serve as a director of the Company, and the Company acknowledges that Indemnitee is relying upon this Agreement in serving as a director of the Company.

 

(b)                                  This Agreement constitutes the entire agreement between the parties hereto with respect to the subject matter hereof and supersedes all prior agreements and understandings, oral, written and implied, between the parties hereto with respect to the subject matter hereof; provided , however , that this Agreement is a supplement to and in furtherance of

 

11



 

the Charter, the Bylaws and applicable law, and shall not be deemed a substitute therefor, nor to diminish or abrogate any rights of Indemnitee thereunder.

 

Section 17.                                     Modification and Waiver .  No supplement, modification or amendment, or waiver of any provision, of this Agreement shall be binding unless executed in writing by the parties thereto.  No waiver of any of the provisions of this Agreement shall be deemed or shall constitute a waiver of any other provisions of this Agreement nor shall any waiver constitute a continuing waiver.  No supplement, modification or amendment of this Agreement or of any provision hereof shall limit or restrict any right of Indemnitee under this Agreement in respect of any action taken or omitted by such Indemnitee prior to such supplement, modification or amendment.

 

Section 18.                                     Notice by Indemnitee .  Indemnitee agrees promptly to notify the Company in writing upon being served with any summons, citation, subpoena, complaint, indictment, information or other document relating to any Proceeding or matter which may be subject to indemnification, reimbursement or advancement as provided hereunder.  The failure of Indemnitee to so notify the Company shall not relieve the Company of any obligation which it may have to Indemnitee under this Agreement or otherwise.

 

Section 19.                                     Notices .  All notices, requests, demands and other communications under this Agreement shall be in writing and shall be deemed to have been duly given if (i) delivered by hand and receipted for by the party to whom said notice or other communication shall have been directed, (ii) mailed by certified or registered mail with postage prepaid, on the third business day after the date on which it is so mailed, (iii) mailed by reputable overnight courier and receipted for by the party to whom said notice or other communication shall have been directed or (iv) sent by facsimile transmission, with receipt of oral confirmation that such transmission has been received:

 

(a)                                  If to Indemnitee, at such address as Indemnitee shall provide to the Company.

 

(b)                                  If to the Company to:

 

Ra Pharmaceuticals , Inc.

87 Cambridge Park Drive

Cambridge, MA 02140

Attention: Douglas A. Treco

 

or to any other address as may have been furnished to Indemnitee by the Company.

 

Section 20.                                     Contribution .  To the fullest extent permissible under applicable law, if the indemnification provided for in this Agreement is unavailable to Indemnitee for any reason whatsoever, the Company, in lieu of indemnifying Indemnitee, shall contribute to the amount incurred by Indemnitee, whether for judgments, fines, penalties, excise taxes, amounts paid or to be paid in settlement and/or for Expenses, in connection with any Proceeding in such proportion as is deemed fair and reasonable in light of all of the circumstances in order to reflect (i) the relative benefits received by the Company and Indemnitee in connection with the event(s) and/or transaction(s) giving rise to such Proceeding; and/or (ii) the relative fault of the Company (and

 

12



 

its directors, officers, employees and agents) and Indemnitee in connection with such event(s) and/or transactions.

 

Section 21.                                     Internal Revenue Code Section 409A .  The Company intends for this Agreement to comply with the Indemnification exception under Section 1.409A-1(b)(10) of the regulations promulgated under the Internal Revenue Code of 1986, as amended (the “ Code ”), which provides that indemnification of, or the purchase of an insurance policy providing for payments of, all or part of the expenses incurred or damages paid or payable by Indemnitee with respect to a bona fide claim against Indemnitee or the Company do not provide for a deferral of compensation, subject to Section 409A of the Code, where such claim is based on actions or failures to act by Indemnitee in his or her capacity as a service provider of the Company.  The parties intend that this Agreement be interpreted and construed with such intent.

 

Section 22.                                     Applicable Law and Consent to Jurisdiction .  This Agreement and the legal relations among the parties shall be governed by, and construed and enforced in accordance with, the laws of the State of Delaware, without regard to its conflict of laws rules.  Except with respect to any arbitration commenced by Indemnitee pursuant to Section 12(a) of this Agreement, the Company and Indemnitee hereby irrevocably and unconditionally (i) agree that any action or proceeding arising out of or in connection with this Agreement shall be brought only in the Delaware Court, and not in any other state or federal court in the United States of America or any court in any other country, (ii) consent to submit to the exclusive jurisdiction of the Delaware Court for purposes of any action or proceeding arising out of or in connection with this Agreement, (iii) consent to service of process at the address set forth in Section 19 of this Agreement with the same legal force and validity as if served upon such party personally within the State of Delaware, (iv) waive any objection to the laying of venue of any such action or proceeding in the Delaware Court, and (v) waive, and agree not to plead or to make, any claim that any such action or proceeding brought in the Delaware Court has been brought in an improper or inconvenient forum.

 

Section 23.                                     Headings .  The headings of the paragraphs of this Agreement are inserted for convenience only and shall not be deemed to constitute part of this Agreement or to affect the construction thereof.

 

Section 24.                                     Identical Counterparts .  This Agreement may be executed in one or more counterparts, each of which shall for all purposes be deemed to be an original but all of which together shall constitute one and the same Agreement.  Only one such counterpart signed by the party against whom enforceability is sought needs to be produced to evidence the existence of this Agreement.

 

[Remainder of Page Intentionally Left Blank]

 

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IN WITNESS WHEREOF, the parties have caused this Agreement to be signed as of the day and year first above written.

 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

By:

 

 

 

Name: Douglas A. Treco

 

 

Title: Chief Executive Officer and President

 

 

 

 

 

 

 

 

 

 

 

[Indemnitee]

 


 

RA PHARMACEUTICALS, INC.

 

FORM OF OFFICER INDEMNIFICATION AGREEMENT

 

This Indemnification Agreement (“ Agreement ”) is made as of                  by and between Ra Pharmaceuticals, Inc., a Delaware corporation (the “ Company ”), and              (“ Indemnitee ”).(1)

 

RECITALS

 

WHEREAS, the Company desires to attract and retain the services of highly qualified individuals, such as Indemnitee, to serve the Company;

 

WHEREAS, in order to induce Indemnitee to provide or continue to provide services to the Company, the Company wishes to provide for the indemnification of, and advancement of expenses to, Indemnitee to the maximum extent permitted by law;

 

WHEREAS, the Third Amended and Restated Certificate of Incorporation (as amended and in effect from time to time, the “ Charter ”) and the Amended and Restated Bylaws (as amended and in effect from time to time, the “ Bylaws ”) of the Company require indemnification of the officers and directors of the Company, and Indemnitee may also be entitled to indemnification pursuant to the General Corporation Law of the State of Delaware (the “ DGCL ”);

 

WHEREAS, the Charter, the Bylaws and the DGCL expressly provide that the indemnification provisions set forth therein are not exclusive, and thereby contemplate that contracts may be entered into between the Company and members of the board of directors, officers and other persons with respect to indemnification;

 

WHEREAS, the Board of Directors of the Company (the “ Board ”) has determined that the increased difficulty in attracting and retaining highly qualified persons such as Indemnitee is detrimental to the best interests of the Company’s stockholders;

 

WHEREAS, it is reasonable and prudent for the Company contractually to obligate itself to indemnify, and to advance expenses on behalf of, such persons to the fullest extent permitted by applicable law, regardless of any amendment or revocation of the Charter or the Bylaws, so that they will serve or continue to serve the Company free from undue concern that they will not be so indemnified; and

 

WHEREAS, this Agreement is a supplement to and in furtherance of the indemnification provided in the Charter, the Bylaws and any resolutions adopted pursuant thereto, and shall not be deemed a substitute therefor, nor to diminish or abrogate any rights of Indemnitee thereunder.

 

NOW, THEREFORE, in consideration of the premises and the covenants contained herein, the Company and Indemnitee do hereby covenant and agree as follows:

 


(1)  To be entered into with all C-level officers and Section 16 officers.

 



 

Section 1.                                            Services to the Company .  Indemnitee agrees to [continue to] serve as [a director and] an officer of the Company.  Indemnitee may at any time and for any reason resign from [any] such position (subject to any other contractual obligation or any obligation imposed by law), in which event the Company shall have no obligation under this Agreement to continue Indemnitee in such position.  This Agreement shall not be deemed an employment contract between the Company (or any of its subsidiaries or any Enterprise) and Indemnitee.

 

Section 2.                                            Definitions .

 

As used in this Agreement:

 

(a)                                  [“ Change in Control ” shall mean (i) the sale of all or substantially all of the assets of the Company on a consolidated basis to an unrelated person or entity, (ii) a merger, reorganization or consolidation pursuant to which the holders of the Company’s outstanding voting power and outstanding stock immediately prior to such transaction do not own a majority of the outstanding voting power and outstanding stock or other equity interests of the resulting or successor entity (or its ultimate parent, if applicable) immediately upon completion of such transaction, (iii) the sale of all of the Stock of the Company to an unrelated person, entity or group thereof acting in concert, or (iv) any other transaction in which the owners of the Company’s outstanding voting power immediately prior to such transaction do not own at least a majority of the outstanding voting power of the Company or any successor entity immediately upon completion of the transaction other than as a result of the acquisition of securities directly from the Company.](2)

 

(b)                                  Corporate Status ” describes the status of a person as a current or former [director or] officer of the Company or current or former director, manager, partner, officer, employee, agent or trustee of any other Enterprise which such person is or was serving at the request of the Company.

 

(c)                                   Enforcement Expenses ” shall include all reasonable attorneys’ fees, court costs, transcript costs, fees of experts, travel expenses, duplicating costs, printing and binding costs, telephone charges, postage, delivery service fees, and all other out-of-pocket disbursements or expenses of the types customarily incurred in connection with an action to enforce indemnification or advancement rights, or an appeal from such action.  Expenses, however, shall not include fees, salaries, wages or benefits owed to Indemnitee.

 

(d)                                  Enterprise ” shall mean any corporation (other than the Company), partnership, joint venture, trust, employee benefit plan, limited liability company, or other legal entity of which Indemnitee is or was serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee.

 

(e)                                   Expenses ” shall include all reasonable attorneys’ fees, court costs, transcript costs, fees of experts, travel expenses, duplicating costs, printing and binding costs, telephone charges, postage, delivery service fees, and all other out-of-pocket disbursements or expenses of the types customarily incurred in connection with prosecuting, defending, preparing

 


(2)  For CEO Director version only

 

2



 

to prosecute or defend, investigating, being or preparing to be a witness in, or otherwise participating in, a Proceeding or an appeal resulting from a Proceeding.  Expenses, however, shall not include amounts paid in settlement by Indemnitee, the amount of judgments or fines against Indemnitee or fees, salaries, wages or benefits owed to Indemnitee.

 

(f)                                    Independent Counsel ” means a law firm, or a partner (or, if applicable, member or shareholder) of such a law firm, that is experienced in matters of Delaware corporation law and neither presently is, nor in the past five (5) years has been, retained to represent: (i) the Company, any subsidiary of the Company, any Enterprise or Indemnitee in any matter material to any such party; or (ii) any other party to the Proceeding giving rise to a claim for indemnification hereunder.  Notwithstanding the foregoing, the term “Independent Counsel” shall not include any person who, under the applicable standards of professional conduct then prevailing, would have a conflict of interest in representing either the Company or Indemnitee in an action to determine Indemnitee’s rights under this Agreement.  The Company agrees to pay the reasonable fees and expenses of the Independent Counsel referred to above and to fully indemnify such counsel against any and all expenses, claims, liabilities and damages arising out of or relating to this Agreement or its engagement pursuant hereto.

 

(g)                                   The term “ Proceeding ” shall include any threatened, pending or completed action, suit, arbitration, alternate dispute resolution mechanism, investigation, inquiry, administrative hearing or any other actual, threatened or completed proceeding, whether brought in the right of the Company or otherwise and whether of a civil, criminal, administrative, regulatory or investigative nature, and whether formal or informal, in which Indemnitee was, is or will be involved as a party or otherwise by reason of the fact that Indemnitee is or was [a director or] an officer of the Company or is or was serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee of any Enterprise or by reason of any action taken by Indemnitee or of any action taken on his or her part while acting as [a director or] an officer of the Company or while serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee of any Enterprise, in each case whether or not serving in such capacity at the time any liability or expense is incurred for which indemnification, reimbursement or advancement of expenses can be provided under this Agreement; provided , however , that the term “Proceeding” shall not include any action, suit or arbitration, or part thereof, initiated by Indemnitee to enforce Indemnitee’s rights under this Agreement as provided for in Section 12(a) of this Agreement.

 

Section 3.                                            Indemnity in Third-Party Proceedings .  The Company shall indemnify Indemnitee to the extent set forth in this Section 3 if Indemnitee is, or is threatened to be made, a party to or a participant in any Proceeding, other than a Proceeding by or in the right of the Company to procure a judgment in its favor.  Pursuant to this Section 3, Indemnitee shall be indemnified against all Expenses, judgments, fines, penalties, excise taxes, and amounts paid in settlement actually and reasonably incurred by Indemnitee or on his or her behalf in connection with such Proceeding or any claim, issue or matter therein, if Indemnitee acted in good faith and in a manner he or she reasonably believed to be in or not opposed to the best interests of the Company and, in the case of a criminal proceeding, had no reasonable cause to believe that his or her conduct was unlawful.

 

3



 

Section 4.                                            Indemnity in Proceedings by or in the Right of the Company .  The Company shall indemnify Indemnitee to the extent set forth in this Section 4 if Indemnitee is, or is threatened to be made, a party to or a participant in any Proceeding by or in the right of the Company to procure a judgment in its favor.  Pursuant to this Section 4, Indemnitee shall be indemnified against all Expenses actually and reasonably incurred by Indemnitee or on his or her behalf in connection with such Proceeding or any claim, issue or matter therein, if Indemnitee acted in good faith and in a manner he or she reasonably believed to be in or not opposed to the best interests of the Company.  No indemnification for Expenses shall be made under this Section 4 in respect of any claim, issue or matter as to which Indemnitee shall have been finally adjudged by a court to be liable to the Company, unless and only to the extent that the Delaware Court of Chancery (the “ Delaware Court ”) shall determine upon application that, despite the adjudication of liability but in view of all the circumstances of the case, Indemnitee is fairly and reasonably entitled to indemnification for such expenses as the Delaware Court shall deem proper.

 

Section 5.                                            Indemnification for Expenses of a Party Who is Wholly or Partly Successful .  Notwithstanding any other provisions of this Agreement and except as provided in Section 7, to the extent that Indemnitee is a party to or a participant in any Proceeding and is successful in such Proceeding or in defense of any claim, issue or matter therein, the Company shall indemnify Indemnitee against all Expenses actually and reasonably incurred by him or her in connection therewith.  If Indemnitee is not wholly successful in such Proceeding but is successful as to one or more but less than all claims, issues or matters in such Proceeding, the Company shall indemnify Indemnitee against all Expenses actually and reasonably incurred by Indemnitee or on his or her behalf in connection with each successfully resolved claim, issue or matter.  For purposes of this Section and without limitation, the termination of any claim, issue or matter in such a Proceeding by dismissal, with or without prejudice, shall be deemed to be a successful result as to such claim, issue or matter.

 

Section 6.                                            Reimbursement for Expenses of a Witness or in Response to a Subpoena .  Notwithstanding any other provision of this Agreement, to the extent that Indemnitee, by reason of his or her Corporate Status, (i) is a witness in any Proceeding to which Indemnitee is not a party and is not threatened to be made a party or (ii) receives a subpoena with respect to any Proceeding to which Indemnitee is not a party and is not threatened to be made a party, the Company shall reimburse Indemnitee for all Expenses actually and reasonably incurred by him or her or on his or her behalf in connection therewith.

 

Section 7.                                            Exclusions .  Notwithstanding any provision in this Agreement to the contrary, the Company shall not be obligated under this Agreement:

 

(a)                                  to indemnify for amounts otherwise indemnifiable hereunder (or for which advancement is provided hereunder) if and to the extent that Indemnitee has otherwise actually received such amounts under any insurance policy, contract, agreement or otherwise;

 

(b)                                  to indemnify for an accounting of profits made from the purchase and sale (or sale and purchase) by Indemnitee of securities of the Company within the meaning of Section 16(b) of the Securities Exchange Act of 1934, as amended, or similar provisions of state statutory law or common law;

 

4



 

(c)                                   to indemnify for any reimbursement of, or payment to, the Company by Indemnitee of any bonus or other incentive-based or equity-based compensation or of any profits realized by Indemnitee from the sale of securities of the Company pursuant to Section 304 of SOX or any formal policy of the Company adopted by the Board (or a committee thereof), or any other remuneration paid to Indemnitee if it shall be determined by a final judgment or other final adjudication that such remuneration was in violation of law;

 

(d)                                  to indemnify with respect to any Proceeding, or part thereof, brought by Indemnitee against the Company, any legal entity which it controls, any director or officer thereof or any third party, unless (i) the Board has consented to the initiation of such Proceeding or part thereof and (ii) the Company provides the indemnification, in its sole discretion, pursuant to the powers vested in the Company under applicable law; provided , however , that this Section 7(d) shall not apply to (A) counterclaims or affirmative defenses asserted by Indemnitee in an action brought against Indemnitee or (B) any action brought by Indemnitee for indemnification or advancement from the Company under this Agreement or under any directors’ and officers’ liability insurance policies maintained by the Company in the suit for which indemnification or advancement is being sought as described in Section 12; or

 

(e)                                   to provide any indemnification or advancement of expenses that is prohibited by applicable law (as such law exists at the time payment would otherwise be required pursuant to this Agreement).

 

Section 8.                                            Advancement of Expenses .  Subject to Section 9(b), the Company shall advance, to the extent not prohibited by law, the Expenses incurred by Indemnitee in connection with any Proceeding, and such advancement shall be made within thirty (30) days after the receipt by the Company of a statement or statements requesting such advances (including any invoices received by Indemnitee, which such invoices may be redacted as necessary to avoid the waiver of any privilege accorded by applicable law) from time to time, whether prior to or after final disposition of any Proceeding.  Advances shall be unsecured and interest free.  Advances shall be made without regard to Indemnitee’s ability to repay the expenses and without regard to Indemnitee’s ultimate entitlement to indemnification under the other provisions of this Agreement.  Indemnitee shall qualify for advances upon the execution and delivery to the Company of this Agreement which shall constitute an undertaking providing that Indemnitee undertakes to the fullest extent required by law to repay the advance if and to the extent that it is ultimately determined by a court of competent jurisdiction in a final judgment, not subject to appeal, that Indemnitee is not entitled to be indemnified by the Company.  The right to advances under this paragraph shall in all events continue until final disposition of any Proceeding, including any appeal therein.  Nothing in this Section 8 shall limit Indemnitee’s right to advancement pursuant to Section 12(e) of this Agreement.

 

Section 9.                                          Procedure for Notification and Defense of Claim .

 

(a)                                  To obtain indemnification under this Agreement, Indemnitee shall submit to the Company a written request therefor specifying the basis for the claim, the amounts for which Indemnitee is seeking payment under this Agreement, and all documentation related thereto as reasonably requested by the Company.

 

5



 

(b)                                  In the event that the Company shall be obligated hereunder to provide indemnification for or make any advancement of Expenses with respect to any Proceeding, the Company shall be entitled to assume the defense of such Proceeding, or any claim, issue or matter therein, with counsel approved by Indemnitee (which approval shall not be unreasonably withheld or delayed) upon the delivery to Indemnitee of written notice of the Company’s election to do so.  After delivery of such notice, approval of such counsel by Indemnitee and the retention of such counsel by the Company, the Company will not be liable to Indemnitee under this Agreement for any fees or expenses of separate counsel subsequently employed by or on behalf of Indemnitee with respect to the same Proceeding; provided that (i) Indemnitee shall have the right to employ separate counsel in any such Proceeding at Indemnitee’s expense and (ii) if (A) the employment of separate counsel by Indemnitee has been previously authorized by the Company, (B) Indemnitee shall have reasonably concluded that there may be a conflict of interest between the Company and Indemnitee in the conduct of such defense, or (C) the Company shall not continue to retain such counsel to defend such Proceeding, then the fees and expenses actually and reasonably incurred by Indemnitee with respect to his or her separate counsel shall be Expenses hereunder.

 

(c)                                   In the event that the Company does not assume the defense in a Proceeding pursuant to paragraph (b) above, then the Company will be entitled to participate in the Proceeding at its own expense.

 

(d)                                  The Company shall not be liable to indemnify Indemnitee under this Agreement for any amounts paid in settlement of any Proceeding effected without its prior written consent (which consent shall not be unreasonably withheld or delayed).  The Company shall not, without the prior written consent of Indemnitee (which consent shall not be unreasonably withheld or delayed), enter into any settlement which (i) includes an admission of fault of Indemnitee, any non-monetary remedy imposed on Indemnitee or any monetary damages for which Indemnitee is not wholly and actually indemnified hereunder or (ii) with respect to any Proceeding with respect to which Indemnitee may be or is made a party or may be otherwise entitled to seek indemnification hereunder, does not include the full release of Indemnitee from all liability in respect of such Proceeding.

 

Section 10.                                     Procedure Upon Application for Indemnification .(3)

 

(a)                                  Upon written request by Indemnitee for indemnification pursuant to Section 9(a), a determination, if such determination is required by applicable law, with respect to Indemnitee’s entitlement to indemnification hereunder shall be made in the specific case by one of the following methods: [(x) if a Change in Control shall have occurred and indemnification is being requested by Indemnitee hereunder in his or her capacity as a director of the Company, by Independent Counsel in a written opinion to the Board; or (y) in any other case,] (i) by a majority vote of the disinterested directors, even though less than a quorum; (ii) by a committee of disinterested directors designated by a majority vote of the disinterested directors, even though less than a quorum; or (iii) if there are no disinterested directors or if the disinterested directors so direct, by Independent Counsel in a written opinion to the Board.  For purposes hereof, disinterested directors are those members of the Board who are not parties to the action, suit or

 


(3)  Bracketed portions for CEO Director version only

 

6



 

proceeding in respect of which indemnification is sought.  In the case that such determination is made by Independent Counsel, a copy of Independent Counsel’s written opinion shall be delivered to Indemnitee and, if it is so determined that Indemnitee is entitled to indemnification, payment to Indemnitee shall be made within thirty (30) days after such determination.  Indemnitee shall cooperate with the Independent Counsel or the Company, as applicable, in making such determination with respect to Indemnitee’s entitlement to indemnification, including providing to such counsel or the Company, upon reasonable advance request, any documentation or information which is not privileged or otherwise protected from disclosure and which is reasonably available to Indemnitee and reasonably necessary to such determination.  Any out-of-pocket costs or expenses (including reasonable attorneys’ fees and disbursements) actually and reasonably incurred by Indemnitee in so cooperating with the Independent Counsel or the Company shall be borne by the Company (irrespective of the determination as to Indemnitee’s entitlement to indemnification) and the Company hereby indemnifies and agrees to hold Indemnitee harmless therefrom.

 

(b)                                  If the determination of entitlement to indemnification is to be made by Independent Counsel pursuant to Section 10(a), the Independent Counsel shall be selected by the Board[; provided that, if a Change in Control shall have occurred and indemnification is being requested by Indemnitee hereunder in his or her capacity as a director of the Company, the Independent Counsel shall be selected by Indemnitee].  Indemnitee [or the Company, as the case may be,] may, within ten (10) days after written notice of such selection, deliver to the Company [or Indemnitee, as the case may be,] a written objection to such selection; provided , however , that such objection may be asserted only on the ground that the Independent Counsel so selected does not meet the requirements of “Independent Counsel” as defined in Section 2 of this Agreement, and the objection shall set forth with particularity the factual basis of such assertion.  Absent a proper and timely objection, the person so selected shall act as Independent Counsel.  If such written objection is so made and substantiated, the Independent Counsel so selected may not serve as Independent Counsel unless and until such objection is withdrawn or the Delaware Court has determined that such objection is without merit.  If, within twenty (20) days after the later of (i) submission by Indemnitee of a written request for indemnification pursuant to Section 9(a), and (ii) the final disposition of the Proceeding, including any appeal therein, no Independent Counsel shall have been selected without objection, either Indemnitee or the Company may petition the Delaware Court for resolution of any objection which shall have been made by Indemnitee or the Company to the selection of Independent Counsel and/or for the appointment as Independent Counsel of a person selected by the court or by such other person as the court shall designate.   The person with respect to whom all objections are so resolved or the person so appointed shall act as Independent Counsel under Section 10(a) hereof.  Upon the due commencement of any judicial proceeding or arbitration pursuant to Section 12(a) of this Agreement, Independent Counsel shall be discharged and relieved of any further responsibility in such capacity (subject to the applicable standards of professional conduct then prevailing).

 

Section 11.                                   Presumptions and Effect of Certain Proceedings .

 

(a)                                  To the extent permitted by applicable law, in making a determination with respect to entitlement to indemnification hereunder, it shall be presumed that Indemnitee is entitled to indemnification under this Agreement if Indemnitee has submitted a request for indemnification in accordance with Section 9(a) of this Agreement, and the Company shall have

 

7


 

the burden of proof to overcome that presumption in connection with the making of any determination contrary to that presumption.

 

(b)                                  The termination of any Proceeding or of any claim, issue or matter therein, by judgment, order, settlement or conviction, or upon a plea of guilty, nolo contendere or its equivalent, shall not (except as otherwise expressly provided in this Agreement) of itself adversely affect the right of Indemnitee to indemnification or create a presumption that Indemnitee did not act in good faith and in a manner which he or she reasonably believed to be in or not opposed to the best interests of the Company or, with respect to any criminal Proceeding, that Indemnitee had reasonable cause to believe that his or her conduct was unlawful.

 

(c)                                   The knowledge and/or actions, or failure to act, of any director, manager, partner, officer, employee, agent or trustee of the Company, any subsidiary of the Company, or any Enterprise shall not be imputed to Indemnitee for purposes of determining the right to indemnification under this Agreement.

 

Section 12.                                     Remedies of Indemnitee .

 

(a)                                  Subject to Section 12(f), in the event that (i) a determination is made pursuant to Section 10 of this Agreement that Indemnitee is not entitled to indemnification under this Agreement, (ii) advancement of Expenses is not timely made pursuant to Section 8 of this Agreement, (iii) no determination of entitlement to indemnification shall have been made pursuant to Section 10(a) of this Agreement within sixty (60) days after receipt by the Company of the request for indemnification for which a determination is to be made other than by Independent Counsel, (iv) payment of indemnification or reimbursement of expenses is not made pursuant to Section 5 or 6 or the last sentence of Section 10(a) of this Agreement within thirty (30) days after receipt by the Company of a written request therefor (including any invoices received by Indemnitee, which such invoices may be redacted as necessary to avoid the waiver of any privilege accorded by applicable law) or (v) payment of indemnification pursuant to Section 3 or 4 of this Agreement is not made within thirty (30) days after a determination has been made that Indemnitee is entitled to indemnification, Indemnitee shall be entitled to an adjudication by the Delaware Court of his or her entitlement to such indemnification or advancement.  Alternatively, Indemnitee, at his or her option, may seek an award in arbitration to be conducted by a single arbitrator pursuant to the Commercial Arbitration Rules of the American Arbitration Association.  Indemnitee shall commence such proceeding seeking an adjudication or an award in arbitration within 180 days following the date on which Indemnitee first has the right to commence such proceeding pursuant to this Section 12(a); provided , however , that the foregoing time limitation shall not apply in respect of a proceeding brought by Indemnitee to enforce his or her rights under Section 5 of this Agreement.  The Company shall not oppose Indemnitee’s right to seek any such adjudication or award in arbitration.

 

(b)                                  In the event that a determination shall have been made pursuant to Section 10(a) of this Agreement that Indemnitee is not entitled to indemnification, any judicial proceeding or arbitration commenced pursuant to this Section 12 shall be conducted in all respects as a de novo trial, or arbitration, on the merits and Indemnitee shall not be prejudiced by reason of that adverse determination.  In any judicial proceeding or arbitration commenced

 

8



 

pursuant to this Section 12, the Company shall have the burden of proving Indemnitee is not entitled to indemnification or advancement, as the case may be.

 

(c)                                   If a determination shall have been made pursuant to Section 10(a) of this Agreement that Indemnitee is entitled to indemnification, the Company shall be bound by such determination in any judicial proceeding or arbitration commenced pursuant to this Section 12, absent (i) a misstatement by Indemnitee of a material fact, or an omission of a material fact necessary to make Indemnitee’s statement not materially misleading, in connection with the request for indemnification, or (ii) a prohibition of such indemnification under applicable law.

 

(d)                                  The Company shall be precluded from asserting in any judicial proceeding or arbitration commenced pursuant to this Section 12 that the procedures and presumptions of this Agreement are not valid, binding and enforceable and shall stipulate in any such court or before any such arbitrator that the Company is bound by all the provisions of this Agreement.

 

(e)                                   The Company shall indemnify Indemnitee to the fullest extent permitted by law against any and all Enforcement Expenses and, if requested by Indemnitee, shall (within thirty (30) days after receipt by the Company of a written request therefor) advance, to the extent not prohibited by law, such Enforcement Expenses to Indemnitee, which are incurred by Indemnitee in connection with any action brought by Indemnitee for indemnification or advancement from the Company under this Agreement or under any directors’ and officers’ liability insurance policies maintained by the Company in the suit for which indemnification or advancement is being sought.  Such written request for advancement shall include invoices received by Indemnitee in connection with such Enforcement Expenses but, in the case of invoices in connection with legal services, any references to legal work performed or to expenditures made that would cause Indemnitee to waive any privilege accorded by applicable law need not be included with the invoice.

 

(f)                                    Notwithstanding anything in this Agreement to the contrary, no determination as to entitlement to indemnification under this Agreement shall be required to be made prior to the final disposition of the Proceeding, including any appeal therein.

 

Section 13.                                   Non-exclusivity; Survival of Rights; Insurance; Subrogation .

 

(a)                                  The rights of indemnification and to receive advancement as provided by this Agreement shall not be deemed exclusive of any other rights to which Indemnitee may at any time be entitled under applicable law, the Charter, the Bylaws, any agreement, a vote of stockholders or a resolution of directors, or otherwise.  No amendment, alteration or repeal of this Agreement or of any provision hereof shall limit or restrict any right of Indemnitee under this Agreement in respect of any action taken or omitted by such Indemnitee in his or her Corporate Status prior to such amendment, alteration or repeal.  To the extent that a change in Delaware law, whether by statute or judicial decision, permits greater indemnification or advancement than would be afforded currently under the Charter, Bylaws and this Agreement, it is the intent of the parties hereto that Indemnitee shall enjoy by this Agreement the greater benefits so afforded by such change.  No right or remedy herein conferred is intended to be exclusive of any other right or remedy, and every other right and remedy shall be cumulative and in addition to every other right and remedy given hereunder or now or hereafter existing at law

 

9



 

or in equity or otherwise.  The assertion or employment of any right or remedy hereunder, or otherwise, shall not prevent the concurrent assertion or employment of any other right or remedy.

 

(b)                                  To the extent that the Company maintains an insurance policy or policies providing liability insurance for directors, managers, partners, officers, employees, agents or trustees of the Company or of any other Enterprise, Indemnitee shall be covered by such policy or policies in accordance with its or their terms to the maximum extent of the coverage available for any such director, manager, partner, officer, employee, agent or trustee under such policy or policies.  If, at the time of the receipt of a notice of a claim pursuant to the terms hereof, the Company has director and officer liability insurance in effect, the Company shall give prompt notice of the commencement of such proceeding to the insurers in accordance with the procedures set forth in the respective policies.

 

(c)                                   In the event of any payment under this Agreement, the Company shall be subrogated to the extent of such payment to all of the rights of recovery of Indemnitee, who shall execute all papers required and take all action necessary to secure such rights, including execution of such documents as are necessary to enable the Company to bring suit to enforce such rights.

 

(d)                                  The Company’s obligation to provide indemnification or advancement hereunder to Indemnitee who is or was serving at the request of the Company as a director, manager, partner, officer, employee, agent or trustee of any other Enterprise shall be reduced by any amount Indemnitee has actually received as indemnification or advancement from such other Enterprise.

 

Section 14.                                     Duration of Agreement .  This Agreement shall continue until and terminate upon the later of: (a) ten (10) years after the date that Indemnitee shall have ceased to serve as [both a director and] an officer of the Company or (b) one (1) year after the final termination of any Proceeding, including any appeal, then pending in respect of which Indemnitee is granted rights of indemnification or advancement hereunder and of any proceeding commenced by Indemnitee pursuant to Section 12 of this Agreement relating thereto.  This Agreement shall be binding upon the Company and its successors and assigns and shall inure to the benefit of Indemnitee and his or her heirs, executors and administrators.  The Company shall require and cause any successor (whether direct or indirect by purchase, merger, consolidation or otherwise) to all, substantially all or a substantial part, of the business and/or assets of the Company, by written agreement in form and substance satisfactory to Indemnitee, expressly to assume and agree to perform this Agreement in the same manner and to the same extent that the Company would be required to perform if no such succession had taken place.

 

Section 15.                                     Severability .  If any provision or provisions of this Agreement shall be held to be invalid, illegal or unenforceable for any reason whatsoever: (a) the validity, legality and enforceability of the remaining provisions of this Agreement (including, without limitation, each portion of any section of this Agreement containing any such provision held to be invalid, illegal or unenforceable, that is not itself invalid, illegal or unenforceable) shall not in any way be affected or impaired thereby and shall remain enforceable to the fullest extent permitted by law; (b) such provision or provisions shall be deemed reformed to the extent necessary to conform to applicable law and to give the maximum effect to the intent of the parties hereto; and

 

10



 

(c) to the fullest extent possible, the provisions of this Agreement (including, without limitation, each portion of any section of this Agreement containing any such provision held to be invalid, illegal or unenforceable, that is not itself invalid, illegal or unenforceable) shall be construed so as to give effect to the intent manifested thereby.

 

Section 16.                                     Enforcement .

 

(a)                                  The Company expressly confirms and agrees that it has entered into this Agreement and assumed the obligations imposed on it hereby in order to induce Indemnitee to serve or continue to serve as [a director and] an officer of the Company, and the Company acknowledges that Indemnitee is relying upon this Agreement in serving as [a director and] an officer of the Company.

 

(b)                                  This Agreement constitutes the entire agreement between the parties hereto with respect to the subject matter hereof and supersedes all prior agreements and understandings, oral, written and implied, between the parties hereto with respect to the subject matter hereof; provided , however , that this Agreement is a supplement to and in furtherance of the Charter, the Bylaws and applicable law, and shall not be deemed a substitute therefor, nor to diminish or abrogate any rights of Indemnitee thereunder.

 

Section 17.                                     Modification and Waiver .  No supplement, modification or amendment, or waiver of any provision, of this Agreement shall be binding unless executed in writing by the parties thereto.  No waiver of any of the provisions of this Agreement shall be deemed or shall constitute a waiver of any other provisions of this Agreement nor shall any waiver constitute a continuing waiver.  No supplement, modification or amendment of this Agreement or of any provision hereof shall limit or restrict any right of Indemnitee under this Agreement in respect of any action taken or omitted by such Indemnitee prior to such supplement, modification or amendment.

 

Section 18.                                     Notice by Indemnitee .  Indemnitee agrees promptly to notify the Company in writing upon being served with any summons, citation, subpoena, complaint, indictment, information or other document relating to any Proceeding or matter which may be subject to indemnification, reimbursement or advancement as provided hereunder.  The failure of Indemnitee to so notify the Company shall not relieve the Company of any obligation which it may have to Indemnitee under this Agreement or otherwise.

 

Section 19.                                     Notices .  All notices, requests, demands and other communications under this Agreement shall be in writing and shall be deemed to have been duly given if (i) delivered by hand and receipted for by the party to whom said notice or other communication shall have been directed, (ii) mailed by certified or registered mail with postage prepaid, on the third business day after the date on which it is so mailed, (iii) mailed by reputable overnight courier and receipted for by the party to whom said notice or other communication shall have been directed or (iv) sent by facsimile transmission, with receipt of oral confirmation that such transmission has been received:

 

(a)                                  If to Indemnitee, at such address as Indemnitee shall provide to the Company.

 

11



 

(b)                                  If to the Company to:

 

Ra Pharmaceuticals , Inc.

87 Cambridge Park Drive

Cambridge, MA 02140

Attention: Douglas A. Treco

 

or to any other address as may have been furnished to Indemnitee by the Company.

 

Section 20.                                     Contribution .  To the fullest extent permissible under applicable law, if the indemnification provided for in this Agreement is unavailable to Indemnitee for any reason whatsoever, the Company, in lieu of indemnifying Indemnitee, shall contribute to the amount incurred by Indemnitee, whether for judgments, fines, penalties, excise taxes, amounts paid or to be paid in settlement and/or for Expenses, in connection with any Proceeding in such proportion as is deemed fair and reasonable in light of all of the circumstances in order to reflect (i) the relative benefits received by the Company and Indemnitee in connection with the event(s) and/or transaction(s) giving rise to such Proceeding; and/or (ii) the relative fault of the Company (and its directors, officers, employees and agents) and Indemnitee in connection with such event(s) and/or transactions.

 

Section 21.                                     Internal Revenue Code Section 409A .  The Company intends for this Agreement to comply with the Indemnification exception under Section 1.409A-1(b)(10) of the regulations promulgated under the Internal Revenue Code of 1986, as amended (the “ Code ”), which provides that indemnification of, or the purchase of an insurance policy providing for payments of, all or part of the expenses incurred or damages paid or payable by Indemnitee with respect to a bona fide claim against Indemnitee or the Company do not provide for a deferral of compensation, subject to Section 409A of the Code, where such claim is based on actions or failures to act by Indemnitee in his or her capacity as a service provider of the Company.  The parties intend that this Agreement be interpreted and construed with such intent.

 

Section 22.                                     Applicable Law and Consent to Jurisdiction .  This Agreement and the legal relations among the parties shall be governed by, and construed and enforced in accordance with, the laws of the State of Delaware, without regard to its conflict of laws rules.  Except with respect to any arbitration commenced by Indemnitee pursuant to Section 12(a) of this Agreement, the Company and Indemnitee hereby irrevocably and unconditionally (i) agree that any action or proceeding arising out of or in connection with this Agreement shall be brought only in the Delaware Court, and not in any other state or federal court in the United States of America or any court in any other country, (ii) consent to submit to the exclusive jurisdiction of the Delaware Court for purposes of any action or proceeding arising out of or in connection with this Agreement, (iii) consent to service of process at the address set forth in Section 19 of this Agreement with the same legal force and validity as if served upon such party personally within the State of Delaware, (iv) waive any objection to the laying of venue of any such action or proceeding in the Delaware Court, and (v) waive, and agree not to plead or to make, any claim that any such action or proceeding brought in the Delaware Court has been brought in an improper or inconvenient forum.

 

12



 

Section 23.                                     Headings .  The headings of the paragraphs of this Agreement are inserted for convenience only and shall not be deemed to constitute part of this Agreement or to affect the construction thereof.

 

Section 24.                                     Identical Counterparts .  This Agreement may be executed in one or more counterparts, each of which shall for all purposes be deemed to be an original but all of which together shall constitute one and the same Agreement.  Only one such counterpart signed by the party against whom enforceability is sought needs to be produced to evidence the existence of this Agreement.

 

[Remainder of Page Intentionally Left Blank]

 

13



 

IN WITNESS WHEREOF, the parties have caused this Agreement to be signed as of the day and year first above written.

 

 

RA PHARMACEUTICALS, INC.

 

 

 

By:

 

 

 

Name:

 

 

Title:

 

 

 

 

 

 

 

 

[Name of Indemnitee]

 




Exhibit 10.6

 

[ *** ] TEXT OMITTED AND FILED SEPARATELY WITH THE

SECURITIES AND EXCHANGE COMMISSION

CONFIDENTIAL TREATMENT REQUESTED UNDER

17 C.F.R. SECTIONS 200.80(B)(4) AND 240.24B-2

 

Collaboration and License Agreement

 

by and between

 

RA PHARMACEUTICALS, INC.

 

and

 

MERCK SHARP & DOHME CORP.

 

April 1, 2013

 



 

[ *** ] TEXT OMITTED AND FILED SEPARATELY WITH THE

SECURITIES AND EXCHANGE COMMISSION

CONFIDENTIAL TREATMENT REQUESTED UNDER

17 C.F.R. SECTIONS 200.80(B)(4) AND 240.24B-2

 

COLLABORATION AND LICENSE AGREEMENT

 

Table of Contents

 

 

 

Page

 

 

 

1.

Definitions

1

 

 

 

2.

Research Collaboration

8

 

 

 

3.

Research Collaboration Governance

15

 

 

 

4.

Development and Commercialization

17

 

 

 

5.

License Grants

19

 

 

 

6.

Payments and Royalties

21

 

 

 

7.

Intellectual Property

27

 

 

 

8.

Patent Prosecution and Maintenance

28

 

 

 

9.

Patent Enforcement and Defense

29

 

 

 

10.

Confidentiality

31

 

 

 

11.

Warranties; Limitations of Liability; Indemnification

33

 

 

 

12.

Term and Termination

34

 

 

 

13.

General Provisions

40

 



 

[ *** ] TEXT OMITTED AND FILED SEPARATELY WITH THE

SECURITIES AND EXCHANGE COMMISSION

CONFIDENTIAL TREATMENT REQUESTED UNDER

17 C.F.R. SECTIONS 200.80(B)(4) AND 240.24B-2

 

List of Exhibits

 

Exhibit 1.19

General Hit Class of Interest Criteria Applicable to All Initial Program Targets

Exhibit 1.43

General Progressable Lead Class Criteria across all Program Targets

Exhibit 1.48

Patents Within Ra Core Technology as of the Effective Date

Exhibit 2.1(b)

High Level Research Operating Plan

Exhibit 3.2(a)

Form of Confidentiality Commitment Letter

Exhibit 6.2(a)(iii)

Ra FTE Report

Exhibit 6.5(a)

Wire Transfer Instructions

Exhibit 10.2(c)

Press Release

Exhibit 13.1

Arbitration Proceedings

 



 

[ *** ] TEXT OMITTED AND FILED SEPARATELY WITH THE

SECURITIES AND EXCHANGE COMMISSION

CONFIDENTIAL TREATMENT REQUESTED UNDER

17 C.F.R. SECTIONS 200.80(B)(4) AND 240.24B-2

 

Collaboration and License Agreement

 

This Collaboration and License Agreement (this “ Agreement ”), dated as of April 1, 2013 (the “ Effective Date ”), is made by and between Ra Pharmaceuticals, Inc., a Delaware corporation (“ Ra ”) and Merck Sharp & Dohme Corp., a New Jersey corporation (“ Merck ”).

 

WHEREAS, Ra possesses a proprietary platform, known as Extreme Diversity™, that may be used to identify small, cyclic, peptide-like polymers (“ Cyclomimetics™ ”) as drug candidates; and

 

WHEREAS, Merck possesses certain protein targets and is interested in working with Ra to identify, develop and commercialize Cyclomimetics™ against such protein targets.

 

NOW, THEREFORE, in consideration of the mutual covenants contained herein, and for other good and valuable consideration, the amount and sufficiency of which are hereby acknowledged, the parties hereby agree as follows:

 

1.                                       Definitions.

 

The following capitalized terms as used in this Agreement, whether in the singular or plural, will have their respective meanings as set forth below:

 

1.1                                Affiliate ” means with respect to a party any entity which (directly or indirectly) is controlled by, controls, or is under common control with, such party.  For the purposes of this definition, the terms “ control ” and “ controlled ” mean the direct or indirect ownership of more than fifty percent (50%) of the outstanding voting securities of an entity, or such other relationship as results in actual control over the management, assets, business and affairs of such entity.

 

1.2                                Change of Control ” means with respect to a party: (1) the sale of all or substantially all of such party’s assets or business relating to this Agreement; (2) a merger, reorganization or consolidation involving such party in which the voting securities of such party outstanding immediately prior thereto cease to represent at least fifty percent (50%) of the combined voting power of the surviving entity immediately after such merger, reorganization or consolidation; or (3) a person or entity, or group of persons or entities, acting in concert acquire more than fifty percent (50%) of the voting equity securities or management control of such party; provided, however, that in every case, a Change of Control shall not include any transactions or series of transactions principally made for bona fide equity or debt financing purposes in which cash is received by such party or indebtedness of such party is cancelled or converted or a combination thereof.

 

1.3                                Collaboration Leads ” means the individuals appointed by each of Merck and Ra pursuant to Section 3.1 to coordinate the Research Collaboration.

 

1.4                                Commercialize ” or “ Commercialization ” means activities related to the import, export, marketing, detailing, promotion, distribution or sale of a pharmaceutical product in a country or region in the Territory pursuant to and accordance with the Regulatory Approval for such product in such country or region, or to have any of the foregoing activities performed.

 

1.5                                Commercially Reasonable Efforts ” means that the level of efforts to be expended by a party under this Agreement with respect to the Development, Manufacture or Commercialization of Compounds and Products will be consistent with the level of reasonable, diligent, good faith efforts and resources that would normally be used by such party (whether acting alone or through its Affiliates) for a pharmaceutical product owned by such party (or to which such party otherwise has rights) of similar commercial potential at a similar stage in its lifecycle, and taking into account issues of [ *** ] and other relevant scientific,

 



 

[ *** ] TEXT OMITTED AND FILED SEPARATELY WITH THE

SECURITIES AND EXCHANGE COMMISSION

CONFIDENTIAL TREATMENT REQUESTED UNDER

17 C.F.R. SECTIONS 200.80(B)(4) AND 240.24B-2

 

technical and commercial factors.  Commercially Reasonable Efforts will be determined [ *** ], and it is acknowledged and understood that the level of efforts will be different for different markets and will change over time.

 

1.6                                Compounds ” means, [ *** ]

 

1.7                                Confidential Information ” means proprietary or confidential data, information or Know-How, and Materials, of whatever kind and in whatever form or medium, that is disclosed by or on behalf of a party to the other party during the Term, including any of the foregoing of Third Parties.  Without limiting the foregoing, (i) Ra Background IP, Ra Program IP and Ra Core Technology will be considered Confidential Information of Ra (other than Joint Program IP), (ii) Merck Background IP and Merck Program IP (other than Joint Program IP) will be considered Confidential Information of Merck, and Joint Program IP will be considered Confidential Information of both parties.

 

1.8                                Control ” or “ Controlled ” means, with respect to any Know-How, Materials, Patents, or other intellectual property or rights, the possession (whether by ownership or license or other right, other than by a license or other right granted pursuant to this Agreement) by a party of the ability to grant (or to ensure that its Affiliates grant) to the other party the licenses, sublicenses, or rights to access and use, such Know-How, Materials, Patents, or other intellectual property or rights, as provided for herein without requiring the payment of any royalties or other consideration or violating the terms of any agreement or other arrangement with any Third Party in existence as of the time such party or its Affiliates would be required hereunder to grant such license, sublicense, or rights of access and use.

 

1.9                                Covers ” means, with reference to a Patent, that the performance of one or more activities related to the Development, Manufacture or Commercialization of a Compound or Product (or the use of any Materials in connection therewith) would infringe at least one claim of such Patent in the country(ies) in which such activities occur.

 

1.10                         Develop ” or “ Development ” means to engage in research and development activities intended to research, discover or develop Compounds or to support INDs, NDAs or other Regulatory Approvals for Products, including, (i) development of any applicable active drug substances, (ii) toxicology, preclinical and clinical drug development activities, (iii) clinical trials (except for Phase IV Studies), (iv) assay/test method development, validation and stability testing, (v) formulation development, (vi) manufacture of pre-clinical and clinical supplies, and manufacturing process development, scale-up and validation, (vii) quality assurance/quality control, statistical analysis, and regulatory affairs (including the preparation, submission and maintenance of all INDs and NDAs for the Products), and (viii) to have any of the foregoing activities performed.

 

1.11                         EMA ” means the European Medicines Agency and any successor agency thereto.

 

1.12                         EU ” means the organization of member states of the European Union, including as it may be constituted from time to time.

 

1.13                         FDA ” means the United States Food and Drug Administration and any successor agency thereto.

 

1.14                         Field ” means [ *** ]

 

2



 

[ *** ] TEXT OMITTED AND FILED SEPARATELY WITH THE

SECURITIES AND EXCHANGE COMMISSION

CONFIDENTIAL TREATMENT REQUESTED UNDER

17 C.F.R. SECTIONS 200.80(B)(4) AND 240.24B-2

 

1.15                         First Commercial Sale ” means, with respect to a given Product in a given country or region in the Territory, as applicable, the first sale by Merck (or its Affiliate or Sublicensee) to a Third Party on arm’s length terms for use or consumption of such Product in such country or region in the Territory after a Regulatory Approval for such Product has been obtained in such country or region.  Notwithstanding the foregoing, sales for test marketing, sampling and promotional uses, clinical trial purposes or compassionate or similar use will not be considered to constitute a First Commercial Sale.  For clarity, First Commercial Sale will be determined on a Product-by-Product and country-by-country (or region-by-region) basis, as applicable.

 

1.16                         FTE Rate ” means an amount equal to [ *** ] U.S. dollars (U.S. [ *** ]) for one (1) full FTE, which represents the fully burdened rate for each such FTE and includes related salary, benefits, administration, facilities costs and overhead.

 

1.17                         FTE ” means the equivalent of a full-time scientist’s work time over a period of twelve (12) consecutive calendar months (including normal vacation, holiday, and sick days).  The portion of an FTE year devoted by a scientist to the Research Collaboration will be determined by dividing (i) the number of full days during any given twelve (12) month period that such individual devoted to performance of the Research Collaboration by (ii) the total number of working days during such twelve (12) month period.

 

1.18                         Good Laboratory Practice ” or “ GLP s” means the applicable then-current standards for laboratory activities for pharmaceuticals or biologicals, as applicable, as set forth in the United States Federal Food, Drug and Cosmetic Act, 21 U.S.C. §§ 301 et seq., and any regulations or guidance documents promulgated thereunder (as amended), together with any similar standards of good laboratory practice as are required by any Regulatory Authority in the Territory, as applicable.

 

1.19                         Hit Class of Interest ” means, on a Program Target-by-Program Target basis, a class of compounds for such Program Target that demonstrates all of the following criteria: (i) [ *** ]; (ii) [ *** ]; (iii) [ *** ]; (iv) [ *** ]; and (v) [ *** ], in each case as further added and agreed to by the parties in accordance with Section 2.1(d) (all such criteria, the “ Hit Class of Interest Criteria ” for such Program Target).  The general Hit Class of Interest Criteria applicable to all of the initial Program Targets named as of the Effective Date are attached hereto as Exhibit 1.19 .  The specific Hit Class of Interest Criteria for each of the initial Program Targets will be determined by the JSC [ *** ].

 

1.20                         IND ” means an Investigational New Drug application, Clinical Study Application, Clinical Trial Exemption, or similar application or submission for approval to conduct human clinical investigations filed with or submitted to a Regulatory Authority in conformance with the requirements of such Regulatory Authority.

 

1.21                         Joint Patents ” means any Patents in the Territory which are jointly owned by Merck and Ra or any of their respective affiliates.

 

1.22                         JSC ” means the Joint Steering Committee established by the parties pursuant to Section 3.2(a).

 

1.23                         Know-How ” means proprietary commercial, technical, scientific and other data, information, results, inventions, discoveries, improvements, trade secrets, knowledge, technology, methods, processes, formulae, compositions of matter (including Compounds), instructions, techniques, designs, drawings and specifications (including biological, chemical, pharmacological, toxicological, pharmaceutical, physical and analytical, preclinical, clinical, safety, manufacturing and quality control data and know-how, including study designs and protocols) that is related to Compounds, Materials, Products or the Development, Manufacture, Commercialization or use thereof, or any Program Targets.

 

3



 

[ *** ] TEXT OMITTED AND FILED SEPARATELY WITH THE

SECURITIES AND EXCHANGE COMMISSION

CONFIDENTIAL TREATMENT REQUESTED UNDER

17 C.F.R. SECTIONS 200.80(B)(4) AND 240.24B-2

 

1.24                         Manufacture ” or “ Manufacturing ” means activities related to the manufacture, formulation and packaging of Compounds or Products, including related quality control and quality assurance activities.  For clarity, the Manufacture of pre-clinical and clinical supplies and Manufacturing activities related to process development and scale up work conducted prior to successful commercial scale validation batches will also be considered part of Development.

 

1.25                         Materials ” means any tangible chemical or biological research materials that are provided or otherwise made available by one party to the other party under the terms of Section 2.2(d) for use in performance of (i) the Research Collaboration or (ii) the performance of Development activities by or on behalf of Merck hereunder, including, in each case, samples of [ *** ], together with any components, derivatives or progeny thereof.

 

1.26                         Merck Background Know-How ” means Know-How that is Controlled by Merck or any of its Affiliates during the Research Term that (i) is necessary or reasonably useful for research related to any Program Targets, (ii) Merck chooses to make available under this Agreement, or (iii) is required for Ra to perform its obligations under the Research Collaboration.

 

1.27                         Merck Background IP ” means the Merck Background Know-How and the Merck Background Patents.

 

1.28                         Merck Background Patents ” means Patents that are Controlled by Merck or any of its Affiliates during the Research Term that (i) are [ *** ] for research related to any Program Targets, (ii) Merck chooses to make available under this Agreement, or (iii) are required for Ra to perform its obligations under the Research Collaboration.

 

1.29                         Merck IP ” means the [ *** ].

 

1.30                         Merck Patents ” means any and all Patents in the Territory which are owned or Controlled by Merck or any of its Affiliates.

 

1.31                         Merck Program IP ” means ([ *** ].

 

1.32                         NDA ” means a New Drug Application filed with the FDA (including amendments and supplements thereto) to obtain Regulatory Approval in the U.S., or any corresponding applications or submissions filed with the relevant Regulatory Authorities to obtain Regulatory Approvals in any other country or region in the Territory.

 

1.33                         Net Sales ” means the gross amount invoiced (not including value added taxes, sales taxes, or similar taxes) for Product that is sold by Merck or its Affiliates or Sublicensees in the Territory to the first independent Third Party after deducting, if not previously deducted, from such amount the actual amounts for:

 

[ *** ]

 

4



 

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wherein Net Sales shall be determined as Merck determines Net Sales with respect to sales of its other drug products, including Product, and for the sake of clarity, where any charge or allowance as described above in this Section 1.33 shall be counted once only.

 

[ *** ] .  Inventory cost shall be determined in accordance with Merck’s regular accounting methods, consistently applied.  The deductions set forth in Sections 1.33(a)-(g) will be applied in calculating Net Sales for a Combination Product.  [ *** ].

 

1.34                         Patents ” means patents and patent applications in the Territory (which for purposes of this Agreement will include certificates of invention and applications for such certificates), including any divisionals, continuations, continuations-in-part, substitutions, reissues, re-examinations, revalidations, patent term extensions, pediatric exclusivity extensions, registrations, supplementary protection certificates and renewals of any such patents or patent applications, together with foreign equivalents of any of the foregoing, that claim or cover any Compounds, Materials or Products, or Development, Manufacture, Commercialization or use thereof, or any Program Targets.

 

1.35                         Patent Costs ” means the documented out-of-pocket costs and expenses incurred for the Prosecution of Patents in the Territory, including the reasonable costs of outside Patent counsel or agents.

 

1.36                         Phase I Study ” means a human clinical trial in any country that would satisfy the requirements of 21 C.F.R. 312.21(a) (as amended) (whether or not such trial is for the FDA), but which is not a Phase II Study, Phase III Study or Phase IV Study.

 

1.37                         Phase II Study ” means a human clinical trial in any country that would satisfy the requirements of 21 C.F.R. 312.21(b) (as amended) (whether or not such trial is for the FDA), but which is not a Phase III Study or Phase IV Study.

 

1.38                         Phase III Study ” means a large scale human clinical trial in any country that would satisfy the requirements of 21 C.F.R. 312.21(c) (as amended) (whether or not such trial is for the FDA), but which is not a Phase IV Study.

 

1.39                         Phase IV Study ” means a clinical study or data collection effort for a Product that is initiated in one or more countries after the receipt of Regulatory Approval in such country(ies) and is principally intended to support the Commercialization of such Product in such country/countries and not

 

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to support or maintain the same or any additional Regulatory Approvals or otherwise obtain any labeling change.  Phase IV Studies will include clinical experience trials, but will exclude post-approval studies that are required by a Regulatory Authority as a condition to receiving Regulatory Approval.

 

1.40                         Product ” means any pharmaceutical composition or preparation containing Compound as an active ingredient and that is in final form intended for sale in Territory [ *** ].  For clarity, different dosage forms or dosage strengths of a given Product will be considered the same Product for purposes of this Agreement.

 

1.41                         Program IP ” means Know-How and Materials, plus all Patents arising therefrom, created or conceived in connection with the activities performed pursuant to the Research Collaboration (whether solely by one party or jointly by the parties, in each case optionally with their Affiliates or any licensees, sublicensees, subcontractors or any other Third Parties or any employees, consultants or agents of any of the foregoing).

 

1.42                         Program Target ” means each of the following protein targets, unless otherwise substituted as provided in Section 2.1(c) or becomes a Terminated Target hereunder: [ *** ].

 

1.43                         Progressable Lead Class ” means, on a Program Target-by-Program Target basis, those compounds from a Hit Class of Interest for such Program Target that demonstrate all of the following criteria: (i) [ *** ]; (ii) [ *** ]; (iii) [ *** ]; (iv) [ *** ]; (v) [ *** ]; and (vi) [ *** ], in each case as further added and agreed to by the parties in accordance with Section 2.1(e)(i) (all such criteria, the “ Progressable Lead Class Criteria ” for such Program Target).  The Progressable Lead Class Criteria for each Program Target will include all of the Hit Class of Interest Criteria for such Program Target.  The Progressable Lead Class Criteria for each of the initial Program Targets named as of the Effective Date are attached hereto as Exhibit 1.43 .

 

1.44                         Prosecute ” or “ Prosecution ” means in relation to any Patents, (i) to prepare and file Patent applications, including re-examinations or re-issues thereof, and represent applicants or assignees before relevant patent offices or other relevant governmental authorities during examination, re-examination and re-issue thereof, in appeal processes and interferences, or any equivalent proceedings, (ii) to defend all such applications against Third Party oppositions, (iii) to secure the grant of any Patents arising from such Patent application, (iv) to maintain in force any issued Patent (including through payment of any relevant maintenance fees), and (v) to make all decisions with regard to any of the foregoing activities.

 

1.45                         Ra Background Know-How ” means Know-How Controlled by Ra or any of its Affiliates during the Research Term that is necessary or reasonably useful for (i) research related to any Program Targets, or (ii) Development, Manufacture or Commercialization of Compounds or Products, but excluding Know-How within Ra Core Technology or Ra Program IP.

 

1.46                         Ra Background IP ” means the Ra Background Know-How and the Ra Background Patents.

 

1.47                         Ra Background Patents ” means Patents that are Controlled by Ra or any of its Affiliates during the Research Term that are necessary or reasonably useful for (i) research related to any Program

 

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Targets, or (ii) Development, Manufacture or Commercialization of Compounds or Products, but excluding Patents within Ra Core Technology or Ra Program IP .

 

1.48                         Ra Core Technology ” means Know-How, Patents, other intellectual property and Materials owned or in-licensed by Ra or any of its Affiliates that relate to Ra’s Extreme Diversity™ platform, mRNA Display technology or any libraries or compounds therein (including methods of making and using any of the foregoing).  Exhibit 1.48 lists those Patents that as of the Effective Date are Ra Core Technology and thus not licensed or otherwise made available to Merck hereunder.

 

1.49                         Ra IP ” means the Ra Background IP and the Ra Program IP.

 

1.50                         Ra Patents ” means any and all Patents in the Territory which are Controlled by Ra or any of its Affiliates and are licensed to Merck hereunder.

 

1.51                         Ra Program IP ” means (a) all Program IP that is created, conceived, discovered, developed, invented, reduced to practice and/or otherwise made solely by employees of Ra (or any of its Affiliates) or other persons (not employed by Merck (or any of its Affiliates)) acting on behalf of Ra (or any of its Affiliates); and (b) Ra’s interest in any Joint Program IP; provided that Ra Program IP does not include any Program IP that is owned by Merck pursuant to Section 7.2(b).

 

1.52                         Regulatory Approval ” means, with respect to a country or region in the Territory, approvals, licenses, registrations or authorizations from the relevant Regulatory Authority necessary in order to import, distribute, market and sell a pharmaceutical product in such country or region, but not including any pricing or reimbursement approvals.

 

1.53                         Regulatory Authority ” means the FDA, the EMA, and any other analogous government regulatory authority or agency involved in granting approvals (including any required pricing or reimbursement approvals) for the Development, Manufacture or Commercialization of pharmaceutical products in the Territory.

 

1.54                         Research Collaboration ” means (i) the collaborative program of research, discovery and preclinical Development activities to be conducted by or on behalf of the parties during the Research Term in accordance with the Research Operating Plan, and (ii) other activities that may be undertaken by or on behalf of a party or any of its Affiliates with respect to the Development of Compounds during the Research Term.

 

1.55                         Sublicensee ” means an Affiliate of Merck or a Third Party that is granted a sublicense by Merck in accordance with Section 5.2(b).

 

1.56                         Territory ” means [ *** ].

 

1.57                         Third Party ” means any person or entity other than Ra, Merck and their respective Affiliates.

 

1.58                         United States ” or “ U.S. ” means the United States of America, including its territories and possessions, and the District of Columbia.

 

1.59                         Valid Claim ” means a [ *** ].

 

The following additional defined terms have the meanings set forth in the section indicated:

 

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Defined Term

 

Section

AAA

 

13.1

Competitive Infringement

 

9.1

Defined Compounds and Products

 

12.6(a)(v)(A)(1)

Designated Chemist

 

2.2(e)

Disclosing Party

 

10.1(a)

Excluded Claim

 

13.1

Exclusions Lists

 

2.6(c)(iv)

Exclusive Patent

 

8.1

Exclusive Reversion Patents

 

12.6(a)(viii)

Force Majeure

 

13.15

HL Research Operating Plan

 

2.1(b)

Issuing Party

 

10.2(b)

Joint Program IP

 

7.2(c)(i)

JSC

 

3.2(a)

Liabilities

 

11.5(a)

Merck Indemnitees

 

11.5(b)

mRNA Display

 

2.5(b)

Officials

 

2.6(c)(ii)

Payment

 

2.6(c)(ii)

Ra Indemnitees

 

11.5(a)

Receiving Party

 

10.1(a)

Release

 

10.2(b)

Research Operating Plans

 

2.1(b)

Research Term

 

2.1(a)

Reversion Compound IP

 

12.6(a)(v)(A)(2)

Reviewing Party

 

10.2(b)

Royalty Period

 

6.4(a)

Safety/Efficacy Termination

 

12.2

Senior Research Officers

 

3.3

Sensitive Information

 

13.9(b)(iii)

Sole Program IP

 

7.2(c)(i)

Successor

 

13.9(b)(ii)

Term

 

12.1

Terminated Targets

 

12.2

Violation

 

2.6(c)(iv)

 

2.                                       Research Collaboration.

 

2.1                                Conduct of the Research Collaboration .

 

(a)                                  Purpose and Term .  The parties have agreed to engage in the Research Collaboration on the terms and conditions set forth in this Agreement and as directed by the JSC to identify, research and preclinically Develop one or more Hit Classes of Interest and one or more Progressable Lead Classes against each of the Program Targets as possible Compounds that are suitable for clinical Development and Commercialization by Merck.  The Research Collaboration will be undertaken and performed during the period beginning on the Effective Date and ending on the second (2nd) anniversary of the Effective Date, unless extended or earlier terminated pursuant to this Agreement (the “ Research Term ”).

 

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(b)                                  Research Operating Plans .  The high-level identification, research and preclinical Development activities to be undertaken and performed by the parties in connection with the Research Collaboration are set forth in a high-level Research Operating Plan which will apply to any Program Target under this Agreement (the “ HL Research Operating Plan ”).  During Phase 1 of such HL Research Operating Plan, the parties will jointly develop a more detailed research plan for each Program Target (collectively, the “ Research Operating Plans ”).  Each party will work in accordance with the Research Operating Plans to identify, research and preclinically Develop one or more Hit Classes of Interest and one or more Progressable Lead Classes against each of the Program Targets as possible Compounds.  The JSC will monitor and periodically review and discuss the status and results of work under the Research Operating Plans.  Any material modifications or amendments to the Research Operating Plans that are proposed by either Merck or Ra will be subject to review and prior written approval by the JSC pursuant to and accordance with the terms of Section 3.2.

 

(c)                                   Right to Substitute Program Targets .

 

(i)                                      Subject to the remainder of this Section 2.1(c):

 

(A)                                During or upon completion of Phase 2 of the Research Operating Plan (as defined therein) for a particular Program Target, Merck will have the option to substitute a new Program Target into the Research Collaboration and commence a new Research Operating Plan for the new Program Target.

 

(B)                                If Phase 3 of the Research Operating Plan (as defined therein) for a particular Program Target has not achieved the technical criteria as set forth in the Research Operating Plan for such Phase, prior to entering Phase 4 of the Research Operating Plan (as defined therein) for such particular Program Target, Merck will have the option to substitute a new Program Target into the Research Collaboration and commence a new Research Operating Plan for the new Program Target.

 

1.                                      With respect to the substitutions described in Section 2.1(c)(i)(B) above, the total number of Program Target substitutions for each of the three (3) initial Program Targets will be not more than one (1) for each such initial Program Target, so that in the aggregate for all three (3) initial Program Targets there will be a maximum of three (3) such substitutions, one (1) each for each such initial Program Target.

 

2.                                      In all cases, any such substitution must occur at least six (6) months before the end of the Research Term, and if necessary and subject to continued FTE support from Merck, the Research Term will be extended for such new Program Target for a period of time as agreed by the JSC (but the Research Term as applied to any other Program Target will not be extended absent mutual agreement of the parties). Further, if such new Program Target is Mcl-1, the payment set forth in Section 6.1(b) will be due and payable by Merck to Ra at the time of such substitution.

 

(ii)                                   The nomination by Merck of a new protein target as a new Program Target pursuant to this Section 2.1(c) is subject to (a) Ra's target-by-target exclusivity obligations or there not being an active in-house program in each case at the time of such nomination, (b) the JSC, acting in good faith, agreeing on a Research Operating Plan, Hit Class of Interest Criteria and Progressable Lead Class Criteria for such new Program Target, and (c) the ability of Merck to timely provide any Materials required to perform such Research Operating Plan; if any of the foregoing ((a) through (c)) is not satisfied, then such new protein target so nominated by Merck will not become a new Program Target hereunder. If any such new Program Target is unavailable because such new Program Target is subject to an active in-house program (but not any exclusivity obligations), Ra agrees to discuss with Merck including such new Program Target in this Agreement as a substitute Program Target on revised economic terms, although neither party is required to agree to any such revised economic terms and to include such new Program Target in this Agreement.

 

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(iii)                                Upon substitution of any initial Program Target, (a) the Research Collaboration with respect to such substituted initial Program Target will immediately cease (with all studies under the Research Collaboration to wind-down and cease as soon as practically feasible), (b) this Agreement will be deemed terminated in-part by Merck pursuant to Section 12.2  (but solely with respect to such substituted initial Program Target, and for clarity, the Research Collaboration for any other Program Target hereunder will continue in full force and effect), and (c) such substituted initial Program Target will no longer be a Program Target hereunder and will become a “Terminated Target” as specified in Section 12.2.

 

(d)                                  Selection of Hit Classes of Interest .  The general Hit Class of Interest Criteria agreed to by the parties applicable to all Program Targets will be set forth in Exhibit 1.19 .  The general Hit Class of Interest Criteria may be amended only by the JSC, and it is the intention of the parties that the general Hit Class of Interest Criteria set forth in Exhibit 1.19 will be further refined and established on a Program Target-by-Program Target basis for each of the designated Program Targets as appropriate during Phase 1 of the HL Research Operating Plan so that there are specific Hit Class of Interest Criteria applicable to each such Program Target.  The JSC will periodically review the available data for each Program Target from preclinical Development and may provide recommendations to Merck of Hit Classes of Interest meeting the Hit Class of Interest Criteria for consideration as possible Progressable Lead Classes.  In making such recommendations, the JSC will also take into consideration such other factors as it may deem relevant, including the complexity of chemical synthesis of the Hit Class of Interest, potential issues related to scale-up of the Manufacturing process or the formulation of the Hit Class of Interest, and the extent to which Patent protection may be available for such Hit Class of Interest.  Merck through the JSC will reasonably consider any Hit Classes of Interest recommended by Ra.  Merck will have sole control with regard to the selection and designation of any Hit Classes of Interest for further Development as a Progressable Lead Class.  Merck will promptly notify Ra in writing in the event that a Hit Class of Interest is selected by Merck.

 

(e)                                   Selection of Progressable Lead Classes .

 

(i)                                      The general Progressable Lead Class Criteria agreed to by the parties applicable to all Program Targets will be set forth in Exhibit 1.43 .  The general Progressable Lead Class Criteria may be amended only by the JSC and it is the intention of the parties that the general Progressable Lead Class Criteria set forth in Exhibit 1.43 will be further refined and established on a Program Target-by-Program Target basis for each of the designated Program Targets as appropriate during Phase 1 of the HL Research Operating Plan so that there are specific Progressable Lead Class Criteria applicable to each such Program Target; provided that, subject to Exhibit 1.43 , in all events the binding criteria for such Program Target will be at least 1 uM and the selectivity criteria to relevant protein targets will be at least 10-fold.  The JSC will periodically review the available data from preclinical Development and may provide recommendations to Merck of Progressable Lead Classes meeting the Progressable Lead Class Criteria for consideration as possible Compounds.  In making such recommendations, the JSC will also take into consideration such other factors as it may deem relevant, including the complexity of chemical synthesis of the Progressable Lead Class, potential issues related to scale-up of the Manufacturing process or the formulation of the Progressable Lead Class, and the extent to which Patent protection may be available for such Progressable Lead Class.  Merck will reasonably consider any Progressable Lead Classes recommended by Ra.  Merck will have sole control with regard to the selection and designation of any Progressable Lead Classes for further Development as a Progressable Lead Class, Compound or Product by Merck.  Merck will promptly notify Ra in writing in the event that a Progressable Lead Class is selected by Merck.

 

(ii)                                   If a Progressable Lead Class is not declared for a Program Target by no later than ninety (90) days after the end of the Research Term for such Program Target, (a) this Agreement will be deemed terminated in-part by Merck pursuant to Section 12.2  (but solely with respect to such Program

 

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Target, and for clarity, the Research Collaboration for any other Program Target hereunder will continue in full force and effect), and (b) such Program Target will no longer be a Program Target hereunder and will become a “Terminated Target” as specified in Section 12.2 .

 

(f)                                    Performance of the Research Operating Plans .  Each party will use Commercially Reasonable Efforts to undertake and perform its respective obligations as set forth in the Research Operating Plans using appropriate personnel and resources (but for the work to be performed by Ra under the Research Operating Plans, subject to the extent FTEs are funded pursuant to Section 6.2, it being understood that Ra is not required to perform work not so funded by Merck).  In connection therewith, each party will maintain and utilize sufficient equipment, laboratories, offices and other facilities, and use personnel with sufficient skills and experience, in each case, as are required to accomplish the activities allocated to such party under the Research Operating Plans in accordance with the terms and conditions of this Agreement (subject to Merck’s funding for Ra’s performance), as applicable.  The parties will work together to coordinate their efforts in performing their respective responsibilities under the Research Operating Plans.  Except as expressly set forth in Sections 2.1(g) and 6.2 (or as may otherwise be agreed by the parties in advance and in writing), each of Merck and Ra is and will remain solely responsible for all of the out-of-pocket and internal costs and expenses (including costs of FTEs and any subcontractors used in accordance with Section 2.3) that are incurred by or on its behalf in connection with the performance of the Research Operating Plans for the time that such FTEs are so committed.

 

(g)                                   Direct External Expenses .  During the Research Term, Merck will reimburse Ra for direct external expenses without mark-up related to Program Target activities in categories and amounts agreed to by the parties through the JSC.  Such expenses may include, but may not be limited to, chemistry, DNA chemicals and sequencing, X-ray crystallography, in vitro permeability and metabolism studies, and in vivo studies, including ADME, pharmacokinetics, and pharmacodynamics.  Ra will not be required to incur any external expenses for which Merck will not reimburse Ra.

 

2.2                                Research Collaboration Records, Reports and Materials .

 

(a)                                  Records .  Each party will maintain, or cause to be maintained, records of its activities and results achieved under the Research Operating Plan in sufficient detail and in good scientific manner appropriate for scientific, Patent and regulatory purposes, which will properly reflect all work included in the Research Collaboration.  All such records will be maintained in manner consistent with (i) applicable laws, rules and regulations relating to similar documentation used to obtain and maintain Regulatory Approvals in the U.S. and EU, and (ii) such party’s applicable internal policies and procedures.  Such records will be maintained during the Term of this Agreement and for a period of [ *** ] years thereafter (or such longer period of time as required by applicable laws, rules and regulations relating to similar documentation used to obtain and maintain Regulatory Approvals in the U.S. and EU).

 

(b)                                  Copies and Inspection of Records .  Merck will have the right, during normal business hours and upon reasonable notice at its expense, to inspect and copy all such records of Ra referred to in Section 2.2(a).  To the extent such records contain Confidential Information of Ra, Merck will maintain such Confidential Information disclosed therein in confidence in accordance with Section 10.1.  Merck will have the right to arrange for its employees or consultants involved in the activities contemplated hereunder to visit the offices and laboratories of Ra (and any of its Affiliates) and any of its Third Party contractors during normal business hours and upon reasonable notice, and to discuss the Research Collaboration work and its results in detail with the technical personnel and consultants of Ra.  Upon request, Ra will provide to Merck copies of the records described in Section 2.2(a).

 

(c)                                   Research Collaboration Reports .  During the Research Term, each party will furnish to the JSC a summary written report, within [ *** ] after the end of each calendar quarter during the Research Term, describing the status and progress of its performance under the Research Operating

 

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Plans and any other work conducted by or on its behalf as part of the Research Collaboration, and such other

 

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information with respect to the Research Collaboration that the JSC may reasonably request in connection with the activities under the Research Collaboration.  For clarity, the last such report pursuant to this Section 2.2(c) will be provided within [ *** ] following the end of the Research Term, and will cover the last calendar quarter (or portion thereof, as applicable) during the Research Term .

 

(d)                                  Research Materials .  Subject to Section 2.2(e) below, during the Research Term, each party will, as set forth in the applicable Research Operating Plan or as otherwise elected by a party, provide the other party with samples of Materials and Compounds and Products in such party’s Control that may be [ *** ] for the other party to carry out its responsibilities under the applicable Research Operating Plan.  The party receiving such Materials, Compounds or Products, as applicable, will only use the Materials, Compounds or Products, as applicable, in accordance with the Research Operating Plan (or as may otherwise be permitted under the terms and conditions of this Agreement).  The party receiving such Materials, Compounds or Products, as applicable, will not distribute or otherwise allow the release of Materials, Compounds or Products, as applicable, to any Third Party without the prior written consent of the supplying party ([ *** ], except that Merck may distribute or otherwise release such Materials, Compounds or Products, as applicable, provided by Ra without Ra’s prior written consent to its Affiliates, Sublicensees, agents and subcontractors, and to Regulatory Authorities, for the purpose of carrying out the Development, Manufacturing and Commercialization of Compounds and Products in accordance with the terms hereunder.  Materials, Compounds or Products, as applicable, made available to the receiving party are and will remain the sole property of the supplying party and will be used in compliance with all applicable laws, rules and regulations.  The party supplying such Materials, Compounds or Products, as applicable, will provide the other party together with the Materials, Compounds or Products, as applicable, any available information related to the safe and proper storage and handling thereof.

 

(e)                                   Chemical Structures [ *** ].

 

2.3                                Use of Subcontractors .  Each of Merck and Ra will have the right to utilize the services of its Affiliates or Third Party contractors in connection with the performance of the activities for which it is responsible under the Research Operating Plans; provided, however, that such party will (a) ensure that any such Affiliates and Third Party contractors are obligated to assign all rights, title, and interests in or to any Program IP, and (b) remain responsible under this Agreement for the performance and compliance of such Affiliates and Third Party contractors.  The party utilizing such subcontractors will also ensure that such Affiliate or Third Party is subject to obligations protecting and limiting use and disclosure of Confidential Information, Compounds, Materials and Know-How at least to the same extent as set forth under this Agreement.  The status and results of any such Third Party subcontracting activities will be described in the reports for the Research Collaboration required by Section 2.2(b).

 

2.4                                Target Reversion .  If at any time during the Term, Merck determines that it no longer desires to pursue the further study of a given Program Target for any reason, then Merck will provide written notice thereof to Ra indicating the Program Target, and thereafter, (a) the Research Collaboration with respect to such Program Target will immediately cease (with all studies under the Research Collaboration to wind-down and cease as soon as practically feasible), (b) this Agreement will be deemed terminated in-part by Merck [ *** ]  (but solely with respect to such Program Target, and for clarity, this Agreement for any other Program Target hereunder will continue in full force and effect), and (c) such Program Target will no longer be a Program Target hereunder and will become a “Terminated Target” [ *** ].

 

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2.5                                Exclusivity .

 

(a)                                  Ra Exclusivity .  On a Program Target-by-Program Target basis, during the Term for as long as such Program Target is part of this Agreement, Ra will not either directly or indirectly (including on behalf of a Third Party or by granting rights to a Third Party) Develop any Cyclomimetics™ directed at such Program Target, except to carry out its obligations under the Research Collaboration [ *** ].  At Merck’s further request, Ra will include such information in its regular reports to the JSC for potential further Development under this Agreement.

 

(b)                                  Merck Exclusivity .  On a Program Target-by-Program Target basis, during the Term for as long as such Program Target is part of this Agreement, [ *** ].

 

(c)                                   Relationship to Other Ra Programs .  Notwithstanding anything herein to the contrary, if a compound isolated from any library screened by Ra hereunder [ *** ].  Likewise, subject to the foregoing, if any compound isolated from a library screened by Ra hereunder is included in this Agreement, [ *** ].

 

2.6                                Compliance .

 

(a)                                  General .  Ra and Merck each will conduct the Research Collaboration in compliance with all applicable laws, rules and regulations, including GLPs (as applicable).  Ra and Merck will notify Merck and Ra, respectively, in writing of any deviations from any applicable laws, rules and regulations.

 

(b)                                  Animal Research .  Without limiting the provisions of Section 2.6(a), if animals are used in research hereunder, each party will comply with the Animal Welfare Act and any other applicable local, state, national and international laws and regulations relating to the care and use of laboratory animals.  Merck encourages Ra to use the highest standards, such as those set forth in the Guide for the Care and Use of Laboratory Animals (NRC, 1996), for the humane handling, care and treatment of such research animals.  Any animals which are used in the course of the Research Collaboration, or products derived from those animals, such as eggs or milk, will not be used for food purposes, nor will these animals be used for commercial breeding purposes.

 

(c)                                   Compliance with Merck’s Ethical Business Practices .

 

(i)                                      Compliance with Merck’s Corporate Policy .  Ra acknowledges that Merck’s corporate policy requires that Merck’s business must be conducted within the letter and spirit of the law.  By signing this Agreement, Ra agrees to conduct the activities contemplated herein in a manner which is consistent with both law and good business ethics.

 

(ii)                                   Governments and International Public Organizations .  Ra will not make any payment, either directly or indirectly, of money or other assets, including but not limited to the compensation Ra derives from this Agreement (hereinafter collectively referred as a “ Payment ”), to government or political party officials, officials of international public organizations, candidates for public office, or

 

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representatives of other businesses or persons acting on behalf of any of the foregoing (hereinafter collectively referred as “ Officials ”) where such Payment would constitute a violation of any law.  In addition regardless of legality, Ra will make no Payment either directly or indirectly to Officials if such Payment is for the purpose of influencing decisions or actions with respect to the subject matter of this Agreement or any other aspect of Merck’s business.

 

(iii)                                No Authority .  Ra acknowledges that no employee of Merck or its Affiliates will have authority to give any direction, either written or oral, relating to the making of any commitment by Ra or its agents to any Third Party in violation of terms of this Section 2.6 or any other provisions of this Agreement.

 

(iv)                               Exclusions Lists .  Ra certifies to Merck that as of the Effective Date Ra has screened itself, and its officers and directors against the Exclusions Lists and that it has informed Merck whether Ra, or any of its officers or directors has been in Violation.  After the execution of this Agreement, Ra will notify Merck in writing immediately if any such Violation occurs or comes to its attention.  As used herein, “ Violation ” means that Ra or any of its officers or directors or any other Ra personnel has been:  (1) convicted of any of the felonies identified among the exclusion authorities listed on the U.S. Department of Health and Human Services, Office of Inspector General (OIG) website, including 42 U.S.C. 1320a-7(a) (http://oig.hhs.gov/exclusions/authorities.asp); (2) identified in the OIG List of Excluded Individuals/Entities (LEIE) database (http://exclusions.oig.hhs.gov/) or the U.S. General Services Administration’s list of Parties Excluded from Federal Programs (http://www.epls.gov); or (3) listed by any US Federal agency as being suspended, debarred, excluded or otherwise ineligible to participate in Federal procurement or non-procurement programs, including under 21 U.S.C. 335a (http://www.fda.gov/ora/compliance_ref/debar/) (each of (1), (2) and (3) collectively the “ Exclusions Lists ”).

 

(v)                                  Material Breach .  Ra’s failure to abide by the provisions of this Section 2.6(c) will be deemed a material breach of this Agreement.  Merck may in such case terminate this Agreement at its sole discretion upon written notice to Ra (and if Merck elects to so terminate this Agreement, Merck will be deemed to have terminated this Agreement under Section 12.3 but with a right to cure) and without prejudice to any other remedies that may be available to Merck.

 

(vi)                               Indemnification .  Ra will indemnify and hold Merck and any of its Affiliates harmless from and against any and all liabilities (including all costs and reasonable attorneys’ fees associated with defending against such claims) that may arise by reason of the acts or omissions of Ra or its agents or other Third Parties acting on Ra’s behalf which would constitute a violation of this Section 2.6(c), save for those liabilities arising from any willful misconduct or gross negligence of Merck or any of its agents or other Third Parties acting on Merck’s behalf.

 

3.                                       Research Collaboration Governance.

 

3.1                                Collaboration Leads .  On or as soon as practicable after the Effective Date (but in all cases prior to the first meeting of the JSC), each of Ra and Merck will designate one of its individual employees to serve as that party’s Collaboration Lead and primary point of contact for matters related to the coordination of Research Collaboration activities.  The Collaboration Leads will also serve as co-chairpersons of the JSC.  A party will have the right to change its Collaboration Lead, and designate a different one of its individual employees to serve in such capacity by providing written notice thereof to the other party.

 

3.2                                Joint Steering Committee .

 

(a)                                  Membership and Participation .  On or as soon as practicable after the Effective Date, the parties will establish a Joint Steering Committee (the “ JSC ”), comprised of the [ *** ] of each of Ra and Merck, one of

 

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whom will be [ *** ] .  Each party may replace any of its representatives on the JSC at any time upon written notice to the other party.  Each party’s alliance manager will have responsibility for generating JSC meeting schedules and agendas and other administrative matters related to the conduct of JSC meetings, but will not have any decision making authority.  A party may invite others of its or its Affiliates’ employees to attend and participate in relevant portions of meetings of the JSC as necessary to facilitate the sharing of information and discussion of any issues related to the Research Operating Plans or performance of the Research Collaboration.  A party will notify the other party’s Collaboration Lead in writing if it wishes to invite a Third Party consultant or contractor to attend a JSC meeting.  Any such notice will be provided at least five (5) business days prior to the relevant JSC meeting, will identify the Third Party consultant or contractor, and will briefly describe the reasons the requesting party wishes to include such individual at the meeting.  The attendance and participation of any such Third Party consultant or contractor will be subject to the prior written consent of the other party (which will not be unreasonably withheld).  Any such consent will be conditioned upon the following: (i) the Third Party consultant or contractor is bound by written obligations of confidentiality and non-use to the requesting party that are consistent with the provisions of this Agreement; and (ii) the Third Party consultant or contractor either (1) executes a commitment letter substantially in the form attached hereto as Exhibit 3.2(a) , or (2) enters into a suitable confidentiality and non-use agreement with the consenting party.  The parties’ respective alliance managers will be responsible for ensuring compliance with the foregoing.

 

(b)                                  Meetings .  The JSC will meet during the Research Term at least [ *** ], or as otherwise agreed, at such times as are agreed to by the JSC members.  Such meetings may be in-person, via videoconference, or via teleconference; provided that such meetings will be conducted in person at least [ *** ] per year during the Research Term unless otherwise agreed to by the parties.  Meetings of the JSC will be effective only if at least one (1) representative of each party is present or participating.  Each party will be responsible for all of its own expenses of participating in the JSC meetings.  Ra’s Collaboration Lead will be responsible for chairing JSC meetings during the [ *** ] of the Research Term, and such responsibility will thereafter alternate between Ra’s Collaboration Lead and Merck’s Collaboration Lead for [ *** ] the remainder of the Research Term.  The parties shall maintain minutes of JSC meetings, and the alliance managers will be responsible for generating and circulating such minutes.  The JSC will cease to exist and no further JSC meetings will occur following the expiration of the Research Term.

 

(c)                                   JSC Responsibilities .  The JSC will be responsible during the Research Term for monitoring and coordinating the performance of the Research Collaboration in accordance with the Research Operating Plans.  Specific JSC responsibilities will include the following:

 

(i)                                      Periodic review of the parties’ efforts and progress under the Research Operating Plans;

 

(ii)                                   Prioritization of specific activities to be performed under the Research Operating Plans;

 

(iii)                                Review and approval of any proposed modifications or amendments to the Research Operating Plans;

 

(iv)                               Recommending changes to the Hit Class of Interest Criteria and Progressable Lead Class Criteria for the parties’ consideration;

 

(v)                                  Review and identification of Hit Classes of Interest and Progressable Lead Classes for which pre-clinical Development work should be performed as part of the Research Collaboration;

 

(vi)                               Recommendation of possible Hit Classes of Interest and Progressable Lead Classes; and

 

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(vii)                            Serving as a forum for the parties to discuss any issues arising with respect to the conduct or results of the Research Collaboration.

 

(d)                                  Decision-making by the JSC .  Any decisions by the JSC will be made [ *** ].  If the JSC cannot reach consensus on a matter, then Merck will have final decision-making authority (other than with respect to the development and use of Ra Core Technology, for which Ra will have final decision-making authority); provided, however, that Merck will not have the right to unilaterally alter, increase or expand the parties’ rights or obligations under this Agreement or otherwise be in conflict with the terms of this Agreement (including those decisions hereunder expressly to be made by one or both of the parties as opposed to the JSC).  The parties acknowledge and agree that the JSC will not have the power or authority to amend or modify any of the terms of this Agreement or to waive any party’s rights or obligations hereunder.

 

3.3                                Review of Matters by Senior Research Officers .  Each party will designate one of its senior research executives having decision-making authority on behalf of such party with respect to matters within the scope of the Research Collaboration (the “ Senior Research Officers ”).  During the Research Term, either party may from time-to-time reasonably request a meeting of the Senior Research Officers to discuss issues or concerns arising with respect to the Research Collaboration.  Any such request will be communicated in writing to the other party’s Program Lead and should include a summary clearly identifying the specific matters the requesting party wishes to discuss.  The Senior Research Officers (or their designees with decision-making authority and who are not members of the JSC) will then arrange a mutually acceptable time to meet (whether in-person, by video conference, or by phone) to discuss such matters; provided that neither party will be obligated to agree to more than two (2) such meetings during each year of the Research Term.

 

4.                                       Development and Commercialization.

 

4.1                                Product Development Program.

 

(a)                                  Development .  After the end of the Research Term, on a Program Target-by-Program Target basis, as between the parties, Merck will have the sole right to Develop (at its own expense) Compounds and Products, and Ra will have no right to do so (other than the performance of its activities under the Research Collaboration in accordance with the Research Operating Plans and this Agreement).  Without limiting the generality of the foregoing, Merck will have sole decision-making authority with respect to the conduct of Development activities, including decisions with respect to the selection and prioritization of which Compounds and Products and which indications to Develop [ *** ].

 

(b)                                  Periodic Reporting.  After the end of the Research Term and for the remainder of the Term on a Program Target-by-Program Target basis, Merck will provide Ra with periodic (at least annual) written updates detailing its efforts over the previous period and plans for each Program Target in the next period.  Merck will notify Ra in writing within [ *** ] of discontinuing efforts under this Agreement against a Program Target.  In addition, the parties will periodically meet telephonically or by other means no more frequently than annually to discuss Merck’s efforts under this Agreement with respect to each Program Target, including with respect to Merck’s efforts to Develop, seek Regulatory Approval for, and Commercialize the Products under this Agreement, and Merck also will consider in good faith any reasonable requests by Ra for additional information related thereto.

 

(c)                                   Continued Use of Research Materials .  To the extent that Ra has, during the Research Term, provided or otherwise made available to Merck any Materials for use in performance of the Research Operating Plans, Merck will have the right to continue to use such Materials as necessary or appropriate in connection with the Development, Manufacture or Commercialization of Compounds and Products pursuant to this Agreement, consistent with the license by Ra in Section 5.1.

 

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4.2                                Regulatory .  As between the parties, on a Program Target-by-Program Target basis, Merck will have the sole right to control (at its own expense) all regulatory matters related to the Development, Manufacturing and Commercialization of Compounds or Products in the Territory (including during the Research Collaboration), including preparing and filing the relevant applications with the Regulatory Authorities for clinical studies and for Regulatory Approval.  As between the parties, Merck (or its Affiliate or Sublicensee) will have the sole right to communicate and otherwise interact with Regulatory Authorities with respect to the Compounds or Products (including during the Research Term).

 

4.3                                Manufacturing .  As between the parties, on a Program Target-by-Program Target basis, Merck will have the sole right to Manufacture (or have Manufactured) Compounds and Products, and control (at its own expense) all aspects of the Manufacturing and supply of Products, for Development and Commercialization in the Territory.

 

4.4                                Commercialization .  As between the parties, on a Program Target-by-Program Target basis, Merck will have the sole right to Commercialize (or have Commercialized) Products, and control (at its own expense) all aspects of Commercialization of Products.

 

4.5                                Diligence .  During the remainder of the Term after the end of the Research Term, on a Program Target-by-Program Target basis, Merck will use Commercially Reasonable Efforts to Develop, seek Regulatory Approval for, and following Regulatory Approval to Commercialize Products against such Program Target in the Territory.

 

4.6                                Record Keeping and Updates .  Merck will prepare and maintain, and will cause its Affiliates to prepare and maintain, appropriate records (in accordance with its standard policies and procedures) regarding the Development of Products.  During the remainder of the Term after the end of the Research Term, Merck will provide Ra with periodic reports pursuant to Section 4.1(b), summarizing material events and information related to such Development activities undertaken by Merck hereunder in the Territory, including a listing of any Regulatory Approvals achieved for Products for the Territory.  All such information will be considered Merck’s Confidential Information and will be subject to the confidentiality and use restrictions under this Agreement.  Merck will also consider in good faith any reasonable requests by Ra for additional information (to the extent available) related thereto.

 

4.7                                Compliance .

 

(a)                                  Debarment .  Each party hereby certifies (on behalf of itself and its Affiliates) that it will not and has not employed or otherwise used in any capacity the services of any person debarred under Title 21 United States Code Section 335a in performing any activities under this Agreement.  Each party will immediately notify the other party in writing if any such debarment occurs or comes to its attention, and will, with respect to any person or entity so debarred promptly remove such person or entity from performing any activities related to or in connection with the Project Plans or this Agreement.

 

(b)                                  FCPA Compliance .  Each party will, and will ensure that its Affiliates and any Third Party contractors will, comply with the United States Foreign Corrupt Practices Act (as amended), and any analogous laws or regulations existing in any other country or region in the Territory, in connection with its performance under this Agreement.  Neither party will make any payment, either directly or indirectly, of money or other assets, including but not limited to compensation derived from this Agreement, to government or political party officials, officials of international public organizations, candidates for public office, or representatives of other businesses or persons acting on behalf of any of the foregoing, that would constitute violation of any law, rule or regulation.

 

(c)                                   Export Control .  This Agreement and the obligations of the parties hereunder are made subject to, and limited by, all applicable restrictions concerning the export of products or technical information from the United States of America which may be imposed upon or related to Merck or Ra

 

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from time to time by the government of the United States of America.  Furthermore, each party agrees that it will not export, directly or indirectly, any technical information acquired from the other party under this Agreement or any Products using such technical information to any country for which the United States government or any agency thereof at the time of export requires an export license or other governmental approval, without first obtaining the written consent to do so from the Department of Commerce or other agency of the United States government when required by an applicable statute or regulation.

 

5.                                       License Grants.

 

5.1                                Licenses to Merck .  Subject to the terms and conditions of this Agreement, on a Program Target-by-Program Target basis, Ra will grant to Merck:

 

(a)                                  an exclusive (even as to Ra), nontransferable (except in connection with a permitted assignment of this Agreement in accordance with Section 13.9) license, with the right to grant sublicenses or other rights thereunder only to the extent permitted under Section 5.2(b), under Ra Program IP, for the Term only, to Manufacture, Develop and Commercialize (including to make, have made, use, sell, offer for sale and import) Compounds and Products against such Program Target, in the Field and Territory only; and

 

(b)                                  (i) a non-exclusive, nontransferable (except in connection with a permitted assignment of this Agreement in accordance with Section 13.9) license, with the right to grant sublicenses or other rights thereunder only to the extent permitted under Section 5.2(b), under Ra Background IP, for the Term only, to Manufacture, Develop and Commercialize (including to make, have made, use, sell, offer for sale and import) Compounds and Products against such Program Target, in the Field and Territory only; and (ii) a non-exclusive, royalty-free, nontransferable (except in connection with a permitted assignment of this Agreement in accordance with Section 13.9) license, with the right to grant sublicenses or other rights thereunder only to the extent permitted under Section 5.2(b), under improvements to Ra Background IP that are created or conceived solely by or on behalf of Merck or that are created or conceived jointly by or on behalf of the parties, for the Term only, to Manufacture, Develop and Commercialize (including to make, have made, use, sell, offer for sale and import) Compounds and Products against such Program Target, in the Field and Territory only.

 

Notwithstanding anything herein to the contrary, Ra will retain (i) the right to perform the Research Collaboration and (ii) the right to use all Compounds for internal, non-clinical research purposes by itself, its Affiliates and fee-for-service service providers.

 

5.2                                Transfer and Sublicensing .

 

(a)                                  The licenses granted in Section 5.1 are transferable only upon a permitted assignment of this Agreement in accordance with Section 13.9.

 

(b)                                  The licenses granted in Section 5.1 may be sublicensed and other rights granted thereunder by Merck to Sublicensees, but (i) with respect to non-Affiliated Third Party Sublicensees, only with respect to the right to Commercialize Product against such Program Target, in the Field and Territory only, (ii) without the right to grant further sublicenses or other rights thereunder, and (iii) only in compliance with the following:

 

(i)                                      Merck may freely grant a sublicense to an Affiliate of Merck as a Sublicensee hereunder, provided such Affiliate will be engaged in activities related to the Manufacture, Development or Commercialization of Compounds or Products against a Program Target in the Field and Territory, and  provided further such sublicense only remains in effect for as long as such Sublicensee remains an Affiliate of Merck;

 

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(ii)                                   Merck may grant a sublicense to a non-Affiliated Third Party as a Sublicensee hereunder, only after Ra’s prior written consent, not to be unreasonably withheld;

 

(iii)                                Merck will be responsible for any and all obligations of any such Sublicensee as if such Sublicensee were “Merck” hereunder;

 

(iv)                               Any such non-Affiliated Third Party Sublicensee will agree in writing to be bound by similar obligations as “Merck” hereunder with respect to the activities of such Sublicensee hereunder (and not with respect to the activities of any other); and

 

(v)                                  Ra will be made an express third-party beneficiary of any such Sublicensee’s obligations under such agreement that relate to compliance with the terms and conditions of this Agreement.

 

5.3                                Licenses by Merck .  Merck hereby grants to Ra (a) a royalty-free, fully paid-up, non-exclusive, nontransferable (except in connection with a permitted assignment of this Agreement in accordance with Section 13.9) license in the Territory during the Research Term under the Merck Background IP for the sole and limited purpose of permitting Ra to perform its obligations under the Research Collaboration; and (b) a non-exclusive, royalty-free, nontransferable (except in connection with a permitted assignment of this Agreement in accordance with Section 13.9) license, with the right to grant sublicenses or other rights thereunder only to the extent permitted under this Section 5.3, under improvements to Merck Background IP that are created or conceived solely by or on behalf of Ra or that are created or conceived jointly by or on behalf of the parties, for the sole and limited purpose of permitting Ra to perform its obligations under the Research Collaboration.  Ra will have the limited right to grant sublicenses of such license to Ra’s Affiliates or to Third Party subcontractors only if and to the extent necessary for such Affiliates or Third Party subcontractors to perform activities under the Research Operating Plans for and on behalf of Ra in accordance with the terms of Section 2.3.  Further, such sublicenses shall be granted without the right to grant further sublicenses or other rights thereunder, and only in compliance with the following:

 

(i)                                      Ra may grant a sublicense to an Affiliate of Ra as a Sublicensee hereunder, provided such sublicense only remains in effect for as long as such Sublicensee remains an Affiliate of Ra;

 

(ii)                                   Ra may grant a sublicense to a Third Party subcontractor as a Sublicensee hereunder only if and to the extent necessary for such Third Party subcontractor to perform activities under this Agreement for and on behalf of Ra in accordance with Section 2.3, and only after Merck’s prior written consent, not to be unreasonably withheld;

 

(iii)                                Ra will be responsible for any and all obligations of any such Sublicensee as if such Sublicensee were “Ra” hereunder;

 

(iv)                               Any such Third Party subcontractor will agree in writing to be bound by similar obligations as “Ra” hereunder with respect to the activities of such Sublicensee hereunder (and not with respect to the activities of any other); and

 

(v)                                  Merck will be made an express third-party beneficiary of any such Sublicensee’s obligations under such agreement that relate to compliance with the terms and conditions of this Agreement.

 

5.4                                No Implied Licenses .

 

(a)                                  Nothing herein will be construed as creating, granting or otherwise conveying to either party any license or other right (whether by implication, estoppel or otherwise) other than those licenses and other rights that are expressly provided for in this Agreement.

 

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(b)                                  Notwithstanding anything herein to the contrary, (i) the licenses and other rights granted by Ra to Merck hereunder do not include any right to use or otherwise practice any Ra Core Technology, (ii) Ra will not be required to share or otherwise disclose any Ra Core Technology to Merck (other than compounds isolated from mRNA Display libraries for a Program Target, as contemplated pursuant to this Agreement, and (iii) neither Merck nor any Affiliates or Sublicensees will use or otherwise practice any Ra Core Technology.

 

6.                                       Payments and Royalties.

 

6.1                                Access Fees .

 

(a)                                  Technology Access Fee .  Merck will pay to Ra a one-time up-front technology access fee payment of four million five hundred thousand U.S. dollars (U.S.$4,500,000), which covers all Program Targets [ *** ].  Such payment will be due within [ *** ] business days after the Effective Date and will be non-refundable and non-creditable.

 

(b)                                  [ *** ] Target Access Fee .  Merck will pay to Ra a one-time up-front technology access fee payment of [ *** ] U.S. dollars (U.S.$ [ *** ]) for the designation of [ *** ] as a new Program Target pursuant to Section 2.1(c).  Such payment will be due within [ *** ]  business days after [ *** ] becomes a Program Target and will be non-refundable, non-creditable and not subject to set-off.  For clarity, the right to designate [ *** ] as a new Program Target is subject to the conditions in Section 2.1(c)(ii).

 

6.2                                Research Collaboration Support .

 

(a)                                  FTE .  The payment of funding for Ra FTEs during the Research Term for which Merck is responsible under Section 2.1(g) will be due and payable in [ *** ] installments as further provided in this Section 6.2, and will be non-refundable, non-creditable and not subject to set-off except as provided in Section 6.2(a)(iii).

 

(i)                                      Calculation of Semi-Annual FTE Payments .  Merck will pay Ra the FTE Rate for the number of FTEs of Ra specified in the Research Operating Plans during the Research Term.  The parties agree that there will be at least [ *** ] and not more than [ *** ] FTEs for each Program Target that is part of the Research Collaboration.  Such payments by Merck will be payable to Ra in an amount equal to fifty percent (50%) of the product of the FTE Rate times the number of FTEs for the relevant year (twelve month period) of the Research Term (such payment to be prorated for the last semi-annual period of the Research Term).

 

(ii)                                   Timing of FTE Payments .  The first [ *** ] payment of FTE support will be due and payable to Ra within [ *** ] business days after the Effective Date.  Each [ *** ] payment thereafter will be due and payable to Ra within [ *** ] business days after the commencement of each subsequent [ *** ]  period thereafter.

 

(iii)                                Reconciliation .  Within [ *** ] days following each of the first and second anniversary of the Effective Date (and optionally each anniversary of the Effective Date thereafter if the Research Term is extended), Ra will submit to Merck a written report setting forth in reasonable detail the actual number of FTEs expended by Ra to perform activities under the Research Operating Plans during the past year (twelve month period) of the Research Term.  Each such report will be substantially in the form attached hereto as Exhibit 6.2(a)(iii) .  In the event that Ra expended less than the number of FTEs funded by Merck for such year, Ra will, along with the written report, make a payment to Merck in an amount equal to (i) the total amount of FTE funding paid to Ra by Merck for such year less (ii) the actual number FTEs expended by Ra during such year multiplied by the FTE Rate.  There shall be no obligation for Merck to reimburse or make additional payments for FTEs for a Program Target after it has successfully achieved its hand-off Progressable Lead Class criteria, as determined by the JSC, and for which the corresponding milestone payment set forth in Section 6.3(a) has been paid.

 

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(b)                                  External Expenses .  Merck will reimburse Ra within thirty (30) days of receiving any invoice from Ra for those expenses incurred by Ra in accordance with Section 2.1(g).

 

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6.3          Milestone Payments .  Merck will pay to Ra each of the applicable milestone payments provided for in this Section 6.3 upon the first occurrence of the indicated milestone event.  The following milestone payments will be paid only once on a Program Target-by-Program Target basis for the first time the first Compound or Product directed to such Program Target achieves the indicated milestone event.  Following such payment, the subsequent repeated occurrence of the same milestone event by the same or another Compound or Product directed to such Program Target will not under any circumstances trigger any additional milestone payment as a result of such event.  Each such milestone payment will be due and payable to Ra within [ *** ] days after the achievement of the specified milestone event, and will be non-refundable, non-creditable and [ *** ].

 

(a)                                  Preclinical Development Milestones .

 

Milestone Event

 

Milestone Payment

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

 

(b)                                  Development and First Commercial Sale Milestones .

 

Milestone Event

 

Milestone Payment

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

 

[ *** ] .

 

(c)                                   Sales Milestones .  The following sales-based milestone payments will become due and payable within thirty (30) days after the first achievement of the indicated milestone event on a Program Target-by-Program Target basis in the Territory.  Following such payment, the subsequent repeated occurrence of the same milestone event for any Products directed to such Program Target will not trigger any additional milestone payment.

 

Milestone Event

 

Milestone Payment

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

 

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6.4                                Royalties .  Merck will pay to Ra, on a Product-by-Product basis, running royalties on Net Sales of Products in the Territory at the applicable royalty rates, as set forth in the following table:

 

Aggregate Total of Annual Net Sales of a Product in 
the Territory

 

Royalty Rate

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

 

(a)                                  Duration of Royalty Obligations .  Merck’s obligation to pay royalties under Section 6.4 will be in effect during the “ Royalty Period ” which begins on the date of First Commercial Sale of a Product in the Territory and will expire on a Product-by-Product and country-by-country basis upon the later of:

 

(i)                                      The last Valid Claim of a Patent owned or controlled by Ra or Merck that Covers such Product in such country; or

 

(ii)                                   [ *** ] years after the First Commercial Sale of such Product in such country;

 

provided that, for Net Sales of a Product in any country, for the period of time (if any) that the Royalty Period for such Product in such country is based on clause (ii) above alone and not on clause (i) above, then the royalty rates set forth in the table above will be [ *** ].

 

(b)                                  Additional Provisions Regarding Royalties .  For purposes of determining Merck’s royalty payment obligations under Section 6.4, all Products containing the same Compound as an active ingredient (but irrespective of dosage form, dosage strength or formulation) will be treated as the same Product; provided, however, that Products containing a fixed combination of a Compound and one or more other active ingredients will be considered as different from any Products containing the same Compound as the sole active ingredient.  In addition, Merck’s royalty obligations under Section 6.4 will be subject to the following conditions:

 

(i)                                      [ *** ];

 

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(ii)                                   [ *** ];

 

(iii)                                [ *** ];

 

(iv)                               [ *** ];

 

(v)                                  [ *** ]

 

(vi)                               [ *** ].

 

(c)                                   Third Party Licenses .  [ *** ].

 

(d)                                  Reports and Timing of Royalty Payments .  Starting on the date of First Commercial Sale of a Product in the Territory, Merck will furnish to Ra a quarterly written report for each subsequent calendar quarter showing the Net Sales of all Products sold by Merck, its Affiliates and Sublicensees for which royalties are payable hereunder, and the royalties due Ra on such sales. Each such royalty report will be due within [ *** ] days after the end of the relevant calendar quarter.  The royalty payments due under Section 6.4 for each calendar quarter will be due and payable to Ra on the same date that the royalty report for the calendar quarter is due.  Each royalty report will describe in reasonable detail (based upon the data then available to Merck) the Net Sales of each Product (including the deductions specified in clauses (i) through (vi) of the Net Sales definition) and the calculation of royalty payments due for the relevant calendar quarter.  The information contained in each report under this Section 6.4(d) will be considered Confidential Information of Merck.

 

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6.5                                Payment Terms .  This Section 6.5 will apply to all payments to be made by one party to the other hereunder.

 

(a)                                  Manner of Payment .  All payments to be made by one party to the other party under this Agreement will be made in United States dollars and by bank wire transfer in immediately available funds to such bank account as may be designated in writing by such party from time to time.  Until further notice delivered by Ra in accordance with this Agreement, the account and associated wire instructions shall be as set forth in Exhibit 6.5(a) .  In the case of royalties due on sales of Product outside the United States, the rate of exchange to be used in computing on a monthly basis the applicable royalty due Ra in U.S. dollars will be made at the monthly rate of exchange utilized by Merck in its worldwide accounting system, prevailing on the third to the last business day of the month preceding the month in which such sales are recorded.

 

(b)                                  Records and Audits .  Merck will maintain (and will cause its Affiliates or Sublicensees to maintain) accurate books and records of accounting to document the sales of Products and the calculation of royalties payable to Ra in the Territory.  For a period of [ *** ] following the end of the relevant calendar year, the relevant books and records will, upon written request by Ra, be made reasonably available for inspection by an internationally recognized firm of independent certified public accountants (to be selected by Ra and reasonably acceptable to Merck) as reasonably necessary to verify the accuracy of royalty reports for the relevant period.  Access to such books and records will be during normal business hours and upon reasonable prior notice; provided that in no event will any such audits or inspections be conducted more frequently than once per calendar year.  The auditors will, upon request, enter into a confidentiality agreement as reasonably requested by Merck.  The auditors will be permitted to disclose to Ra only whether the royalty reports are correct or incorrect, and the details and amounts of any discrepancies.  The auditors will also provide to Merck, upon request, a copy of any audit reports and findings that are provided to Ra as a result of such inspection.  If the auditors correctly identify any underpayments or overpayments, the amount of any underpayments will be paid to Ra by Merck within [ *** ] days of notification of the results of such inspection, and any overpayments will be fully creditable against amounts payable to Ra in subsequent periods.  Ra will be solely responsible for the costs and expenses of any such audit inspections, provided, however, that if such audit uncovers an underpayment of royalties by Merck that exceeds the greater of [ *** ] dollars ($US [ *** ]) and [ *** ] percent ([ *** ] %) of the total royalties owed for a calendar year, then Merck will reimburse Ra for the reasonable documented audit fees expenses charged by the auditors for such audit inspection.  For clarity, upon the expiration of [ *** ] following the end of any calendar year, absent willful misconduct or fraud by Merck or any of its Affiliates or Sublicensees, the calculation of royalties payable to Ra under this Agreement with respect to such calendar year will become binding and conclusive upon the parties and their Affiliates, and Merck (and its Affiliates and Sublicensees) and Ra and its Affiliates will be released from any liability or accountability with respect to royalties due or overpayments made under this Agreement for sales of Products during such calendar year.  To the extent the provisions of Section 12.6(a)(v)(B)(3) are triggered, the above records and audit provisions shall apply mutatis mutandis to Ra’s payment of royalties to Merck, and Merck’s right to audit in connection therewith.

 

(c)                                   Taxes .  Ra will be liable for all income and other taxes (including interest) imposed upon any payments made by Merck to Ra pursuant to this Agreement.  If applicable laws, rules or regulations require the withholding of such taxes, Merck will make such withholding payments and will subtract the amount thereof from the payments due Ra.  Merck will submit to Ra appropriate proof of payment of the withheld taxes as well as the official receipts within a reasonable period of time.  Merck will, upon request, provide Ra with reasonable assistance in order to assist Ra in seeking the benefit of any present or future tax exemptions or treaties against double taxation which may apply to any payments due Ra under this Agreement.  Notwithstanding the foregoing, no withholding will be made on any payments by Merck to Ra under Section 6.1 or 6.2.

 

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(d)                                  Interest Due .  If any uncontested amount properly due and payable to a party under this Agreement is overdue, then the paying party will also pay interest on the unpaid amount accrued at the annual rate USD [ *** ] from the date of payment was due.

 

(e)                                   Mutual Convenience of the Parties .  The royalty and other payment obligations set forth hereunder have been agreed to by the parties for the purpose of reflecting and advancing their mutual convenience, including the ease of calculating and paying royalties and other amounts to Ra.

 

7.                                       Intellectual Property.

 

7.1                                Background IP .  As between the parties, (a) Ra will own all right, title and interest in and to the Ra Background IP and the Ra Core Technology, and (b) Merck will own all right, title and interest in and to the Merck Background IP.

 

7.2                                Ownership and Inventorship .

 

(a)                                  New Ra Core Technology .  As between the parties, Ra will solely own all right, title and interest in and to any Program IP that constitutes Ra Core Technology (including improvements to Ra Core Technology) or an improvement to Ra Background IP, and all right, title and interest thereto will automatically vest solely in Ra.  Merck, for itself and on behalf of its Affiliates and subcontractors, and employees, subcontractors, consultants and agents of any of the foregoing, hereby assigns (and to the extent such assignment can only be made in the future hereby agrees to assign), to Ra all right, title and interest in and to such Program IP to Ra (unless already owned by Ra).  Merck will cooperate, and will cause the foregoing persons and entities to cooperate, with Ra to effectuate and perfect the foregoing ownership, including by promptly executing and recording assignments and other documents consistent with such ownership.

 

(b)                                  Improvements to Merck Background IP .   As between the parties, Merck will solely own all right, title and interest in and to any Program IP that constitutes an improvement to Merck Background IP, and all right, title and interest thereto will automatically vest solely in Merck.  Ra, for itself and on behalf of its Affiliates and subcontractors, and employees, subcontractors, consultants and agents of any of the foregoing, hereby assigns (and to the extent such assignment can only be made in the future hereby agrees to assign), to Merck all right, title and interest in and to such Program IP to Merck (unless already owned by Merck).  Ra will cooperate, and will cause the foregoing persons and entities to cooperate, with Merck to effectuate and perfect the foregoing ownership, including by promptly executing and recording assignments and other documents consistent with such ownership.

 

(c)                                   Sole and Joint Program IP .

 

(i)                                      Except as otherwise provided in Section 7.2(a) and 7.2(b), ownership of any Program IP created or conceived solely by or on behalf of a party will be solely owned by such party (referred to herein as “ Sole Program IP ” for each party), and if created or conceived jointly by or on behalf of the parties will be jointly owned by the parties (referred to herein as “ Joint Program IP ”).

 

(ii)                                   Each party will have an undivided one-half interest in and to Joint Program IP.  Each party will exercise its ownership rights in and to such Joint Program IP, including the right to license and sublicense or otherwise to exploit, transfer or encumber its ownership interest, without an accounting or obligation to, or consent required from, the other party, but subject to the licenses hereunder and the other terms and conditions of this Agreement.  At the reasonable written request of a party, the other party will in writing grant such consents and confirm that no such accounting is required to effect the foregoing regarding Joint Program IP.

 

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(iii)                                Subject to the terms and conditions of this Agreement (including Articles 8 and 9):

 

(A)                                Each party will be solely responsible for the Prosecution and Maintenance, and the enforcement and defense, of any Patents within its Sole Program IP, and the other party will have no rights with respect thereto; and

 

(B)                                The Prosecution and Maintenance, and the enforcement and defense, of any Patents within Joint Program IP will be jointly managed by the parties on mutually agreeable terms to be entered into by the parties at the time any such Patents are first filed, and all recoveries and out-of-pocket costs and expenses arising from those activities, absent further agreement, will be shared equally by the parties (provided that sufficient advance written notice of any such costs or expenses is given to the party not incurring same), provided that if either party elects not to pay any such costs or expenses for any such Patent, the parties will meet and agree upon an equitable way to treat such Patent.  In the event that one party desires to proceed with the Prosecution or Maintenance of a Patent, and the other party does not, then the party desiring to proceed may proceed with such action at the proceeding party’s expense, and the proceeding party may abandon such activities at any time without the consent of the other party.

 

(d)                                  Inventorship .  Inventorship determination for all Patents worldwide arising from any Program IP and thus the ownership thereof will be made in accordance with applicable United States patent laws.  Both Ra and Merck agree to maintain documentation or information useful in the determination of inventorship, and each party agrees to provide the other party such documentation or information as reasonably requested.

 

7.3                                Disclosure of Program IP .  During the Term, Ra will promptly (and at least on a calendar quarterly basis) disclose to Merck any Program IP created or conceived by or on behalf of Ra (other than Ra Core Technology or improvements thereto), and will provide such documentation regarding same as Merck may reasonably request.  During the Term, Merck will promptly (and at least on a calendar quarterly basis) disclose to Ra any Program IP created or conceived by or on behalf of Merck (other than improvements to Merck Background IP), and will provide such documentation regarding same as Ra may reasonably request.

 

7.4                                Joint Research Agreement .  This Agreement will be understood to be a joint research agreement in accordance with 35 USC § 103(c)(3) to Develop and Commercialize Products in the Field and Territory, provided that neither party will be required by this reference to have any Patent take advantage of or become subject to such § 103(c)(3) except in accordance with the provisions of this Agreement regarding Prosecution and Maintenance of such Patent.

 

8.                                       Patent Prosecution and Maintenance

 

8.1                                Exclusive Patents .  The following provisions of this Section 8.1 will apply to those Patents within Ra Program IP when subject to the exclusive license granted by Ra in Section 5.1(a), and then only with respect to the scope of such exclusive license in the Field and Territory (each such Patent, only when so subject, an “ Exclusive Patent ”).

 

(a)                                  Ra will have the sole right to Prosecute and Maintain the Exclusive Patents, and Merck will have no rights with respect thereto except as set forth in Section 8.1(b).

 

(b)                                  Ra will regularly provide Merck with copies of all Exclusive Patent applications, and all other material submissions and correspondence with any Patent authorities regarding Exclusive Patents, in sufficient time to allow for review and comment by Merck.  In addition, Ra will provide Merck and its counsel with an opportunity to consult with Ra and its counsel regarding Prosecution and Maintenance of any Exclusive Patent.  In the event of any disagreement between any of Ra or Merck, Ra will have the final decision-making authority with respect to the matter involved as long as Ra acts in good faith.

 

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(c)                                   Merck will reimburse Ra for all of the Patent Costs incurred by Ra [ *** ].

 

8.2                                Other Ra Patents .

 

(a)                                  Ra will have the sole right to Prosecute and Maintain (i) the Patents within the Ra Program IP other than the Exclusive Patents and (ii) the Ra Background Patents, and Merck will have no rights with respect thereto.

 

(b)                                  Merck will reimburse Ra the following percentage of Patent Costs incurred by Ra for each such Patent described in Section 8.2(a) (on a Patent-by-Patent basis): [ *** ].  Merck will reimburse Ra its percentage share of the Patent Costs within [ *** ] after Merck’s receipt of Ra’s invoice for Patent Costs incurred by Ra associated with those Prosecution or Maintenance activities for such Patents.

 

8.3                                Cooperation .  Merck will reasonably cooperate with Ra in the Prosecution and Maintenance of the Patents within the Ra Program IP and the Ra Background Patents.  Such cooperation will include promptly executing all documents, or requiring inventors, employees and consultants and agents of Merck and its Affiliates and Sublicensees to execute all documents, as reasonable and appropriate so as to enable the Prosecution and Maintenance of any such Patents in any country.

 

8.4                                Patent Marking .  Merck will mark, and will cause its Affiliates and Sublicensees to mark, Product with all Exclusive Patents and Ra Background Patents in accordance with the patent laws of the jurisdictions in which Product is manufactured, used or sold.  Merck’s marking obligations under this Section 8.4 will continue for as long as Merck is licensed to such Patent.

 

8.5                                Patent Extensions .  If any election for Patent term restoration or extension, supplemental protection certificate or any of their equivalents may be made for Patents within Program IP (other than Program IP that constitutes Ra Core Technology or improvements thereto), after consultation with Ra (other than for Merck Patents), Merck will have the sole right to make such election and Ra agrees to abide by such election.

 

8.6                                Orange Book Patent Listings .  With respect to any Patent listings required for any regulatory exclusivity periods for Products anywhere in the Territory, the parties will agree on which (if any) Exclusive Patents to list.  Merck will not seek to list any Patents within the Ra Program IP or any Ra Background Patents, without the prior written consent of Ra, in which case Ra’s consent shall not be unreasonably withheld if Merck believes listing is necessary in order to comply with the laws of any countries of the Territory.

 

9.                                       Patent Enforcement and Defense.

 

9.1                                Notice .  Each party will notify the other party in writing of any actual or suspected Competitive Infringement of any Exclusive Patents by a Third Party, or of any claim of invalidity, unenforceability, or non-infringement of any Exclusive Patents, and will, along with such notice, supply the other party with any evidence in its Control pertaining thereto.  For purposes of this Agreement, “ Competitive Infringement ” means any allegedly infringing activity with respect to an Exclusive Patent, which activity falls within the scope then in effect of the exclusive license granted by Ra to Merck as set forth in Section 5.1(a).

 

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9.2                                Enforcement and Defense .

 

(a)                                  Exclusive Patents and Competitive Infringement.   As between the parties, Merck will have the first right, but not the obligation, to seek to abate any actual or suspected Competitive Infringement of the Exclusive Patents by a Third Party, or to file suit against any such Third Party for such Competitive Infringement.  If Merck does not take steps to abate any such Competitive Infringement, or file suit to enforce the Exclusive Patents against such Third Party with respect to such Competitive Infringement, within a commercially reasonably time, Ra will have the right (but not the obligation) to take action to enforce the Exclusive Patents against such Third Party for such Competitive Infringement.  The controlling party will pay all its Patent Costs incurred for such enforcement.  Neither party will exercise any of its enforcement rights under this Section 9.2(a) without first consulting with the other party, provided that this consultation requirement will not limit each party’s rights under this Section 9.2(a).

 

(b)                                  Defense.   As between the parties, Ra will have the first right, but not the obligation, to defend against a declaratory judgment action or other action challenging any Exclusive Patents, other than with respect to (i) any interferences, oppositions, reissues or reexaminations, which are addressed in 8, or (ii) any counter-claims in any enforcement action, or any action by a Third Party in response to an enforcement action, in each case ((i) and (ii)) brought by Merck alleging infringement of any Exclusive Patents pursuant to Section 9.2(a), which defense will be controlled by Merck.  Merck will reimburse Ra within thirty (30) days after Merck’s receipt of Ra’s invoice for Patent Costs incurred by Ra for any such defense.  If Ra does not take steps to defend within a commercially reasonably time, Merck will have the right (but not the obligation) to so defend.

 

(c)                                   Withdrawal, Cooperation and Participation .  With respect to any infringement or defensive action identified above in this Section 9.2:

 

(i)                                      If the controlling party ceases to pursue or withdraws from such action, it will notify the other party and such other party may substitute itself for the withdrawing party and proceed under the terms and conditions of this Section 9.2.

 

(ii)                                   The non-controlling party will cooperate with the party controlling any such action (as may be reasonably requested by the controlling party), including (a) providing access to relevant documents and other evidence, (b) making its and its Affiliates and licensees (including Sublicensees) and all of their respective employees, consultants and agents available at reasonable business hours and for reasonable periods of time, but only to the extent relevant to such action, and (c) if necessary, by being joined as a party, subject for this clause (c) to the controlling party agreeing to indemnify such non-controlling party for its involvement as a named party in such action and paying those Patent Costs incurred by such party in connection with such joinder.  The party controlling any such action will keep the other party updated with respect to any such action, including providing copies of all documents received or filed in connection with any such action.

 

(iii)                                Each party will have the right to participate or otherwise be involved in any such action controlled by the other party, in each case at the participating party’s sole cost and expense.  If a party elects to so participate or be involved, the controlling party will provide the participating party and its counsel with an opportunity to consult with the controlling party and its counsel regarding the prosecution of such action (including reviewing the contents of any correspondence, legal papers or other documents related thereto), and the controlling party will take into account reasonable requests of the participating party.

 

(d)                                  Settlement.   Merck will not settle or consent to an adverse judgment in any action described in this Section 9.2, including any judgment which affects the scope, validity or enforcement of any Exclusive Patents involved therewith, without the prior written consent of Ra.

 

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(e)                                   Damages.   Unless otherwise agreed by the parties, all monies recovered upon the final judgment or settlement of any action described in Section 9.2(a), or any action described in Section 9.2(b), will be used first to reimburse each of the parties on a pro rata basis for each of their out-of-pocket costs and expenses relating to the action (including reasonable attorneys’ fees, expert witness fees, court costs and other litigation costs and expenses).  Any and all remaining amounts will then be allocated between the parties on a pro rata basis as determined based upon the relative economic losses suffered by each party.

 

9.3                                Other Ra Patents .  Ra will have the sole right, and sole responsibility for all Patent Costs incurred by Ra, to enforce and defend (i) the Patents within the Ra Program IP other than the Exclusive Patents and (ii) the Ra Background Patents, and Merck will have no rights with respect thereto.

 

10.                                Confidentiality.

 

10.1                         Confidentiality .

 

(a)                                  Confidential Information .  Except as expressly provided herein, each of the parties agrees that, for itself and its Affiliates, and for as long as this Agreement is in effect and for a period of ten (10) years thereafter (or in perpetuity for any Confidential Information that qualifies as a trade secret), a party and its Affiliates (the “ Receiving Party ”) receiving Confidential Information of the other party or its Affiliates (the “ Disclosing Party ”) will (i) not disclose such Confidential Information to any Third Party without the prior written consent of the Disclosing Party, except for disclosures expressly permitted below, and (ii) not use such Confidential Information for any purpose except those licensed or otherwise authorized or permitted by this Agreement.  Without limiting the foregoing, Ra Background IP, Ra Program IP and Ra Core Technology will be considered Confidential Information of Ra, and Merck Background IP and Merck Program IP will be considered Confidential Information of Merck.

 

(b)                                  Exceptions .  The obligations in Section 10.1(a) will not apply with respect to any portion of the Confidential Information that the Receiving Party can show by competent proof:

 

(i)                                      is publicly disclosed by the Disclosing Party, either before or after it is disclosed to the Receiving Party hereunder;

 

(ii)                                   was known to the Receiving Party or its Affiliates, without any obligation to keep it confidential or any restriction on its use, prior to disclosure by the Disclosing Party;

 

(iii)                                is subsequently disclosed to the Receiving Party or its Affiliates by a Third Party lawfully in possession thereof and without any obligation to keep it confidential or any restriction on its use;

 

(iv)                               is published by a Third Party or otherwise becomes publicly available or enters the public domain, either before or after it is disclosed to the Receiving Party; or

 

(v)                                  has been independently developed by employees or contractors of the Receiving Party or its Affiliates without the aid, application or use of Confidential Information of the Disclosing Party.

 

(c)                                   Authorized Disclosures .  The Receiving Party may disclose Confidential Information belonging to the Disclosing Party to the extent (and only to the extent) such disclosure is reasonably necessary in the following instances:

 

(i)                                      subject to Section 10.2, by either party in order to comply with applicable non-Patent law (including any securities law or regulation or the rules of any securities exchange, including as a result of the Receiving Party electing to issue securities or list on such exchange) and with judicial

 

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process, if in the reasonable opinion of the Receiving Party’s counsel, such disclosure is reasonably necessary for such compliance;

 

(ii)                                   by either party, in connection with prosecuting or defending litigation, making regulatory filings, and filing, prosecuting, maintaining, defending and enforcing Patents (including Exclusive Patents in accordance with 7);

 

(iii)                                by Merck, to its Affiliates, and to potential or actual permitted Sublicensees, permitted acquirers or assignees under Section 13.9, permitted subcontractors, investment bankers, investors, lenders, and in each case their and each of Merck and its Affiliates’ respective directors, employees, contractors and agents; and

 

(iv)                               by Ra, to its Affiliates, and to potential or actual permitted (1) acquirers or assignees under Section 13.9, (2) collaborators and other (sub)licensees, (3) permitted subcontractors, (4) investment bankers, investors, lenders, and in each case their and each of Ra and its Affiliates’ respective directors, employees, contractors and agents;

 

provided that (x) with respect to Section 10.1(c)(i) or 10.1(c)(ii), where reasonably possible, the Receiving Party will notify the Disclosing Party of the Receiving Party’s intent to make any disclosure pursuant thereto sufficiently prior to making such disclosure so as to allow the Disclosing Party adequate time to take whatever action it may deem appropriate to protect the confidentiality of the information to be disclosed, and (y) with respect to Sections 10.1(c)(iii) and 10.1(c)(iv), each of those named people and entities must be bound prior to disclosure by confidentiality and non-use restrictions at least as restrictive as those contained in this Section 10 (other than investment bankers, investors and lenders, who must be bound prior to disclosure by commercially reasonable obligations of confidentiality).

 

10.2                         Terms of this Agreement; Publicity .

 

(a)                                  The parties agree that the terms of this Agreement will be treated as Confidential Information of both parties, and thus may be disclosed only as permitted by Section 10.1(c).  Each party agrees not to issue any press release or public statement disclosing information relating to this Agreement or the transactions contemplated hereby or the terms hereof without the prior written consent of the other party (or as such consent may be obtained in accordance with Section 10.2(b)), which consent will not be unreasonably withheld, or as permitted by Section 10.1(c).

 

(b)                                  In the event either party (the “ Issuing Party ”) desires to issue a press release or other public statement disclosing information relating to this Agreement or the transactions contemplated hereby or the terms hereof, the Issuing Party will provide the other party (the “ Reviewing Party ”) with a copy of the proposed press release or public statement (the “ Release ”).  The Reviewing Party will have three (3) business days to provide any comments on such Release, and if the Receiving Party fails to provide any comments during such three business-day period, the Reviewing Party will be deemed to have consented to the issuance of such Release.  If the Receiving Party provides any comments, the parties will consult on such Release and work in good faith to prepare a mutually acceptable Release.  Either party may subsequently publicly disclose any information previously contained in any Release so consented to.

 

(c)                                   Ra may issue the press release set forth on Exhibit 10.2(c)  promptly following the Effective Date.

 

10.3                         Publication .  Notwithstanding anything herein to the contrary, either party may propose publication of the results of the Research Collaboration under this Agreement upon three (3) months’ notice prior to submission.  Both parties understand that a reasonable commercial strategy may require delay of publication of information or filing of Patent applications, therefore the parties agree to review and consider delay of publication and filing of Patent applications under certain circumstances.  Once publications have been reviewed by each party and have been approved for publication, the same

 

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publications do not have to be provided again to the other party for review for a later submission for publication.  Expedited reviews for abstracts or poster presentations may be arranged if mutually agreeable to the parties.  Each party also will have the right to require that its Confidential Information that would be disclosed in any such proposed publication be deleted prior to such publication.  Each party will acknowledge the other party’s contributions in any such publication unless otherwise instructed.

 

10.4                         Relationship to the Confidentiality Agreement .  This Agreement supersedes that certain “Mutual Confidential Non-Disclosure Agreement” between the parties dated June 22, 2012; provided that all “Confidential Information” (as defined in that agreement) that was disclosed or received by the parties thereunder will also be deemed to be “Confidential Information” for purposes of this Agreement and will be subject to the terms and conditions of this Agreement.

 

10.5                         Remedies .  Each party will be entitled to seek, in addition to any other right or remedy it may have, at law or in equity, a temporary injunction, without the posting of any bond or other security, enjoining or restraining the other party from any violation or threatened violation of this Article 10.

 

11.                                Warranties; Limitations of Liability; Indemnification.

 

11.1                         Representations and Warranties .  Each party hereby represents and warrants to the other party as of the Effective Date that: (a) it is a corporation duly organized, validly existing, and in good standing under applicable laws; (b) it has obtained all necessary consents, approvals and authorizations of all governmental authorities and other persons or entities required to be obtained by it in connection with this Agreement; (c) the execution, delivery and performance of this Agreement have been duly authorized by all necessary corporate action on its part; and (d) it has the legal right and power to enter into this Agreement, to extend the rights and licenses granted or to be granted to the other in this Agreement, and to fully perform its obligations hereunder.

 

11.2                         Additional Representations and Warranties of Ra .  Ra hereby represents and warrants to Merck as of the Effective Date that: (a) Ra Controls the Ra Background Patents and is entitled to grant the licenses to Merck specified herein with respect thereto; (b) Ra has not granted to any Third Party any rights or licenses under the Ra Background Patents that would conflict with the licenses granted to Merck hereunder; (c) to Ra’s knowledge, any existing issued Ra Background Patents are not invalid or unenforceable, in whole or in part; (d) to Ra’s knowledge, Ra is unaware of any basis upon which a Third Party could challenge the enforceability or validity of any existing issued Ra Background Patents; and (e) there are no claims, judgments or settlements against or owed by Ra, and to Ra’s  knowledge, no pending or threatened claims or litigation, relating to the Ra Background Patents.

 

11.3                         Disclaimers .  Without limiting the respective rights and obligations of the parties expressly set forth herein, each party specifically disclaims any guarantee that the Research Collaboration or any Hit Class of Interest, Progressable Lead Class, Compounds or Products will be successful, in whole or in part.  The failure of the parties to successfully identify a Hit Class of Interest, Progressable Lead Class, Compound or Product will not, of itself, constitute a breach of this Agreement.  EXCEPT AS OTHERWISE EXPRESSLY PROVIDED IN THIS AGREEMENT, THE PARTIES MAKE NO REPRESENTATIONS AND EXTEND NO WARRANTY OF ANY KIND, EITHER EXPRESS OR IMPLIED, WITH RESPECT TO ANY RA IP, MERCK IP, MATERIALS, HIT CLASS OF INTEREST, PROGRESSABLE LEAD CLASS, COMPOUNDS, PRODUCTS, PATENTS OR KNOW-HOW, INCLUDING WARRANTIES OF VALIDITY OR ENFORCEABILITY OF ANY PATENTS, TITLE, QUALITY, MERCHANTABILITY, FITNESS FOR A PARTICULAR USE OR PURPOSE, PERFORMANCE, AND NONINFRINGEMENT OF ANY THIRD PARTY PATENTS OR OTHER INTELLECTUAL PROPERTY RIGHTS.

 

11.4                         No Consequential Damages .  IN NO EVENT WILL EITHER PARTY HAVE ANY CLAIMS AGAINST OR LIABILITY TO THE OTHER PARTY WITH RESPECT TO ANY INDIRECT, PUNITIVE, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES (INCLUDING

 

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ANY CLAIMS FOR LOST PROFITS OR REVENUES) ARISING UNDER OR IN CONNECTION WITH THIS AGREEMENT UNDER ANY THEORY OF LIABILITY, EVEN IF SUCH PARTY HAS BEEN INFORMED OR SHOULD HAVE KNOWN OF THE POSSIBILITY OF SUCH DAMAGES; PROVIDED THAT THE FOREGOING LIMITATION WILL NOT APPLY WITH RESPECT TO INDEMNITY FOR THIRD PARTY CLAIMS AS PROVIDED IN SECTION 11.5.

 

11.5                         Indemnification .

 

(a)                                  Indemnification by Merck .  Merck will indemnify, defend and hold harmless Ra, its Affiliates, and their respective directors, officers, employees and agents (collectively, “ Ra Indemnitees ”) from and against any and all claims, demands, judgments, losses, damages, liabilities, costs and expenses (including reasonable attorneys’ fees and expenses) (collectively, “ Liabilities ”) arising out of or in connection with any and all Third Party claims relating to: (i) any breach by Merck of its covenants, representations and warranties under this Agreement; (ii) the performance of the Research Collaboration by or on behalf of Merck; or (iii) the Development, Manufacture or Commercialization by Merck or any of its Affiliates or Sublicensees of any Progressable Lead Class, Compounds or Products, except in each case to the extent such Liabilities result from the gross negligence or willful misconduct of Ra or any of the Ra Indemnitees.

 

(b)                                  Indemnification by Ra .  Ra will indemnify, defend and hold harmless Merck, its Affiliates, and their respective directors, officers, employees and agents (collectively, “ Merck Indemnitees ”) from and against any and all Liabilities arising out of or in connection with any and all Third Party claims relating to: (i) any breach by Ra of its covenants, representations and warranties under this Agreement; or (ii) the performance of the Research Collaboration by or on behalf Ra, except in each case to the extent such Liabilities result from the gross negligence or willful misconduct of Merck or any of the Merck Indemnitees.

 

(c)                                   Procedures .  In the event that any party intends to claim indemnification under this Section 11.5 with respect to a Liability, it will promptly notify the other party in writing of any such alleged Liability.  The indemnifying party will have the right to control the defense thereof with counsel of its choice; provided, however, that the indemnified party will have the right to retain its own counsel, (with the fees and expenses to be paid by the indemnifying party), if representation by the counsel retained by the indemnifying party would be inappropriate due to actual or potential differing interests between the parties in such proceeding.  The affected Indemnitees will, upon request, cooperate reasonably with the indemnifying party and its legal representatives in the investigation and defense of any action, claim or liability covered by this Section 11.5.  Neither party may settle any claim or action related to a Liability without the consent of the other party, if such settlement would (i) impose any monetary obligation on the other party, (ii) constitute an admission of guilt or wrong-doing by the other party, or (iii) require the other party to submit to an injunction or otherwise limit the other party s rights under this Agreement.  Any payment made by a party to settle any such claim or action will be at its own cost and expense.

 

11.6                         Insurance .  Each party will maintain at its sole cost and expense, an adequate liability insurance or self-insurance program (including product liability insurance) to protect against potential liabilities and risk arising out of activities to be performed under this Agreement and any agreement related hereto and upon such terms (including coverages, deductible limits and self-insured retentions) as are customary in the U.S. pharmaceutical industry for the activities to be conducted by such party under this Agreement.  The coverage limits set forth herein will not create any limitation on a party’s liability to the other under this Agreement.

 

12.                                Term and Termination.

 

12.1                         Term .  This Agreement will commence as of the Effective Date and, unless sooner terminated in accordance with the terms hereof, will continue in effect on a Product-by-Product and

 

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country-by-country basis until the expiration of Merck’s royalty obligations to Ra under Section 6.4 with respect to such Product in such country (the “ Term ”).  Effective upon the expiration of Merck’s royalty obligations to Ra with respect to a given Product in a given country in the Territory: [ *** ].

 

12.2                         Discretionary Termination by Merck .  Merck will have the unilateral right (i) at any time (whether during or after the Research Term) to terminate this Agreement in its entirety (with or without cause) by providing Ra with written notice to that effect, or (ii) at any time (whether during or after the Research Term) on a Program Target-by-Program Target basis (with or without cause) by providing Ra with written notice to that effect and indicating which of the Program Targets are being so terminated.  Any termination under this Section 12.2 will be accomplished by Merck giving [ *** ] advance written notice to Ra (provided, however, that Merck shall have the right to terminate this Agreement with respect to a given Product with immediate effect upon written notice to Ra in the event that Merck identifies a safety or efficacy concern with respect to such Product (a “Safety/Efficacy Termination”)).  In the event that this Agreement is terminated only with respect to a given Program Target pursuant to this Section 12.2 or a Program Target is excluded from this Agreement pursuant to Section 2.1(c)(iii), 2.1(e)(ii) or 2.4, (all such Program Targets so terminated or excluded, collectively “ Terminated Targets ”), then the provisions of Sections 12.6(a)(i)-(iv), 12.6(a)(v)(B), 12.6(a)(vi)-(viii) and 12.7 will apply with respect to the Terminated Targets.

 

12.3                         Termination for Breach .

 

Each party will have the unilateral right to terminate this Agreement at any time during its Term by providing written notice to that effect if the other party is in breach of one or more of its material obligations hereunder and has not cured such breach within [ *** ] after the date of such notice; provided, however, that the period for curing the breach to avoid termination will only be [ *** ] business days in the case of a breach solely due to failure by a party to make an uncontested payment when properly due hereunder.  In the event of a good faith dispute with respect to the existence of a material breach, the cure period will be tolled until such time as the dispute is resolved pursuant to Section 13.1.  Notwithstanding the foregoing, it is agreed that termination pursuant to this Section 12.3 will be on a Program Target-by-Program Target (or Product-by-Product, as applicable) basis, in each case, to which the breach relates, and the non-breaching party cannot terminate this Agreement under this Section 12.3 with respect to a non-affected Program Target or Product, as applicable.

 

12.4                         Termination Upon Bankruptcy .

 

(a)                                  Termination .  Each party will have the unilateral right to terminate this Agreement at any time during its Term by providing written notice with immediate effect in the event that: (i) the other party files in any court or agency pursuant to any statute or regulation of any state, country or jurisdiction, a petition in bankruptcy or insolvency or for reorganization or for a similar arrangement or for the appointment of a receiver or trustee of that party or of its assets, or (ii) if the other party proposes a written agreement of composition or extension of its debts generally, or (iii) if the other party is served with an involuntary petition against it, filed in any insolvency proceeding, and such petition is not dismissed within sixty (60) days after the filing thereof, or (iv) if the other party proposes or is a party to any dissolution or liquidation, or (v) if the other party makes an assignment for the benefit of its creditors.

 

(b)                                  Consequences of Bankruptcy .  All rights and licenses granted under or pursuant to this Agreement by Merck or Ra or their Affiliates are, and will otherwise be deemed to be, for purposes of Section 365(n) of the U.S. Bankruptcy Code, licenses of right to “intellectual property” as defined under Section 101 of the U.S. Bankruptcy Code.  The parties agree that the non-insolvent party (and its Affiliates and licensees and sublicensees) as licensees of such rights under this Agreement, will retain and may fully exercise all of its rights and elections under the U.S. Bankruptcy Code and any foreign

 

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counterparts thereto.  For clarity, the provisions of this Section 12.4(b) will be without prejudice to any rights the terminating party may have arising under any applicable insolvency statute or other applicable law.

 

12.5                         Termination by Ra for IP Challenge .  Ra will have the right to terminate this Agreement in full upon written notice to Merck in the event that Merck or any of its Affiliates or Sublicensees directly or indirectly challenges in a legal or administrative proceeding the patentability, enforceability or validity of any Ra Background Patents or Patents within Ra Program IP (including Exclusive Patents); provided that Ra will not have the right to terminate this Agreement under this Section 12.5 for any such challenge by any Sublicensee if such challenge is dismissed within [***] days of Ra's notice to Merck under this Section 12.5 and not reinstituted or continued. 

 

12.6                         Effects of Termination .  The rights and obligations of the parties upon termination of this Agreement in its entirety or on a Program Target-by-Program Target (or Product-by-Product) basis will be governed by the terms and conditions set forth in this Section 12.6 and in Section 12.7; provided, however, that if the termination relates only to a Terminated Target, Program Target, or Product, then the following provisions will only apply with respect to such Terminated Target (and the Compounds and other compounds as provided below against such Terminated Target), Program Target or Product.

 

(a)                                  In the event of a termination under Section 12.2 (Merck at Will), 12.5 (IP Challenge), or by Ra under Section 12.3 (Merck breach) or by Ra under Section 12.4(a) (Merck bankruptcy):

 

(i)                                      Except as may otherwise be agreed in writing by the parties, Merck will be responsible at its own expense for an orderly wind-down, in accordance with accepted pharmaceutical industry norms and ethical practices, of any then on-going clinical studies hereunder for which it has responsibility.

 

(ii)                                   All licenses and rights granted by Ra to Merck hereunder (including in Section 5.1) will terminate and such licenses and rights will revert to Ra, and Merck and its Affiliates and Sublicensees will have no further rights to use any Ra IP (except as expressly set forth in Section 12.6(a)(i)).  The license granted by Merck to Ra under Section 5.3 will terminate and such license will revert to Merck.  Each party will promptly return to the other party (or as directed by such other party destroy and certify to such other party in writing as to such destruction) all of such other party’s Confidential Information and any Materials, Compounds and Products provided by or on behalf of such other party hereunder that are in such party’s (or its Affiliates’ or in the case of Merck’s Sublicensees’) possession or control, save that such party will have the right to retain (A) one (1) copy of intangible Confidential Information of such other party for legal purposes, and (B) any of the foregoing that such party retains any license or other right hereunder.  Merck and its Affiliates and Sublicensees will not continue to Develop or Commercialize any Compounds or Products.

 

(iii)                                Solely in the event that such termination occurs during the Research Term, effective on such termination, [ *** ].

 

(iv)                               All Regulatory Approvals, regulatory filings, regulatory documents and regulatory communications owned (in whole or in part) or otherwise controlled by Merck and its Affiliates and Sublicensees concerning the Compounds and Products will be assigned to Ra, and Merck will provide to Ra one (1) copy of the foregoing (including all other documents necessary to further Develop and Commercialize Compounds and Products (including all completed and ongoing clinical studies)) and all documents contained in or referenced in any such items, together with the raw and summarized data for any clinical studies (and where reasonably available, electronic copies thereof).  In the event of failure to

 

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obtain assignment, Merck hereby consents and grants to Ra the right to access and reference (without any further action required on the part of Merck, whose authorization to file this consent with any Regulatory Authority is hereby granted) any such item.  Notwithstanding the foregoing, in the event of a Safety/Efficacy Termination, the parties will discuss the appropriate handling of Regulatory Approvals and filings.

 

(v)                                  (A) Only in the event of a termination under Section 12.5 (IP Challenge), or by Ra under Section 12.3 (Merck breach), Merck will grant (without any further action required on the part of Merck) to Ra and its Affiliates:

 

1.                                       [ *** ].

 

2.                                       [ *** ].

 

3.                                       [ *** ].

 

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4.                                       For purposes of clarity, Merck will retain all rights to the intellectual property covered by Sections 12.6(a)(v)(A)(1)-(3) that is not specifically granted to Ra therein.

 

(B)                                In the event of a termination by Merck under Section 12.2 (Merck at Will):

 

1.                                       Merck will grant (without any further action required on the part of Merck) to Ra and its Affiliates the licenses and rights set forth in by Sections 12.6(a)(v)(A)(1)-(3), provided, [ *** ].

 

2.                                       For purposes of clarity, Merck will retain all rights to the intellectual property covered by Section 12.6(a)(v)(B)(1) that is not specifically granted to Ra herein.

 

3.                                       In consideration for the licenses granted by Merck to Ra in Section 12.6(a)(v)(B)(1)(but not Section 12.6(a)(v)(A)), Ra shall pay Merck a royalty on net sales of Defined Compounds and Products whose sale [ *** ] of a Merck Patent but for the license by Merck to Ra in Section 12.6(a)(v)(B)(1) as follows, subject to a maximum royalty payment equal to the amount that Merck invested in the Target program that gave rise to the Defined Compound and Product (including, without limitation, applicable Development, Regulatory, and Commercial expenses, including amounts for capital expenditures related to Manufacture):

 

i.                                           [ *** ].

 

ii.                                        [ *** ].

 

iii.                                     [ *** ].

 

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iv.                                    [ *** ].

 

(vi)                               If, as of the date of the notice of termination, Merck controls (through a license from a Third Party, but not through ownership by Merck or any of its Affiliates) any Merck Background IP (including any improvements to Merck Background IP), Merck Program IP or Reversion Compound IP that otherwise would have been included as in the licenses set forth in Section 12.6(a)(v)(A) or 12.6(a)(v)(B) had Merck (or its Affiliate) owned such Merck Background IP (including any improvements to Merck Background IP), Merck Program IP or Reversion Compound IP, then, subject to any confidentiality restrictions or other legal restrictions, Merck shall use Commercially Reasonable Efforts to introduce Ra to such Third Party licensor such that Ra can discuss obtaining a license to the applicable Know-How or Patents Rights directly from such Third Party for use in connection with the licenses granted thereunder (provided, that for clarity, Merck shall not be required to otherwise assist Ra in obtaining such license except as expressly provided in this Section 12.6(a)(vi)).

 

(vii)                            Upon the termination of this Agreement in its entirety, for any Product launched commercially before such termination, Merck will assign or cause to be assigned any registered trademarks or internet domain names that are specific to and solely used for the Product in the Territory (it being understood that the foregoing will not include any trademarks or internet domain names that contain the corporate or business name(s) of Merck), provided, however, that Ra shall bear all recordation costs and other incidental expenses associated with such assignment.

 

(viii)                         In addition, (1) Merck will have no further rights or obligations under Sections 8.1, 8.2, 8.3 or 8.4, (2) Ra will become the lead responsible party for those Merck Patents and Joint Patents within the Merck Program IP and Reversion Compound IP exclusively licensed to Ra pursuant to Section 12.6(a)(v) (the “ Exclusive Reversion Patents ”), (2) (i) the roles and responsibilities of Ra and Merck as set forth in Sections 8.5 and 8.6 will be reversed with respect to such Exclusive Reversion Patents and (ii) Ra will be solely responsible as set forth in Sections 8.5 and 8.6 with respect to Patents within Ra Program IP and Merck shall have no rights with respect thereto, and (3) (i) the roles and responsibilities of Ra and Merck as set forth in Section 9.2 will be reversed with respect to such Exclusive Reversion Patents and (ii) Ra will be solely responsible as set forth in Section 9.2 with respect to Patents within Ra Program IP and Merck will have no rights with respect thereto.

 

(b)                                  In the event of a termination by Merck under Section 12.3 (Ra breach):

 

(i)                                      As of the effective date of such termination, (A) the licenses granted by Merck to Ra under Section 5.3 will terminate and such licenses will revert to Merck, and (B) Ra will, within thirty (30) days after the effective date of such termination, return to Merck all of Merck’s Confidential Information and any Materials, Compounds and Products provided by or on behalf of Merck or constituting Merck Background IP or Know-How hereunder that are in Ra’s (or its Affiliates’ or sublicensees’) possession or control, provided that Ra may keep one copy of Merck’s Confidential Information in its confidential legal files for purposes of confirming compliance with this Agreement.

 

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(ii)                                   As of the effective date of such termination, the licenses granted to Merck by Ra pursuant to Section 5.1 shall become perpetual, irrevocable licenses.

 

(iii)                                Section 2.5 shall terminate (provided that for clarity, if only a given Program Target is terminated, then Section 2.5 shall only terminate with respect to such terminated Program Target (and the Compounds against such terminated Program Target, as applicable)).

 

(iv)                               [ *** ].

 

(v)                                  Section 2.2(b) shall survive.

 

(vi)                               In addition, (1) Merck will have the sole right to Prosecute and Maintain the Patents within the Ra Program IP, (2) (i) Merck will have the sole right to make any election for Patent term restoration or extension, supplemental protection certificate or any of their equivalents for Patents within Program IP (other than Program IP that constitutes Ra Core Technology or improvements thereto) without consultation with Ra, (ii) Merck will have sole authority to determine which (if any) Exclusive Patents or Patents within the Ra Program IP to list with respect to any Patent listings required for any regulatory exclusivity periods for Products anywhere in the Territory and (iii) Merck will be solely responsible as set forth in Sections 8.5 and 8.6 with respect to Patents within Ra Program IP and Ra shall have no rights with respect thereto, and (3) (i) Ra will have no further rights or obligations under Section 9.2 and (ii) Merck will be solely responsible as set forth in Section 9.2 with respect to Patents within Ra Program IP and Ra will have no rights with respect thereto.

 

12.7                         Survival .  Except as otherwise set forth in Section 12.6, the following provisions (as well as any other provision which by its terms is clearly intended to survive termination or expiration of this Agreement) will survive termination or expiration of this Agreement: Sections 2.2(a), 2.2(b) (but only to the extent specified in Section 12.6), 2.6(c)(vi), 5.4, 6.2(b) (but solely to the extent specified in Section 12.6),  6.3 (but solely to the extent specified in Section 12.6) , 6.4 (but solely to the extent specified in Section 12.6), 6.5, 7.1, 7.2, 7.4 11.3, 11.4, 11.5, 12.1 (but solely with respect to the last sentence as applicable), 12.4(b), 12.6, 12.7 and Articles 1, 8 (but solely to the extent specified in Section 12.6), 9 (but solely to the extent specified in Section 12.6), 10 and 13.  Termination or expiration of this Agreement will not relieve the parties of any liability or obligation which accrued hereunder prior to the effective date of such termination or expiration nor preclude either party from pursuing all rights and remedies it may have hereunder or at law or in equity with respect to any breach of this Agreement nor prejudice either party’s right to obtain performance of any obligation.  All other rights and obligations will terminate upon termination or expiration of this Agreement.

 

13.                                General Provisions.

 

13.1                         Dispute Resolution .  The parties will negotiate in good faith and use reasonable efforts to resolve or settle any dispute, controversy or claim arising from or related to this Agreement or the breach thereof.  In the event that such dispute, controversy or claim is not resolved on an informal basis within thirty (30) days, any party may, by written notice to the other, have such dispute referred to senior executives having decision-making authority on behalf of such party (but not any member of the JSC), who will attempt in good faith to resolve such dispute for a thirty (30) day period following receipt of such written notice.  If the parties do not fully settle by the foregoing process, and a party then wishes to pursue the matter, each such dispute, controversy or claim that is not an Excluded Claim will be finally resolved by binding arbitration in accordance with the Commercial Arbitration Rules and Supplementary Procedures for Large Complex Disputes of the American Arbitration Association (“ AAA ”), and the procedures set forth in Exhibit 13.1 , attached hereto.  Judgment on the arbitration award may be entered in any court having jurisdiction thereof.  As used in this Section 13.1, the term “ Excluded Claim ” means a

 

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dispute, controversy or claim that concerns (i) the ownership, validity or infringement of a Patent, trademark or copyright, or (ii) any antitrust, anti-monopoly or competition law or regulation, whether or not statutory.

 

13.2                         Relationship of the Parties .  The relationship of the parties hereto is that of independent contractors.  Nothing in this Agreement is intended or will be deemed to constitute a partnership, agency, employer-employee or joint venture relationship between the parties.  No party will incur any debts or make any commitments for the other, except to the extent, if at all, specifically provided therein.  There are no express or implied third party beneficiaries hereunder.

 

13.3                         Governing Law .  This Agreement and any dispute regarding the performance or breach hereof will be governed, interpreted and construed in accordance with the laws of the State of New York, without respect to its conflict of laws rules.

 

13.4                         Counterparts; Facsimiles .  This Agreement may be executed in two (2) or more counterparts, each of which will be deemed an original, and all of which together will be deemed to be one and the same instrument.  The execution and delivery of facsimile or PDF copies of this Agreement by the parties will constitute a legal, valid and binding execution and delivery of this Agreement.

 

13.5                         Headings .  All headings in this Agreement are for convenience only and will not affect the meaning of any provision hereof.

 

13.6                         Waiver of Rule of Construction .  Each party has had the opportunity to consult with counsel in connection with the review, drafting and negotiation of this Agreement.  Accordingly, the rule of construction that any ambiguity in this Agreement will be construed against the drafting party will not apply.

 

13.7                         Interpretation .  Any reference in this Agreement to an Article, Section, subsection, paragraph, clause, or Schedule or Exhibit will be deemed to be a reference to an Article, Section, subsection, paragraph, clause, or Schedule or Exhibit, of or to, as the case may be, this Agreement, unless otherwise indicated.  “Herein,” “hereby,” “hereunder,” “hereof” and other equivalent words refer to this Agreement as an entirety and not solely to the particular portion of this Agreement in which any such word is used.  References to any Articles or Sections include Articles, Sections and subsections that are part of the related Article or Section ( e.g. , a section numbered “Section 2.1” would be part of “Article 2”, and references to “Section 2.1” would also refer to material contained in the subsection described as “Section 2.1(a)”).  Unless the context of this Agreement otherwise requires, (a) words of any gender include each other gender, (b) words using the singular will include the plural, and vice versa, (c) whenever any provision of this Agreement uses the term “including” (or “includes” or words of similar import), such term will not be limiting and such term will be deemed to mean “including without limitation” (or “includes without limitation”), and (d) the word “or” will not be construed as exclusive.

 

13.8                         Binding Effect .  This Agreement will inure to the benefit of and be binding upon the parties and their respective lawful successors and assigns.

 

13.9                         Assignment .

 

(a)                                  Neither party may assign this Agreement, delegate its obligations or otherwise transfer (sub)licenses or other rights created by this Agreement, except as expressly provided hereunder or otherwise without the prior written consent of the other party, which consent will not be unreasonably withheld; provided that without the consent of the other party (i) Merck may assign this Agreement to an Affiliate or to its successor in connection with a Change of Control, and (ii) Ra may assign this Agreement to an Affiliate or to its successor in connection with a Change of Control, subject to Section 13.9(b) below.

 

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(b)                                  Ra may, without Merck’s consent, assign this Agreement and its rights and obligations hereunder in connection with a Ra Change of Control subject to the following:

 

(i)                                      Ra shall provide written notice to Merck at least thirty (30) days prior to the completion of a Change of Control, subject to any confidentiality obligations of Ra then in effect (but, if such confidentiality obligations prevent Ra from providing such written notice, Ra shall so notify Merck within fifteen (15) days after the closing of such Change of Control).

 

(ii)                                   the new controlling entity in connection with the Ra Change of Control (the “ Successor ”) shall agree in writing with Merck, within ninety (90) days from the Change of Control event, that it will comply with all of the terms and provisions of this Agreement, including the exclusivity provisions of Section 2.5(a) of this Agreement, subject to the terms of this Section 13.9(b) and Section 13.10.

 

(iii)                                in the event such Successor has, or has an interest in, at the time of such Change of Control or at any time thereafter, a research, development or commercial program to develop Compounds and Products against the Program Targets, such Successor shall, upon consultation with Merck, [ *** ].  For clarity, the foregoing shall not apply to any Sensitive Information that is not treated as Confidential Information under clauses (i)-(v) of Section 10.1(b) or to the extent of any licenses or other rights granted to Ra under Section 12.6(a).

 

(iv)                               Merck may, in its discretion, limit Ra’s and/or the Successor’s rights to receive any further information from or on behalf of Merck with respect to the research, development or commercialization of Compounds or Products under this Agreement, including reports under Section 4.1(b) and royalty reports under Section 6.4(d) to periodic high level summary reports that may only be shared at a senior level within Ra or the Successor, and which information shall remain subject to Article 10 and the restrictions set forth in this Section 13.9(b).  Notwithstanding the foregoing, following such Change of Control of Ra, Ra shall be allowed to provide the amount of financial payments (including the underlying reports) from Merck to Ra hereunder to the Successor.

 

Any attempted assignment or transfer in violation of this Section 13.9 will be void.  Any permitted assignee shall assume all assigned obligations of its assignor under this Agreement. The terms and conditions of this Agreement shall inure to the benefit of, and be binding upon, the legal representatives, successors and permitted assigns of the parties.

 

13.10                  Change of Control .  Notwithstanding anything to the contrary herein, (i) no Know-How, Materials, Compounds, Patents or other intellectual property rights not owned or controlled by a party or any of its Affiliates before a Change of Control will be Controlled for purposes of this Agreement after such Change of Control, other than (1) Program IP no matter when Controlled (other than Ra Core Technology or any improvements thereto), and (2) any Patent that claims priority, directly or indirectly, to any other Patent first so Controlled by a party or any of its Affiliates before such Change of Control will be Controlled thereafter no matter when such Patent is filed or issued, and (ii) no assets of Ra or any of its Affiliates, including the items listed in clause (i) above, not owned or in-licensed by Ra or any of its Affiliates before a Change of Control will be subject to Section 2.5(a).

 

42



 

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13.11                  Notices .  All notices, requests, demands and other communications required or permitted to be given pursuant to this Agreement will be in writing and will be deemed to have been duly given upon the date of receipt if delivered by hand, recognized international overnight courier, confirmed facsimile transmission, or registered or certified mail, return receipt requested, postage prepaid to the following addresses or facsimile numbers:

 

If to Ra:

Ra Pharmaceuticals, Inc.

 

One Kendall Square

 

Suite B14301

 

Cambridge, MA 02139

 

Attention: CEO

 

Facsimile:617-401-4060

 

 

With a copy to:

Goodwin Procter LLP

 

53 State Street

 

Boston, MA 02109

 

Attention: Kingsley L. Taft, Esq.

 

Facsimile: 617-523-1231

 

 

If to Merck:

Merck Sharp & Dohme Corp.

 

[ *** ]

 

 

With a copy to:

Merck Sharp & Dohme Corp.

 

[ *** ]

 

Either party may change its designated address and facsimile number by notice to the other party in the manner provided in this Section 13.11.

 

13.12                  Amendment and Waiver .  This Agreement may be amended or modified only by means of a written instrument signed by both parties.  The waiver by either party hereto of any right hereunder, or of any failure of the other party to perform, or of any breach by the other party, will only be effective if expressly made in writing.  Any waiver of any rights or failure to act in a specific instance will relate only to such instance and will not be construed as an agreement to waive any rights or failure to act in any other instance, whether or not similar.

 

13.13                  Severability .  In the event that any provision of this Agreement will, for any reason, be held to be invalid or unenforceable in any respect, such invalidity or unenforceability will not affect any other provision hereof, and the parties will negotiate in good faith to modify this Agreement to preserve (to the extent possible) their original intent.

 

13.14                  Entire Agreement .  This Agreement is the sole agreement with respect to the subject matter and supersedes all other agreements and understandings between the parties with respect to the

 

43



 

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same subject matter.  The Exhibits to this Agreement are expressly incorporated herein by reference and will be deemed a part of this Agreement.

 

13.15                  Force Majeure .  Failure of any party to perform its obligations under this Agreement (except the obligation to make payments when properly due) will not subject such party to any liability or place them in breach of any term or condition of this Agreement to the other party to the extent (and only to the extent) that such failure is due to fire, explosion, flood, drought, war, terrorism, riot, sabotage, embargo, strikes or other labor trouble, failure of suppliers, a national health emergency, compliance with any order or regulation of any government entity acting with color of right, or any other cause beyond the reasonable control of such non-performing party and which is not caused by the negligence, intentional conduct or misconduct of the non-performing party (each such event or cause referred to as “ force majeure ”).  The party affected will promptly notify the other party of the condition constituting force majeure as defined herein and will exert reasonable diligent efforts to eliminate, cure or overcome any such event of force majeure and to resume performance of its obligations with all possible speed.  If a condition constituting force majeure as defined herein exists for more than ninety (90) consecutive days, the parties will meet to negotiate a mutually satisfactory resolution to the problem, if practicable.  The foregoing notwithstanding, nothing herein will require any party to settle on terms unsatisfactory to such party any strike, lock-out or other labor difficulty, any investigation or proceeding by any public authority or any litigation by any Third Party.

 

13.16                  Further Actions .  Each party hereby agrees to execute, acknowledge and deliver such further instruments, and to do all other ministerial, administrative and similar acts, as may be necessary or appropriate in order to carry out the purposes and intent of this Agreement including any filings with any government antitrust agency which may be required.

 

13.17                  Expenses .  Except as otherwise specifically provided in this Agreement, each party (and its Affiliates) will bear its own costs and expenses in connection with entering into this Agreement and the consummation of the transactions and performance of its obligations contemplated hereby.

 

13.18                  Cumulative Remedies .  No remedy referred to in this Agreement is intended to be exclusive, but each will be cumulative and in addition to any other remedy referred to in this Agreement or otherwise available under law.

 

13.19                  Business Day Requirements .  In the event that any notice or other action or omission is required to be taken by a party under this Agreement on a day that is not a business day then such notice or other action or omission will be deemed to be required to be taken on the next occurring business day.

 

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IN WITNESS WHEREOF, the parties have caused this Collaboration and License Agreement to be executed by their respective duly authorized officers as of the Effective Date.

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

By:

/s/ Douglas A. Treco

 

 

(Signature)

 

Name:

Douglas A. Treco

 

Title:

President and CEO

 

 

 

 

 

 

 

MERCK SHARP & DOHME CORP.

 

 

 

 

 

By:

/s/ Roger J. Pomerantz

 

 

(Signature)

 

Name:

Roger J. Pomerantz, M.D., F.A.C.P.

 

Title:

SVP WW Licensing & Acquisitions and Knowledge Management

 

 



 

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Exhibit 1.19

 

General Hit Class of Interest Criteria Applicable to All Initial Program Targets

 

[ *** ]

 



 

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Exhibit 1.43

 

General Progressable Lead Class Criteria across all Program Targets

 

1.               [ *** ]

 


 

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Exhibit 1.48

 

Patents Within Ra Core Technology as of the Effective Date

 

Appln Number

 

Patent Number

 

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Title

 

Filing Date

 

Issue Date

 

Lead
Inventor

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Appln Number

 

Patent Number

 

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Title

 

Filing Date

 

Issue Date

 

Lead
Inventor

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[ *** ]

 

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

 

[ *** ]

 

[ *** ]

 

[ *** ]

 

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Exhibit 2.1(b)

 

High Level Research Operating Plan

 

Background :

 

Protein-Protein interactions play an important role in many biological processes, and thus modulating their function can create many opportunities to generate novel therapeutics and tools for drug discovery. Despite the opportunity, however, the identification of small molecule modulators of their activity in vivo remains a challenge. The primary reason for the low success rate appears to be the lack of ability for a traditional small molecule to achieve productive interactions with a protein interface while simultaneously maintaining properties compatible with bioavailability. To answer this challenge, several external companies and academics are creating or have created libraries and know-how in areas of chemical space that hold promise of achieving both. Some of these efforts have shown initial successes.

 

A.  Purpose

 

The purpose of the proposed collaboration is two-fold:

 

[ *** ] .

 

The Collaborator’s Principal Contact will be:

 

[ *** ]

 

The MERCK Contact will be:

 

[ *** ]

 

B.  Material

 

Merck will provide sufficient amounts of protein for each of the Program Targets, other non-commercial materials (including biological targets of the Program Targets and specialized assay reagents), and assay protocols if needed by Collaborator to conduct assays required to satisfy the Research Operating Plan (ROP) and meet any of the criteria laid out in this Agreement. Certain assays in the ROP may be proprietary to Merck and will be conducted by Merck as part of Merck’s evaluation of candidate compounds for the Progressable Lead Class.

 

C. Work

 

Merck and Collaborator will jointly conduct a series of research programs using Ra Core Technology to identify novel lead or tool candidates for Program Targets. The work will be carried out in [ *** ]

 



 

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[ *** ]

 



 

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Exhibit 3.2(a)

 

Form of Confidentiality Commitment Letter

 

The undersigned consultant/contractor (“ Contractor ”) has been engaged by [ insert name of Merck or Ra entity as applicable ] (“ Company ”) to provide certain consulting or other services (the “ Services ”) for Company related to or in connection with the performance by Company of one or more activities for the Research Collaboration being performed under the terms of a Collaboration and License Agreement, dated April 1, 2013 (the “ Collaboration Agreement ”), by and between Merck Sharp & Dohme Corp. (“MSD”) and Ra Pharmaceuticals, Inc. (“ Ra ”).

 

In connection with the performance of the Services, the Contractor may receive or be provided access to proprietary or confidential data, materials, know-how or information belonging to MSD or Ra related to the Collaboration Agreement or the Research Collaboration, as defined in the Collaboration Agreement (hereinafter, the “ Collaboration Information ”).  Collaboration Information will include, without limitation, any and all data and information (whether disclosed in writing, verbally or visually) related to MSD’s or Ra’s proprietary compounds or pharmaceutical products, related research and development programs, the contents of the Research Operating Plan (as defined in the Collaboration Agreement) or related study protocols for the Research Collaboration, the status of efforts under the Research Operating Plan, or data, information and results of work under the Research Operating Plan, or the existence and subject matter of the Collaboration Agreement or the terms and conditions thereof.

 

By signing below, the Contractor hereby acknowledges and agrees as follows:

 

1                                          the Collaboration Information is and will remain the property of, as applicable, MSD or Ra;

 

2                                          Contractor will only use the Collaboration Information as necessary to perform the Services and will not use the Collaboration Information for any other purpose;

 

3                                          Contractor will only disclose or make available the Collaboration Information to those employees of Contractor who are directly involved with the performance of the Services; and

 

4                                          the Collaboration Information will be maintained by Contractor as confidential in the same manner and subject to the same terms and conditions that govern the protection of Company’s confidential information under the agreement(s) between Contractor and Company related to the performance of the Services.

 

The foregoing is understood and agreed to by Contractor as of the date written below.

 

 

By:

 

 

Date:

 

 

 

 

 

Name:

 

 

 

 

 

Title:

 

 

 



 

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Exhibit 6.2(a)(iii)

 

Ra FTE Report

 

Each report will include, without limitation, the following:

 

(1)                                  The actual number of FTEs (in whole or in part) who worked on the Research Collaboration during each whole or partial calendar quarter of the relevant year of the Research Term;

 

(2)                                  The amount of time each FTE devoted to the Research Collaboration; and

 

(3)                                  Brief description of the work performed by each such FTE.

 



 

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Exhibit 6.5(a)

 

Wire Transfer Instructions

 

[ *** ]

WIRE TRANSFER INSTRUCTIONS

 

BENEFICIARY BANK:

[ *** ]

BENEFICIARY BANK ADDRESS:

[ *** ]

 

 

ROUTING & TRANSIT#:

[ *** ]

SWIFT CODE

[ *** ]

BENEFICIARY NAME:

[ *** ]

BENEFICIARY ADDRESS:

[ *** ]

 

[ *** ]

BENEFICIARY ACCOUNT#:

[ *** ]

BY ORDER OF:

[NAME OF SENDER]

 

IMPORTANT!!!!

 

Wire instructions MUST designate the FULL TEN DIGIT ACCOUNT NUMBER. Wires received by [ *** ] with INCOMPLETE or INVALID ACCOUNT NUMBERS may be delayed and could possibly require return to the sending bank due to new regulations.

 



 

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Exhibit 10.2(c)

Press Release

 

Ra Pharmaceuticals Announces Broad Collaboration with Merck to Develop Cyclomimetics™

 

—Ra Pharma™ Eligible to Receive Up to $200M—

 

Cambridge, MA, April 1, 2013 — Ra Pharmaceuticals today announced it has entered into a collaboration with Merck, known as MSD outside the United States and Canada, focused on the development of Cyclomimetics™, a new class of compounds that have the diversity and specificity of antibodies while retaining the attributes of small molecules. Under the agreement, Ra Pharmaceuticals will use its proprietary Extreme Diversity™ platform to develop Cyclomimetic candidates for protein targets in multiple therapeutic areas.

 

“Cyclomimetics have novel properties that enable the targeting of protein-protein interactions, a property sought after for a wide range of disease indications,” said Doug Treco, Ph.D., Co-Founder, President and CEO, Ra Pharmaceuticals. “The collaboration with Merck highlights the broad potential of our Extreme Diversity platform and provides us with the resources to strengthen and advance our core technology.”

 

“This agreement with Ra Pharmaceuticals underscores our strategy of collaborating with scientists who have developed innovative new technologies with the potential to complement and enhance our original research and product portfolio,” said Richard Tillyer, Ph.D., Head of Drug Discovery and Preclinical Sciences, Merck Research Laboratories.

 

Under the terms of the agreement, Ra Pharmaceuticals is eligible to receive up to $200 million in payments, including up-front and research funding, as well as upon the achievement of discovery, development, regulatory and commercialization milestones for multiple targets.

 

About Cyclomimetics

 

Cyclomimetics are peptide-like molecules characterized by their cyclic structure and backbone and side-chain modifications that provide unique, beneficial properties not found in natural peptides. The result is a highly specific and stable molecule with improved cell permeability and the potential for greatly increased bioavailability.

 

Cyclomimetics are generated using the Company’s proprietary Extreme Diversity™ platform. The platform is unique in that it combines in vitro display technology, a completely defined translation system and a wide variety of non-natural amino acids. Unlike certain other display technologies, in vitro display does not require the use of a bacterial or yeast host, and it can produce libraries of 10 to 100 trillion members. Further, the technology has the potential to address protein-protein interactions and other previously undruggable targets.

 



 

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About Ra Pharmaceuticals

 

Ra Pharma™ is leveraging its ability to rapidly generate drug candidates to develop its own portfolio of products and partnerships focused on intracellular protein-protein interactions and other innovative approaches for addressing unmet medical needs. For more information, please visit: www.rapharma.com.

 

Ra Pharma was incorporated in 2008 and secured a $27M Series A in February of 2010 led by New Enterprise Associates with Morgenthaler Ventures, Novartis Venture Funds and Amgen Ventures participating.

 

Contact

 

MacDougall Biomedical Communications

Michelle Avery

781-235-3060

 



 

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Exhibit 13.1

 

Arbitration Proceedings

 

1.                                       The arbitration will be conducted by a panel of three (3) persons experienced in the pharmaceutical business.  Within thirty (30) days after initiation of an arbitration, each party will select one person to act as arbitrator and the two party-selected arbitrators will select a third arbitrator within thirty (30) days of their appointment.  If the arbitrators selected by the parties are unable or fail to agree upon the third arbitrator, the third arbitrator will be appointed by the AAA.  The place of arbitration will be New York, New York, and all proceedings and communications will be in English.

 

2.                                       Either party may apply to the arbitrators for interim injunctive relief until the arbitration award is rendered or the controversy is otherwise resolved.  Either party also may, without waiving any remedy under this Agreement, seek from any court having jurisdiction any injunctive or provisional relief necessary to protect the rights or property of that party pending the arbitration award.  The arbitrators will have no authority to award any damages excluded by Section 11.4.  Each party will bear its own costs and expenses and attorneys’ fees and an equal share of the arbitrators’ fees and any administrative fees of arbitration.

 

3.                                       Except to the extent necessary to confirm an award or as may be required by law, neither a party nor an arbitrator may disclose the existence, content, or results of an arbitration without the prior written consent of both parties.  In no event will an arbitration be initiated after the date when commencement of a legal or equitable proceeding based on the dispute, controversy or claim would be barred by the applicable New York statute of limitations.

 

4.                                       The parties agree that, in the event of a good faith dispute over the nature or quality of performance under this Agreement, neither party may unilaterally terminate this Agreement until final resolution of the dispute through arbitration or other judicial determination (plus any applicable cure period applicable thereto during which either party may seek to cure any alleged or determined breach).  The parties further agree that any payments made pursuant to this Agreement pending resolution of the dispute will be refunded if an arbitrator or court determines that such payments are not due.

 

5.                                       During the pendency of any arbitration the parties will continue to perform their respective obligations under this Agreement.  To the extent that such performance involves any matter which is the subject of the dispute, claim or controversy being arbitrated, the parties will continue performance of such matter under this Agreement in such a manner as to the fullest extent possible maintain the status quo of the parties with respect to the disputed matter.

 


 

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AMENDMENT TO COLLABORATION AND LICENSE AGREEMENT

 

By and Between

 

RA PHARMACEUTICALS, INC.

 

AND

 

MERCK SHARP & DOHME CORP.

 

Dated as of November 25, 2013

 

 



 

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AMENDMENT TO COLLABORATION AND LICENSE AGREEMENT

 

This Amendment ( “Amendment ”) effective as of November 27, 2013, to the Collaboration and License Agreement by and between Ra Pharmaceuticals, Inc. (“Ra”) and Merck Sharp & Dohme Corp. (“Merck”) dated April 1, 2013 (“Agreement”), is entered into by and between Ra and Merck.

 

WHEREAS, Merck and Ra wish to modify the Agreement in order to allow for chemical structures of Compounds for the Program Target [ *** ] .

 

NOW, THEREFORE, in consideration of the premises and mutual covenants contained herein and for other good and valuable consideration, the receipt and adequacy of which are hereby acknowledged, the parties hereto agree as follows:

 

1.                         Capitalized terms used but not otherwise defined in this Amendment shall have the respective meanings assigned to such terms in the Agreement.

 

2.                         Section 2.2(e) of the Agreement is hereby amended and modified by deleting the existing provision in its entirety and replacing it with the following language:

 

“Chemical Structures. [ *** ].

 

3.                         From and after the date of this Amendment, all references to the Agreement shall be deemed to be references to the Agreement as amended.

 

4.                         No amendment or modifications of this Amendment will be binding upon the parties unless set forth in a writing specified to be an explicit amendment to this Amendment duly executed by authorized representatives of each of the parties hereto.

 

5.                         This Amendment may be executed in two or more counterparts (including by means of telecopied signature pages), each of which will be deemed an original, but all of which together will constitute one and the same instrument.

 



 

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IN WITNESS WHEREOF, the parties hereto have caused this Amendment to be signed by their respective representatives thereunto duly authorized, all as of the date first written above.

 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

 

 

By:

/s/ Douglas A. Treco

 

 

 

 

 

Name:

Douglas A. Treco

 

 

 

 

 

 

Title:

President & CEO

 

 

 

 

 

 

 

MERCK SHARP & DOHME CORP.

 

 

 

 

 

 

By:

/s/ Iain Dukes

 

 

 

 

 

Name:

Ian Dukes, D. Phil.

 

 

 

 

 

 

Title:

Senior Vice President

 

 

 

Business Development & Licensing

 



 

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October 3, 2014

 

Via facsimile: [ *** ]

 

Merck Sharp & Dohme Corp.
351 North Sumneytown Pike
Mailstop UG4CD-16
North Wales, PA 19454

Attn:  Iain D. Dukes MA, DPhil
Senior Vice President, Business Development & Licensing

Reference: [ *** ]

 

Re:

Target substitution under the Collaboration and License Agreement by and between Ra Pharmaceuticals, Inc. (“Ra”) and Merck Sharp & Dohme Corp. (“Merck”), dated April 1,2013 (the “Agreement”)

 

Dear Dr. Dukes:

 

On September 26. 2014, Merck informed Ra that it wishes to substitute a new target, [ *** ] , for one of the three Program Targets currently in the Research Collaboration (specifically, [ *** ]). In doing so, Merck is exercising its rights under section 2.1 (c) of the Agreement.

 

The timeframe during which Program Target substitution may occur is stipulated in Sections 2.1(c)(i)(B)(2) and 2.1(a) of the Agreement, respectively:

 

[ *** ]

 

Since no changes have been made to the Research Term, the end date for the Research Term is April 1, 2015. Thus, Merck must make the substitution for a new Program Target by no later than October 1, 2014.

 

Letter Amendment to the Collaboration and License Agreement

 

CONFIDENTIAL

 



 

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In addition, Merck’s proposed target, [ *** ] :

 

“The nomination by Merck of a new protein target as a new Program Target pursuant to this Section 2.1(c) is subject to (a)  [ *** ] (b) the JSC, acting in good faith, agreeing on a Research Operating Plan, Hit Class of Interest Criteria and Progressable Lead Class Criteria for such new Program Target, and (c) the ability of Merck to timely provide any Materials required to perform such Research Operating Plan; if any of the foregoing ((a) through (c)) is not satisfied, then such new protein target so nominated by Merck will not become a new Program Target hereunder. [ *** ].

 

Ra is willing to discuss the proposed target substitution on revised economic terms. Since the parties have not begun discussions, [ *** ] , and is willing to allow the parties to negotiate revised economic terms under the following conditions:

 

[ *** ] .

 

Capitalized terms used, but not defined, in this letter amendment shall have the meanings ascribed thereto in the Agreement. This letter amendment relates only to the specific matters expressly covered herein, and in all other respects, the Agreement will remain in full force and effect in accordance with its terms.

 



 

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If you are in agreement with the foregoing, please sign below:

 

 

Ra Pharmaceuticals, Inc.

 

Merck Sharp & Dohme Corp.

 

 

 

By:

/s/ Douglas A. Treco

 

By:

/s/ Ian D. Duke

Name:

Douglas A. Treco, PhD

 

Name:

Iain D. Dukes MA, DPhil

Title:

President and CEO

 

Title:

Senior Vice President, Business Development & Licensing

 


 

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SECOND AMENDMENT TO COLLABORATION AND LICENSE AGREEMENT

 

By and Between

 

RA PHARMACEUTICALS, INC.

 

AND

 

MERCK SHARP & DOHME CORP.

 

Dated as of October 24,2014

 

 



 

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SECOND AMENDMENT TO COLLABORATION AND LICENSE AGREEMENT

 

This Second Amendment (“ Amendment ”), effective as of October 24, 2014, to the Collaboration and License Agreement by and between Ra Pharmaceuticals, Inc. (“Ra”) and Merck Sharp & Dohme Corp. (“Merck”) dated April 1, 2013, as amended on November 27, 2013 (collectively the “Agreement”), is entered into by and between Ra and Merck.

 

WHEREAS, Merck and Ra wish to modify the Agreement in order to allow for chemical structures of Compounds for the Program Target [ *** ] .

 

NOW, THEREFORE, in consideration of the premises and mutual covenants contained herein and for other good and valuable consideration, the receipt and adequacy of which are hereby acknowledged, the parties hereto agree as follows:

 

1.                         Capitalized terms used but not otherwise defined in this Amendment shall have the respective meanings assigned to such terms in the Agreement.

 

2.                         Section 2.2(e) of the Agreement is hereby amended and modified by deleting the existing provision in its entirety and replacing it with the following language:

 

“Chemical Structures. The parties hereby agree that the chemical structures of Compounds for the Program Target [ *** ].

 

3.                         Section 13.11 of the Agreement is hereby amended and modified by deleting the Merck information contained therein and replacing it with the following:

 

“If to Merck:                                                                         Merck Sharp & Dohme Corp.
[ *** ]

 

With a copy to:                                                             Merck Sharp & Dohme Corp.
[ *** ]

 

2



 

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4.                         From and after the date of this Amendment, all references to the Agreement shall be deemed to be references to the Agreement as amended.

 

5.                         No amendment or modifications of this Amendment will be binding upon the parties unless set forth in a writing specified to be an explicit amendment to this Amendment duly executed by authorized representatives of each of the parties hereto.

 

6.                         This Amendment may be executed in two or more counterparts (including by means of telecopied signature pages), each of which will be deemed an original, but all of which together will constitute one and the same instrument.

 

IN WITNESS WHEREOF, the parties hereto have caused this Second Amendment to be signed by their respective representatives thereunto duly authorized, all as of the date first written above.

 

 

RA PHARMACEUTICALS, INC.

 

 

 

 

 

 

 

By:

/s/ Douglas. A. Treco

 

 

 

 

 

Name:

Douglas A. Treco

 

 

 

 

 

 

Title:

President & CEO

 

 

 

 

 

 

 

MERCK SHARP & DOHME CORP.

 

 

 

 

 

 

By:

/s/ Ian Dukes

 

 

 

 

 

Name:

Iain Dukes, D. Phil.

 

 

 

 

 

 

Title:

Senior Vice President

 

 

 

Business Development & Licensing

 

3



 

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April 21, 2015

 

Via facsimile to [ *** ] and e-mail to [ *** ]

 

Merck Sharp & Dohme Corp.
2015 Galloping Hill Road
K15-3F-352
Kenilworth, NJ 07033

 

Attn:                     [ *** ]
Vice President, Head of Business Development Transactions, Merck Research Laboratories

 

Re:                              Research Term Extension and Amendment of the Collaboration and License Agreement by and between Ra Pharmaceuticals, Inc. (“ Ra ”) and Merck Sharp & Dohme Corp. (“ Merck ”) , dated April 1, 2013, as amended October 3, 2014 and October 24,2014 (collectively, the “ Agreement ”)

 

Dear [ *** ] :

 

At this time, Ra and Merck agree that the Research Term set forth in Section 2.1(a) of the Agreement is extended for an additional period of (i) one (1) year for the Program Target [ *** ] ending on the third (3 rd ) anniversary (April 1, 2016); and (ii) two (2) years for the Program Target [ *** ], ending on the fourth (4 th ) anniversary (April 1, 2017) of the Effective Date, respectively, unless extended or earlier terminated pursuant to the Agreement.

 

The parties further agree that FTE Rate set forth in Section 1.16 in the Agreement (currently $ [ *** ] /FTE-year) is adjusted to $[ *** ]/FTE-year for the one (1) year period starting April 1, 2015, and adjusted annually [ *** ].

 

The parties agree that the last sentence of Section 2.2(e) of the Agreement is revised to reflect that “With respect to the chemical structures of Compounds for the Program Targets other than Program Target [ *** ].

 

The parties agree that Section 6.2(a)(i) of the Agreement is revised to reflect that there will be at least [ *** ] FTE for each Program Target and not more than [ *** ]FTEs for

 

Letter Amendment to the Collaboration and License Agreement

 

CONFIDENTIAL

 

1



 

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the collective Program Targets that are part of the Research Collaboration for the one (1) year period ending April 1, 2016, and there will be at least [ *** ] and not more than [ *** ] FTEs for the Program Target [ *** ] for the one (1) year period starting April I, 2016 and ending April 1, 2017, subject to a revised Research Operating Plan that includes recommendations of the JSC.

 

The parties agree that the Preclinical Development Milestones set forth in Section 6.3(a) of the Agreement are deleted in their entirety and replaced with the following table:

 

Milestone Event

 

Milestone Payment

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

[ *** ]

 

[ *** ]

 

Capitalized terms used but not defined in this letter amendment shall have the meanings ascribed thereto in the Agreement. This letter amendment relates only to the specific matters expressly covered herein, and in all other respects, the Agreement will remain in full force and effect in accordance with its terms.

 

If you are in agreement with the foregoing, please sign and date below:

 

Ra Pharmaceuticals, Inc.

 

Merck Sharp & Dohme Corp.

 

 

 

By:

/s/ Douglas A. Treco

 

By:

/s/ Joanne M. Smith-Farrell

Name:

Douglas A. Treco, PhD

 

Name:

Joanne M. Smith-Farrell, Ph.D.

Title:

President and CEO

 

Title:

[ *** ]

Date:

April 21, 2015

 

Date:

4/22/15

 

2



 

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Cc:                              [ *** ]

 

3




Exhibit 10.12

 

CONFIDENTIAL

 

EXCLUSIVE LICENSE AGREEMENT

 

by and between

 

Anthony C. Forster, M.D., Ph.D.
an individual

 

and

 

Ra Pharmaceuticals, Inc.
a Delaware
corporation

 



 

EXCLUSIVE LICENSE AGREEMENT

 

Version of 2010/10/18

 

This Exclusive License Agreement (this “ Agreement ”) is effective as of November 29, 2010 (the “ Effective Date ”), by and between Anthony C. Forster, M.D., Ph.D., an individual located at 357 Childe Harold’s Circle, Brentwood, TN 37027 (“ Forster ”), and Ra Pharmaceuticals, Inc., a Delaware corporation located at 222 Berkeley Street, 20 th  Floor, Boston MA 02116 (“Ra”). Forster and Ra are each sometimes referred to herein as a “ Party ” or collectively as the “ Parties .”

 

RECITALS

 

WHEREAS, Forster is the owner of certain Patent Rights and has the exclusive right to grant licenses under said Patent Rights, subject only to (i) a royalty-free, irrevocable, nonexclusive, license to practice the inventions claimed in the Patent Rights for or on behalf of United States throughout the world; and (ii) The Brigham and Women’s Hospital, Inc.’s continuing right to use any invention described and/or claimed in the Patent Rights for clinical, educational and research purposes;

 

WHEREAS, Forster has an obligation to pay a portion of all consideration received under this Agreement to Dr. Stephen C. Blacklow (“ Blacklow ”) as required under certain Assignment, dated November 17, 2000 (the “ Blacklow Assignment ”), pursuant to which Blacklow assigned all of Blacklow’s rights under the Patent Rights to Forster;

 

WHEREAS, Forster and Ra entered into that certain Exclusive Option Letter Agreement, dated July 13, 2009 (the “ Option Agreement ”), pursuant to which Forster granted Ra an exclusive first option to enter into a worldwide, exclusive license to Forster’s interest in the Patent Rights (the “ Option ”); and

 

WHEREAS, Ra has exercised the Option and desires to obtain the exclusive license under the Patent Rights upon the terms and conditions set forth in this Agreement, and Forster is willing to grant a license thereunder.

 

NOW, THEREFORE, in consideration of the foregoing premises, Forster and Ra hereby agree as follows:

 

ARTICLE 1
DEFINITIONS

 

1.1                                Affiliate ” shall mean any entity which directly or indirectly controls, or is controlled by, or is under common control with, Ra. The term “control” as used herein means (a) in the case of corporate entities, direct or indirect ownership of at least fifty percent (50%) of the stock or shares entitled to vote for the election of directors; or (b) with the power to direct the management and policies of such entities.

 

1.2                                Combination Product ” shall mean any Licensed Product sold or used in combination with one or more other products or processes which are not Licensed Products.

 

1.3                                Field ” shall mean all fields.

 

1.4                                Licensed Processes ” shall mean the processes claimed by Valid Claims in the Patent Rights.

 

1.5                                Licensed Product ” shall mean (i) any product the import, manufacture, use, offer for sale or sale of which, but for the licenses granted herein, would infringe a Valid Claim of the Patent Rights or (ii) any product made or used in accordance with or by means of Licensed Processes.

 



 

1.6                                Net Sales ” shall mean the gross amount billed or invoiced by Ra and its Affiliates and Sublicensees for sales or other transfers of Licensed Product to a final customer who shall be an end user of the Licensed Product, less the following:

 

(a)                                  customary trade, quantity, or cash discounts to the extent actually allowed and taken;

 

(b)                                  amounts repaid or credited by reason of rejection or return;

 

(c)                                   to the extent separately stated on purchase orders, invoices, or other documents of sale, any taxes and/or other governmental charges levied on the production, sale, transportation, delivery or use of a Licensed Product which is paid by or on behalf of Ra; and

 

(d)                                  outbound transportation costs prepaid or allowed and costs of insurance in transit.

 

For the avoidance of doubt, transfers of a Licensed Product between any of Ra, an Affiliate or a Sublicensee for sale by the transferee shall not be considered Net Sales hereunder.

 

In the event that a Licensed Product is sold as a Combination Product, Net Sales, for the purposes of determining royalty payments on the Combination Product, shall mean the gross amount collected for the Combination Product less the deductions set forth in clauses (a) - (d) above, multiplied by a proration factor that is determined as follows:

 

(i)                                      If all components of the Combination Product were sold separately during the same or immediately preceding calendar year, the proration factor shall be determined In the formula [A / (A+B)], where A is the average gross sales price of all Licensed Product components (as applicable) during such period when sold separately from the other component(s), and B is the average gross sales price of the other component(s) during such period when sold separately from the Licensed Product components (as applicable); or

 

(ii)                                   If all components of the Combination Product were not sold or provided separately during the same or immediately preceding calendar year, the proration factor shall be determined by the Parties in good faith negotiations based on the relative value contributed by each component.

 

1.7                                Patent Rights ” shall mean:

 

(a)                                  the United States and international patents listed on Exhibit A;

 

(b)                                  the Canadian and Japanese patent applications listed on Exhibit A;

 

(c)                                   any divisionals, continuations, and continued prosecution applications (or their relevant international equivalents) of the Canadian and Japanese patent applications listed on Exhibit A the extent the claims are directed to subject matter specifically described in the Canadian and Japanese patent applications listed on Exhibit A, and the resulting patents; and

 

(d)                                  any patents resulting from reissues, reexaminations, or extensions (and their relevant international equivalents, including, without limitation supplementary protection certificates) of the patents described in clauses (a), (b) and (c) above.

 

1.8                                Sublicensee ” shall mean any non-Affiliate sublicensee of the rights granted by Ra pursuant to Section 2.2.

 

1.9                                Term ” shall mean the term of this Agreement, which shall commence on the Effective Date and shall remain in effect until the expiration or abandonment of all issued patents and pending

 

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patent applications with the Patent Rights, unless earlier terminated in accordance with the provisions of this Agreement.

 

1.10                         Territory ” shall mean worldwide

 

1.11                         Valid Claim ” shall mean (a) a claim of an issued and unexpired patent which has not been revoked or held unenforceable or invalid by a decision of a court or other governmental agency of competent jurisdiction, unappealable or unappealed within the time allowed for appeal, and which has not been admitted to be invalid or unenforceable through reissue or disclaimer or otherwise, or (b) a claim of a pending patent application that was filed and has been prosecuted in good faith and has not been (i) cancelled, withdrawn, abandoned or finally disallowed without the possibility of appeal or refiling of such application, or (ii) pending for more than twenty (20) years since such claim was first presented.

 

ARTICLE 2
GRANT OF RIGHTS

 

2.1                                License Grants .

 

(a)                                  Subject to the terms and conditions of this Agreement. Forster hereby grants to Ra and its Affiliates, and Ra accepts subject to the terms and conditions hereof, for the Term an exclusive license, with the right to sublicense, under the Patent Rights, to make, have made. use. have used, sell, have sold, offer to sell, have offered for sale, import, have imported, develop and commercialize Licensed Products and to practice the Licensed Processes in the Field in the Territory.

 

(b)                                  Forster acknowledges and agrees that, during the Term, it shall not directly or indirectly grant any licenses or other rights inconsistent with this Section 2.1.

 

2.2                                Sublicenses . Ra shall have the right to grant sublicenses of the rights and licenses granted to Ra hereunder. Ra shall incorporate terms and conditions into its sublicense agreements sufficient to enable Ra to comply with this Agreement. Ra shall promptly furnish Forster with a fully signed photocopy of any sublicense agreement. Any such sublicense agreement shall provide that upon termination of this Agreement, that such sublicense agreement shall provide for termination or assignment to Forster at the option of Forster of Ra*s interest therein, except that, upon termination of this Agreement for any reason, provided that a Sublicensee is not in material breach of its sublicense, at such Sublicensee’s request, Forster shall grant to such Sublicensee license rights and terms equivalent to the sublicense rights and terms which Ra previously granted to such Sublicensee, provided that such Sublicensee agrees to make future payments under Sections 4. L 4.2, 4.4, 4.5 and 4.6 resulting from such license that Ra would have been obligated to make to Forster hereunder.

 

2.3                                Retained Rights .

 

(a)                                  Forster shall retain the non-exclusive, non-transferable right for itself to practice the Patent Rights for non-commercial research; provided that such right does not include the right to practice the Patent Rights on behalf of any commercial third party, Forster shall provide prompt written notice to Ra of any inventions that rely on the use or practice of the Patent Rights pursuant to this Section 2.3(a), provided that this does not jeopardize patent protection of the new invention or violate the policy of Forster’s current employer.

 

(b)                                  Ra acknowledges that the U.S. Government retains a world-w ide, nonexclusive, irrevocable, royalty-free license to practice or have practiced for or on behalf of the United States any government-funded invention claimed in any Patent Rights as set forth in 35 U.S.C. §§ 200 et seq., and the regulations promulgated (hereunder, as amended, or any successor

 

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statutes or regulations. All rights reserved to the U.S. government shall in no way be affected by this Agreement.

 

(c)                                   Ra acknowledges that Brigham and Women’s Hospital retains a continuing right to use any invention described and/or claimed in the Patent Rights for clinical, educational and research purposes.

 

2.4                                Other Materials and Know-How . horsier will identify to Ra chemicals and other materials, equipment and know-how that are not owned or controlled by the Brigham and Women’s Hospital useful for the practice of the Patent Rights and will provide reasonable consultation with respect thereto separate and apart from any role Forster has with Ra. including as a member of Ra’s Scientific Advisory Board pursuant to Section 3.2.

 

2.5                                No Additional Rights . Nothing in this Agreement shall be construed to confer any rights upon Ra by implication, estoppel, or otherwise as to patent rights of Forster other than the Patent Rights.

 

ARTICLE 3
DILIGENCE OBLIGATIONS

 

3.1                                Due Diligence . Ra will use. or cause its Affiliates or Sublicensees to use. commercially reasonable efforts to research, develop and commercialize the Patent Rights or at least one Licensed Product, exerting such efforts and employing such resources as would normally be exerted or employed by a similarly situated company for a product of similar market potential, profit potential and strategic value at a similar stage of its product life, taking into account the competitiveness of the relevant marketplace, the patent, intellectual property and development positions of third parties, the applicable regulatory situation, the commercial viability of the product and other relevant development and commercialization factors based upon then-prevailing conditions.

 

3.2                                Scientific Advisory Board . Promptly following the Effective Date. Ra shall offer Forster a position on Ra’s Scientific Advisory Board under a mutually acceptable agreement, which shall provide compensation of $2,000 per in-person meeting and reimbursement of reasonable travel and accommodation expenses as approved by Ra in writing.

 

ARTICLE 4
ROYALTIES AND PAYMENT TERMS

 

4.1                                License Issue Fee . Ra shall pay to Forster a non-refundable license issue fee of One Hundred Seventy-Three Thousand Five Hundred Forty-Seven U.S. dollars and Fifty cents (U.S. $173,547.50) in the manner prescribed in this Section 4.1. The option fee in the amount of Forty Thousand U.S. dollars (U.S. $40,000) and the Option Term extension fee of Thirty Thousand U.S. dollars (U.S. $30,000) paid by Ra to Forster (or to third parties designated by Forster) under the Option Agreement shall be credited against such One Hundred Seventy-Three Thousand Five Hundred Forty-Seven U.S. dollars and Fifty cents (U.S. $173,547.50) license issue fee, with the remaining One Hundred Three Thousand Five I kindred Forty-Seven U.S. dollars and Fifty cents (U.S. $103,547.50) due within ten (10) days after the Effective Date.

 

4.2                                Annual License Fee . For so long as Ra has an exclusive license under Patent Rights pursuant to Section 2.1 hereinbefore subject however to the rights retained by Forster. Brigham and Women’s Hospital , and the US Government pursuant to Section 2.3 hereinbefore, and beginning on the first anniversary of the Effective Date and continuing each anniversary thereafter until the first commercial sale of a Licensed Product. Ra shall pay to Forster an annual license fee of Fourteen Thousand Eight Hundred Seventy-Five U.S. dollars and Fifty Cents (U.S. $14,875.50) within thirty (30)

 

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days after the applicable anniversary of the Effective Date. Such annual license fee will be fully creditable against royalty payments due and payable in any given year.

 

4.3                                Equity . Subject to approval by Ra’s Board of Directors. Ra shall grant to Forster an option (the “ Forster Stock Option ”) to purchase Fifty Nine Thousand Five Hundred Two (59,502) shares of Common Stock of Ra (the “ Ra Stock ”), at an exercise price equal to the fair market value of the Common Stock as of the date of grant, pursuant to Ra’s 2010 Stock Option and Grant Plan (the “ Plan ’’). The present fair market value is $0.01 per share. The Forster Stock Option will be subject to the terms and conditions applicable to options granted under the Plan, as described in the Plan and the applicable stock option grant agreement. The Ra Stock underlying the Forster Stock Option shall be subject to a vesting schedule with Fourteen Thousand Eight Hundred Seventy-Seven (14,877) shares vested upon grant, and the remainder shall vest during the Term on a straight-line quarterly basis over three (3) years. In the event this Agreement is terminated for any reason other than by Forster pursuant to Section 12.2, all vesting of the Ra Stock shall immediately cease and the Forster Stock Option shall terminate in accordance with the Plan and the applicable stock option grant agreement.

 

4.4                                Running Royalties .

 

(a)                                  For so long as Ra has an exclusive license under Patent Rights pursuant to Section 2.1 hereinbefore subject however to the rights retained by Forster. Brigham and Women’s Hospital, and the US Government pursuant to Section 2.3 hereinbefore, Ra shall pay lo Forster a running royalty equal to 0.25% of Net Sales of Licensed Products sold or transferred by Ra. its Affiliates and Sublicensees (in those countries where such sale or transfer then infringes any Valid Claims contained in the Patent Rights).

 

(b)                                  Running royalties shall be payable on an annual basis and shall be due to Forster within sixty (60) days of the end of each calendar year.

 

(c)                                   On sales of Licensed Products between Ra and its Affiliates and/or Sublicensees for resale, the royalty shall be paid on the resale.

 

(d)                                  To the extent that Ra or any of its Affiliates or Sublicenses obtains licenses to third party patent rights or other intellectual property in order to practice the Patent Rights or to develop or commercialize any Licensed Products. Ra may deduct from any royalty due to Forster hereunder the royalties due according to agreements between Ra (and its Affiliates and Sublicensees, as applicable) and a third party(ies) on such patents or intellectual property up to an amount equal to fifty percent (50%) of the running royalties owed in any calendar year hereunder, with any excess third party royalties carried over into next succeeding calendar year until exhausted. For clarity, Ra agrees that ii will not have the right lo so reduce any royalty payments due to Blacklow under Section 4.5(d).

 

(e)                                   If the manufacture, use or sale of any Licensed Product is covered by more than one of the Patent Rights, multiple royalties shall not be due.

 

(f)                                    The royally obligations of Ra shall continue on a country-by-country basis as to each Licensed Product commencing on the first commercial sale of the applicable Licensed Product and continuing until the expiration or termination of the last to expire of a Valid Claim within Patent Rights that covers such Licensed Product in the applicable country. Upon the termination of Ra’s royalty obligations with respect to a Licensed Product in a country, the license grants contained in Section 2.1 shall become fully paid-up and royalty-free for such Licensed Product in such country .

 

4.5                                Consideration Payable to Blacklow . As a matter of mutual convenience, Ra has agreed to pay Blacklow the following consideration owed by Forster lo Blacklow under the Blacklow Assignment as a result of entering into this Agreement as follows:

 

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(a)                                  Ra shall pay to Blacklow a license issue fee of One Thousand Four Hundred Fifty Two U.S. dollars and Fifty cents (U.S. $1,452.50) within ten (10) days after the Effective Date.

 

(b)                                  Beginning on the first anniversary of the Effective Date and continuing each anniversary thereafter until the first commercial sale of a Licensed Product. Ra shall pay to Blacklow an annual license fee of One Hundred Twenty-Four U.S. dollars and Fifty Cents (U.S. $124.50) within thirty (30) days after the applicable anniversary of the Effective Date.

 

(c)                                   Subject to approval by Ra’s Board of Directors, Ra shall grant to Blacklow an option (the “ Blacklow Stock Option ”) to purchase Four Hundred Ninety Eight (498) shares of Ra Stock, at an exercise price equal to the fair market value of the Common Stock as of the date of grant pursuant to the Plan. The Blacklow Stock Option will be subject to the terms and conditions applicable to options granted under the Plan, as described in the Plan and the applicable stock option grant agreement. Forster acknowledges that Ra intends to obtain a third-party valuation to advise its Board of Directors on the fair market value of its Common Stock, which may delay the grant to Blacklow of the Blacklow Stock Option. The Ra Stock underlying the Blacklow Stock Option shall be subject to a vesting schedule with One Hundred Twenty Three (123) shares vested upon grant, and the remainder shall vest during the Term on a straight-line quarterly basis over three (3) years. In the event this Agreement is terminated for any reason other than by Forster pursuant to Section 12.2, all vesting of the Ra Stock shall immediately cease and the Blacklow Stock Option shall terminate in accordance with the Plan and the applicable stock option grant agreement

 

(d)                                  Ra shall pay to Blacklow a running royalty equal to 0.25% of Net Sales of Licensed Products sold or transfer by Ra. Affiliates and Sublicensees in those countries where such sale or transfer then infringes any Valid Claims contained in the Patent Rights. Running royalties shall be payable on an annual basis and shall be due to Blacklow within sixty (60) days of the end of each calendar year.

 

(e)                                   Forster hereby represents and warrants that the amounts payable to Blacklow in this Section 4.5 shall satisfy in full all consideration owed lo Blacklow under the Blacklow Assignment and all other contractual obligations with Blacklow relating to the Patent Rights. Forster shall provide complete and accurate payment and other instructions to Ra to enable Ra to comply with its payments obligations to Blacklow.

 

4.6                                Buy-Out Right . At any time during the Term of this Agreement, Ra shall have the right and option, in its sole discretion, to terminate all of Ra’s payment obligations owed to Forster, bin not to Blacklow. under this Agreement by paying to Forster an amount equal to Seven Hundred Fifty Thousand U.S. dollars (U.S. $750,000), less a credit for (a) all royalties paid by Ra under this Agreement through the date that Ra exercises its buy-out option; and (b) all annual license fees paid by Ra under this Agreement through the date that Ra exercises its buy-out option that have not previously been credited against royalties payable by Ra.

 

4.7                                Method of Payment . All payments under this Agreement to “Anthony Forster” and “Stephen C. Blacklow” and should be sent to the addresses identified in Section 14.1.

 

4.8                                Payments in U.S. Dollars . All payments due under this Agreement shall be payable in United States dollars. Conversion of foreign currency to U.S. dollars shall be made at the conversion rate existing in the United States (as reported in the Wall Street Journal) on the last working day of the calendar quarter of the applicable calendar year. Such payments shall be without deduction of exchange, collection, or other charges, and, specifically, without deduction of withholding or similar taxes or other government imposed fees or taxes, except as permitted in the definition of Net Sales.

 

4.9                                Late Payments. Late payments shall be subject to an interest charge of one percent (1%) per month.

 

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ARTICLE 5
REPORTS AND RECORDS

 

5.1                                Reports .

 

(a)                                  Ra shall report to Forster the date of first commercial sale of a Licensed Product within sixty (60) days of occurrence in each country.

 

(b)                                  After the first commercial sale of a Licensed Product. Ra shall deliver reports to Forster within sixty (60) days of the end of each calendar year, setting forth at least the information concerning the immediately preceding calendar year, as further described in Section 5.2.

 

5.2                                Content of Reports and Payments . Each report delivered by Ra to Forster shall contain at least the following information for the immediately preceding calendar year:

 

(a)                                  the number of Licensed Products sold by Ra, its Affiliates and Sublicensees to independent third parties in each country;

 

(b)                                  the gross price charged by Ra, its Affiliates and Sublicensees for each Licensed Product sold by Ra, its Affiliates and Sublicensees in each country;

 

(c)                                   calculation of Net Sales for the applicable calendar year in each country, including, without limitation, a listing of applicable deductions; and

 

(d)                                  total royalty payable on Net Sales in U.S. dollars, together with the exchange rates used for conversion.

 

If no amounts are due to Forster for any calendar year, the report shall so state.

 

5.3                                Records . Ra shall maintain, and shall cause its Affiliates and Sublicensees to maintain, complete and accurate records relating to amounts payable to Forster in relation to this Agreement. The relevant entity shall retain such records for at least three (3) years following the end of the calendar year to which they pertain. They shall be available during normal business hours for inspection, at the expense of Forster, by a certified, independent public accountant selected by Forster and reasonably acceptable to Ra for the sole purpose of verifying any reports and payments made or compliance in other respects under this Agreement. In the event that any audit performed under this Section 5.3 reveals an underpayment in excess often percent (10%), Ra shall bear the full out-of-pocket cost of such audit and shall remit any amounts due to Forster within thirty (30) days of receiving notice thereof from Forster.

 

5.4                                Confidentiality . The reports and records provided by Ra hereunder shall be regarded as Ra’s confidential information and Forster hereby covenants that it shall not use or disclose any information included in such reports for any purpose other than determining whether Ra. its Affiliates and Sublicensees have complied with their obligations under this Agreement. Forster further agrees that, until such time as such information is no longer confidential through no fault of Forster. it shall maintain such reports and any information included therein in strict confidence, except as required by law, including Public Law 96-517 and 98-620, and treat such information in a manner at least as restrictive as its manner of treating its own confidential information of similar nature and in any event not less than with a reasonable degree of care.

 

ARTICLE 6
PATENT PROSECUTION

 

6.1                                Responsibility for Patent Rights . Forster hereby appoints Ra as its agent to prepare, file, prosecute, maintain and defend in all agency proceedings (e.g.. reissues, reexaminations, oppositions and interferences) all of the Patent Rights during the Term. Ra shall copy Forster on all patent prosecution documents and give Forster reasonable opportunities to advise Ra on such filing, prosecution and

 

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maintenance. All costs for obtaining, prosecuting, maintaining, and defending the Patent Rights of this license shall be the responsibility of Ra. and any reasonable out-of-pocket expenses incurred by Forster after the Effective Date will be reimbursed to him b> Ra. In the event Ra desires to abandon any patent or patent application within the Patent Rights. Ra shall provide Forster with reasonable prior written notice of such intended abandonment or decline of responsibility. If Forster elects to continue such patent or patent application, the Parties shall consult and Ra may elect to retain responsibility therefor. Otherwise, the right to prepare, file, prosecute, maintain and defend the relevant Patent Rights, at Forster’s expense, shall revert to Forster. In such event, such Forster paid-fur rights shall be removed from the definition of Patent Rights under this Agreement and the licenses granted to Ra and its Affiliates as to such rights shall terminate. Each Party shall provide to the other prompt notice as to all matters which come to its attention and which may affect the preparation, filing, prosecution or maintenance of any such patent applications or patents.

 

6.2                                Payment of Expenses .

 

(a)                                  Within ten (10) days after the Effective Date. Ra shall, as directed by Forster, pay lo Brigham and Women’s Hospital, one thousand nine hundred and ninety three dollars and twenty cents ($1,993.20) for Brigham’s unreimbursed patent costs related to the Patent Rights, as required under the Letter to Forster from Brigham and Women’s Hospital dated September 8. 2000. a copy of which has been provided to Ra. Such payment shall be made by check made payable to The Brigham and Women’s Hospital, Inc. and addressed as set forth below:

 

Brigham and Women’s Hospital
BOA-Lockbox Services
PCSR Lockbox #415007
MA 5-527-02-07
2 Morrissey Blvd
Dorchester. MA 02125

 

(b)                                  Payment of all reasonable out-of-pocket lees and costs incurred by Forster in obtaining, prosecuting, maintaining and defending the Patent Rights between the effective date of the Option Agreement and the Effective Date shall be the responsibility of Ra.

 

6.3                                Patent Extensions and Orange Book Listings . If elections with respect to obtaining patent term extensions (including, without limitation, any available pediatric extensions) or supplemental protection certificates or their equivalents in any country with respect to Patent Rights are available, Ra shall have the sole and exclusive right to make any such elections based on Licensed Products. With respect to data exclusivity periods (such as those periods listed in the FDA’s Orange Book (including, without limitation, any available pediatric extensions) or periods under national implementations of Article 10.1(a)(iii) of Directive 2001/EC/83 or orphan exclusivity periods, and all equivalents in any country I. Ra shall have the sole and exclusive right to seek and maintain all such data exclusivity periods available for the Licensed Products. With respect to all of the rights and activities identified in this Section 6.3, Forster hereby appoints Ra as its agent for such purposes with the authority to act on Forster’s behalf with respect to the Patent Rights in a manner consistent with this Agreement.

 

ARTICLE 7
INFRINGEMENT

 

7.1                                Infringement . Section 8.1(c) addresses infringement of the Licensed Patents.

 

7.2                                Declaratory Judgment Actions . If a declaratory judgment or other similar action is brought naming Forster or Ra or any of its Affiliates or Sublicensees as a defendant and alleging invalidity, unenforceability, non-infringement or any issues relating to inventorship or ownership of any

 

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Patent Rights, Ra or Forster, as the case may be, shall promptly notify the other Party in writing and Ra shall have the sole and exclusive right, but shall not be obligated, to have sole control of such action at its own expense.

 

7.3                                Patent Certifications . Forster shall notify and provide Ra with copies of any allegations of alleged patent invalidity, unenforceability or non-infringement of a Patent Right pursuant to a Paragraph IV Patent Certification by a third party filing an Abbreviated New Drug Application, an application under §505(b)(2) or any other similar patent certification by a third party, and any foreign equivalent thereof. Such notification and copies shall be provided to Ra within five (5) business days after Forster receives such certification.

 

7.4                                Settlement . No settlement, consent judgment or other voluntary final disposition of the suit may be entered into without the consent of Forster if such settlement, judgment or disposition would place additional obligations on Forster or grant additional rights to Ra other than those already contained in this Agreement, which consent shall not be unreasonably withheld.

 

ARTICLE 8
INDEMNIFICATION AND INSURANCE

 

8.1                                Indemnification .

 

(a)                                  Ra hereby agrees to indemnify, defend and hold harmless Forster from and against all damages, liabilities, losses and other expenses, including, without limitation, reasonable attorney’s fees, and expenses of litigation, regarding any claims, suits or proceedings brought by a third party (collectively “ Claim ”), that arise out of or relate to (a) any product, process, or service that is made, used, sold, imported, or performed pursuant to any right or license granted under this Agreement, (b) Ra’s failure to comply with any applicable laws, rules or regulations in connection with this Agreement, (c) the negligent or willful acts or omissions of Ra, and (d) any theory of product liability (including but not limited to actions in the form of tort, warranty or strict liability concerning any product, process or service made, used or sold pursuant to any right or license granted under this Agreement, except that Ra’s liability for damages under its indemnity shall be reduced or apportioned to the extent any claim is proximately caused by Forster’s gross negligence or willful misconduct.

 

(b)                                  Ra hereby agrees to indemnify, defend and hold harmless Brigham and Women’s Hospital and its affiliates and their respective trustees, directors, officers, medical and professional staff, employees and agents and their respective successors, heirs and assigns from and against all damages, liabilities, losses and other expenses, including, without limitation, reasonable attorney’s fees, regarding any Claims that arise out of or relate to (a) any product, process, or service that is made, used, sold, imported, or performed pursuant to any right or license granted under this Agreement, (b) Ra’s failure to comply with any applicable laws, rules or regulations in connection with this Agreement, and (c) the negligent or willful acts or omissions of Ra, except that Ra’s liability for damages under its indemnity shall be reduced or apportioned to the extent any claim is proximately caused by Brigham and Women’s Hospital’s gross negligence or willful misconduct.

 

(c)                                   If any third party shall, in the reasonable opinion of either Party, infringe any of the Licensed Patents, such Party shall promptly notify the other Party. Ra shall then have the sole and exclusive right to initiate a legal proceeding for infringement against the third party, in its own name and/or in the name of the Forster if necessary, together with the right to enforce and collect any judgment thereon. If Ra elects to exercise such right, (i) Forster shall, al Ra’s request, take all appropriate or necessary actions to assist in the prosecution of such proceeding (including consenting lo being joined in such proceeding), (ii) Forster shall bear the internal legal and other costs incurred by Forster in taking such actions, and shall be reimbursed by Ra for the reasonable external out-of

 

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pocket expenses paid to attorneys and consultants retained in connections with taking such requested actions and (iii) Ra shall hear its own internal and external legal and other costs and expenses, together with all other costs and expenses associated with the proceeding (including without limitation court costs). Any monetary recovery in connection with such infringement action shall he applied to reimburse Ra for its out-of-pocket expenses (including reasonable attorneys and consultants’ fees) in prosecuting such proceeding and the expenses of Forster reimbursed by Ra hereunder. Any balance shall be retained by Ra. During the pendency of any such proceeding, royalties payable under this Agreement shall remain payable.

 

(d)                                  Forster hereby agrees to indemnify, defend and hold harmless Ra and any Affiliates and their respective directors, officers, employees, agents, successors, assigns and other representatives from and against all damages, liabilities, losses and other expenses, including, without limitation, reasonable attorney’s fees, regarding any Claims that arise out of or relate to (a) any claim that Forster has not fulfilled his obligations to Brigham and Women’s Hospital or the National Institutes of Health, (b) any claim that Forster has failed to comply with his obligations to Blacklow, except to the extent such failure was caused by Ra’s failure to comply with its obligations under this Agreement, (c) Forster’s failure to comply with any applicable laws, rules or regulations in connection with this Agreement, and (d) the negligent or willful acts or omissions of Forster. except that Forster’s liability for damages under its indemnity shall be reduced or apportioned lo the extent any claim is proximately caused by the Ra’s gross negligence or willful misconduct.

 

(e)                                   the indemnifying Party shall not enter into any settlement of such Claims that do not unconditionally release the indemnified Party from all liability or that imposes any obligation on the indemnified Party without the indemnified Party’s prior written consent. Notwithstanding the above, the indemnified Party, at his or its expense, shall have the right to retain separate independent counsel to assist in defending any such Claims. In the event the indemnifying Party fails to promptly indemnify and defend such Claims or pay the indemnified Party’s expenses as provided above, the indemnified Party shall have (he right to defend himself or itself, and in that case, the indemnifying Party shall reimburse the indemnified Party for all of reasonable attorney’s fees, costs and damages incurred in settling or defending such Claims within thirty (30) days of each of the indemnified Party’s written requests. This indemnity shall be a direct payment obligation and not merely a reimbursement obligation of the indemnifying Party 10 the indemnified Party.

 

8.2                                Insurance . Ra shall obtain and carry in full force and effect commercial general liability insurance, in amounts not less than $2,000,000 per incident and $2,000,000 annual aggregate and naming the indemnified parties in Section 8.1 above as additional insureds. Upon initiation of a human clinical trial of any Licensed Product. Ra shall carry Product Liability in an amount no less than $2,000,000 per incident and $2.000,000 annual aggregate and naming the indemnified parties in Section 8.1 above as additional insureds. If Ra elects to self insure all or parts of the limits described above (including deductibles or retentions which are in excess of $250,000 annual aggregate) such self-insurance program must be acceptable to the Brigham and Women’s Hospital and the Risk Management Foundation. The minimum amounts of insurance coverage required under this Section 8.2 shall not be construed to create a limit of Ra’s liability with respect to its indemnification under Section 8.1 above. Ra shall continue to maintain such insurance for five (5 ) years after expiration or termination of this Agreement.

 

ARTICLE 9
REPRESENTATIONS OR WARRANTIES

 

9.1                                Representations and Warranties .

 

(a)                                  Each Party represents, warrants and covenants lo the other that (i) it has the corporate or other power and authority and the legal right to enter into this Agreement and perform its obligations hereunder: (ii) if has taken all necessary corporate or other action on its part required to

 

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authorize the execution and delivery of this Agreement and the performance of its obligations hereunder; and (hi) this Agreement has been duly executed and delivered on behalf of such Party, and constitutes a legal, valid and binding obligation of such Party that is enforceable against it in accordance with its terms.

 

(b)           Forster represents and warrants that: (i) Forster solely and exclusively owns the patents and applications included within the Patent Rights; (ii) Forster has the power and authority to grant the licenses provided for herein to Ra; (iii) Forster has not entered, and shall not enter, into any agreement with any third Party that is in conflict with the rights granted to Ra herein, and Forster has not taken and will not take any action that would in any way prevent Forster from granting the rights granted to Ra under this Agreement, or that would otherwise materially conflict with or adversely affect the rights granted to Ra under this Agreement; (iv) Forster’s performance and execution of this Agreement does not and will not result in a breach of any other contract lo which Forster is a party or to which the Patent Rights relate: (v) to Forster’s knowledge, there is no infringement of the Patent Rights by any third party; (vi) pursuant to Section 4.5, Forster or Ra has paid, and/or will pay. all consideration payable to Blacklow under the Blacklow Assignment and any other obligations relating to the Patent Rights; and (vii) there are no patent rights (either issued, pending, or available for filing) that claim priority to any of the patents or patent applications listed on Exhibit A (or any parent patent application thereof), other than the Patent Rights. Forster does not warrant the validity of the Patent Rights licensed hereunder and makes no representations whatever with respect to the scope of the licensed Patent Rights.

 

9.2           Disclaimer of Warranties . Except as otherwise be expressly set forth in this Agreement neither Party makes any other representations or extends any warranties of any kind, either express or implied, including, but not limited to, any express or implied warranties of merchantability. Illness for a particular purpose or non-infringement.

 

9.3           Limitation of Liability . Except for Ra’s indemnity obligations under section 8.1, in no event shall either Party be liable for any indirect or incidental damages such as damages for loss of profits or expected savings or other economic losses arising out of or in connection with this Agreement or its subject matter. Forster expressly disclaims any and all implied or express warranties and makes no express or implied warranties of merchantability. Illness for any particular purpose of the patent rights, information supplied by Forster. licensed processes or licensed products contemplated by this Agreement.

 

ARTICLE 10
ASSIGNMENT

 

This Agreement may not be assigned or otherwise transferred by either Party without the prior written consent of the other Party; provided, however, that (a) Ra may, without such consent, but with notice to Forster. assign this Agreement, in whole or in part, (i) in connection with the transfer or sale of all or substantially all of its assets or the line of business to which this Agreement relates, (ii) to a successor entity or acquirer in the event of a merger, consolidation, reorganization or change of control, or (iii) to any Affiliate; and (b) upon the death or incapacity of Forster, the rights of Forster will be. upon written notice (by a survivor or legal proxy of Forster. or by Forster’s estate) to Ra, assigned to Forster’s wife, or failing that, jointly to Forster’s children, or failing that, jointly to Forster’s parents and sister, or failing that as directed by Forster’s estate. This assignment may be changed by Forster with written notice to Ra. Any purported assignee will assume the rights and obligations of its assignor under this Agreement.

 

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ARTICLE 11
USE OF NAMES; MARKING

 

11.1         Non-Use of name by Ra . Ra and its Affiliates and Sublicensees shall not use the name of “Forster” or “Brigham and Women’s Hospital” or any trustee, director, officer, staff member, employee, student or agent of Brigham and Women’s Hospital or any variation, adaptation, or abbreviation thereof, or any terms of this Agreement in any publicity, advertising, promotional or sales material or other public announcement or disclosure or in any document employed to obtain funds or financing without the prior written consent of Forster or Brigham and Women’s Hospital, as applicable. In the case of the Brigham and Women’s Hospital, such consent shall be obtained from the Hospital’s VP of Public Affairs. The foregoing notwithstanding, without the consent of Forster and Brigham and Women’s Hospital, (i) Ra may state as a matter of fact that it is licensed by Forster under the Patent Rights (without any reference to Blacklow, Brigham and Women’s Hospital or any trustee, director, officer, staff member, employee, student or agent of Brigham and Women’s Hospital or any variation, adaptation, or abbreviation thereof), and (ii) Ra may identify Blacklow and Brigham and Women’s Hospital and their relationship to Ra solely to comply with disclosure requirements of all applicable laws relating to its business, including, without limitation. United States and state securities laws.

 

11.2         Marking of Licensed Products . To the extent commercially feasible and consistent with prevailing business practices, Ra shall mark, and shall cause its Affiliates and Sublicensees to mark, all Licensed Products that are manufactured or sold under this Agreement with the number of each issued patent under the Patent Rights that applies to such Licensed Product.

 

ARTICLE 12
TERMINATION

 

12.1         Voluntary Termination by Ra . Ra shall have the right to terminate this Agreement for any reason, upon at least thirty (30) days prior written notice to Forster, such notice to state the date at least thirty (30) days in the future upon which termination is to be effective.

 

12.2         Termination for Default.

 

(a)           In the event Ra fails to pay any undisputed amounts due and payable to Forster hereunder, and fails to make such payments with interest within thirty (30) days after receiving written notice of such failure, Forster may terminate this Agreement immediately upon written notice to Ra subject to completion of the dispute resolution process set forth in Article 13 and subsequent cure.

 

(b)           In the event Ra commits a material breach of its obligations under this Agreement, except for breach as described in Section 12.2(a). and fails to cure that breach within ninety (90) days after receiving written notice thereof, Forster may terminate this Agreement immediately upon written notice to Ra. subject to completion of the dispute resolution process set forth in Article 13 and subsequent cure.

 

(c)           In the event that Ra shall make an assignment for the benefit of creditors, or shall have a petition in bankruptcy filed for or against it (and such petition is not dismissed within sixty (60) days of filing), Forster shall have the right to terminate this entire Agreement immediately upon giving Ra written notice of such termination.

 

12.3         Effect of Expiration or Termination .

 

(a)           The following provisions shall survive the expiration or termination of this Agreement: Article I, Article 8, Article 9, Article 10. Article 13 and Article 14, and Sections 2.2 (but only with respect to the effect of termination on Sublicensees), 4.4 (lo the extent that any royalties

 

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were due while this Agreement was in effect). 5.2 (but only with respect to obligation to provide final report and payment), 5,3, 5.4, 11.1 and 12.3.

 

(b)           Upon the early termination of this Agreement, Ra and its Affiliates and Sublicensees may complete and sell any work-in-progress and inventory of Licensed Products that exist as of the effective date of termination, provided that (i) Ra pays Forster and Blacklow the applicable running royally or other amounts due on such sales of Licensed Products in accordance with the terms and conditions of this Agreement, (ii) Ra and its Affiliates and Sublicensees shall complete and sell all work-in-progress and inventory of Licensed Products within six (6) months after the effective date of termination and (iii) Ra shall continue to be subject to the obligations specified under Article 8.

 

(c)           Expiration or termination of this Agreement for any reason shall not relieve either Party of any liability or obligation which accrued hereunder prior to the effective date of such termination or expiration.

 

ARTICLE 13
DISPUTE RESOLUTION

 

13.1         Mandatory Procedures . The Parties agree that any dispute arising out of or relating to this Agreement or the breach thereof, the Parties shall try to settle said dispute amicably between themselves, any such disputes which the Parties are unable to resolve shall be resolved solely by means of the procedures set forth in this Article 13. and that such procedures constitute legally binding obligations that are an essential provision of this Agreement. If either Party fails to observe the procedures of this Article 13. as may be modified by their written agreement, the other Party may bring an action for specific performance of these procedures in any court of competent jurisdiction.

 

13.2         Equitable Remedies . Although the procedures specified in this Article 13 are the sole and exclusive procedures for the resolution of disputes arising out of or relating to this Agreement, either Party may seek a preliminary injunction or other provisional equitable relief if, in its reasonable judgment, such action is necessary to avoid irreparable harm lo itself or to preserve its rights under this Agreement.

 

13.3         Dispute Resolution Procedures . Any controversy or claim arising out of or relating to this Agreement, or the breach thereof, shall be settled by binding confidential arbitration in accordance with the Commercial Arbitration Rules of the American Arbitration Association (“AAA”), and the procedures set forth below. In the event of any inconsistency between the Rules of AAA and the procedures set forth below, the procedures set forth below shall control. Judgment upon the award rendered by the arbitrators may be enforced in any court having jurisdiction thereof. The award through arbitration shall be final and binding.

 

(a)           The location of the arbitration shall be in Boston. Massachusetts. Forster and Ra hereby irrevocably submit to the exclusive jurisdiction and venue of the AAA arbitration panel selected by the Parties and located in Boston, Massachusetts for any dispute regarding this Agreement, and to the exclusive jurisdiction and venue of the federal and state courts located in Boston. Massachusetts for any action or proceeding to enforce an arbitration award or as otherwise provided in Section 13.3(e), and waive any right to contest or otherwise object to such jurisdiction or venue.

 

(b)           The arbitration shall be conducted by a panel of three neutral arbitrators who are independent and disinterested with respect to the Parties, this Agreement, and the outcome of the arbitration. Each Party shall appoint one neutral arbitrator, and these two arbitrators so selected by the Parties shall then select the third arbitrator, and all arbitrators must have at least ten (10) years experience in mediating or arbitrating cases regarding the same or substantially similar subject matter

 

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as the dispute between Forster and Ra. (Tone Party has given written notice to the other Party as to the identity of” the arbitrator appointed by the Party, and the Party thereafter makes a written demand on the other Party to appoint its designated arbitrator within the next ten days, and the other Party fails to appoint its designated arbitrator within ten days after receiving said written demand, then the arbitrator who has already been designated shall appoint the other two arbitrators.

 

(c)           The arbitrators shall decide any disputes and shall control the process concerning these pre-hearing discovery matters. Pursuant to the Rules of AAA, the Parties may subpoena witnesses and documents for presentation at the hearing.

 

(d)           Prompt resolution of any dispute is important to both Parties: and the Parties agree that the arbitration of any dispute shall be conducted expeditiously. The arbitrators are instructed and directed to assume case management initiative and control over the arbitration process (including, without limitation, scheduling of events, pre-hearing discovery and activities, and the conduct of the hearing), in order to complete the arbitration as expeditiously as is reasonably practical for obtaining a just resolution of the dispute.

 

(e)           The arbitrators may grant any legal or equitable remedy or relief that the arbitrators deem just and equitable, to the same extent that remedies or relief could be granted by a state or federal court, provided however, that no punitive damages may be awarded. No court action shall be maintained seeking punitive damages. The decision of any two of the three arbitrators appointed shall be binding upon the Parties. Notwithstanding anything to the contrary in this Agreement, prior lo or while an arbitration proceeding is pending, either Party has the right to seek and obtain injunctive and other equitable relief from a court of competent jurisdiction to enforce that Party’s rights hereunder.

 

(f)            The expenses of the arbitration, including, without limitation, the arbitrators* fees, expert witness fees, and attorney’s fees, may be awarded to the prevailing Party, in the discretion of the arbitrators, or may be apportioned between the Parties in any manner deemed appropriate by the arbitrators. Unless and until the arbitrators decide that one Party is to pay for all (or a share) of such expenses, both Parties shall share equally in the payment of the arbitrators’ fees as and when billed by the arbitrators,

 

(g)           Notwithstanding the foregoing, any disputes arising hereunder with respect to the inventorship, ownership, validity, enforceability or other aspect of intellectual property rights shall be resolved by a court of competent jurisdiction and not by arbitration.

 

(h)           Except as set forth below and as necessary to obtain or enforce a judgment upon any arbitration award, the Parties shall keep confidential the fact of the arbitration, the dispute being arbitrated, and the decision of the arbitrators. Notwithstanding the foregoing, the Panics may disclose information about the arbitration to persons who have a need to know, such as directors, trustees, management employees, witnesses, experts, investors, attorneys, lenders, insurers, actual or potential collaborators or corporate partners of Ra, actual or potential acquirers of Ra, and others who may be directly affected provided that such persons are hound to keep such information confidential. Additionally, if a Party has stock which is publicly traded, the Party may make such disclosures as are required by applicable securities laws, but shall use commercially reasonably efforts to seek confidential treatment for such disclosure.

 

13.4         Performance to Continue , Each Party shall continue to perform its undisputed obligations under this Agreement pending final resolution of any dispute arising out of or relating to this Agreement: provided, however, that a Party may suspend performance of its undisputed obligations during any period in which the other Party fails or refuses to perform its undisputed obligations.

 

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13.5         Statute of Limitations . The Parties agree that all applicable statutes of limitation and lime-based defenses (such as estoppel and laches) shall be tolled while the procedures set forth in Section 13.5 are pending. The Panics shall cooperate in taking any actions necessary to achieve this result.

 

ARTICLE 14
MISCELLANEOUS

 

14.1         Notice . Any notices required or permitted under this Agreement shall be in writing, shall specifically refer to this Agreement, and shall be sent by hand, recognized national overnight courier, or registered or certified mail, postage prepaid, return receipt requested, to the following addresses or facsimile numbers of the Parties:

 

If to Forster:

 

 

 

 

Anthony C. Forster. M.D., Ph.D.

 

357 Childe Harold’s Circle

 

Brentwood, TN 37027

 

 

If to Ra:

 

 

 

 

Ra Pharmaceuticals. Inc.

 

c/o Morgenthaler Ventures

 

222 Berkeley Street, 20th Floor

 

Boston, MA 02116

 

Attention: Douglas A. Treco, Ph.D.

 

 

With a copy to;

 

 

 

 

Goodwin Procter LLP

 

53 State Street

 

Boston, MA 02109-2802

 

Attention: Kingsley L. Taft, Esq.

 

 

If to Blacklow;

 

 

 

 

Dr. Stephen C. Blacklow

 

16 Ash Street

 

Cambridge, MA 02138

 

 

If to Brigham and Women’s Hospital:

 

 

 

Executive Director. Research, Ventures and Licensing

 

Brigham and Women’s Hospital

 

101 Huntington Avenue, 4th Floor

 

Boston, MA 02199-8001

 

Fax No. (617) 954-9361

 

Agreement No. A207428

 

 

All notices under this Agreement shall he deemed effective upon receipt. A Party may change its contact information immediately upon written notice to the other Party in the manner provided in this Section 14.1. Ra M ill provide Forster with an account number for making charges to a suitable express mail service should any expedited mailings be necessary, or reimburse him for any out-of-pocket expenses incurred.

 

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14.2         Governing Law . This Agreement and all disputes arising out of or related to this Agreement, or the performance, enforcement, breach or termination hereof, and any remedies relating thereto, shall be construed, governed, interpreted and applied in accordance with the laws of the Commonwealth of Massachusetts, without regard to conflict of laws principles, except that questions affecting the construction and effect of any patent shall be determined by the law of the country in which the patent shall have been granted.

 

14.3         Force Majeure . Neither Party shall be responsible for delays resulting from causes beyond the reasonable control of such Party, including, without limitation fire, explosion, flood, war. strike, or riot, provided that the nonperforming Party uses commercially reasonable efforts to avoid or remove such causes of nonperformance and continues performance under this Agreement with reasonable dispatch whenever such causes are removed.

 

14.4         Amendment and Waiver , This Agreement may be amended, supplemented, or otherwise modified only by means of a written instrument signed by both Parties. Any waiver of any rights or failure to act in a specific instance shall relate only to such instance and shall not be construed as an agreement to waive any rights or fail to act in any other instance, whether or not similar.

 

14.5         Severability . In the event that any provision of this Agreement shall be held invalid or unenforceable for any reason, such invalidity or unenforceability shall not affect any other provision of this Agreement, and the Parties shall negotiate in good faith to modify the Agreement to preserve (to the extent possible) their original intent. If the Parties fail to reach a modified agreement within thirty (30) days after the relevant provision is held invalid or unenforceable, then the dispute shall be resolved in accordance with the procedures set forth in Article 13, While the dispute is pending resolution, this Agreement shall be construed as if such provision were deleted by agreement of the Parties.

 

14.6         Binding Effect . This Agreement shall be binding upon and inure to the benefit of the Parties and their respective legal representatives, successors and assigns.

 

14.7         Third Party Beneficiaries . Except with respect to an indemnified Parties’ rights under Section 8.1. the provisions set forth in this Agreement are for the sole benefit of the Parties hereto and their successors and assigns, and they shall not be construed as conferring any rights on any other persons.

 

14.8         Headings . All headings are for convenience only and shall not affect the meaning of any provision of this Agreement.

 

14.9         Entire Agreement . This Agreement constitutes the entire agreement between the Parties with respect to its subject matter and supersedes all prior agreements or understandings between the Parties relating to its subject matter, including, without limitation, the Option Agreement.

 

14.10       Counterparts; Signatures . This Agreement may be executed in any number of counterparts, each of which will be deemed an original and all of which together will constitute one and the same instrument. Facsimile or PDF signatures shall be treated as original signatures.

 

[ remainder of this page intentionally left blank ]

 

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IN WITNESS WHEREOF, the Parties have caused this Agreement to be executed by their duly authorized representatives.

 

Anthony C. Forster. M.D., Ph.D.

RA PHARMACEUTICALS, INC.

 

 

By:

/s/ Anthony Forster

By:

/s/ Douglas A. Treco

Name:

Anthony C. Forster

Name:

Douglas A. Treco

 

 

Title:

President and CEO

 

 

 

 

Approved by The Brigham and Women’s Hospital. Inc.

 

 

 

THE BRIGHAM AND WOMEN’S HOSPITAL. INC.

 

 

 

By:

/s/ Vandana Yajnik

 

Name:

Vandana Yajnik

 

Title:

Director, Research & Licensing,

 

 

Research Ventures & Licensing

 

Date:

11/30/10

 

 



 

EXHIBIT A

 

PATENT RIGHTS

 

Issued Patents:

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS United States of America Issued (US 6,977,150: Corresponding Appl. No. 10/057,783)

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS Australia Issued (Patent No. 2002255488)

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS Switzerland Issued (Patent No. 1356036; Corresponding Appl. No. 2724888.9)

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS Germany Issued (Patent No. 60226411.1-08; Corresponding Appl. No. 2724888.9)

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS European Patent Office Issued (EP 1 356 036 B1; Corresponding Appl. No. 2724888.9)

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS France Issued (Patent No. 1356036; Corresponding Appl. No. 2724888.9)

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS United Kingdom Issued (Patent No. 1356036; Corresponding Appl. No. 2724888.9)

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS Ireland Issued (Patent No. 1356036; Corresponding Appl. No. 2724888.9)

 

Pending Applications:

 

PROCESS AND COMPOSITIONS FOR PEPTIDE, PROTEIN AND PEPTIDOMIMETIC SYNTHESIS Canada Pending Appl. No. 2,435,812

 

PROCESS AND COMPOSITIONS FOR PEPTIDE. PROTEIN AND PEPTIDOMIMETIC SYNTHESIS Japan Pending Appl. No. 2002-559580

 




Exhibit 10.13

 

CONFIDENTIAL

 

Gryphon Therapeutics, Inc.

Phylos, Inc.

600 Gateway Blvd.

128 Spring St.

So. San Francisco, CA 94080

Lexington, MA 02421

(“Gryphon”)

(“Phylos”)

 

Research and Development Collaboration and License agreement

 

1                                                                                          Scope and Field.

 

1.1                                Set forth below is the agreement of Gryphon and Phylos, each sometimes referred to herein as a “Party” or collectively as the “Parties”, which hereby acknowledge that they have received adequate and sufficient consideration for entering into their respective and mutual agreements below.

 

1.2                                Gryphon wishes to apply Phylos’ PROfusion™ Technology in developing high affinity peptides.

 

1.3                                The Parties wish to establish a collaboration which will allow Gryphon to evaluate the PROfusion Technology in conjunction with its Cosmix Technology.

 

1.4                                Phylos wishes to grant Gryphon a nonexclusive license for the use of PROfusion Technology.

 

2                                                                                          Definitions.

 

2.1                                “Affiliate” means any corporation or non-corporate business entity which controls, is controlled by, or is under common control with a party to this Agreement. A corporation or non-corporate business entity shall be regarded as in control of another corporation if it owns or directly or indirectly controls at least fifty percent (50%) of the voting stock of the other corporation, or (a) in the absence of the ownership of at least fifty percent (50%) of the voting stock of a corporation, or (b) in the case of a non-corporate business entity, if it possesses, directly or indirectly, the power to direct or cause the direction of the management and policies of the corporation or non-corporate business entity, as applicable, whether through the ownership or control of voting securities, by contract or otherwise.

 

2.2                                “Cosmix Technology” means (a) all present and future patents, patent applications, reissued patents, re-examined patents, divisions, renewals, continuations and continuations-in-part, substitutions, extensions and foreign counterparts thereof owned, controlled by or licensed to Gryphon that relate to Cosmix-plexing® technology, as described in Exhibit A attached hereto and (b) all present and future techniques, inventions, discoveries, practices, methods, know-how, technical data and information (other than described in clause (a) of this Section 2.1) that are necessary or useful to practice the Cosmix-plexing® technology, that are not generally known and that are within the Control of Cosmix or its affiliates, “Control” meaning the right and ability to grant sublicenses.

 

2.3                                “Effective Date” means the date of execution of this Agreement by the last of the three signatories hereto.

 

2.4                                “D-Target” means a protein composed of D amino acids.

 

2.5                                “Gryphon Patent Rights” means those patents, patent applications, reissued patents, reexamined patents, divisions, renewals, continuations and continuations-in-part, substitutions, extensions and foreign counterparts thereof, relating to Gryphon’s D-screening technology set forth on Exhibit B hereto, and arising after the Effective Date but before completion of performance by Phylos under this Agreement or such earlier expiration or termination of this Agreement and agreed by the parties to be added to Exhibit B, but in all instances excluding Cosmix Technology).

 

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2.6                                “Gryphon Know-How” means techniques, inventions and/or discoveries, practices, methods, knowledge, know-how, skill, technical data and information, and materials that are necessary or useful to the practice of Gryphon Patent Rights, that are not generally known and that are within the Control of Gryphon or its Affiliates as of the Effective Date or come into the Control of Gryphon or its Affiliates before completion of performance by Phylos under this Agreement or such earlier expiration or termination of this Agreement, but in all instances excluding know how related to Cosmix Technology and Gryphon Patent Rights.

 

2.7                                “Gryphon Technology” means the Gryphon Know-How and the Gryphon Patent Rights, collectively.

 

2.8                                “Gryphon” means Gryphon Therapeutics, Inc, a California corporation and its Affiliates

 

2.9                                “Major Market” means any of: the United States, Japan, Germany, France, the United Kingdom, Italy or Spain.

 

2.10                         “Owner” means the Party having rights to the Product.

 

2.11                         “PROfusion™ Technology” means compositions of matter (including, but not limited to reagents) and methods, whether or not patented or patentable, and know-how for in vitro protein evolution wherein peptide-encoding messenger RNA (“mRNA”) molecules are generated with a modification linking a peptide acceptor such as a puromycin molecule to the 3’ terminus of the mRNA molecule so that in vitro translation results in a peptide or protein covalently linked to its encoding nucleic acid via the 3’ terminus of the mRNA and the carboxyl terminus of the peptide or protein via a peptide acceptor such as a puromycin molecule and wherein peptides or proteins having a desired binding affinity are selected from libraries of these RNA-protein fusion molecules. The PROfusion™ Technology, including a description of peptide acceptors such as a puromycin molecule, includes, without limitation, the following family of patents: US 6,261,804; 6,258,558; 6,214,553; 6,281,344; and 6,207,446, and others listed on Exhibit E, and all reissues, reexaminations, renewals, divisionals, continuations, continuations-in-part and foreign counterparts of any of the foregoing.

 

2.12                         “Product” means any peptides or their derivatives identified during PROfusion Technology screening pursuant to this Agreement.

 

3                                                                                          Licenses and Intellectual Property.

 

3.1                                Gryphon hereby grants and will grant to Phylos and its Affiliates, a nonexclusive license under Gryphon Patent Rights solely for the purpose of conducting research and development activities in the performance of it obligations under this Agreement until the earlier of (i) completion of such activities hereunder or (ii) the earlier of expiration or termination of this Agreement.

 

3.2                                Phylos hereby grants and will grant to Gryphon and its Affiliates a worldwide, nonexclusive license under PROfusion Technology including future improvements and enhancements thereto, specifically for use with Peptide Libraries (as defined in Appendix C) to screen, make, have made, improve, have improved, use, market, offer for sale, sell, have sold, distribute, have distributed, export and import (i) peptides and their derivatives isolated during use of PROfusion Technology, including but not limited to, screening of D-Targets provided to Phylos hereunder, and (ii) Products resulting from the application of PROfusion Technology using Peptide Libraries, with or without the additional application of Cosmix Technology. The foregoing licenses to Gryphon and Affiliates to use the PROfusion Technology shall be sublicensable solely for the purpose of enabling manufacturers to produce Products, if necessary or advisable. Nothing in this Agreement shall be construed to limit Gryphon’s or its Affiliates right or ability to grant licenses in respect of Products.

 

3.3                                Gryphon shall grant Phylos and its Affiliates a fully paid up worldwide, non-exclusive license, with the right to sublicense, for any patented improvements and enhancements to Profusion Technology made by Gryphon or its Affiliates.

 

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3.4                                All inventions, data, and reports resulting from the activities of Phylos under this Agreement, with the exception of improvements or enhancements to the PROfusion Technology, will be assigned to Gryphon.

 

3.5                                If a third party asserts that a patent or other right owned or controlled by it is infringed by PROfusion Technology, Phylos shall have the first right, but not the obligation, to defend against any such third party allegation of infringement by PROfusion Technology, and Phylos shall bear the costs of any such action, including attorneys’ fees. Gryphon shall also have the right to defend against such third party allegation of infringement at its own cost, if Phylos does not undertake such defense within forty-five (45) days after receiving notice of such third party allegation of infringement by the PROfusion Technology. Each Party shall promptly notify the other of its receipt from a third party of an allegation of infringement based upon the practice of any of the PROfusion Technology. For purposes of this section, the “right to defend” includes the right to commence an action for declaratory relief.

 

3.6                                If there shall be declared an interference pertaining to any part of the PROfusion Technology, Phylos shall diligently pursue such interference to conclusion and shall bear the costs thereof, including attorneys’ fees.

 

3.7                                Phylos shall obtain Gryphon’s written consent (not to be unreasonably withheld) prior to entering into any settlement or other transaction (i) with any third party to resolve such third party infringement action or assertions or (ii) to settle an interference, if such settlement or transaction does not contain a full and unconditional release of Gryphon for past infringements, if any, and a grant to Gryphon of such rights to practice third party intellectual property as shall have been granted to Phylos in such settlement., provided .however, that such consent shall not be required if such settlement or transaction contains a full and unconditional release of Gryphon for past infringement and a grant to Gryphon of such rights to practice such third party intellectual property as have been granted to Phylos in such settlement; provided, however, such consent shall not be required if such settlement or transaction contains a full and unconditional release of Gryphon for past infringement and a grant to Gryphon of such rights to practice such third party intellectual property as have been granted to Phylos in such settlement.

 

4                                                                                          Screening of Targets.

 

4.1                                Gryphon will supply at least two D-Targets to Phylos for screening , the first within 30 days and the second within 6 months of the Effective Date.

 

4.2                                Phylos will screen its PROfusion Technology peptide libraries against each D-Target, and identify the sequence of any peptides showing better than 50 nanomolar affinity for the D-Target. The Parities shall jointly agree to the libraries’ composition as part of an overall workplan to be established by the parties within 14 days of the Effective Date.

 

4.3                                Phylos will notify Gryphon of the amino acid sequences of not less than 15 and not more than 25 peptides identified pursuant to Section 4.2 above during the screening of each D-Target within ten days of their identification.

 

4.4                                The Phylos screening of the two initial D-Targets shall be deemed successful, if Phylos identifies five Products for each of the two D-Targets with affinities better than 50 nanomolar for their respective D-Targets, each Product with less than 25% sequence identity with any of the other Products relating to the same D-Target.

 

4.5                                If the Phylos screening of the two initial D-Targets is successful, then for each additional target Gryphon wishes to screen under this Agreement, it will offer the opportunity to Phylos to perform PROfusion Technology screening of Phylos Peptide Libraries against such additional targets under the same terms and conditions as pertained to the initial two D-Targets.

 

4.6                                Phylos may, in its sole discretion, accept or decline any request of Gryphon to screen more than the initial two D-Targets. Phylos must accept, if at all, in writing, any Gryphon

 

3



 

proposal of Phylos to perform additional screening within thirty days of its being sent by Gryphon to Phylos.

 

4.7                                Phylos and Gryphon will develop a work plan for each target accepted under 4.6, including project goals and timelines. Gryphon shall be precluded from applying PCT (as hereinafter defined) to any target which has been accepted for screening using PROfusion Technology by Phylos, until such time as such screening has failed to meet the goals within the timeline set forth in the work plan agreed to by the Parties.

 

4.8                                Gryphon shall compensate Phylos for its activities pursuant to Article 4 and 5 hereof at Phylos’ prevailing fully burdened FTE rate (not to exceed $ 250,000 per year for the calendar year starting January 1, 2003). In future years, but not earlier than for the calendar year starting January 1, 2005, such FTE rate can increase on Phylos’ request, but not in excess of the annual rate of inflation as measured by the Consumer Price Index for all urban areas. Such FTE charges shall not exceed by more than 20% the charges allotted therefore in the applicable mutually agreed upon work plan. Such payments shall be in addition to any sums earned by Phylos pursuant to Article 6 herein and such monthly payments shall be due at the start of each work month..

 

5                                                                                          Research Collaboration.

 

5.1                                Phylos and Gryphon will design PROfusion Technology peptide libraries adapted to the application of Cosmix Technology.

 

5.2                                The characteristics of such PROfusion Technology peptide libraries, including, but not limited to diversity, sustainability, sequence length and cloning strategies of the PROfusion library shall be agreed to by the parties and attached hereto as Exhibit C within 30 days of the Effective Date.

 

5.3                                Phylos will use its best efforts to construct the designed library according to the Work Plan and timelines agreed to by the parties and attached hereto as part of Exhibit C within 30 days following agreement of the parties pursuant to Section 5.2 above.

 

5.4                                Phylos will conduct a selection against a D-Target specified by Gryphon using the constructed libraries and will supply Gryphon with the sequence information and the appropriate DNA samples representing those selected pools. Gryphon will be free to attempt to apply Cosmix Technology to the selected pools and demonstrate the enhanced diversity contained within and increased affinity of Products developed from the resulting Cosmix Technology, if any.

 

6                                                                                          Consideration.

 

6.1                                Within 48 hours of notice of the Effective Date, Gryphon shall pay   to Phylos as a license fee.

 

6.2                                Within 48 hours of receipt of a License Approval Order (as defined below) from the U.S. Bankruptcy Court for the District of Delaware conforming to the requirements set forth below and signifying approval of this Agreement, Gryphon shall pay to Phylos the sum of   as an additional license fee. Such approval shall be by entry of a final Court order (“License Approval Order”) which is not subject to an appeal or a stay pending appeal. The inability or failure of Phylos to obtain a License Approval Order shall not affect the rights of Gryphon under this Agreement, but shall relieve Gryphon of any obligation to make payment pursuant to this Section 6.2. The License Approval Order must specifically provide that:

 

i.                                           The License Approval Order will be binding upon Phylos or any successor of Phylos or its bankruptcy estate, including but not limited to any Chapter 7 or 11 Trustee appointed in the Phylos case; and shall constitute without variation the treatment of Gryphon’s administrative claim in the Phylos case or any successor case, binding upon all parties in interest, including but not limited to in any liquidation or in any Plan of Reorganization to be confirmed by the Court or proposed by Phylos.

 

4



 

ii.                                        The License Approval Order shall provide that Gryphon will receive immediate and unconditional relief from the automatic stay to pursue its foreclosure rights without further order of the Court to enforce post-petition any of its rights under the License, including but not limited to: 1) the ability to terminate the License Agreement; 2) the ability to commence suit against Phylos or others to enforce its rights under the License Agreement; and 3) to take any other action even against property of the estate to enforce Gryphon’s rights under the license.

 

iii.                                     The rights and interests granted to Gryphon under the License Agreement shall be free and clear of all liens, security and other interests, mortgages, trust deeds, encumbrances, pledges, and claims of any kind of any party (“License Encumbrances”) whether arising on, before or after the Petition Date. All such License Encumbrances shall be terminated and released as to the License Agreement and underlying licenses and shall attach to the proceeds of the transaction in the order of priority and with the same validity, force, and effect possessed by such License Encumbrances, if any, prior to the effectiveness of the License Agreement.

 

6.3                                Upon filing of an IND or equivalent for the first indication for a Product, Gryphon will pay Phylos $50,000. If Gryphon has partnered the Product prior to filing the IND, Gryphon will pay Phylos the lesser of $250,000 or 20% of the applicable license milestone payments received to such time.

 

6.4                                Upon the start of Phase II trials (commencement of drug administration) for the first indication of a Product, Gryphon will pay Phylos $150,000. If Gryphon has partnered the Product prior to such time, Gryphon will pay Phylos the lesser of $300,000 or 20% of the applicable license milestone payments.

 

6.5                                The greater of (i) 20% of any milestones received by Gryphon from a sublicensee of a Product as a result of entry of such Product into its first pre-registration clinical trial in any Major Market (Phase III, Phase ll/lll, or an equivalent, whichever first occurs) or (ii) $2.0 million upon such event.

 

6.6                                The greater of (i) 20% of any applicable licensing milestones received by Gryphon from a sublicensee as a result of filing for the first registration (NDA or equivalent) of each Product in any Major Market, or (ii) $3.0 million upon such event.

 

6.7                                The greater of (i) 20% of any applicable licensing milestones received by Gryphon from a sublicensee as a result of the first commercial sale of each Product in any Major Market, or (ii) $5.0 million upon such event.

 

6.8                                For each Product developed hereunder by Gryphon using both PROfusion Technology and Cosmix Technology, Gryphon will pay amounts due to Phylos under Sections 6.3, 6.4, 6.5, and 6.6 at one-half the rates set forth therein in substitution of the amounts and * rates se| forth therein. Payments due Phylos under Sections 6.2 shall remain unaffected by the use of Cosmix Technology.

 

7                                                                                          Termination.

 

7.1                                Gryphon may terminate this Agreement without cause upon 60 days’ notice to Phylos.

 

7.2                                In the event of a termination of this Agreement pursuant to Section 7.1 Gryphon shall remain responsible to pay to Phylos any sums thereafter due pursuant to Article 6 above.

 

7.3                                As between Gryphon and Phylos, Gryphon shall be the sole owner of all peptides delivered hereunder and resulting Products, and its right, title, and ownership therein shall survive termination of this Agreement. Gryphon, in its sole discretion, shall be responsible for the pursuit, if any, maintenance and enforcement of any patents or other intellectual property protection relating to any such peptides or Products.

 

5



 

7.4                                The licenses granted by Phylos to Gryphon under this Agreement in respect of Products shall survive termination of this Agreement. All licenses granted hereunder by Phylos to Gryphon shall be deemed to be the grant of licenses of “Intellectual Property” under Section 365(n) of the United States Bankruptcy Code, as amended.

 

8                                                                                          Publicity.

 

Neither Party may publicize the existence of this Agreement or the participation of the other Party in the development of its Products without the express written permission of the other Party.

 

9                                                                                          Additional.

 

9.1                                Representations and Warranties. Except as disclosed on the Schedule of Exceptions attached hereto as Exhibit D, each Party represents and warrants to the other Party as of the Effective Date as follows:

 

9.1.1                      that it is duly organized, validly existing and in good standing under the laws of the jurisdiction where it is organized;

 

9.1.2                      that it is in compliance with all requirements of applicable law, except to the extent that any noncompliance would not have a material adverse effect on the properties, business, financial or other condition of such Party and would not materially adversely affect such Party’s ability to perform its obligations under this Agreement;

 

9.1.3                      that it has the lawful right to execute and perform this Agreement and to accept this grant of rights from the other Party, and that this Agreement does not violate or conflict with any other agreement to which the Party is a Party or any law or regulation applicable to it;

 

9.1.4                      that it will use the Confidential Information, Know-How, Intellectual Property, Technology, and other property of the other Party only as authorized under this Agreement, and will follow all applicable standards, specifications, laws, regulations, guidelines and rules;

 

9.1.5                      that no claim has been asserted or threatened by any person that the practice of such Party’s Technology constitutes, and to such Party’s knowledge, the practice of its Technology does not constitute, an infringement, misappropriation or violation of any intellectual property rights of any other person or constitutes unfair competition;

 

9.1.6                      that such Party shall not knowingly infringe, misappropriate or violate the intellectual property rights of any person in carrying out it obligations hereunder;

 

9.1.7                      to such Party’s knowledge, no third Party has materially infringed, misappropriated or violated, or is materially infringing, misappropriating or violating, its Technology; and

 

9.1.8                      to such Party’s knowledge, exercise by the other Party of its rights under this Agreement will not result in any infringement, misappropriation or violation of any intellectual property rights of any Third Party.

 

9.2                                Limitation. EXCEPT AS PROVIDED IN THIS ARTICLE 9, EACH PARTY, ITS DIRECTORS, OFFICERS, EMPLOYEES AND AFFILIATES MAKE NO OTHER REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, VALUE, SAFETY, RELIABILITY, EFFICACY, NONTOXICITY, PATENTABILITY OF PATENTS OR VALID CLAIMS, ISSUED OR PENDING, NON-INFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER OR NOT DISCOVERABLE, IN THE TECHNOLOGY, PRODUCTS OR IN ANY INTANGIBLE OR TANGIBLE ITEM GENERATED UNDER OR USED WITHIN THIS AGREEMENT;

 

6



 

9.3                                Limited Liability. IN NO EVENT SHALL EITHER PARTY TO THIS AGREEMENT BE LIABLE FOR ANY LOST PROFITS OR FOR ANY INDIRECT, SPECIAL, INCIDENTAL, CONSEQUENTIAL OR PUNITIVE DAMAGES ARISING OUT OF THIS AGREEMENT, THE BREACH OF THIS AGREEMENT OR THE EXERCISE OF RIGHTS HEREUNDER WHETHER UNDER ANY CONTRACT, NEGLIGENCE, STRICT LIABILITY OR OTHER LEGAL OR EQUITABLE THEORY.

 

10                                                                                   Confidentiality.

 

10.1                         Definitions. In this Section 10, the following terms shall have the following meanings whenever such terms are used in their capitalized form:

 

10.1.1               “Confidential Information” means any proprietary or confidential information of the Disclosing Party, except such information falling within an exception recited below, which is communicated in any way or form by the Disclosing Party to the recipient, either before or after the Effective Date of this Agreement, and whether or not such information is identified as confidential. Confidential Information includes any data or reports provided by one Party to the other Party pursuant to this Agreement, as well as the terms and conditions of this Agreement. Confidential Information shall not include any information that:

 

a)                                      is or later becomes a part of the public domain through no fault of Recipient;
or

 

b)                                      recipient can demonstrate was in its rightful possession, without a restriction on use or disclosure, prior to receipt of the information from the disclosing Party or an entity acting on its behalf; or

 

c)                                       Recipient can demonstrate was rightfully received from a third party without a restriction on use or disclosure; or

 

d)                                      recipient can demonstrate by written evidence was independently developed by Recipient without use, directly or indirectly, of Confidential Information of the Disclosing Party.

 

10.1.2               “Disclosing Party” means the Party making disclosure of or otherwise communicating its Confidential Information to the other Party.

 

10.1.3               “Recipient” means the Party receiving or otherwise obtaining Confidential Information from the Disclosing Party.

 

10.1.4               “Third Party” means any party other than Gryphon, Phylos, and their respective Affiliates.

 

10.2                         Restrictions on Use. In consideration of disclosure by either of the Parties to the other Party of Confidential Information in written, oral, graphic or electronic form pursuant to the terms of this Agreement, the Recipient undertakes, unless otherwise stipulated herein, (a) to treat such Confidential Information received from the Disclosing Party with the same degree of care to maintain the secrecy of the Confidential Information as it uses to maintain the secrecy of its own information of like kind; and (b) to use the Confidential Information only to accomplish the purposes of this Agreement. Recipient will not disclose Confidential Information received from the Disclosing Party except to its employees, agents, consultants, independent contractors who have a need to know the Confidential Information in furtherance of the purposes of this Agreement (collectively, the “Representatives”), and such Representatives will be bound to Recipient by obligations of non-use and non-disclosure that are similar to or more stringent than those imposed on Recipient pursuant to this Agreement.

 

11                                                                                   Indemnification.

 

11.1                         Obligation to Indemnify. Each of the Parties hereto shall defend, indemnify and hold harmless the other Party and its Affiliates, successors and assigns, and their respective directors, officers, shareholders, partners, employees, and agents (collectively, the

 

7



 

“Indemnitees”) from and against all losses, damages, costs and expenses (including legal fees) incurred thereby or caused thereto which arise out of claims against the Indemnitees brought by Third Parties after the Effective Date of this Agreement which arise out of or relate to (i) any material breach or violation of, or failure to properly perform, any covenant or agreement made by the Indemnifying Party in this Agreement; or (ii) any material breach of any of the representations or warranties made by the Indemnifying Party in this Agreement. The Indemnifying Party shall have no obligation to indemnify any Indemnitee hereunder to the extent any such losses, damages, costs and expenses arise out of the negligence or willful misconduct of Indemnitee.

 

12                                                                                   Miscellaneous.

 

12.1                         Severability. If any court of competent jurisdiction determines that any provision of this Agreement is partially or wholly unenforceable under applicable law, such provision shall be enforced to the maximum extent permitted by applicable law, and the remaining provisions of this Agreement shall remain in full force and effect.

 

12.2                         Force Majeure. In the event that any strike, epidemic, natural disaster, fire, other act of God, war, civil disturbance, act of terrorism, explosion, or act or decision of any governmental authority renders impossible the performance of any of the obligations of the Parties or either of them under this Agreement, the Party or Parties affected shall be excused the performance of the relevant obligation or obligations upon notifying the other Party in writing, giving a detailed explanation of the occurrence in question. Upon the giving of such a notice, the performance of the Party giving notice shall be excused only to the extent and for so long as performance remains impossible. Notwithstanding the foregoing, in the event that a force majeure event declared by a Party persists for more than 180 days, the other Party shall have the right to terminate this Agreement pursuant to Section 7.1 hereof.

 

12.3                         No Assignment. Neither Party may assign this Agreement without the prior written permission of the other Party, which permission shall not be unreasonably withheld or delayed; provided, however, this Agreement may be assigned without such permission to an Affiliate or to a successor to or purchaser of all or substantially all of the business or assets of the assigning Party, or as part of a reorganization, merger, or change of control of the assigning Party.

 

12.4                         Independent Contractors. In entering into and carrying out their respective rights and obligations under this Agreement, the Parties are independent contractors and shall have no power or authority, express or implied, to bind the other Party, act on the other Party’s behalf, or in any way enter into or incur any liability for or on behalf of the other Party, and nothing in this Agreement shall be construed as giving rise to a relation of partnership or agency between the Parties.

 

12.5                         Dispute Resolution. In any disagreement or dispute that may arise between the Parties in relation to, resulting from, or arising out of this Agreement, the Parties shall attempt to settle such disagreement or dispute amicably and expeditiously by good faith negotiation. Any such dispute which cannot be so settled within ninety (90) days after the commencement of negotiations shall be referred to binding arbitration by a single, independent arbitrator who is experienced in dealing with disputes of the sort in question and with business relations of the type under this Agreement, to be appointed by mutual agreement of the Parties. If the Parties are not able to agree upon an arbitrator within thirty (30) days, each Party shall appoint one arbitrator who shall mutually agree upon a third arbitrator to serve as the arbitrator for the dispute. The arbitration will be conducted in the vicinity of the non-triggering Party in accordance with the terms and conditions of this Agreement. The arbitration shall be conducted in accordance with the Commercial Arbitration Rules of the American Arbitration Association. The decision of the arbitrator shall be final and shall be fully and irrevocably accepted by the Parties. Judgment upon the award rendered by the arbitrator may be entered in any court having jurisdiction thereof. The arbitrator is not empowered to award treble, punitive or any other damages

 

8



 

in excess of compensatory damages, and each Party irrevocably waives any claim to recover such damages. The Parties shall use their reasonable efforts to conduct all dispute resolution procedures under this Agreement as expeditiously, efficiently and cost-effectively as possible. Notwithstanding the foregoing, any dispute relating to intellectual property or Confidential Information of either or both Parties shall not be subject to this Section 12.5 dispute resolution provision.

 

12.6                         Governing Law. This Agreement shall be governed by and construed in accordance with the laws of the State of Massachusetts, U.S.A. in respect of all matters, including the execution, interpretation, performance and enforcement of this Agreement.

 

12.7                         Notices. All notices and payments required or permitted by this Agreement shall be in writing and shall be sent by reliable overnight commercial courier (e.g., Federal Express, DHL, Airborne or the like), or hand delivered or mailed by registered or certified mail, postage prepaid and return receipt requested, to the relevant Party at the appropriate address, as noted below, and either Party may, in writing, change the address to which notices may be given.

 

If to Gryphon:

If to PHYLOS:

 

 

Gryphon Therapeutics, Inc.

PHYLOS

Gateway Boulevard

128 Spring Street

South San Francisco, CA 94080-7014

Lexington, MA 02421

Attn: Chief Financial Officer

Attn: CEO

 

12.8                         Entire Agreement; Amendment. This Agreement constitutes the entire agreement between the Parties concerning the subject matter of this Agreement, and any representation, promise or condition not incorporated in this Agreement shall not be binding upon either Party. No amendment, modification or addition to this Agreement shall be binding on the Parties unless made in writing and executed by both Parties.

 

IN WITNESS WHEREOF the Parties, by and through their authorized officers, have executed this Agreement as of the Effective Date.

 

 

GRYPHON THERAPEUTICS, INC.

PHYLOS, INC.

 

 

 

 

By:

/s/ F. Blobel

 

By:

/s/ Gustav A. Christensen

 

 

Friedhelm Blobel, Ph.D.

Name: Gustav A. Christensen

 

 

President and CEO

Title: C.E.O.

 

 

Date:

8/26/03

 

Date:

8/27/03

 

 

Acknowledged and agreed to:

 

 

/s/ B. Seed

 

 

 

Brian Seed

 

 

 

Date:

8/28/03

 

 

 

9


 

Exhibits:

 

A — Cosmix Technology Patents and Patent Applications

 

Matter No. /

 

 

 

Application No. /

 

 

Title

 

Country

 

Patent No.

 

Status

GRFN-055

 

 

 

 

 

 

 

 

AUSTRALIA

 

749249

 

Issued -10/3/2002

GENERATION OF DIVERSITY IN COMBINATORIAL LIBRARIES

 

CANADA

 

2279341

 

Pending

 

CHINA

 

98802184.6

 

Pending

 

 

EPO

 

97101539.1

 

Pending

 

 

EPO

 

968283

 

Issued - 5/2/2003

 

 

EPO

 

02021507.5

 

Pending

 

 

HONG KONG

 

00102476.9

 

Pending

 

 

ISRAEL

 

131075

 

Pending

 

 

JAPAN

 

10.532545

 

Pending

 

 

SINGAPORE

 

9903327-6

 

Issued - 7/19/2002

 

 

UNITED STATES

 

6,310,191

 

Issued -10/30/2001

 

 

UNITED STATES

 

09/912,165

 

Pending

 

 

per

 

PCT/EP98/00533

 

National Stage Filed

 

 

 

 

 

 

 

GRFN-056

 

 

 

 

 

 

 

 

EPO

 

02020639.7

 

Pending

RECOMBINATION PROCESS FOR RECOMBINING FRAGMENTS OF VARIANT POLYNUCLEOTIDES

 

EPO

 

02021514.1

 

Pending

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

GRFN-057

 

 

 

 

 

 

 

 

EPO

 

02016743.3

 

Pending

METHOD FOR GENERATING MOLECULES WITH SPECIFIC PROPERTIES BY RECOMBINATION AND SELECTION

 

EPO

 

02027002.1

 

Pending

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

GRFN-058

 

 

 

 

 

 

 

 

EPO

 

02023588.3

 

Pending

METHOD FOR MODULATING THE SURFACE CHARACTERISTICS OF A DEVICE

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

10



 

B. - Gryphon Patent Rights

 

D-ENZYME COMPOSITIONS AND METHODS OF THEIR USE

 

COUNTRY

 

REFERENCE#

 

TYPE

 

FILED

 

SERIAL#

 

ISSUED

 

PATENT#

 

STATUS

AUSTRALIA

 

008/00AU

 

DCA

 

6/7/1993

 

45996/93

 

10/2/1997

 

678768

 

ISSUED

AUSTRALIA

 

008/01AU

 

DIV

 

6/7/1993

 

37564/97

 

6/29/2000

 

721228

 

ISSUED

CANADA

 

008/00CA

 

DCA

 

6/7/1993

 

2,137,378

 

 

 

 

 

PENDING

EUROPEAN PATENT

 

008/00EP

 

DCA

 

6/7/1993

 

93916447.1

 

4/7/1999

 

0647266

 

ISSUED

EUROPEAN PATENT

 

008/02EP

 

DIV

 

6/7/1993

 

98108855.2

 

 

 

 

 

PENDING

JAPAN

 

008/00J P

 

DCA

 

6/7/1993

 

6-501660

 

 

 

 

 

PENDING

UNITED STATES

 

008/01 US

 

DCA

 

12/2/1994

 

08/343,585

 

4/15/2003

 

6,548,279

 

ISSUED

UNITED STATES

 

008/02US1

 

DIV

 

5/22/1996

 

08/651,144

 

3/21/2000

 

6,040,133

 

ISSUED

UNITED STATES

 

008/03US

 

CON

 

5/22/1996

 

08/651,303

 

6/8/1999

 

5,910.437

 

ISSUED

UNITED STATES

 

008/04US

 

CON

 

8/17/2002

 

10/223,103

 

 

 

 

 

PENDING

UNITED STATES

 

008/05US

 

CON

 

8/27/2002

 

10/229,553

 

 

 

 

 

PENDING

 

11



 

C. — PROfusion Technology Peptide Library Characteristics

 

Peptide Libraries, for the purposes of this agreement, are defined as nucleic acid libraries comprising, on each molecule:

 

· two fixed regions containing all necessary nucleic acid and amino acid encoding regions necessary for the practice of PROfusion (including but not limited to PCR primer-binding regions, a linker binding region, Transcription and Translation initiating regions, nucleic acid sequence tags, 4-8 amino acid peptide purification tags) and, optionally may include fixed amino acids, which may be cysteine, that allow the formation of a disulfide constrained loop containing the variable region, and;

 

· a variable region encoding 5-50 amino acids where at least 90%* of the amino acids encoded at each position are randomly selected from a group of at least 15 amino acids.

 

Specifically excluded from Peptide Libraries are libraries based on a naturally occurring protein or domain(s) of a protein or an de novo engineered protein designed based on the tertiary structure of naturally occurring domains, with the deliberate insertion of amino acid variability in one or more exposed portions of that molecule (Scaffolded Libraries) and libraries derived from cellular mRNA (Proteomic Libraries). Examples of scaffolded proteins already practiced are antibody VH or VL domains, the 10th Type III repeat of Fibronectin (TRINECTINTM binding proteins), Titin and Gurmarin.* Individual clones or pools for affinity maturation are exempted from the “at least 90%” restriction as long as all invariant sequences in the variable region are derived from a pre-existing clone from a peptide library.

 

12



 

Exhibit D

 

Schedule of Exceptions

 

In connection with the execution and delivery by Phylos, Inc. (“Phylos”) of that certain Research and Development Collaboration and License Agreement with Gryphon Therapeutics, Inc. (the “Agreement”), Phylos hereby provides this Schedule of Exceptions on Exhibit D. The disclosure contained herein shall qualify the Re presentations and Warranties made by Phylos in Section 9 of the Agreement.

 

United States Patent 6,361,943, Yanagawa, et al. March 26,2002. No agreement is currently in place between Phylos and Mitsubishi Chemical Corp. Phylos has filed an interference with the US Patent Office.

 

German Patent DE19646372. Pschorr, June 19, 1997. Phylos filed a brief in 5 German courts including Frankfurt and Munich.

 

Kaufman Patent Estate currently held by Advanced Molecular Evolution. Phylos has a license, but it is not transferable and may apply to the Gryphon applications if they were to take a license.

 

AME PATENT RIGHTS

 

Country

 

Application No.

 

Filing Date

 

Patent No.

 

Issue Date

United States

 

 

 

 

 

 

 

 

U.S.

 

08/349,510

 

12/2/94

 

5,723,323

 

3/3/98

U.S.

 

08/464,142

 

6/5/95

 

5,824,514

 

10/20/98

U.S.

 

08/464,327

 

6/5/95

 

5,976,862

 

11/2/99

U.S.

 

08/464,141

 

6/5/95

 

5,817,483

 

10/6/98

U.S.

 

08/468,468

 

6/5/95

 

 

 

 

U.S.

 

08/462,637

 

6/5/95

 

5,763,192

 

6/9/98

U.S.

 

08/468,477

 

6/5/95

 

5,814,476

 

9/29/98

U.S.

 

08/464,569

 

6/5/95

 

 

 

 

Non-U.S.

 

 

 

 

 

 

 

 

Switzerland

 

1379/85

 

3/14/86

 

EP 8603683

 

12/24/87

Switzerland

 

85902946.4

 

6/17/85

 

EP 229,046

 

5/4/94

Germany

 

85902946.4

 

6/17/85

 

DE 3,587,814

 

5/4/94

Germany

 

P 3546806.8

 

6/17/85

 

3,546,806

 

3/28/91

Germany

 

P 3546807.6

 

6/17/85

 

3,546,807

 

3/28/91

Germany

 

P 3590766.5

 

6/17/85

 

3,590,766

 

1/10/91

England

 

8628313.2

 

6/17/85

 

2,183,661

 

6/28/89

Hong Kong

 

9,200,202
UK Pat 2183661

 

6/17/85

 

# 200 of 1992

 

6/28/95

Singapore

 

P 79/92
UK Pat 2183661

 

6/17/85

 

9290079.4

 

6/28/95

EPO

 

93116225.9

 

6/17/85

 

 

 

 

Japan

 

60-502625

 

6/17/85

 

2,584,613

 

Published 2/26/97

Japan

 

7-243853

 

8/3/95

 

 

 

 

EPO

 

85902946.4

 

6/17/85

 

229,046

 

5/04/94

Canada

 

504,653

 

3/20/86

 

1,339,937

 

6/30/98

Canada

 

617,095

 

4/28/98

 

 

 

 

 

13


 

EXHIBIT E - Profusion Technology

 

EXHIBIT E

Phylos, Inc. Patents

 

Country/Type

 

Title

 

Registration/
Application
Number

 

Registration/
Application
Date

 

Status

US Provisional

 

IN VITRO SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

60/035,963

 

1/21/1997

 

 

US Provisional

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

60/064,491

 

11/6/1997

 

 

US

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

09/007,005

 

1/14/1998

 

Issued

PCT

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

US98/00807

 

1/14/1998

 

 

AU

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

62419/98

 

8/4/1999

 

Issued

CA

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

2278786

 

7/21/1999

 

 

CN

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

98803511.1

 

9/21/1999

 

 

EP

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

98904574.5

 

9/21/1999

 

 

HK

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

106756.1

 

9/21/1999

 

 

IL

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

131016

 

7/21/1999

 

 

IN

 

A PROCESS FOR THE MANUFACTURE OF A PROTEIN

 

158/DEL/1998

 

1/20/1998

 

 

JP

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

10-534534

 

7/21/1999

 

 

KR

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

99-7006594

 

7/21/1999

 

 

RU

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

99118585

 

8/20/1998

 

 

TH

 

SELECTIONS OF PROTEINS USING RNA-PROTEINS FUSIONS

 

41800

 

1/15/1998

 

 

TW

 

SELECTIONS OF PROTEINS USING RNA-PROTEINS FUSIONS

 

87100513

 

1/15/1998

 

 

ZA

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

98/0489

 

1/21/1998

 

 

AU

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

97069/01

 

8/4/1999

 

 

US

 

RNA-ANTIBODY FUSIONS AND THEIR SELECTION

 

09/238,710

 

1/28/1999

 

Issued

US

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

09/244,794

 

2/5/1999

 

Issued

 

14



 

US

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

09/244,796

 

2/5/1999

 

Issued

US

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

09/247,190

 

2/9/1999

 

Issued

PCT

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

US00/02589

 

2/1/2000

 

 

AU

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

34793/00

 

2/1/2000

 

 

CA

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

2361725

 

2/1/2000

 

 

EP

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

913326.5

 

2/1/2000

 

 

HK

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

02 103 482.7

 

2/1/2000

 

 

IL

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

247,190

 

2/1/2000

 

 

JP

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

2000-598669

 

2/1/2000

 

 

KR

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

2001-7009987

 

2/1/2000

 

 

NO

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

2001 3842

 

2/1/2000

 

 

NZ

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

513153

 

2/1/2000

 

 

RU

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

2001 124810

 

2/1/2000

 

 

US

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

09/430,049

 

10/29/1999

 

Issued

US

 

SELECTION OF PROTEINS USING RNA-PROTEIN FUSIONS

 

09/876,235

 

6/6/2001

 

 

US Provisional

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

60/090,970

 

6/29/1998

 

 

US

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

09/342.980

 

6/29/1999

 

 

PCT

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

US99/14776

 

6/29/1999

 

 

AU

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

48470/99

 

6/29/1999

 

 

CA

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

2,331,92

 

6/29/1999

 

 

CN

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

99807977.4

 

6/29/1999

 

 

 

15



 

CZ

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

PV200-4564

 

6/29/1999

 

 

EP

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

99,932,082

 

6/29/1999

 

 

HK

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

01107096.7

 

6/29/1999

 

 

IN

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

684

 

6/29/1999

 

 

IL

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

140,100

 

6/29/1999

 

 

JP

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

2000-557385

 

6/29/1999

 

 

KR

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

2000-7014838

 

6/29/1999

 

 

NO

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

20006675

 

6/29/1999

 

 

NZ

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

508287

 

6/29/1999

 

 

RU

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

2001102509

 

6/29/1999

 

 

ZA

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

2000/7261

 

6/29/1999

 

 

US

 

METHODS FOR GENERATING HIGHLY DIVERSE LIBRARIES

 

09/434,834

 

11/5/1999

 

 

US Provisional

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA-PROTEIN FUSION FORMATION

 

60/096,818

 

8/17/1998

 

 

US

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA-PROTEIN FUSION FORMATION

 

09/374,962

 

8/16/1999

 

Issued

PCT

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA-PROTEIN FUSION FORMATION

 

US99/18603

 

8/16/1999

 

 

AU

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA-PROTEIN FUSION FORMATION

 

54883/99

 

8/16/1999

 

 

EP

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA-PROTEIN FUSION FORMATION

 

99941179.6

 

8/16/1999

 

 

JP

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA-PROTEIN FUSION FORMATION

 

2000-565171

 

8/16/1999

 

 

CA

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA PROTEIN FUSION FORNATION

 

2,334,946

 

8/16/1999

 

 

 

16



 

US

 

METHODS FOR PRODUCING NUCLEIC ACIDS LACKING 3’-UNTRANSLATED REGIONS AND OPTIMIZING CELLULAR RNA-PROTEIN FUSION FORMATION

 

09/910,518

 

7/20/2001

 

 

US Provisional

 

IDENTIFICATION OF COMPOUND-PROTEIN INTERACTIONS USING LIBRARIES OF PROTEIN-NUCLEIC ACID FUSION MOLECULES

 

60/096,820

 

8/17/1998

 

 

US

 

IDENTIFICATION OF COMPOUND-PROTEIN INTERACTIONS USING LIBRARIES OF PROTEIN-NUCLEIC ACID FUSION MOLECULES

 

09/374,964

 

8/16/1999

 

 

PCT

 

IDENTIFICATION OF COMPOUND-PROTEIN INTERACTIONS USING LIBRARIES OF PROTEIN-NUCLEIC ACID FUSION MOLECULES

 

US99/18600

 

8/16/1999

 

 

AU

 

IDENTIFICATION OF COMPOUND-PROTEIN INTERACTIONS USING LIBRARIES OF PROTEIN-NUCLEIC ACID FUSION MOLECULES

 

61296/99

 

8/16/1999

 

 

CA

 

IDENTIFICATION OF COMPOUND-PROTEIN INTERACTIONS USING LIBRARIES OF PROTEIN-NUCLEIC ACID FUSION MOLECULES

 

2,337,490

 

8/16/1999

 

 

EP

 

IDENTIFICATION OF COMPOUND-PROTEIN INTERACTIONS USING LIBRARIES OF PROTEIN-NUCLEIC ACID FUSION MOLECULES

 

999480.42.9

 

8/16/1999

 

 

JP

 

IDENTIFICATION OF COMPOUND-PROTEIN INTERACTIONS USING LIBRARIES OF PROTEIN-NUCLEIC ACID FUSION MOLECULES

 

2000-564919

 

8/16/1999

 

 

US Provisional

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

60/110,549

 

12/2/1998

 

 

US

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

09/453,190

 

12/2/1999

 

Issued

PCT

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

US99/28472

 

12/2/1999

 

 

AU

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

23509/00

 

12/2/1999

 

 

CA

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

2350417

 

12/2/1999

 

 

EP

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

99967171.2

 

12/2/1999

 

 

HK

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

02100680.3

 

1/29/2002

 

 

IL

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

143236

 

12/2/1999

 

 

IN

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

 

 

12/2/1999

 

 

 

17



 

JP

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

2000-585,454

 

12/2/1999

 

 

KR

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

2001-7006742

 

12/2/1999

 

 

NO

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

2001-2735

 

12/2/1999

 

 

NZ

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

511699

 

12/2/1999

 

 

US

 

DNA-PROTEIN FUSIONS AND USES THEREOF

 

10/180,819

 

6/26/2002

 

 

US Provisional

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

60/137,032

 

6/1/1999

 

 

US

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

09/585,207

 

6/1/2000

 

 

PCT

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

US00/15077

 

6/1/2000

 

 

AU

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

54555/00

 

6/1/2000

 

 

CA

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

2,373,047

 

6/1/2000

 

 

EP

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

939 474.3

 

6/1/2000

 

 

HK

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

02105898.0

 

6/1/2000

 

 

JP

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

2000-620978

 

6/1/2000

 

 

NO

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

2001 5828

 

6/1/2000

 

 

NZ

 

METHODS OF PRODUCING 5’-NUCLEIC ACID-PROTEIN CONJUGATES

 

514772

 

6/1/2000

 

 

US Provisional

 

C-TERMINAL PROTEIN TAGGING

 

60/143,339

 

7/12/1999

 

 

US

 

C-TERMINAL PROTEIN TAGGING

 

09/614,264

 

7/12/2000

 

 

PCT

 

C-TERMINAL PROTEIN TAGGING

 

US00/40347

 

7/11/2000

 

 

AU

 

C-TERMINAL PROTEIN TAGGING

 

71338/00

 

7/11/2000

 

 

CA

 

C-TERMINAL PROTEIN TAGGING

 

2,372,795

 

7/11/2000

 

 

EP

 

C-TERMINAL PROTEIN TAGGING

 

960 132.S

 

7/11/2000

 

 

HK

 

C-TERMINAL PROTEIN TAGGING

 

02106434.S

 

7/11/2000

 

 

IL

 

C-TERMINAL PROTEIN TAGGING

 

146451

 

7/11/2000

 

 

NZ

 

C-TERMINAL PROTEIN TAGGING

 

515292

 

7/11/2000

 

 

US Provisional

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

60/145,834

 

7/27/1999

 

 

 

18



 

US

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

09/619,103

 

7/19/2000

 

Issued

PCT

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

US00/19653

 

7/19/2000

 

 

AU

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

61112/00

 

7/19/2000

 

 

CA

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

2,377,468

 

7/19/2000

 

 

EP

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

947 524.5

 

7/19/2000

 

 

HK

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

2106728.4

 

7/19/2000

 

 

IL

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

147037

 

7/19/2000

 

 

JP

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

2001-512922

 

7/19/2000

 

 

KR

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

2002-7001058

 

7/19/2000

 

 

NO

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

2002 0348

 

7/19/2000

 

 

NZ

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

516055

 

7/19/2000

 

 

RU

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

2002104938

 

7/19/2000

 

 

US

 

PEPTIDE ACCEPTOR LIGATION METHODS

 

10/208,357

 

7/30/2002

 

 

US Provisional

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

60/151,261

 

8/27/1999

 

 

US

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

09/648,040

 

8/25/2000

 

Issued

PCT

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

US00/23414

 

8/25/2000

 

 

AU

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

69387/00

 

8/25/2000

 

 

CA

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

2382545

 

8/25/2000

 

 

EP

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

00 957 818.8

 

8/25/2000

 

 

JP

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

2001-520897

 

8/25/2000

 

 

US

 

METHODS FOR ENCODING & SORTING IN VITRO TRANSLATED PROTEINS

 

10/217,914

 

8/13/2002

 

 

US

 

COUPLED ISOTHERMAL POLYNUCLEOTIDE AMPLIFICATION AND TRANSLATION SYSTEM

 

07/939,302

 

9/2/1992

 

 

US

 

COUPLED ISOTHERMAL POLYNUCLEOTIDE AMPLIFICATION AND TRANSLATION SYSTEM

 

08/231,587

 

4/20/1994

 

 

AT

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

BE

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

CH

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

DE

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

 

19



 

EP

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

ES

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

FR

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

GB

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

GR

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

IT

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

LU

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

NL

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

SE

 

RAPID MUTATIONAL ANALYSIS METHOD

 

EP0341444

 

4/13/1989

 

Issued

US

 

RAPID MUTATIONAL ANALYSIS METHOD

 

07/842,465

 

2/27/1992

 

Issued

US

 

RAPID MUTATIONAL ANALYSIS METHOD

 

08/320,663

 

10/11/1994

 

Issued

US

 

RAPID MUTATIONAL ANALYSIS METHOD

 

09/400,207

 

9/21/1999

 

 

US

 

SYSTEMIC POLYPEPTIDE EVOLUTION BY REVERSE TRANSCRIPTION

 

07/829,461

 

1/31/1992

 

Issued

US

 

SYSTEMIC POLYPEPTIDE EVOLUTION BY REVERSE TRANSCRIPTION

 

09/197,649

 

11/23/1998

 

Issued

US

 

SYSTEMIC POLYPEPTIDE EVOLUTION BY REVERSE TRANSCRIPTION

 

09/790,399

 

2/22/2001

 

 

US Provisional

 

SCREENING AND AFFINITY BINDING ASSAYS

 

60/275,197

 

3/12/2001

 

 

US Provisional

 

IN VITRO PROTEIN INTERACTION DETECTION SYSTEMS

 

60/300,267

 

6/21/2001

 

 

US

 

IN VITRO PROTEIN INTERACTION DETECTION SYSTEMS

 

10/176,826

 

6/20/2002

 

 

PCT

 

IN VITRO PROTEIN INTERACTION DETECTION SYSTEMS

 

US02/19937

 

6/20/2002

 

 

US Provisional

 

MODULAR ASSEMBLY OF NUCLEIC ACID-PROTEIN FUSION MOLECULES

 

60/309,231

 

7/31/2001

 

 

US

 

MODULAR ASSEMBLY OF NUCLEIC ACID-PROTEIN FUSION MOLECULES

 

10/

 

7/31/2002

 

 

PCT

 

MODULAR ASSEMBLY OF NUCLEIC ACID-PROTEIN FUSION MOLECULES

 

US02/24180

 

7/31/2002

 

 

US Provisional

 

CELLULAR KINASE TARGETS AND INHIBITORS AND METHODS FOR THEIR USE

 

60/337,990

 

11/13/2001

 

 

US

 

CELLULAR KINASE TARGETS AND INHIBITORS AND METHODS FOR THEIR USE

 

10/293,086

 

11/13/2002

 

 

US Provisional

 

SOLID PHASE IMMOBILIZATION OF PROTEINS AND PEPTIDES

 

60/333,470

 

11/27/2001

 

 

US

 

SOLID PHASE IMMOBILIZATION OF PROTEINS AND PEPTIDES

 

10/302,456

 

11/21/2002

 

 

 

20



 

de

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS, PRODUCTION AND UTILIZATION THEREOF

 

199 23 966.5

 

5/25/1999

 

 

PCT

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS, PRODUCTION AND UTILIZATION THEREOF

 

PCT/EP00/04791

 

5/25/2000

 

 

CA

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS. PRODUCTION AND UTILIZATION THEREOF

 

2,374,438

 

5/25/2000

 

 

CN

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS, PRODUCTION AND UTILIZATION THEREOF

 

00809231.1

 

5/25/2000

 

 

CZ

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS, PRODUCTION AND UTILIZATION THEREOF

 

PV2001-4201

 

5/25/2000

 

 

EE

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS, PRODUCTION AND UTILIZATION THEREOF

 

0616/01 PC

 

5/25/2000

 

 

EP

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS, PRODUCTION AND UTILIZATION THEREOF

 

941987

 

5/25/2000

 

 

IL

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS. PRODUCTION AND UTILIZATION THEREOF

 

146371

 

5/25/2000

 

 

JP

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS, PRODUCTION AND UTILIZATION THEREOF

 

2000-620126

 

5/25/2000

 

 

US

 

DETECTION SYSTEM FOR ANALYZING MOLECULAR INTERACTIONS. PRODUCTION AND UTILIZATION THEREOF

 

5/25/2000

 

 

 

 

de

 

TEST SYSTEM FOR DETECTING ANALYTES, A METHOD FOR THE PRODUCTION THEREOF AND ITS USE

 

 

 

 

 

 

PCT

 

TEST SYSTEM FOR DETECTING ANALYTES, A METHOD FOR THE PRODUCTION THEREOF AND ITS USE

 

PCT/EP00/10336

 

10/20/2000

 

 

CA

 

TEST SYSTEM FOR DETECTING ANALYTES, A METHOD FOR THE PRODUCTION THEREOF AND ITS USE

 

2393703

 

10/20/2000

 

 

de

 

BIO-PROBES AND USES THEREOF

 

100 33 194.7

 

6/26/2001

 

 

PCT

 

BIO-PROBES AND USES THEREOF

 

PCT/EP01/07259

 

6/26/2001

 

 

de

 

METHODS FOR IDENTIFYING SPECIFICALLY CLEAVABLE PEPTIDES AND USE OF SUCH PEPTIDE SEQUENCES

 

100 41 238

 

8/22/2000

 

 

PCT

 

METHODS FOR IDENTIFYING SPECIFICALLY CLEAVABLE PEPTIDES AND USE OF SUCH PEPTIDE SEQUENCES

 

PCT/EP01/0910

 

8/7/2001

 

 

de

 

METHOD FOR ISOLATING AND IDENTIFYING EFFECTORS

 

199 59 857

 

 

 

 

 

21



 

PCT

 

METHOD FOR ISOLATING AND IDENTIFYING EFFECTORS

 

PCT/EP01/14337

 

12/6/2001

 

 

de

 

SECRETION SIGNAL PEPTIDES, DNA SEQUENCES THEREOF, EXPRESSION VECTORS PREPARABLE THEREWITH FOR EUKARYOTIC CELLS AND USE THEREOF FOR BIOTECHNOLOGICAL PREPARATION OF PROTEINS

 

100 62 302.6

 

12/14/2000

 

 

de

 

PEPTIDE ACCEPTOR /tRNA-HYBRID MOLECULE AND ITS USE FOR PREPARING CODON-SPECIFICALLY ARRESTED TRANSLATION COMPLEXES

 

101 16 585.4

 

4/3/2001

 

 

PCT

 

PEPTIDE ACCEPTOR /tRNA-HYBRID MOLECULE AND ITS USE FOR PREPARING CODON-SPECIFICALLY ARRESTED TRANSLATION COMPLEXES

 

PCT/EP02/03649

 

4/3/2002

 

 

US Provisional

 

NOVEL METHOD FOR CLONING VARIABLE DOMAIN SEQUENCES OF IMMUNOLOGICAL GENE REPERTOIRE

 

60/290,907

 

5/14/2001

 

 

PCT

 

NOVEL METHOD FOR CLONING VARIABLE DOMAIN SEQUENCES OF IMMUNOLOGICAL GENE REPERTOIRE

 

US/02/15125

 

5/14/2002

 

 

 

22




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Exhibit 23.1

CONSENT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM

        We consent to the use in this Amendment No. 1 to Registration Statement No. 333-213917 on Form S-1 of our report dated August 17, 2016 relating to the consolidated financial statements of Ra Pharmaceuticals, Inc. (which report expresses an unqualified opinion and includes an explanatory paragraph regarding substantial doubt about the Company's ability to continue as a going concern) appearing in the Prospectus, which is part of this Registration Statement. We also consent to the reference to us under the heading "Experts" in such Prospectus.

/s/ Deloitte & Touche LLP

Boston, Massachusetts
October 13, 2016




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